RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8573
(123 letters)
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 58.3 bits (140), Expect = 2e-11
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSS--MNAASLTPWYVHNDTDVRN 65
V+ +C++P R ++L A + +YVFF++++F +A L P D ++
Sbjct: 209 VIYICSSPDAFRNLMLLALNAGL-TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQD 267
Query: 66 ERARKAYTALLTVTARTPNNEAYRNFSSEL 95
AR+A+ A +T + P+N Y F +L
Sbjct: 268 RSARQAFQAAKIITYKEPDNPEYLEFLKQL 297
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 57.4 bits (138), Expect = 5e-11
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
VV++CA+ T+R I+L A M SG+Y FFNIELF+S + + D +
Sbjct: 214 VVIMCASSDTIRSIMLVAHRHGMT-SGDYAFFNIELFNSSSYGDGS----WKRGDKHDFE 268
Query: 68 ARKAYTALLTVTARTPNNEAYRNFSSELLSA 98
A++AY++L TVT + FS E+ S+
Sbjct: 269 AKQAYSSLQTVTLLRTVKPEFEKFSMEVKSS 299
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 34.8 bits (79), Expect = 0.003
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
+++ AN +L A EL M + F ++ +
Sbjct: 194 TIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH----------------LDG 237
Query: 68 ARKAYTALLTVTARTPNNEAYRNFSSEL 95
+ + +L + ++ Y F L
Sbjct: 238 IVEDSSNILGFSMFNTSHPFYPEFVRSL 265
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 34.5 bits (79), Expect = 0.005
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
+++ + ++ A E NM S Y + + + N + +
Sbjct: 209 IILGQFDQNMAAKVFCCAYEENMYGSK-YQWIIPGWYEPSWWEQVHTE--ANSSRCLRKN 265
Query: 68 ARKAYTALLTVTARTPNNEAYRNFSS 93
A + V +++ + S
Sbjct: 266 LLAAMEGYIGVDFEPLSSKQIKTISG 291
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 34.4 bits (78), Expect = 0.005
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
+++L + I A + + G Y + L + + ++ + V +
Sbjct: 197 IILLYCTKEEATYIFEVANSVGLTGYG-YTWIVPSLVAG-DTDTVPSEFPTGLISVSYDE 254
Query: 68 ARKAYTA 74
A
Sbjct: 255 WDYGLPA 261
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 33.6 bits (76), Expect = 0.010
Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 16/95 (16%)
Query: 1 MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHND 60
+ +VV+ + + IL +L G Y + L
Sbjct: 178 LEKKKERLVVVDCESERLNAILGQIVKLEKNGIG-YHYILANLGF--------------- 221
Query: 61 TDVRNERARKAYTALLTVTARTPNNEAYRNFSSEL 95
D+ + +++ + + +
Sbjct: 222 MDIDLNKFKESGANVTGFQLVNYTDTIPARIMQQW 256
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 33.2 bits (75), Expect = 0.015
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 1 MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHND 60
V++L A+ + +A L+M +G YV+ E S +A P +
Sbjct: 211 AKELEARVIILSASEDDATAVYKSAAMLDMTGAG-YVWLVGEREISGSALRYAPDGIIGL 269
Query: 61 TDVRNER 67
+ +
Sbjct: 270 QLINGKN 276
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 30.5 bits (68), Expect = 0.11
Identities = 9/95 (9%), Positives = 21/95 (22%), Gaps = 16/95 (16%)
Query: 1 MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHND 60
+ V+L V +I+ + G Y + D
Sbjct: 175 LELKKERRVILDCERDKVNDIVDQVITIGKHVKG-YHYI-------------IANLGFTD 220
Query: 61 TDVRNERARKAYTALLTVTARTPNNEAYRNFSSEL 95
D+ + + + ++ F
Sbjct: 221 GDL--LKIQFGGANVSGFQIVDYDDSLVSKFIERW 253
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 28.9 bits (64), Expect = 0.38
Identities = 8/90 (8%), Positives = 20/90 (22%), Gaps = 16/90 (17%)
Query: 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVR 64
V+ + + IL A + M+ Y + + + + R
Sbjct: 191 KEFHVIFDCSHEMAAGILKQALAMGMMTEY-YHYI----------FTTLDLFALDVEPYR 239
Query: 65 NERARKAYTALLTVTARTPNNEAYRNFSSE 94
+ N + +
Sbjct: 240 YSGVN-----MTGFRILNTENTQVSSIIEK 264
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 29.0 bits (64), Expect = 0.40
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 16/90 (17%)
Query: 8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
++ + + IL L G Y + L + D+ ER
Sbjct: 188 RYLIDCEVERINTILEQVVILGKHSRG-YHYMLANLGFT---------------DILLER 231
Query: 68 ARKAYTALLTVTARTPNNEAYRNFSSELLS 97
+ N + F +
Sbjct: 232 VMHGGANITGFQIVNNENPMVQQFIQRWVR 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.3
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 63/177 (35%)
Query: 3 NFSVAVVVLCANPQTVREIL----------LAAEELNMIDSGE-----------YVFFNI 41
++ V +L P +R L + A + DS E +FF I
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-I 306
Query: 42 -----ELFSSMNAASLTPWYVHNDTD-----------VRNERARKAYTALLTVTARTPNN 85
E + + SL P + + + + N + + + P
Sbjct: 307 GVRCYEAYPNT---SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 86 E--------AYRNF-------SSELLSAVL------PILDHAKV-ASAKMPLLQNRY 120
+ +N S L+ L LD +++ S + NR+
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting
