Query psy8577
Match_columns 124
No_of_seqs 120 out of 1016
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:22:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06386 PBP1_NPR_C_like Ligand 99.8 1.3E-19 2.7E-24 141.3 13.2 107 2-109 271-378 (387)
2 cd06385 PBP1_NPR_A Ligand-bind 99.8 1.7E-19 3.7E-24 140.8 13.0 111 2-112 282-393 (405)
3 cd06372 PBP1_GC_G_like Ligand- 99.8 2.3E-19 4.9E-24 139.4 12.6 108 3-110 272-386 (391)
4 cd06384 PBP1_NPR_B Ligand-bind 99.8 2.7E-19 5.9E-24 139.6 12.8 111 2-112 283-394 (399)
5 cd06369 PBP1_GC_C_enterotoxin_ 99.8 7.7E-19 1.7E-23 136.0 11.7 91 29-120 285-375 (380)
6 cd06373 PBP1_NPR_like Ligand b 99.7 3.3E-17 7.1E-22 127.5 11.7 110 3-112 281-391 (396)
7 cd06370 PBP1_Speract_GC_like L 99.7 1.6E-17 3.4E-22 130.0 9.6 92 3-94 284-381 (404)
8 cd06352 PBP1_NPR_GC_like Ligan 99.7 4E-16 8.6E-21 120.7 12.9 111 2-112 273-384 (389)
9 cd06362 PBP1_mGluR Ligand bind 99.7 3E-16 6.5E-21 124.1 10.3 86 28-113 352-450 (452)
10 cd06390 PBP1_iGluR_AMPA_GluR1 99.7 7.9E-16 1.7E-20 119.6 12.1 87 25-113 259-363 (364)
11 cd06389 PBP1_iGluR_AMPA_GluR2 99.7 1.3E-15 2.9E-20 118.4 11.9 87 25-113 264-368 (370)
12 cd06388 PBP1_iGluR_AMPA_GluR4 99.7 1.2E-15 2.6E-20 118.8 11.2 87 26-114 266-370 (371)
13 cd06380 PBP1_iGluR_AMPA N-term 99.6 2E-15 4.3E-20 116.9 11.6 108 3-113 250-381 (382)
14 cd06371 PBP1_sensory_GC_DEF_li 99.6 3.3E-15 7.2E-20 116.4 11.8 95 15-112 282-376 (382)
15 cd06387 PBP1_iGluR_AMPA_GluR3 99.6 5E-15 1.1E-19 115.6 11.7 86 26-113 268-371 (372)
16 cd06392 PBP1_iGluR_delta_1 N-t 99.6 2.1E-15 4.5E-20 118.8 9.6 89 26-114 292-399 (400)
17 cd06365 PBP1_Pheromone_recepto 99.6 3.5E-15 7.7E-20 119.2 10.4 93 28-120 357-465 (469)
18 cd06379 PBP1_iGluR_NMDA_NR1 N- 99.6 4.1E-15 8.9E-20 115.2 10.0 80 28-109 270-363 (377)
19 cd06376 PBP1_mGluR_groupIII Li 99.6 5.2E-15 1.1E-19 117.7 10.7 80 30-109 359-452 (463)
20 cd06391 PBP1_iGluR_delta_2 N-t 99.6 9.1E-15 2E-19 115.0 11.6 89 26-114 292-399 (400)
21 cd06374 PBP1_mGluR_groupI Liga 99.6 6.8E-15 1.5E-19 117.4 11.0 87 29-118 370-470 (472)
22 cd06364 PBP1_CaSR Ligand-bindi 99.6 4.5E-14 9.8E-19 114.0 11.4 92 29-120 395-506 (510)
23 cd06393 PBP1_iGluR_Kainate_Glu 99.5 5E-14 1.1E-18 109.6 9.7 86 27-114 286-382 (384)
24 cd06367 PBP1_iGluR_NMDA N-term 99.5 4.5E-14 9.9E-19 108.6 9.2 81 28-109 255-351 (362)
25 cd06363 PBP1_Taste_receptor Li 99.4 2.7E-12 6E-17 100.6 11.2 89 30-119 308-404 (410)
26 cd06375 PBP1_mGluR_groupII Lig 99.4 1.8E-12 4E-17 103.4 10.0 82 28-109 352-454 (458)
27 cd06361 PBP1_GPC6A_like Ligand 99.4 1.1E-11 2.4E-16 97.5 12.1 85 31-115 309-399 (403)
28 PF01094 ANF_receptor: Recepto 99.3 3.9E-11 8.4E-16 90.4 9.0 90 3-94 248-347 (348)
29 KOG1055|consensus 99.2 7.1E-12 1.5E-16 103.8 4.0 104 1-111 316-431 (865)
30 cd06381 PBP1_iGluR_delta_like 99.1 2.3E-10 5E-15 89.1 7.2 67 26-113 291-362 (363)
31 cd06378 PBP1_iGluR_NMDA_NR2 N- 99.1 1E-09 2.2E-14 85.5 9.5 77 29-109 257-350 (362)
32 cd06377 PBP1_iGluR_NMDA_NR3 N- 99.0 1E-09 2.3E-14 86.1 8.2 81 29-110 267-371 (382)
33 cd06366 PBP1_GABAb_receptor Li 99.0 1.8E-09 3.8E-14 82.5 7.4 81 2-114 265-347 (350)
34 cd06342 PBP1_ABC_LIVBP_like Ty 98.9 6.4E-09 1.4E-13 78.5 8.9 78 3-94 256-334 (334)
35 KOG1056|consensus 98.9 8E-09 1.7E-13 87.4 8.7 79 31-109 381-471 (878)
36 cd06382 PBP1_iGluR_Kainate N-t 98.9 3.1E-09 6.7E-14 80.6 4.8 79 3-113 248-326 (327)
37 KOG1054|consensus 98.8 2E-08 4.3E-13 81.9 7.9 87 25-112 294-397 (897)
38 cd06345 PBP1_ABC_ligand_bindin 98.8 1.9E-08 4.1E-13 76.8 7.5 70 4-87 269-338 (344)
39 cd06332 PBP1_aromatic_compound 98.7 9.9E-08 2.1E-12 71.9 9.4 76 4-91 255-330 (333)
40 cd06360 PBP1_alkylbenzenes_lik 98.7 1.1E-07 2.3E-12 71.9 9.3 75 3-89 257-331 (336)
41 cd06338 PBP1_ABC_ligand_bindin 98.7 9.3E-08 2E-12 72.7 8.3 77 3-93 268-344 (345)
42 cd06394 PBP1_iGluR_Kainate_KA1 98.6 1.6E-08 3.5E-13 78.1 2.5 42 72-114 291-332 (333)
43 cd06383 PBP1_iGluR_AMPA_Like N 98.6 2.5E-08 5.5E-13 77.8 3.2 69 27-96 272-360 (368)
44 cd06348 PBP1_ABC_ligand_bindin 98.6 2.5E-07 5.4E-12 70.5 7.8 73 4-86 259-337 (344)
45 cd06359 PBP1_Nba_like Type I p 98.6 4.6E-07 1E-11 68.9 9.3 77 3-91 254-330 (333)
46 cd06355 PBP1_FmdD_like Peripla 98.5 1.5E-06 3.2E-11 66.8 10.2 88 4-104 257-345 (348)
47 PRK15404 leucine ABC transport 98.5 1.2E-06 2.6E-11 68.1 9.0 64 27-95 296-360 (369)
48 cd06347 PBP1_ABC_ligand_bindin 98.4 1.8E-06 4E-11 65.0 8.4 74 3-90 257-331 (334)
49 TIGR03407 urea_ABC_UrtA urea A 98.4 5E-06 1.1E-10 64.2 10.1 88 4-104 258-346 (359)
50 cd06357 PBP1_AmiC Periplasmic 98.3 6.3E-06 1.4E-10 63.7 10.0 92 4-108 258-350 (360)
51 TIGR03669 urea_ABC_arch urea A 98.3 1.2E-05 2.6E-10 62.8 11.5 92 4-108 256-349 (374)
52 cd06368 PBP1_iGluR_non_NMDA_li 98.2 1.5E-06 3.3E-11 65.5 4.9 76 3-113 247-323 (324)
53 cd06331 PBP1_AmiC_like Type I 98.2 5.1E-06 1.1E-10 63.1 7.5 71 4-86 256-326 (333)
54 cd06344 PBP1_ABC_ligand_bindin 98.2 4.5E-06 9.8E-11 63.5 6.4 69 4-86 256-325 (332)
55 COG0683 LivK ABC-type branched 98.2 1.8E-05 3.9E-10 61.5 9.6 80 5-95 272-353 (366)
56 cd06358 PBP1_NHase Type I peri 98.1 2.6E-05 5.7E-10 59.3 9.1 73 4-87 255-327 (333)
57 PF13458 Peripla_BP_6: Peripla 98.1 3E-05 6.6E-10 58.5 8.9 79 4-94 259-338 (343)
58 cd06340 PBP1_ABC_ligand_bindin 98.0 3.5E-05 7.6E-10 59.0 7.7 70 4-87 267-341 (347)
59 cd06337 PBP1_ABC_ligand_bindin 98.0 2.6E-05 5.7E-10 60.1 7.0 76 4-94 277-352 (357)
60 cd06346 PBP1_ABC_ligand_bindin 97.9 2.2E-05 4.8E-10 59.2 5.4 55 4-92 257-311 (312)
61 cd06330 PBP1_Arsenic_SBP_like 97.9 6.7E-05 1.4E-09 57.1 7.6 69 4-82 265-333 (346)
62 cd06349 PBP1_ABC_ligand_bindin 97.8 0.00017 3.7E-09 54.9 9.2 77 4-94 257-335 (340)
63 cd06329 PBP1_SBP_like_3 Peripl 97.8 0.0001 2.2E-09 56.3 7.7 64 4-81 267-330 (342)
64 cd06328 PBP1_SBP_like_2 Peripl 97.8 0.00012 2.7E-09 55.8 7.8 64 4-81 258-321 (333)
65 cd06327 PBP1_SBP_like_1 Peripl 97.8 0.00011 2.5E-09 55.7 7.4 68 4-85 258-327 (334)
66 cd06336 PBP1_ABC_ligand_bindin 97.7 9.8E-05 2.1E-09 56.6 6.6 70 4-87 264-341 (347)
67 TIGR03863 PQQ_ABC_bind ABC tra 97.7 0.00019 4E-09 55.8 8.0 71 4-88 235-309 (347)
68 KOG4440|consensus 97.7 4E-05 8.6E-10 63.4 4.3 79 30-109 283-376 (993)
69 cd06339 PBP1_YraM_LppC_lipopro 97.7 4.9E-05 1.1E-09 58.2 3.9 63 5-86 267-330 (336)
70 cd06356 PBP1_Amide_Urea_BP_lik 97.6 0.00049 1.1E-08 52.5 8.0 67 4-83 256-324 (334)
