BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8577
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
Length = 435
Score = 98.2 bits (243), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 65/94 (69%)
Query: 9 KVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR 68
++K +A + +NFT + + +F+D ++LY A+ ET+A GG+ +DG IT+RMWNR
Sbjct: 296 QLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNR 355
Query: 69 TYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFR 102
++QG+ G + ID NGDR D+SL DMDP+T FR
Sbjct: 356 SFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFR 389
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 4/93 (4%)
Query: 3 FDFTAVKVKK-VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAI 61
F+ +++VK V K+G N + V+ FV F+DA++LY +AL+E + G S+ DG I
Sbjct: 331 FEKFSMEVKSSVEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKI 387
Query: 62 TRRMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94
++ WNRT++GIAG V IDANGDR D+S++ M
Sbjct: 388 IQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAM 420
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 83.6 bits (205), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 4/93 (4%)
Query: 3 FDFTAVKVKK-VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAI 61
F+ +++VK V K+G N + V+ FV F+DA++LY +AL+E + G S+ DG I
Sbjct: 332 FEKFSMEVKSSVEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKI 388
Query: 62 TRRMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94
++ WNRT++GIAG V IDANGDR D+S++ M
Sbjct: 389 IQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAM 421
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 63/93 (67%), Gaps = 4/93 (4%)
Query: 3 FDFTAVKVKK-VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAI 61
F+ +++VK V K+G N + V+ FV F+DA++LY +AL+E + G S+ DG I
Sbjct: 289 FEKFSMEVKSSVEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKI 345
Query: 62 TRRMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94
++ WNRT++GIAG V IDANGDR D+S++ M
Sbjct: 346 IQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAM 378
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 13 VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNET 48
V K+G F+F S +T + A A +LY I L++T
Sbjct: 113 VMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKT 148
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 13 VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNET 48
V K+G F+F S +T + A A +LY I L++T
Sbjct: 113 VMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKT 148
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 13 VAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNET 48
V K+G F+F S +T + A A +LY I L++T
Sbjct: 111 VMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKT 146
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 7 AVKVKKVAKEGYNFTFGNESVS---TFVTAFYDAVILYSIALNETIAMGGSQSDGSAITR 63
+V+ +VA + F+FG + S F F + Y I+L E A+ G + + +TR
Sbjct: 307 SVQGNRVASSLWTFSFGLGAFSGPRVFDVRFQGERLAYEISLQEAGAVYGGNTPAAMLTR 366
Query: 64 RM 65
M
Sbjct: 367 YM 368
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 LLDMDPDTSEFRRNENEELKSGVRGSIDEDLKGG 124
L+D+ PD EF+ E EE++S VR D GG
Sbjct: 5 LIDLSPDDKEFQSVE-EEMQSTVREHRDGGHAGG 37
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 LLDMDPDTSEFRRNENEELKSGVRGSIDEDLKGG 124
L+D+ PD EF+ E EE++S VR D GG
Sbjct: 33 LIDLSPDDKEFQSVE-EEMQSTVREHRDGGHAGG 65
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 LLDMDPDTSEFRRNENEELKSGVRGSIDEDLKGG 124
L+D+ PD EF+ E EE++S VR D GG
Sbjct: 33 LIDLSPDDKEFQSVE-EEMQSTVREHRDGGHAGG 65
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 41 YSIALNETIAMGGSQSDGSAITRRMWNRTYQGI 73
+SI N + + GSQS GS + + N T + I
Sbjct: 397 FSILFNRVLGVSGSQSRGSTMEEELENITTKHI 429
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83
NE STF YD+V L + A G+++ G + ++G+ G DA+
Sbjct: 276 NEEPSTFAALAYDSVHLVANAAK------GAKNSGEIKDNLAXTKDFEGVTGQTSFDADH 329
Query: 84 DRLADYSLLDMD 95
+ + ++ M+
Sbjct: 330 NTVKTAYMMTMN 341
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 64 RMWNR--TYQGIAGDV-------HIDANGDRLADYSLLDMDPDTSEFRRNENEELKSG 112
++W+R T QG+ V H+D NG+ L Y + P+ + + +N G
Sbjct: 24 KVWDRGFTGQGVVVSVVDTGILDHVDLNGNMLPGYDFISSAPNARDGDQRDNNPADEG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,828,355
Number of Sequences: 62578
Number of extensions: 146718
Number of successful extensions: 384
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 18
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)