RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8573
         (123 letters)



>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple
          bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
          Length = 41

 Score = 27.1 bits (60), Expect = 0.12
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 25 AEELN--MIDSGEYVFFNIELFSSMNAASLTPW 55
          +EEL+  +ID G  VF  + L +   A S TPW
Sbjct: 8  SEELHKYVID-GTRVFLGLALVAHFLAFSATPW 39


>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits
          {Rhodoblastus acidophilus [TaxId: 1074]}
          Length = 40

 Score = 26.7 bits (59), Expect = 0.13
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 25 AEELN--MIDSGEYVFFNIELFSSMNAASLTPW 55
          AEEL+  +ID G  VF  I   +   A +LTPW
Sbjct: 9  AEELHKHVID-GTRVFLVIAAIAHFLAFTLTPW 40


>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 26.8 bits (58), Expect = 0.69
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 1   MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHND 60
                  VVV      TVR +L A   L ++  GE+     + ++  +          N 
Sbjct: 244 ERLPKARVVVCFCEGMTVRGLLSAMRRLGVV--GEFSLIGSDGWADRDEVIEGYEVEANG 301

Query: 61  TDVRNERARKAYTALLTVTARTPNNEAYRNFSSEL 95
                 ++ +  +          +      +  E 
Sbjct: 302 GITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEF 336


>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit
          {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 88

 Score = 24.1 bits (52), Expect = 3.5
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 5/46 (10%)

Query: 57 VHNDTDVRNERARKAYTALLTVTARTPNN-----EAYRNFSSELLS 97
          V    D   +R    Y A      R   +       Y+++  + L 
Sbjct: 1  VKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSYLEKPLG 46


>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 213

 Score = 24.4 bits (53), Expect = 3.6
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 24  AAEELNMIDSGEYVFFNIELFSSMNAASLTPWY 56
            A  L +    + +F NIE F +++AA +  W 
Sbjct: 84  HARRLGIP-KNKLLFANIEDFFAVDAAWIAAWV 115


>d2dcya1 b.29.1.11 (A:1-185) Xylanase II {Bacillus subtilis [TaxId:
           1423]}
          Length = 185

 Score = 23.5 bits (51), Expect = 7.9
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 28  LNMIDSGEYVFFNIELFSSMNAASLTPW 55
           +N+  +  Y     E + S  ++++T W
Sbjct: 158 MNLGSNWAYQVMATEGYQSSGSSNVTVW 185


>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli
           [TaxId: 562]}
          Length = 179

 Score = 23.5 bits (49), Expect = 8.0
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 83  PNNEAYRNFSSELLSAVLPILD 104
           PN +A    +  +   + P+++
Sbjct: 158 PNRDAQPFIADWMAKQLQPLVN 179


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,380
Number of extensions: 16286
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 10
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)