71 PF13433 Peripla_BP_5: Peripla 97.5 0.0014 3E-08 51.5 10.1 87 5-104 259-346 (363)
72 cd06350 PBP1_GPCR_family_C_lik 97.4 0.00025 5.4E-09 53.9 4.7 35 76-110 304-340 (348)
73 cd06343 PBP1_ABC_ligand_bindin 97.2 0.0035 7.7E-08 48.0 9.0 64 27-94 289-357 (362)
74 cd06351 PBP1_iGluR_N_LIVBP_lik 96.8 0.001 2.3E-08 49.7 2.8 35 74-109 287-322 (328)
75 cd06326 PBP1_STKc_like Type I 96.1 0.016 3.4E-07 43.7 5.7 51 27-81 275-326 (336)
76 KOG1052|consensus 95.7 0.1 2.2E-06 43.7 9.2 84 27-112 97-193 (656)
77 cd06335 PBP1_ABC_ligand_bindin 95.7 0.043 9.4E-07 42.0 6.6 66 3-77 260-328 (347)
78 cd06341 PBP1_ABC_ligand_bindin 95.5 0.029 6.3E-07 42.5 4.8 51 26-80 272-324 (341)
79 KOG1053|consensus 93.8 0.37 7.9E-06 42.2 7.8 79 28-109 293-387 (1258)
80 cd06334 PBP1_ABC_ligand_bindin 91.3 1.1 2.4E-05 34.5 7.1 55 26-80 281-343 (351)
81 PRK02866 cyanate hydratase; Va 69.7 8.9 0.00019 26.5 3.8 63 24-103 81-143 (147)
82 PF02560 Cyanate_lyase: Cyanat 69.0 2.5 5.5E-05 25.7 0.9 48 30-85 11-58 (73)
83 cd06333 PBP1_ABC-type_HAAT_lik 68.4 8 0.00017 28.7 3.7 31 4-42 263-293 (312)
84 cd00559 Cyanase_C Cyanase C-te 68.3 5.5 0.00012 23.9 2.2 20 32-51 9-28 (69)
85 TIGR00673 cynS cyanate hydrata 61.4 14 0.0003 25.7 3.5 64 24-104 84-147 (150)
86 TIGR00002 S16 ribosomal protei 44.6 70 0.0015 19.6 4.4 41 78-118 4-50 (78)
87 PRK14521 rpsP 30S ribosomal pr 36.2 69 0.0015 23.1 3.8 35 77-111 5-44 (186)
88 PF00886 Ribosomal_S16: Riboso 35.1 94 0.002 18.0 4.2 27 86-112 7-37 (62)
89 COG4744 Uncharacterized conser 35.0 70 0.0015 21.2 3.4 27 24-50 18-44 (121)
90 PRK14522 rpsP 30S ribosomal pr 33.1 1E+02 0.0022 20.5 4.0 40 79-118 7-51 (116)
91 COG0228 RpsP Ribosomal protein 32.0 53 0.0012 20.7 2.4 41 78-118 5-52 (87)
92 PF03512 Glyco_hydro_52: Glyco 31.8 2.4E+02 0.0052 23.0 6.6 71 27-108 262-333 (428)
93 PF14097 SpoVAE: Stage V sporu 26.5 80 0.0017 22.5 2.8 29 55-85 37-65 (180)
94 cd06245 M14_CPD_III The third 25.0 1E+02 0.0022 24.4 3.5 36 57-94 274-309 (363)
95 PF04348 LppC: LppC putative l 24.3 76 0.0017 26.4 2.8 19 66-84 505-523 (536)
96 PRK14520 rpsP 30S ribosomal pr 24.3 1.5E+02 0.0032 20.8 3.8 35 77-111 5-44 (155)
97 PRK00040 rpsP 30S ribosomal pr 22.7 1.6E+02 0.0036 17.8 3.4 32 79-110 6-42 (75)
98 cd07353 harmonin_N N-terminal 22.6 1.6E+02 0.0035 17.8 3.2 32 4-46 6-37 (79)
99 PRK14525 rpsP 30S ribosomal pr 20.5 2.3E+02 0.0051 17.8 4.3 34 77-110 5-43 (88)
100 PRK14523 rpsP 30S ribosomal pr 20.3 2.2E+02 0.0048 19.5 3.9 33 78-110 5-42 (137)
101 cd03864 M14_CPN Peptidase M14 20.3 1.3E+02 0.0027 24.2 3.2 36 57-94 303-338 (392)
No 1
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=99.83 E-value=1.3e-19 Score=141.28 Aligned_cols=107 Identities=40% Similarity=0.685 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 2 RFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 2 ~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
+|.+|.+++++...++++|. ++..++.|++++|||||++|+||++++..+..+.+|..|.++|++++|+|+||.+.||+
T Consensus 271 ~~~~f~~~~~~~~~~~~~~~-~~~~~~~~aa~~yDav~l~A~Al~~~~~~g~~~~~g~~l~~~l~~~~f~G~tG~v~~d~ 349 (387)
T cd06386 271 EFEKFSMEVKSSVEKAGDLN-DCDYVNMFVEGFHDAILLYALALHEVLKNGYSKKDGTKITQRMWNRTFEGIAGQVSIDA 349 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCc-ccccchHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhCCceeeccccEEECC
Confidence 36789999976666555674 34567899999999999999999999887766799999999999999999999999999
Q ss_pred CCCcccCEEEEEe-cCCCCceEEEEEEeC
Q psy8577 82 NGDRLADYSLLDM-DPDTSEFRRNENEEL 109 (124)
Q Consensus 82 ~Gdr~~~y~i~~~-~~~~~~~~~vg~~~~ 109 (124)
+|+|.++|.|+.+ +..++.|++||.|..
T Consensus 350 ~g~r~~~~~v~~~~~~~~~~~~~~~~~~~ 378 (387)
T cd06386 350 NGDRYGDFSVIAMTDVEAGTYEVVGNYFG 378 (387)
T ss_pred CCCccccEEEEEccCCCCccEEEEeEEcc
Confidence 9999999999999 556789999999965
No 2
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=99.82 E-value=1.7e-19 Score=140.77 Aligned_cols=111 Identities=41% Similarity=0.685 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 2 RFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 2 ~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
++.+|.+++++...+||+|..+...++.+++++|||||++|.||+++++.+..+.+|..|.++|++++|+|+||+|.||+
T Consensus 282 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~l~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~G~tG~v~fd~ 361 (405)
T cd06385 282 EYKEFLSDLKTDAKEMFNFTVEDSLMNIIAGGFYDGVMLYAHALNETMAKGGTRPPGTAITQRMWNRTFYGVTGFVKIDD 361 (405)
T ss_pred hHHHHHHHHHHHhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhCceEeeceeEEEEcC
Confidence 46789999977667789887654457889999999999999999999876655679999999999999999999999999
Q ss_pred CCCcccCEEEEEe-cCCCCceEEEEEEeCCCC
Q psy8577 82 NGDRLADYSLLDM-DPDTSEFRRNENEELKSG 112 (124)
Q Consensus 82 ~Gdr~~~y~i~~~-~~~~~~~~~vg~~~~~~g 112 (124)
+|+|.++|.++.+ ..+++++++|++|+..++
T Consensus 362 ~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~~~ 393 (405)
T cd06385 362 NGDRETDFALWDMTDTESGDFQVVSVYNGTQK 393 (405)
T ss_pred CCCEeceeEEEEccCCCCCcEEEEEEEcccCc
Confidence 9999899999987 336789999999997554
No 3
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=99.82 E-value=2.3e-19 Score=139.37 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHh-cCCCCcccCC-CchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhh---cCeeeeccceE
Q psy8577 3 FDFTAVKVKKVA-KEGYNFTFGN-ESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMW---NRTYQGIAGDV 77 (124)
Q Consensus 3 ~~~f~~~v~~~~-~~~~~~~~~~-~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~---~~~f~G~tG~v 77 (124)
+.+|.+++++.. .+||+|.... ..++.|++++|||||++|+||++++..+..+.+|..|+++|+ +++|+|+||+|
T Consensus 272 ~~~f~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~yDav~~~A~Al~~~~~~g~~~~~g~~l~~~l~~~~~~~f~G~tG~v 351 (391)
T cd06372 272 GYEFRKQVYQKLKRPPFQSSLSSEEQVSPYSAYLHDAVLLYALAVKEMLKAGKDFRNGRQLVSTLRGANQVELQGITGLV 351 (391)
T ss_pred hhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhccCceEeccceeE
Confidence 456888885544 5889887432 356789999999999999999999877666789999999999 68999999999
Q ss_pred EecCCCCcccCEEEEEecCCC--CceEEEEEEeCC
Q psy8577 78 HIDANGDRLADYSLLDMDPDT--SEFRRNENEELK 110 (124)
Q Consensus 78 ~fd~~Gdr~~~y~i~~~~~~~--~~~~~vg~~~~~ 110 (124)
.||++|+|.+.|.|++++..+ ..+++||+|+..