complex II, trans-membrane helices, rhodopi glucoside;
HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus}
SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Length = 41
Score = 25.4 bits (55), Expect = 1.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 25 AEELN--MIDSGEYVFFNIELFSSMNAASLTPW 55
+EEL+ +ID G VF + L + A S TPW
Sbjct: 8 SEELHKYVID-GTRVFLGLALVAHFLAFSATPW 39
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 26.9 bits (60), Expect = 1.8
Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 6/88 (6%)
Query: 2 FNF---SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVH 58
+ F V V+ V + ++ +
Sbjct: 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEA 199
Query: 59 NDTDVRNERARKAYTALLTVTARTPNNE 86
+++ ++AY +T NNE
Sbjct: 200 FQVELKEITRKEAYLCDVT---YGTNNE 224
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 27.1 bits (59), Expect = 1.9
Identities = 9/93 (9%), Positives = 20/93 (21%), Gaps = 16/93 (17%)
Query: 3 NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTD 62
V+L V +I+ + G Y + L + D
Sbjct: 177 LKKERRVILDCERDKVNDIVDQVITIGKHVKG-YHYIIANLGFT---------------D 220
Query: 63 VRNERARKAYTALLTVTARTPNNEAYRNFSSEL 95
+ + + ++ F
Sbjct: 221 GDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERW 253
>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form,
oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus}
SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A*
1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A*
2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A*
Length = 267
Score = 25.6 bits (55), Expect = 4.9
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 24 AAEELNMIDSGEYVF-FNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTART 82
+ + + + F NIELF + A + + R R A T +A T
Sbjct: 193 PEVKHRVTEEAKTAFLLNIELFEELQALLTEEHKDQSPSQTEFLRQRPASLVQDTTSAET 252
Query: 83 PNNEAYRNFSSE 94
P ++ + SS
Sbjct: 253 PRGKSQISTSSS 264
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 25.8 bits (56), Expect = 5.1
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDV 63
A+ L +P ++E E + DS +Y +++ + P Y+ DV
Sbjct: 99 AIKSLWNDP-GIQECYDRRREYQLSDSTKYYLNDLDRVAD-------PSYLPTQQDV 147
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 25.5 bits (55), Expect = 6.2
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 7 AVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDV 63
L + VR + E +ID +Y I++ + YV +D D+
Sbjct: 149 HAKALWEDE-GVRACYERSNEYQLIDCAQYFLDKIDVIKQDD-------YVPSDQDL 197
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus,
cell MEMB disulfide bond, endocytosis, HOST-virus inter
receptor, secreted, transmembrane; HET: NAG FUC BMA MAN;
2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A*
3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Length = 640
Score = 25.1 bits (54), Expect = 8.6
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 17 TVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKA 71
++ +A + + + E++ + Y++ D V K
Sbjct: 327 SIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFT-----YINLDKAVLGTSNFKV 376
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Length = 483
Score = 24.7 bits (55), Expect = 9.3
Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 13 ANPQTVREILLAAEELN 29
ANPQ V ++L +EL+
Sbjct: 459 ANPQLVNQLLK--QELD 473
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 24.7 bits (55), Expect = 9.6
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 13 ANPQTVREILLAAEELN 29
ANP+ I+ + L
Sbjct: 466 ANPELTNRIIQ--KLLE 480
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 24.9 bits (54), Expect = 9.6
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 13 ANPQTVREILLAAEELNMIDSG 34
A+ + V +I+ +L I G
Sbjct: 614 ADGKLVSQIV--RRKLQEISGG 633
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 24.8 bits (54), Expect = 9.8
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 36 YVFFNIELFSSMNAASLT----PWYVHNDTDVRNERARKAYTALLTVTART 82
V +N + + +L W + D E++ + V A +
Sbjct: 869 IVMYN----PNKTSQTLNLPSGDWTIVGLGDQIGEKSLGHVMGNVQVPAIS 915
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi
protein complex, ligase, protein biosynthesis; HET: ADP;
2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Length = 478
Score = 24.7 bits (55), Expect = 9.8
Identities = 6/17 (35%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 13 ANPQTVREILLAAEELN 29
ANPQ V +++ E +
Sbjct: 462 ANPQVVNKVIR--ELVK 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.130 0.371
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,788,089
Number of extensions: 91492
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 28
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)