T Consensus 352 ~fd~~G~r~~~y~i~~~~~~~~~~~~~~vg~~~~~ 386 (391)
T cd06372 352 LLDEQGKRQMDYSVYALQKSGNSSLFLPFLHYDSH 386 (391)
T ss_pred EECCCCCcceeEEEEeccccCCccceeeEEEecch
Confidence 999999999999999995422 469999999874
No 4
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=99.82 E-value=2.7e-19 Score=139.61 Aligned_cols=111 Identities=35% Similarity=0.545 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 2 RFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 2 ~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
++.+|.+++++...++|+|...|..++.+++++|||||++|.||++++..+..|.+|..|.++|++++|+|+||.+.||+
T Consensus 283 ~~~~F~~~~~~~~~~~~~~~~~p~~~~~~aa~~YDav~l~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~GvtG~v~fd~ 362 (399)
T cd06384 283 EYKEFQRELHARAKEDFGVELEPSLMNFIAGCFYDGVMLYAMALNETLAEGGSQKDGLNITRKMQDRRFWGVTGLVSIDK 362 (399)
T ss_pred hHHHHHHHHHHHHhhhcCCCcCcchHhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcHhHHHHHhCceeecceeEEEECC
Confidence 46789999976655668886666667889999999999999999999876666679999999999999999999999999
Q ss_pred CCCcccCEEEEEe-cCCCCceEEEEEEeCCCC
Q psy8577 82 NGDRLADYSLLDM-DPDTSEFRRNENEELKSG 112 (124)
Q Consensus 82 ~Gdr~~~y~i~~~-~~~~~~~~~vg~~~~~~g 112 (124)
+|+|.+.|.++.+ +.+++++++|++|+..++
T Consensus 363 ~G~r~~~~~~~~~~~~~~g~~~~v~~~~~~~~ 394 (399)
T cd06384 363 NNDRDIDFDLWAMTDHETGKYEVVAHYNGITK 394 (399)
T ss_pred CCCcccceEEEEeecCCCCeEEEEEEEcCCCc
Confidence 9999889999766 557889999999987543
No 5
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=99.80 E-value=7.7e-19 Score=136.02 Aligned_cols=91 Identities=21% Similarity=0.363 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCCceEEEEEEe
Q psy8577 29 TFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNENEE 108 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~vg~~~ 108 (124)
.|++.+||||.|||+||++++..|.+. ++..|.+.|+|++|+|++|.|++|+||||..+|+|+.+++.+++|.+|++|+
T Consensus 285 ~~aa~fyDaVLLYa~AL~EtL~~G~~~-~~~~I~~~m~NrTF~GitG~V~IDeNGDRd~dfsLl~ms~~tg~y~vV~~y~ 363 (380)
T cd06369 285 DYVAAYHDGVLLFGHVLKKFLESQEGV-QTFSFINEFRNISFEGAGGPYTLDEYGDRDVNFTLLYTSTDTSKYKVLFEFD 363 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHhCcceecCCCceEeCCCCCccCceEEEEeeCCCCCeEEEEEEE
Confidence 899999999999999999999987764 4489999999999999999999999999999999999988889999999999
Q ss_pred CCCCceeccCCc
Q psy8577 109 LKSGVRGSIDED 120 (124)
Q Consensus 109 ~~~g~~~~~~~~ 120 (124)
...+.+..+|.+
T Consensus 364 t~~n~t~~~~~~ 375 (380)
T cd06369 364 TSTNKTYVVDTS 375 (380)
T ss_pred CCCCeeeeccCC
Confidence 988888877764
No 6
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=99.73 E-value=3.3e-17 Score=127.48 Aligned_cols=110 Identities=48% Similarity=0.771 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
+.+|.+++++...++|+|..++..++.+++.+|||||++++||++++.++..+.+|..|.++|++++|+|++|+++||++
T Consensus 281 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~~~~~~~~~~i~~~l~~~~f~G~tG~v~fd~~ 360 (396)
T cd06373 281 YKEFSLEVKERAKKKFNTTSDDSLVNFFAGAFYDAVLLYALALNETLAEGGDPRDGTNITRRMWNRTFEGITGNVSIDEN 360 (396)
T ss_pred HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHhcCCceecccCceEeecC
Confidence 56788888776666777655555678899999999999999999987655445789999999999999999999999999
Q ss_pred CCcccCEEEEEec-CCCCceEEEEEEeCCCC
Q psy8577 83 GDRLADYSLLDMD-PDTSEFRRNENEELKSG 112 (124)
Q Consensus 83 Gdr~~~y~i~~~~-~~~~~~~~vg~~~~~~g 112 (124)
|+|.+.|.|+.+. ..++++++|+.|+..++
T Consensus 361 G~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 391 (396)
T cd06373 361 GDRESDFSLWDMTDTETGTFEVVANYNGSNK 391 (396)
T ss_pred CcccceeeeeeccCCCCceEEEEeecccccc
Confidence 9998899998763 35689999999988543
No 7
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=99.73 E-value=1.6e-17 Score=129.98 Aligned_cols=92 Identities=37% Similarity=0.583 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHh-cCCCCccc----CCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccc-e
Q psy8577 3 FDFTAVKVKKVA-KEGYNFTF----GNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAG-D 76 (124)
Q Consensus 3 ~~~f~~~v~~~~-~~~~~~~~----~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG-~ 76 (124)
+.+|.+++++.. .+|++|+. ....++.|++++|||||++|+||+++++++....+|..|.++|++++|+|+|| +
T Consensus 284 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~yDAv~~~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~GvtG~~ 363 (404)
T cd06370 284 YDSFSIFVRKYNLEPPFNGDLGESELVLEIDIEAAYLYDAVMLYAKALDETLLEGGDIYNGTAIVSHILNRTYRSITGFD 363 (404)
T ss_pred HHHHHHHHHHhccCCCCcccccccccccccceeeehhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcccccccCce
Confidence 467888886655 57787754 23457789999999999999999999876544578999999999999999999 9
Q ss_pred EEecCCCCcccCEEEEEe
Q psy8577 77 VHIDANGDRLADYSLLDM 94 (124)
Q Consensus 77 v~fd~~Gdr~~~y~i~~~ 94 (124)
|.||++|+|.+.|.++.+
T Consensus 364 v~fd~~G~~~~~y~v~~~ 381 (404)
T cd06370 364 MYIDENGDAEGNYSVLAL 381 (404)
T ss_pred EEEcCCCCcccceEEEEe
Confidence 999999999889999999
No 8
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=99.70 E-value=4e-16 Score=120.69 Aligned_cols=111 Identities=45% Similarity=0.694 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHh-cCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEec
Q psy8577 2 RFDFTAVKVKKVA-KEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHID 80 (124)
Q Consensus 2 ~~~~f~~~v~~~~-~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd 80 (124)
.+..|.+++++.. .+|++|......++.+++.+|||||++++|++++...+..+.++..+.+.|++++|.|++|.+.||
T Consensus 273 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~~~~~~~~~~v~~~l~~~~f~g~~G~v~fd 352 (389)
T cd06352 273 EYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLYDAVLLYAHALNETLAEGGDYNGGLIITRRMWNRTFSGITGPVTID 352 (389)
T ss_pred hHHHHHHHHHHHHhcccCccCCCccccchhhhhHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHhcCcEEEeeeeeEEEc
Confidence 3567999996666 588999855556788999999999999999999977655557888999999999999999999999
Q ss_pred CCCCcccCEEEEEecCCCCceEEEEEEeCCCC
Q psy8577 81 ANGDRLADYSLLDMDPDTSEFRRNENEELKSG 112 (124)
Q Consensus 81 ~~Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g 112 (124)
++|+|.+.|.|++++...+.+.+++.++..++
T Consensus 353 ~~G~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 384 (389)
T cd06352 353 ENGDREGDYSLLDLDSTGGQLEVVYLYDTSSG 384 (389)
T ss_pred CCCCeeeeEEEEEecCCCceEEEEEeccccce
Confidence 99999999999999777789999999987655
No 9
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.68 E-value=3e-16 Score=124.06 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC----------CCCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEecC
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMG----------GSQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDMDP 96 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~----------~~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~~~ 96 (124)
+.+++++|||||++|+||++++.++ ..+.+|..|.++|++++|.|++| .|.||++|+|.+.|+|+++..
T Consensus 352 ~~~~~~vyDAV~a~A~AL~~~l~~~~~~~~~~c~~~~~~~~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~~~~y~I~~~~~ 431 (452)
T cd06362 352 ESKVQFVIDAVYAMAHALHNMHRDLCPGTTGLCDAMKPIDGRKLLFYLRNVSFSGLAGGPVRFDANGDGPGRYDIFNYQR 431 (452)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCccCCCHHHHHHHHHhCCcCCCCCceEEECCCCCCCCceEEEEEEE
Confidence 4588999999999999999998532 14578999999999999999998 899999999989999999953
Q ss_pred C--CCceEEEEEEeCCCCc
Q psy8577 97 D--TSEFRRNENEELKSGV 113 (124)
Q Consensus 97 ~--~~~~~~vg~~~~~~g~ 113 (124)
. ...+++||.|+...|+
T Consensus 432 ~~~~~~~~~VG~w~~~~~~ 450 (452)
T cd06362 432 TNGKYDYVKVGSWKGELSL 450 (452)
T ss_pred cCCceEEEEEEEEeccccc
Confidence 2 3478999999876554
No 10
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.67 E-value=7.9e-16 Score=119.64 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=72.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChhHHHHHhhcCeeeeccceEEecCCCCcc-
Q psy8577 25 ESVSTFVTAFYDAVILYSIALNETIAMG-----------------GSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL- 86 (124)
Q Consensus 25 ~~~~~~~~~~yDAV~l~a~Al~~~~~~~-----------------~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~- 86 (124)
..+..+++++|||||++|.|++++...+ ..|..|..|+++|++++|.|+||+|+||++|+|.
T Consensus 259 ~~~~~~~~l~yDaV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~i~F~~~G~r~~ 338 (364)
T cd06390 259 KRPKYTSALTYDGVRVMAEAFQNLRKQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTN 338 (364)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCCCCccHHHHHHHHHhhcccccccceeeCCCCCccc
Confidence 3578899999999999999999875411 1367899999999999999999999999999984
Q ss_pred cCEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 87 ADYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 87 ~~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
..|.|+++ ...+++.||.|++..|+
T Consensus 339 ~~~~I~~~--~~~g~~~vG~W~~~~g~ 363 (364)
T cd06390 339 YTLHVIEM--KHDGIRKIGYWNEDEKL 363 (364)
T ss_pred ceEEEEEe--cCCcceEEEEECCCCCc
Confidence 45666666 56679999999987664
No 11
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.66 E-value=1.3e-15 Score=118.38 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=73.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHc-----------------CCCCCChhHHHHHhhcCeeeeccceEEecCCCCccc
Q psy8577 25 ESVSTFVTAFYDAVILYSIALNETIAM-----------------GGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLA 87 (124)
Q Consensus 25 ~~~~~~~~~~yDAV~l~a~Al~~~~~~-----------------~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~ 87 (124)
..+..+++++||||+++|.|++++... ...|.+|..|.++|++++|+|+||+++||++|+|..
T Consensus 264 ~~~~~~aAl~yDAV~v~a~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~ 343 (370)
T cd06389 264 KTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGNIKFDQNGKRIN 343 (370)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccceEeCCCCcccc
Confidence 357789999999999999999987532 113678999999999999999999999999999964
Q ss_pred -CEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 88 -DYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 88 -~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
.+.|+++ +.++++.||.|++..|+
T Consensus 344 ~~~~ii~l--~~~g~~kvG~W~~~~~~ 368 (370)
T cd06389 344 YTINVMEL--KSNGPRKIGYWSEVDKM 368 (370)
T ss_pred ceEEEEEe--cCCcceEEEEEcCCCCc
Confidence 5677766 66789999999987775
No 12
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.65 E-value=1.2e-15 Score=118.84 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=71.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-------------c----CCCCCChhHHHHHhhcCeeeeccceEEecCCCCccc-
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIA-------------M----GGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLA- 87 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~-------------~----~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~- 87 (124)
.+..+++++|||||++|.|++++.. + ...|..|..|.++|++++|+|+||+++||++|+|..
T Consensus 266 ~~~~~aAl~YDaV~l~a~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~i~Fd~~G~r~~~ 345 (371)
T cd06388 266 PPKYTSALTYDGVLVMAEAFRNLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNIQFDHYGRRVNY 345 (371)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccceeECCCCCcccc
Confidence 4677899999999999999998741 1 113677899999999999999999999999999953
Q ss_pred CEEEEEecCCCCceEEEEEEeCCCCce
Q psy8577 88 DYSLLDMDPDTSEFRRNENEELKSGVR 114 (124)
Q Consensus 88 ~y~i~~~~~~~~~~~~vg~~~~~~g~~ 114 (124)
.+.|+++ ....++.||.|++..|+.
T Consensus 346 ~l~Ii~l--~~~g~~kvG~W~~~~g~~ 370 (371)
T cd06388 346 TMDVFEL--KSNGPRKIGYWNDMDKLV 370 (371)
T ss_pred eEEEEEc--cCCCceEEEEEcCCCCcc
Confidence 4555555 666799999999887764
No 13
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=99.65 E-value=2e-15 Score=116.90 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCC-----------------------CCCChh
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGG-----------------------SQSDGS 59 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~-----------------------~~~~g~ 59 (124)
+.+|.+++++....++.- .....+..+++++|||||++|.|++++...+. .|.+|.
T Consensus 250 ~~~f~~~~~~~~~~~~~~-~~~~~~~~~aa~aYDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~g~ 328 (382)
T cd06380 250 VQKFLQRWKKLDPREWPG-AGTSPIKYTAALAHDAVLVMAEAFRSLRRQRGSGRHRIDISRRGNGGDCLANPAVPWEHGI 328 (382)
T ss_pred HHHHHHHHHhcCccccCc-CCcCCcchHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCcCCCCCCCCccchH
Confidence 445666665543221110 01224667999999999999999999864220 256899
Q ss_pred HHHHHhhcCeeeeccceEEecCCCCcc-cCEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 60 AITRRMWNRTYQGIAGDVHIDANGDRL-ADYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 60 ~l~~~~~~~~f~G~tG~v~fd~~Gdr~-~~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
.|.++|++++|.|+||.|+||++|+|. ..+.|+++ .++.+++||.|++..|+
T Consensus 329 ~i~~~l~~~~~~G~tG~i~Fd~~G~~~~~~~~i~~~--~~~~~~~vg~w~~~~g~ 381 (382)
T cd06380 329 DIERALKKVQFEGLTGNVQFDEFGQRTNYTLDVVEL--KTRGLRKVGYWNEDDGL 381 (382)
T ss_pred HHHHHHHhcccCCcccceEECCCCCcccccEEEEEe--cCCCceEEEEECCCcCc
Confidence 999999999999999999999999985 45777777 56679999999987764
No 14
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=99.64 E-value=3.3e-15 Score=116.37 Aligned_cols=95 Identities=22% Similarity=0.386 Sum_probs=79.3
Q ss_pred cCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEe
Q psy8577 15 KEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94 (124)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~ 94 (124)
..||+ .++..++.|++.+|||||++|+||+++++.+.. .+|..++++|++++|+|++|+|+||++|++.+.|.|+++
T Consensus 282 ~~~~~--~~~~~~~~~~~~~YDav~~~a~Al~~a~~~g~~-~d~~~l~~~l~~~~f~GvtG~v~fd~~g~~~~~~~v~~~ 358 (382)
T cd06371 282 EIPSD--LEPEQVSPLFGTIYNSIYLLAHAVENARAAGGG-VSGANLAQHTRNLEFQGFNQRLRTDSGGGGQAPYVVLDT 358 (382)
T ss_pred CCCCC--CCccccchhHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHhCccccccceEEEecCCCCcccceEEEec
Confidence 35665 345567778889999999999999999765443 789999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEEeCCCC
Q psy8577 95 DPDTSEFRRNENEELKSG 112 (124)
Q Consensus 95 ~~~~~~~~~vg~~~~~~g 112 (124)
+..+.++.+.-.+++++|
T Consensus 359 ~~~~~~~~~~~~~~~~~~ 376 (382)
T cd06371 359 DGKGDQLYPTYTLDPSTG 376 (382)
T ss_pred CCCCCeeeeeEEeccccC
Confidence 666667888777777554
No 15
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.62 E-value=5e-15 Score=115.64 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=71.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc-----------------CCCCCChhHHHHHhhcCeeeeccceEEecCCCCcc-c
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIAM-----------------GGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL-A 87 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~~-----------------~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~-~ 87 (124)
.+..+++++|||||++|.|++++... ...|..|..|+++|++++|+|+||+++||++|+|. .
T Consensus 268 ~l~~~~al~yDaV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~i~F~~~G~R~~~ 347 (372)
T cd06387 268 PLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNY 347 (372)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCCCCCCccchHHHHHHHHhcccCCCccceeeCCCCCcccc
Confidence 46789999999999999999987431 11367899999999999999999999999999983 4
Q ss_pred CEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 88 DYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 88 ~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
.|.|+++ ....++.||.|++..|+
T Consensus 348 ~ldIinl--~~~g~~kIG~W~~~~g~ 371 (372)
T cd06387 348 TIDVYEM--KPSGSRKAGYWNEYERF 371 (372)
T ss_pred eEEEEEe--cCCCceeEEEECCCCCc
Confidence 6666666 56679999999987764
No 16
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=99.62 E-value=2.1e-15 Score=118.79 Aligned_cols=89 Identities=13% Similarity=0.286 Sum_probs=72.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-----------c----CCCCCChhHHHHHhhcCeeeeccceEEecCCCCc-ccCE
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIA-----------M----GGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDR-LADY 89 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~-----------~----~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr-~~~y 89 (124)
.++.+++++|||||++|.|+++.+. + ...|..|..|+++|+.+.|.|+||+|+||++|+| ...|
T Consensus 292 ~l~~~aalayDaV~~~A~Al~~ll~~~~~~~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~I~F~~~G~r~~~~l 371 (400)
T cd06392 292 MLQVSNLYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGVMEFKEDGANPHVQF 371 (400)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCCCCCChHHHHHHHHhCCCccCccceeECCCCCCcCCce
Confidence 4788999999999999999998642 1 1136789999999999999999999999999988 3567
Q ss_pred EEEEecCC---CCceEEEEEEeCCCCce
Q psy8577 90 SLLDMDPD---TSEFRRNENEELKSGVR 114 (124)
Q Consensus 90 ~i~~~~~~---~~~~~~vg~~~~~~g~~ 114 (124)
.|++++.. +.+++.||+|++.+|+.
T Consensus 372 dIi~l~~~~~~g~g~~~iG~W~~~~gl~ 399 (400)
T cd06392 372 EILGTSYSETFGKDVRRLATWDSEKGLN 399 (400)
T ss_pred EEEeccccccCCCCceEeEEecCCCCCC
Confidence 77776432 34699999999888753
No 17
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.62 E-value=3.5e-15 Score=119.19 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCC----------CCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEecC
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMGG----------SQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDMDP 96 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~~----------~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~~~ 96 (124)
+.++.++|||||++|+||++++.++. ...++.+|+++|++++|.|.+| .|.||++||+.+.|+|++++.
T Consensus 357 ~~~~~~v~dAVya~AhALh~~l~c~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~q~ 436 (469)
T cd06365 357 SEESYNVYNAVYAVAHALHEMLLQQVETQSENNGKRLIFLPWQLHSFLKNIQFKNPAGDEVNLNQKRKLDTEYDILNYWN 436 (469)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCccHHHHHHHHHhccccCCCCCEEEecCCCCcCceeeEEEEEE
Confidence 44678899999999999999987421 1257889999999999999999 799999999988999999953
Q ss_pred C---CCceEEEEEEeCC--CCceeccCCc
Q psy8577 97 D---TSEFRRNENEELK--SGVRGSIDED 120 (124)
Q Consensus 97 ~---~~~~~~vg~~~~~--~g~~~~~~~~ 120 (124)
. ...+++||.|+.. .+..++|+++
T Consensus 437 ~~~~~~~~~~VG~~~~~~~~~~~l~i~~~ 465 (469)
T cd06365 437 FPQGLGLKVKVGEFSPQAPSGQQLSISEE 465 (469)
T ss_pred CCCCCEEEEEEEEEeCCCCCCcEEEEehh
Confidence 2 2368999999852 3446777754
No 18
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=99.61 E-value=4.1e-15 Score=115.15 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCChhHHHHHhhcCeeeeccceEEecCCCCcc-cCEEEEE
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMGG-------------SQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL-ADYSLLD 93 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~~-------------~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~-~~y~i~~ 93 (124)
..+++++|||||++|+||++++.... .|.+|..|+++|++++|.|+||+|.||++|||. ..|+|++
T Consensus 270 ~~~~~~~yDAV~~~A~Al~~~~~~~~~~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~i~Fd~~Gd~~~~~~~I~~ 349 (377)
T cd06379 270 KNESSHIRDAVAVLASAIQELFEKENITEPPRECVGNTVIWETGPLFKRALMSSKYPGETGRVEFNDDGDRKFANYDIMN 349 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCcchHHHHHHHHhCCcCCccCceEECCCCCccCccEEEEE
Confidence 45789999999999999999864211 356889999999999999999999999999995 6899999
Q ss_pred ecCCCCceEEEEEEeC
Q psy8577 94 MDPDTSEFRRNENEEL 109 (124)
Q Consensus 94 ~~~~~~~~~~vg~~~~ 109 (124)
+ ....+++||.|+.
T Consensus 350 ~--~~~~~~~VG~w~~ 363 (377)
T cd06379 350 I--QNRKLVQVGLYNG 363 (377)
T ss_pred e--cCCCceEeeEEcC
Confidence 9 5568999999976
No 19
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.61 E-value=5.2e-15 Score=117.73 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC---------C-CCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEecCC-
Q psy8577 30 FVTAFYDAVILYSIALNETIAMG---------G-SQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDMDPD- 97 (124)
Q Consensus 30 ~~~~~yDAV~l~a~Al~~~~~~~---------~-~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~~~~- 97 (124)
+++++|||||++|+||++++.++ . .+.+|.+|.++|++++|+|.+| +|.||++|++.+.|+|.+++..
T Consensus 359 ~~~~v~dAVyaiA~ALh~l~~~~c~~~~~~C~~~~~~~~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~~~~Ydi~n~q~~~ 438 (463)
T cd06376 359 KVQFVIDAVYAMAHALHSMHKDLCPGYTGVCPEMEPADGKKLLKYIRAVNFNGSAGTPVMFNENGDAPGRYDIFQYQITN 438 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCccCCCCCHHHHHHHHHhCCccCCCCCeEEeCCCCCCCCceEEEEEEecC
Confidence 68899999999999999998421 1 3578999999999999999999 8999999999888999999642
Q ss_pred --CCceEEEEEEeC
Q psy8577 98 --TSEFRRNENEEL 109 (124)
Q Consensus 98 --~~~~~~vg~~~~ 109 (124)
...++.||.|+.
T Consensus 439 ~~~~~~~~VG~w~~ 452 (463)
T cd06376 439 TSSPGYRLIGQWTD 452 (463)
T ss_pred CCceeEEEEEEECC
Confidence 237899999964
No 20
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=99.61 E-value=9.1e-15 Score=115.03 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-----------cCC----CCCChhHHHHHhhcCeeeeccceEEecCCCCc-ccCE
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIA-----------MGG----SQSDGSAITRRMWNRTYQGIAGDVHIDANGDR-LADY 89 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~-----------~~~----~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr-~~~y 89 (124)
.++.+++++|||||++|.|++++.. +.. .|..|..|+++|+.+.|+|+||+++||++|+| ...|
T Consensus 292 ~~~~~~alayDaV~~~A~A~~~l~~~~~~~~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~i~f~~~g~r~~~~~ 371 (400)
T cd06391 292 MMEISNLYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFNENGGNPNVHF 371 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhccccCCCCcccccCCCCCCCChHHHHHHHHhcCcccceeceEECCCCCccCCce
Confidence 4568999999999999999998742 111 46789999999999999999999999999988 4577
Q ss_pred EEEEecC---CCCceEEEEEEeCCCCce
Q psy8577 90 SLLDMDP---DTSEFRRNENEELKSGVR 114 (124)
Q Consensus 90 ~i~~~~~---~~~~~~~vg~~~~~~g~~ 114 (124)
.|+++.. .+.+++.||+|++.+|+.
T Consensus 372 dIin~~~~~~~~~g~rkiG~Ws~~~gl~ 399 (400)
T cd06391 372 EILGTNYGEDLGRGVRKLGCWNPITGLN 399 (400)
T ss_pred EEEEeeccccCCCcceEEEEEcCCcCCC
Confidence 8877731 145799999999877753
No 21
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.61 E-value=6.8e-15 Score=117.40 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcC---C-------CCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEecCC
Q psy8577 29 TFVTAFYDAVILYSIALNETIAMG---G-------SQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDMDPD 97 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~~~~---~-------~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~~~~ 97 (124)
.+++++|||||++|+||++++.++ . .+.+|.+|+++|++++|.|++| +|.||++|++.+.|+|+++...
T Consensus 370 ~~~~~vyDAVyaiA~ALh~~~~~~~~~~~~~c~~~~~~~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~~~ydI~n~~~~ 449 (472)
T cd06374 370 SKMGFVINAIYAMAHGLHNMHQDLCPGHVGLCDAMKPIDGRKLLEYLLKTSFSGVSGEEVYFDENGDSPGRYDIMNLQYT 449 (472)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCCCHHHHHHHHHhCcccCCCCCeEEEcCCCCCCCceEEEEEEEC
Confidence 466799999999999999997421 0 2367899999999999999999 8999999999889999999532
Q ss_pred -C--CceEEEEEEeCCCCceeccC
Q psy8577 98 -T--SEFRRNENEELKSGVRGSID 118 (124)
Q Consensus 98 -~--~~~~~vg~~~~~~g~~~~~~ 118 (124)
+ ..++.||.|+. . .+.||
T Consensus 450 ~~~~~~~~~VG~w~~-~--~l~~~ 470 (472)
T cd06374 450 EDLRFDYINVGSWHE-G--DLGID 470 (472)
T ss_pred CCCCEEEEEEEEEeC-C--ccccc
Confidence 2 36899999963 3 35554
No 22
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.55 E-value=4.5e-14 Score=114.05 Aligned_cols=92 Identities=18% Similarity=0.282 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEe
Q psy8577 29 TFVTAFYDAVILYSIALNETIAMGG-------------SQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDM 94 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~~~~~-------------~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~ 94 (124)
.++.++|||||++|+||++++.+.. ...++++|+++|++++|.|.+| .|.||++||..+.|+|++|
T Consensus 395 ~~~~~v~~AVyAvAhaLh~~~~c~~~~~~~~~~~c~~~~~~~~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~ 474 (510)
T cd06364 395 RISYNVYLAVYSIAHALQDIYTCTPGKGLFTNGSCADIKKVEAWQVLKHLRHLNFTDNMGEQVRFDEGGDLVGNYSIINW 474 (510)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCHHHHHHHHHhcEEecCCCCEEEEecCCCCccceeEEEe
Confidence 4578899999999999999986421 1256889999999999999998 8999999999889999999
Q ss_pred cCC--CC--ceEEEEEEeCC--CCceeccCCc
Q psy8577 95 DPD--TS--EFRRNENEELK--SGVRGSIDED 120 (124)
Q Consensus 95 ~~~--~~--~~~~vg~~~~~--~g~~~~~~~~ 120 (124)
+.. ++ .++.||.|+.. .+..++|+++
T Consensus 475 q~~~~~~~~~~v~VG~~~~~~~~~~~l~i~~~ 506 (510)
T cd06364 475 HLSPEDGSVVFKEVGYYNVYAKKGERLFINES 506 (510)
T ss_pred eecCCCCcEEEEEEEEEcCCCCCCceEEeccc
Confidence 642 33 57999999852 4556777764
No 23
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=99.53 E-value=5e-14 Score=109.60 Aligned_cols=86 Identities=16% Similarity=0.278 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC---------CCCCChhHHHHHhhcCeeeeccceEEecC-CCCcc-cCEEEEEec
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAMG---------GSQSDGSAITRRMWNRTYQGIAGDVHIDA-NGDRL-ADYSLLDMD 95 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~~---------~~~~~g~~l~~~~~~~~f~G~tG~v~fd~-~Gdr~-~~y~i~~~~ 95 (124)
+..+++++|||||++|.|++++...+ ..|..|..|.++|++++|+|+||.++||+ +|.|. ..+.|+++
T Consensus 286 ~~~~aal~yDav~~~a~A~~~~~~~~~~~~~c~~~~~w~~G~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~- 364 (384)
T cd06393 286 MMTDAALLYDAVHMVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISL- 364 (384)
T ss_pred ccchhHHhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCcccHHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEe-
Confidence 46789999999999999999763311 12678899999999999999999999996 57773 35555555
Q ss_pred CCCCceEEEEEEeCCCCce
Q psy8577 96 PDTSEFRRNENEELKSGVR 114 (124)
Q Consensus 96 ~~~~~~~~vg~~~~~~g~~ 114 (124)
....++.||.|++..|+.
T Consensus 365 -~~~g~~~vg~W~~~~g~~ 382 (384)
T cd06393 365 -KEDGLEKVGVWNPNTGLN 382 (384)
T ss_pred -cCCcceeeEEEcCCCCcC
Confidence 667899999999888864
No 24
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=99.53 E-value=4.5e-14 Score=108.60 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC---------------CCCCChhHHHHHhhcCeeeeccceEEecCCCCcc-cCEEE
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMG---------------GSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL-ADYSL 91 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~---------------~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~-~~y~i 91 (124)
..+++++||||+++|+|+++++.++ ..|.+|..|.++|++++|.|+||+|.||++|+|. +.|+|
T Consensus 255 ~~~~~~~~Dav~~~a~Al~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg~v~F~~~G~~~~~~~~I 334 (362)
T cd06367 255 YSLEARVRDAVAIVARAAESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGETGDVSFNEDGYLSNPKLVI 334 (362)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCCCCCCCCchHHHHHHHhcccccCCCCceeECCCcccccceEEE
Confidence 4678999999999999999987531 1157899999999999999999999999999985 68999
Q ss_pred EEecCCCCceEEEEEEeC
Q psy8577 92 LDMDPDTSEFRRNENEEL 109 (124)
Q Consensus 92 ~~~~~~~~~~~~vg~~~~ 109 (124)
++++. ...|++||.|+.
T Consensus 335 ~~l~~-~~~~~~VG~W~~ 351 (362)
T cd06367 335 INLRR-NRKWERVGSWEN 351 (362)
T ss_pred EEecC-CCcceEEEEEcC
Confidence 99943 568999999964
No 25
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=99.41 E-value=2.7e-12 Score=100.62 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC------CCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEec--CCCCce
Q psy8577 30 FVTAFYDAVILYSIALNETIAMGG------SQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMD--PDTSEF 101 (124)
Q Consensus 30 ~~~~~yDAV~l~a~Al~~~~~~~~------~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~--~~~~~~ 101 (124)
+++..|||||++|+||++++..+. ...++..|.++|++++|+|++|++.||++|++...+.|.++. +...++
T Consensus 308 ~~~~~YDaV~~~a~Al~~a~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~g~i~fd~~G~~~~~~~i~~~~~~~~~~~~ 387 (410)
T cd06363 308 FAFSVYAAVYAVAHALHNVLQCGSGGCPKRVPVYPWQLLEELKKVNFTLLGQTVRFDENGDPNFGYDIVVWWWDNSSGTF 387 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHhccEEecCCcEEEeCCCCCCccceEEEEEEEcCCceeE
Confidence 457799999999999999976432 135688899999999999999999999999986678888883 333479
Q ss_pred EEEEEEeCCCCceeccCC
Q psy8577 102 RRNENEELKSGVRGSIDE 119 (124)
Q Consensus 102 ~~vg~~~~~~g~~~~~~~ 119 (124)
++||.|++. +..+++++
T Consensus 388 ~~vG~~~~~-~~~l~~~~ 404 (410)
T cd06363 388 EEVGSYSFY-PIRLTINR 404 (410)
T ss_pred EEEEEEECC-CCEEEEeh
Confidence 999999874 33566654
No 26
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.40 E-value=1.8e-12 Score=103.39 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--cCC--------CCCChhHHH-HHhhcCeee-----eccc-eEEecCCCCcccCEE
Q psy8577 28 STFVTAFYDAVILYSIALNETIA--MGG--------SQSDGSAIT-RRMWNRTYQ-----GIAG-DVHIDANGDRLADYS 90 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~--~~~--------~~~~g~~l~-~~~~~~~f~-----G~tG-~v~fd~~Gdr~~~y~ 90 (124)
..++.++|||||++|+||++++. ++. ...++++++ .+|++++|. |.+| .|.||++||..+.|+
T Consensus 352 ~~~~~~v~~AVyA~AhaLh~~l~~~c~~~~~~c~~~~~~~~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~~~~Yd 431 (458)
T cd06375 352 ESKIMFVVNAVYAMAHALHNMQRDLCPNTTKLCDAMKPLDGKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDGLGRYN 431 (458)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHhccccccccCCCCCCeeEECCCCCCCcceE
Confidence 45788999999999999999984 211 236788999 599999999 9998 899999999888999
Q ss_pred EEEecCCC----CceEEEEEEeC
Q psy8577 91 LLDMDPDT----SEFRRNENEEL 109 (124)
Q Consensus 91 i~~~~~~~----~~~~~vg~~~~ 109 (124)
|.+++... ..++.||.|+.
T Consensus 432 I~n~q~~~~~~~~~~~~VG~w~~ 454 (458)
T cd06375 432 IFNYQRTGNSYGYRYVGVGAWAN 454 (458)
T ss_pred EEEEEEcCCCCcEEEEEEEEEec
Confidence 99996322 25889999953
No 27
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.37 E-value=1.1e-11 Score=97.50 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC----CCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCC--ceEEE
Q psy8577 31 VTAFYDAVILYSIALNETIAMGG----SQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTS--EFRRN 104 (124)
Q Consensus 31 ~~~~yDAV~l~a~Al~~~~~~~~----~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~--~~~~v 104 (124)
...+|||||++|+||++++.++. ...++++|+++|++++|.|.+|.+.||++||..+.|+|.+++..++ .|+.|
T Consensus 309 ~~~v~~AVyaiA~Al~~~~~~~~c~~~~~~~~~~l~~~L~~~~f~g~~~~v~Fd~~gd~~~~y~I~~~~~~~~~~~~~~v 388 (403)
T cd06361 309 IHSIQLAVFALAHAIRDLCQERQCQNPNAFQPWELLGQLKNVTFEDGGNMYHFDANGDLNLGYDVVLWKEDNGHMTVTIM 388 (403)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCcCHHHHHHHHheeEEecCCceEEECCCCCCCcceEEEEeEecCCcEEEEEE
Confidence 45789999999999999854211 2368999999999999999988999999999878999999954333 58999
Q ss_pred EEEeCCCCcee
Q psy8577 105 ENEELKSGVRG 115 (124)
Q Consensus 105 g~~~~~~g~~~ 115 (124)
|.|++.+...+
T Consensus 389 g~~~~~~~~~~ 399 (403)
T cd06361 389 AEYDPQNDVFI 399 (403)
T ss_pred EEEeCCCCEEe
Confidence 99998766443
No 28
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=99.25 E-value=3.9e-11 Score=90.44 Aligned_cols=90 Identities=32% Similarity=0.532 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhcCCCCccc-CCCchhhHHHHHHHHHHHHHHHHHHHHHcCC-------CCCChhHHHHHhhcCeeeecc
Q psy8577 3 FDFTAVKVKKVAKEGYNFTF-GNESVSTFVTAFYDAVILYSIALNETIAMGG-------SQSDGSAITRRMWNRTYQGIA 74 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~-~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~-------~~~~g~~l~~~~~~~~f~G~t 74 (124)
|.+|.+++++...+ .+.. ....+..+++++||||+++|+|+++++..+. .|.+|..|.++|++++|.|++
T Consensus 248 ~~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~yDAv~~~a~al~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~t 325 (348)
T PF01094_consen 248 FEDFMKKWKESNNQ--SSTSGSDQEPSPYAAYAYDAVYLLAHALNRALQDGGPVTNGRNPWQNGSQLLKYLRNVSFEGLT 325 (348)
T ss_dssp HHHHHHHHHTTTHT--TTTTTTTSSGCHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSSGTSTTHHHHHHHHHTEEEEETT
T ss_pred hhhhhcccChhhcc--CcccccccccceeeeeehhhhHHHHHHHHHHHHhccCCCCCccccccHHHHHHHHhheeeeCCC
Confidence 56677777654322 2222 2346788999999999999999999986421 255788999999999999999
Q ss_pred ceEEecC-CCCc-ccCEEEEEe
Q psy8577 75 GDVHIDA-NGDR-LADYSLLDM 94 (124)
Q Consensus 75 G~v~fd~-~Gdr-~~~y~i~~~ 94 (124)
|++.||+ +|+| ...|.++++
T Consensus 326 G~v~f~~~~G~~~~~~~~i~~~ 347 (348)
T PF01094_consen 326 GRVSFDSNDGDRTNYDYDILNM 347 (348)
T ss_dssp EEEEEETTTSBEESEEEEEEEE
T ss_pred CCEEEeCCCCCcCCCEEEEEEC
Confidence 9999999 8888 334444443
No 29
>KOG1055|consensus
Probab=99.23 E-value=7.1e-12 Score=103.79 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=80.3
Q ss_pred CchHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCC---------C---CChhHHHHHhhcC
Q psy8577 1 MRFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGS---------Q---SDGSAITRRMWNR 68 (124)
Q Consensus 1 ~~~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~---------~---~~g~~l~~~~~~~ 68 (124)
|+-.+|.+++.+.++.- | +......+++++|||||++|+|+++++..... . .-...|.++|.++
T Consensus 316 ~T~~~~l~~~~~~r~~~--~--~~~~~~~~~~~ayd~Iwa~ala~n~t~e~l~~~~~~l~~f~y~~k~i~d~i~eamn~t 391 (865)
T KOG1055|consen 316 MTAQEFLEELTKYRKRH--P--EETGGFQEAPLAYDAIWALALALNKTMEGLGRSHVRLEDFNYNNKTIADQIYEAMNST 391 (865)
T ss_pred chhHHHHHHHHhhhccc--c--ccccCcccCchHHHHHHHHHHHHHHHHhcCCccceeccccchhhhHHHHHHHHHhhcc
Confidence 45567788885555421 1 22345678899999999999999999764210 0 2245688999999
Q ss_pred eeeeccceEEecCCCCcccCEEEEEecCCCCceEEEEEEeCCC
Q psy8577 69 TYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNENEELKS 111 (124)
Q Consensus 69 ~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~ 111 (124)
+|.|++|.|.|.. |+|.+...|.++ ++|+++++|+||...
T Consensus 392 sF~GvsG~V~F~~-geR~a~t~ieQ~--qdg~y~k~g~Yds~~ 431 (865)
T KOG1055|consen 392 SFEGVSGHVVFSN-GERMALTLIEQF--QDGKYKKIGYYDSTK 431 (865)
T ss_pred cccccccceEecc-hhhHHHHHHHHH--hCCceEeeccccccc
Confidence 9999999999987 999888888888 899999999999743
No 30
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=99.11 E-value=2.3e-10 Score=89.09 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=53.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCC-----c
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTS-----E 100 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~-----~ 100 (124)
.+...++++|||||++ +++|+.+.|+|+||+|.||++|.|. +|++-.++..-. .
T Consensus 291 ~~~~~~al~yDaV~~~--------------------~~~~~~~~~~GLTG~i~F~~~g~r~-~~~l~i~~~~~~~~~~~~ 349 (363)
T cd06381 291 MLEISNLYIYDSVLLL--------------------LETIKKGPITGLTGKLEFNEGGDNS-NVQFEILGTGYSETLGKD 349 (363)
T ss_pred ChhHHHHHHHHHHHHH--------------------HHHHHhcCccCcceeEEeCCCCCcc-ccEEEEEEeccCCccccc
Confidence 4677899999999998 6678888999999999999999983 666555543322 3
Q ss_pred eEEEEEEeCCCCc
Q psy8577 101 FRRNENEELKSGV 113 (124)
Q Consensus 101 ~~~vg~~~~~~g~ 113 (124)
.+.+|+|++..|+
T Consensus 350 ~~~~~~w~~~~~~ 362 (363)
T cd06381 350 GRWLATWNPSKGL 362 (363)
T ss_pred eEEeeeccCCCCC
Confidence 6779999987764
No 31
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.07 E-value=1e-09 Score=85.53 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHc-----------C---C-CCCChhHHHHHhhcCeeeeccceEEecCCCCc-ccCEEEE
Q psy8577 29 TFVTAFYDAVILYSIALNETIAM-----------G---G-SQSDGSAITRRMWNRTYQGIAGDVHIDANGDR-LADYSLL 92 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~~~-----------~---~-~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr-~~~y~i~ 92 (124)
.+.+.+||||+++|.|++.+++. . . .|..|..|.++|++++|+|. +|+||++|+| .+.|+|+
T Consensus 257 ~~~a~~~DaV~vva~Al~~l~~~~~~~~~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G~--~i~F~~~G~r~~~~ldIi 334 (362)
T cd06378 257 SLRARVRDGVAIIATGASAMLRQHGFIPEAKGSCYGQAEKRDLPPNTLHRYMMNVTWEGR--DLSFTEDGYLVNPKLVVI 334 (362)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCchHHHHHHhhcceECCC--ceeECCCCeEccceEEEE
Confidence 35788999999999999987641 0 1 15679999999999999996 9999999987 4567777
Q ss_pred EecCCC-CceEEEEEEeC
Q psy8577 93 DMDPDT-SEFRRNENEEL 109 (124)
Q Consensus 93 ~~~~~~-~~~~~vg~~~~ 109 (124)
++ .. ..|+.||.|+.
T Consensus 335 nl--~~~~g~~kVG~W~~ 350 (362)
T cd06378 335 SL--NKERVWEEVGKWEN 350 (362)
T ss_pred Ee--cCCCCceEEEEEcC
Confidence 77 54 47999999973
No 32
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.04 E-value=1e-09 Score=86.12 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----H---------c--C--C-CCCChhHHHHHhhcCeeeeccceEEecCCCCcc-cCE
Q psy8577 29 TFVTAFYDAVILYSIALNETI----A---------M--G--G-SQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL-ADY 89 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~----~---------~--~--~-~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~-~~y 89 (124)
..++++||||+++|.|++.+. . + . . .|.+|..|.++|++++|+|.||+|.|+ .|.|. .+|
T Consensus 267 ~l~ali~DAV~lvA~a~~~l~~~~~~~~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~I~F~-~g~R~~~~~ 345 (382)
T cd06377 267 PLEAYVQDALELVARAVGSATLVQPELALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGPVWVT-GSSQVHSSR 345 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCcccCCCCCCCCchHHHHHHHHhCcccccceeEEEc-cCeeecccc
Confidence 348999999999999999752 1 1 1 2 577999999999999999999999995 56673 355
Q ss_pred EEEEecCC--C-C--ceEEEEEEeCC
Q psy8577 90 SLLDMDPD--T-S--EFRRNENEELK 110 (124)
Q Consensus 90 ~i~~~~~~--~-~--~~~~vg~~~~~ 110 (124)
.+..++.+ . | .|++||.|+..
T Consensus 346 ~l~I~~L~~~~~G~~~W~kVG~W~~~ 371 (382)
T cd06377 346 HFKVWSLRRDPVGQPTWTTVGSWQGG 371 (382)
T ss_pred eEEEEEeccccCCCccceEEEEecCC
Confidence 55444333 2 2 56999999874
No 33
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=98.98 E-value=1.8e-09 Score=82.52 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHhcCC-CCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEec
Q psy8577 2 RFDFTAVKVKKVAKEG-YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHID 80 (124)
Q Consensus 2 ~~~~f~~~v~~~~~~~-~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd 80 (124)
.+.+|.+++++..+.+ ++ ...+..+++++|||+|+ +++|.|++|+|+||
T Consensus 265 ~~~~f~~~~~~~~~~~~~~----~~~p~~~a~~~YDav~~--------------------------~~~~~G~~G~v~fd 314 (350)
T cd06366 265 TLQEFTSRWRKRFGNENPE----LTEPSIYALYAYDAVWA--------------------------STNFNGLSGPVQFD 314 (350)
T ss_pred cHHHHHHHHHHHhcccCcC----cCCCCcccchhhhheee--------------------------eceEEeeeeeEEEc
Confidence 3677888887766532 22 22467789999999998 55899999999999
Q ss_pred CCCCc-ccCEEEEEecCCCCceEEEEEEeCCCCce
Q psy8577 81 ANGDR-LADYSLLDMDPDTSEFRRNENEELKSGVR 114 (124)
Q Consensus 81 ~~Gdr-~~~y~i~~~~~~~~~~~~vg~~~~~~g~~ 114 (124)
++|++ ...|.++++ .++++++||.|++..|+.
T Consensus 315 ~~~~~~~~~~~~~~~--~~~~~~~vg~~~~~~~~~ 347 (350)
T cd06366 315 GGRRLASPAFEIINI--IGKGYRKIGFWSSESGLS 347 (350)
T ss_pred CCCccCCcceEEEEe--cCCceEEEEEEeCCCCcc
Confidence 99987 568888888 677999999999877654
No 34
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=98.93 E-value=6.4e-09 Score=78.47 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
+.+|.+++.+..+. .++.++...||+++++++|++++ + ..++..+.++|++.+|.|++|+++||++
T Consensus 256 ~~~f~~~~~~~~~~---------~~~~~~~~~yda~~~~~~al~~~---~--~~~~~~v~~~l~~~~~~g~~g~i~f~~~ 321 (334)
T cd06342 256 GKAFVARYKAKFGD---------PPGAYAPYAYDAANVLAEAIKKA---G--STDPAKVADALRKVDFDGVTGKISFDAK 321 (334)
T ss_pred HHHHHHHHHHHhCC---------CCchhHHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHHhCCCCCcceeeEECCC
Confidence 45677777665543 24678899999999999999987 3 3678899999999999999999999999
Q ss_pred CCc-ccCEEEEEe
Q psy8577 83 GDR-LADYSLLDM 94 (124)
Q Consensus 83 Gdr-~~~y~i~~~ 94 (124)
|++ ...|.|++|
T Consensus 322 g~~~~~~~~~~~~ 334 (334)
T cd06342 322 GDLKGAAVTVYQV 334 (334)
T ss_pred CCcccCcEEEEeC
Confidence 997 568888764
No 35
>KOG1056|consensus
Probab=98.89 E-value=8e-09 Score=87.41 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--C--------CCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCC-
Q psy8577 31 VTAFYDAVILYSIALNETIAM--G--------GSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTS- 99 (124)
Q Consensus 31 ~~~~yDAV~l~a~Al~~~~~~--~--------~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~- 99 (124)
..+++||||++|+||+.+++. + ....+|++|.+++++++|.+..|.+.||++||..+.|+|.++...++
T Consensus 381 ~~~Vi~aVya~A~aLh~m~~~lc~~~~~~C~~m~~~dg~~L~~~l~~vnF~~~~~~v~Fd~~gD~~~~y~I~~~~~~~~~ 460 (878)
T KOG1056|consen 381 VQFVIDAVYAMAHALHNMHQDLCPGTSGLCSAMKAIDGSLLLKYLLNVNFTGPAGSVRFDENGDGPGRYDILNYQLTNGS 460 (878)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcCCccccCcCccccCHHHHHhhhheeEEecCCCceeecCCCCCccceeEEEeeccCCC
Confidence 467999999999999999763 1 12469999999999999999999999999999999999999965443
Q ss_pred -ceEEEEEEeC
Q psy8577 100 -EFRRNENEEL 109 (124)
Q Consensus 100 -~~~~vg~~~~ 109 (124)
.+..||+|+.
T Consensus 461 ~~y~~vg~w~~ 471 (878)
T KOG1056|consen 461 YTYKEVGYWSE 471 (878)
T ss_pred ccceeeeeecc
Confidence 7899999976
No 36
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=98.86 E-value=3.1e-09 Score=80.57 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
+.+|.+++++..+.. +....+..++.+++..||||+++ |+||.|+||++
T Consensus 248 ~~~f~~~~~~~~~~~-~~~~~~~~p~~~~a~~yDav~~~------------------------------g~tG~v~f~~~ 296 (327)
T cd06382 248 VKEVIRSLELSWDEG-CRILPSTGVTTESALMYDAVYLF------------------------------GLTGRIEFDSS 296 (327)
T ss_pred HHHHHHHHHhhcccc-cccCCCCCcchhhhhhhceEEEe------------------------------ecccceeeCCC
Confidence 566777776665421 01223445778899999999987 99999999999
Q ss_pred CCcccCEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 83 GDRLADYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
|+| .+|++..++..++.+++||.|+...|+
T Consensus 297 g~r-~~~~~~~~~~~~~~~~~vg~w~~~~~~ 326 (327)
T cd06382 297 GQR-SNFTLDVIELTESGLRKVGTWNSSEGL 326 (327)
T ss_pred CCE-eeeEEEEEeccccCceEEEEECCCCCc
Confidence 999 477777776677889999999876553
No 37
>KOG1054|consensus
Probab=98.80 E-value=2e-08 Score=81.89 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=73.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHc-------C----------CCCCChhHHHHHhhcCeeeeccceEEecCCCCccc
Q psy8577 25 ESVSTFVTAFYDAVILYSIALNETIAM-------G----------GSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLA 87 (124)
Q Consensus 25 ~~~~~~~~~~yDAV~l~a~Al~~~~~~-------~----------~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~ 87 (124)
+++..-+++.||||..+++|++.++.+ | ..|.+|..|-.+++++.++|+||+|+||..|.| .
T Consensus 294 ~~~k~tsAlthDailV~~eaf~~~~~q~~~~~rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R-~ 372 (897)
T KOG1054|consen 294 DPIKYTSALTHDAILVMAEAFRSLRRQRIDISRRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRR-T 372 (897)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHhhhchhccCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCcc-c
Confidence 456667899999999999999998753 1 136789999999999999999999999999988 5
Q ss_pred CEEEEEecCCCCceEEEEEEeCCCC
Q psy8577 88 DYSLLDMDPDTSEFRRNENEELKSG 112 (124)
Q Consensus 88 ~y~i~~~~~~~~~~~~vg~~~~~~g 112 (124)
+|++..++...+..+.+|+|+...+
T Consensus 373 Nyt~~i~elk~~~~rk~~~W~e~~~ 397 (897)
T KOG1054|consen 373 NYTIDIVELKSNGSRKVGYWNEGEG 397 (897)
T ss_pred cceEEEEEeccCCcceeeeecccCc
Confidence 8988888777777889999985444
No 38
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=98.80 E-value=1.9e-08 Score=76.77 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++.++.+. .++.++...||+++++++|++++ +. .++..|.++|++++|.|++|+|+||++|
T Consensus 269 ~~f~~~y~~~~g~---------~p~~~~~~~yda~~~l~~A~~~a---g~--~~~~~i~~al~~~~~~g~~G~i~f~~~g 334 (344)
T cd06345 269 VPFTEAYEAKFGG---------PPNYMGASTYDSIYILAEAIERA---GS--TDGDALVEALEKTDFVGTAGRIQFYGDD 334 (344)
T ss_pred HHHHHHHHHHhCC---------CCcccchHHHHHHHHHHHHHHHh---cC--CCHHHHHHHHHhCCCcCCceeEEECCCC
Confidence 4677777666654 25778899999999999999987 43 5788999999999999999999999999
Q ss_pred Cccc
Q psy8577 84 DRLA 87 (124)
Q Consensus 84 dr~~ 87 (124)
|+.+
T Consensus 335 ~~~~ 338 (344)
T cd06345 335 SAFA 338 (344)
T ss_pred CcCc
Confidence 9854
No 39
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=98.73 E-value=9.9e-08 Score=71.88 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++.+..+. .++.++...||++++++.|++++ +....++..+.++|++++|+|++|.+.||++|
T Consensus 255 ~~f~~~~~~~~~~---------~~~~~~~~~yda~~~~~~a~~~a---g~~~~~~~~v~~al~~~~~~~~~g~i~f~~~~ 322 (333)
T cd06332 255 KRFVAAYKAAYGR---------VPSVYAAQGYDAAQLLDAALRAV---GGDLSDKDALRAALRAADFDSPRGPFKFNPNH 322 (333)
T ss_pred HHHHHHHHHHhCC---------CCcHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhcCceecCccceeECCCC
Confidence 4577777665543 25778999999999999999987 54445677899999999999999999999999
Q ss_pred CcccCEEE
Q psy8577 84 DRLADYSL 91 (124)
Q Consensus 84 dr~~~y~i 91 (124)
+...++.+
T Consensus 323 ~~~~~~~~ 330 (333)
T cd06332 323 NPIQDFYL 330 (333)
T ss_pred CcccceeE
Confidence 86544443
No 40
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=98.72 E-value=1.1e-07 Score=71.93 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
..+|.+++++..+. .++.++...||++++++.|++++ ++...++..+.++|++.+|.|..|+++||++
T Consensus 257 ~~~f~~~y~~~~~~---------~~~~~~~~~yda~~~~~~A~~~a---~~~~~~~~~v~~al~~~~~~~~~g~~~f~~~ 324 (336)
T cd06360 257 NQAFVKAYRAAYPD---------TPSVYAVQGYDAGQALILALEAV---GGDLSDGQALIAAMAAAKIDSPRGPFTLDKA 324 (336)
T ss_pred HHHHHHHHHHHhCC---------CccHHHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHhcCCccCCCcceEECCC
Confidence 34577777665543 35788999999999999999997 5433467789999999999999999999999
Q ss_pred CCcccCE
Q psy8577 83 GDRLADY 89 (124)
Q Consensus 83 Gdr~~~y 89 (124)
|++....
T Consensus 325 ~~~~~~~ 331 (336)
T cd06360 325 HNPIQDN 331 (336)
T ss_pred CCcccce
Confidence 9875443
No 41
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=98.69 E-value=9.3e-08 Score=72.73 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
..+|.+++++..+. .++.++...||+++++++|++++ +. .++..+.+.|++++|.|++|++.||++
T Consensus 268 ~~~f~~~~~~~~~~---------~p~~~~~~~y~a~~~~~~a~~~a---g~--~~~~~v~~al~~~~~~~~~G~~~f~~~ 333 (345)
T cd06338 268 AAEFAAAYKEKYGK---------APDYHAAGAYAAGQVLQEAVERA---GS--LDPAAVRDALASNDFDTFYGPIKFDET 333 (345)
T ss_pred HHHHHHHHHHHhCC---------CCCcccHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCcccccCeeECCC
Confidence 35677777655543 24557788999999999999987 43 577899999999999999999999999
Q ss_pred CCcccCEEEEE
Q psy8577 83 GDRLADYSLLD 93 (124)
Q Consensus 83 Gdr~~~y~i~~ 93 (124)
|++...+.+.+
T Consensus 334 ~~~~~~~~~~~ 344 (345)
T cd06338 334 GQNNHPMTVVQ 344 (345)
T ss_pred CCcCCCceeee
Confidence 99765555544
No 42
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=98.63 E-value=1.6e-08 Score=78.06 Aligned_cols=42 Identities=21% Similarity=0.461 Sum_probs=36.9
Q ss_pred eccceEEecCCCCcccCEEEEEecCCCCceEEEEEEeCCCCce
Q psy8577 72 GIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNENEELKSGVR 114 (124)
Q Consensus 72 G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g~~ 114 (124)
|+||+|.||++|.| .+|++..++...+..++||+|++..|+.
T Consensus 291 glTg~i~f~~~g~R-~~~~l~v~~l~~~g~~kig~W~~~~gl~ 332 (333)
T cd06394 291 GLTGRIEFNSKGQR-SNYTLKILQKTRSGFRQIGQWHSNETLS 332 (333)
T ss_pred eeecceecCCCCcC-cccEEEEEEecCCcceEEEEEeCCCCcC
Confidence 99999999999999 5898888877777899999999877753
No 43
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=98.61 E-value=2.5e-08 Score=77.81 Aligned_cols=69 Identities=16% Similarity=0.058 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc-------C-C-CCCC-----------hhHHHHHhhcCeeeeccceEEecCCCCcc
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAM-------G-G-SQSD-----------GSAITRRMWNRTYQGIAGDVHIDANGDRL 86 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~-------~-~-~~~~-----------g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~ 86 (124)
....++++||||+++|.|++++... + . .|-+ |..+.++|+.++|+|+||+|.||++|.|
T Consensus 272 ~~~~~aL~~Dav~~~~~a~~~l~~~~~~~~~~~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~i~f~~~g~R- 350 (368)
T cd06383 272 WAFRLFLAYDAVLAVGEWPRRMRKKRVEDGSTGTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGRVAIDEGSSV- 350 (368)
T ss_pred HHHHHHHHHHHHHHhccccchhheeeccCCCcCccccCCCCCCcccchhhcccccccCccceeEeeecCeEEEecCcee-
Confidence 4456899999999999999975321 1 0 1333 3388999999999999999999999988
Q ss_pred cCEEEEEecC
Q psy8577 87 ADYSLLDMDP 96 (124)
Q Consensus 87 ~~y~i~~~~~ 96 (124)
.+|++-.++.
T Consensus 351 ~~~~l~~~~~ 360 (368)
T cd06383 351 STKTIGSWSA 360 (368)
T ss_pred eeeeeeeEec
Confidence 5898888843
No 44
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=98.58 E-value=2.5e-07 Score=70.51 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC------hhHHHHHhhcCeeeeccceE
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSD------GSAITRRMWNRTYQGIAGDV 77 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~------g~~l~~~~~~~~f~G~tG~v 77 (124)
.+|.+.+++..+. .++.++...|||++++++|++++...+. ..+ ...|.++|++.+|.|++|.+
T Consensus 259 ~~f~~~~~~~~g~---------~p~~~~~~~yda~~~~~~A~~~a~~~~~-~~~~~~~~~~~~l~~~l~~~~~~g~~G~v 328 (344)
T cd06348 259 RDFVEAYKKKYGK---------APPQFSAQAFDAVQVVAEALKRLNQKQK-LAELPLPELRTALNAALLSGQYDTPLGEI 328 (344)
T ss_pred HHHHHHHHHHHCC---------CccHHHHHHHHHHHHHHHHHHHhcCCCc-cccchhhhHHHHHHHHHhccCCccceeee
Confidence 4466666544442 3466788999999999999999843221 111 45788899999999999999
Q ss_pred EecCCCCcc
Q psy8577 78 HIDANGDRL 86 (124)
Q Consensus 78 ~fd~~Gdr~ 86 (124)
.||++|++.
T Consensus 329 ~f~~~g~~~ 337 (344)
T cd06348 329 SFTPDGEVL 337 (344)
T ss_pred EECCCCCcc
Confidence 999999974
No 45
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=98.58 E-value=4.6e-07 Score=68.92 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
..+|.+++.+..+. .++.++...||++++++.|++++ +....+...+.+.|+++.|.|++|.++|+.+
T Consensus 254 ~~~f~~~~~~~~~~---------~~~~~~~~~yda~~~~~~A~~~a---g~~~~~~~~v~~al~~~~~~~~~G~~~~~~~ 321 (333)
T cd06359 254 NKKFVADFEKKYGR---------LPTLYAAQAYDAAQLLDSAVRKV---GGNLSDKDALRAALRAADFKSVRGAFRFGTN 321 (333)
T ss_pred HHHHHHHHHHHhCC---------CCcHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhcCccccCccceEECCC
Confidence 34577777555543 35778999999999999999987 5443477889999999999999999999988
Q ss_pred CCcccCEEE
Q psy8577 83 GDRLADYSL 91 (124)
Q Consensus 83 Gdr~~~y~i 91 (124)
|+......+
T Consensus 322 ~~~~~~~~~ 330 (333)
T cd06359 322 HFPIQDFYL 330 (333)
T ss_pred CCcceeEEE
Confidence 875434333
No 46
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=98.50 E-value=1.5e-06 Score=66.80 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC-
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN- 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~- 82 (124)
.+|.+++++..+++. .+..++...|||+++++.||+++ ++ .++..|.++|++++|.+..|.++||+.
T Consensus 257 ~~f~~~y~~~~g~~~-------~~~~~a~~~Y~a~~~~~~Al~~a---g~--~~~~~i~~aL~~~~~~~~~g~~~f~~~~ 324 (348)
T cd06355 257 KKFVAAFKARYGQDR-------VTNDPMEAAYIGVYLWKQAVEKA---GS--FDVDKVRAALPGQSFDAPEGPVTVDPAN 324 (348)
T ss_pred HHHHHHHHHHcCCCC-------CCCcHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHhccCcccCCCcceEeecCC
Confidence 456667766554321 23456788999999999999987 53 578899999999999999999999984
Q ss_pred CCcccCEEEEEecCCCCceEEE
Q psy8577 83 GDRLADYSLLDMDPDTSEFRRN 104 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~~~~~~v 104 (124)
++....+.+.+++ .+++++.|
T Consensus 325 ~~~~~~~~i~~~~-~~g~~~~v 345 (348)
T cd06355 325 HHLWKPVRIGRIQ-ADGQFEIV 345 (348)
T ss_pred CeeeeeeEEEEEc-CCCcEEEE
Confidence 3334455666662 24577665
No 47
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=98.47 E-value=1.2e-06 Score=68.09 Aligned_cols=64 Identities=20% Similarity=0.392 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCc-ccCEEEEEec
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDR-LADYSLLDMD 95 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr-~~~y~i~~~~ 95 (124)
++.++...||++++++.|++++ ++ .++..|.++|++..|.|++|++.||++|++ ...|.|.+|.
T Consensus 296 ~~~~~~~~Y~~~~~l~~Al~~a---G~--~~~~~l~~al~~~~~~~~~G~~~~~~~g~~~~~~~~i~~~~ 360 (369)
T PRK15404 296 SGPFVWTTYAAVQSLAAGINRA---GS--DDPAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWH 360 (369)
T ss_pred CccchHHHHHHHHHHHHHHHhh---CC--CCHHHHHHHHHhCCCCcceEeeEECCCCCcccCCEEEEEEE
Confidence 3457788999999999999987 53 578899999999999999999999999986 4688888883
No 48
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=98.40 E-value=1.8e-06 Score=64.99 Aligned_cols=74 Identities=23% Similarity=0.344 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhc-CeeeeccceEEecC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN-RTYQGIAGDVHIDA 81 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~-~~f~G~tG~v~fd~ 81 (124)
..+|.+.+.+... ..++.++...||++++++.||+++ +. .++..+.+.|.+ .+|+|++|++.||.
T Consensus 257 ~~~f~~~~~~~~~---------~~~~~~~~~~yda~~~~~~Al~~a---g~--~~~~~v~~~l~~~~~~~g~~G~v~f~~ 322 (334)
T cd06347 257 AKKFVKAYKAKYG---------KEPDAFAALGYDAYYLLADAIERA---GS--TDPEAIRDALAKTKDFDGVTGKITIDE 322 (334)
T ss_pred HHHHHHHHHHHHC---------CCcchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCcccceeeeEECC
Confidence 3456666644433 245778899999999999999986 43 367888888764 57999999999999
Q ss_pred CCCcccCEE
Q psy8577 82 NGDRLADYS 90 (124)
Q Consensus 82 ~Gdr~~~y~ 90 (124)
+|+...++.
T Consensus 323 ~g~~~~~~~ 331 (334)
T cd06347 323 NGNPVKSAV 331 (334)
T ss_pred CCCcCCCce
Confidence 998755443
No 49
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=98.36 E-value=5e-06 Score=64.17 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC-C
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA-N 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~-~ 82 (124)
..|.+++++..++. ..+..++...|||+++++.|++++ ++ .++..+.+.|++++|.+..|.++|++ +
T Consensus 258 ~~f~~~~~~~~~~~-------~~~~~~~~~~y~a~~~~~~A~~~a---g~--~~~~~i~~al~~~~~~~~~G~i~f~~~~ 325 (359)
T TIGR03407 258 KKFVKAFKAKYGDD-------RVTNDPMEAAYLGVYLWKAAVEKA---GS--FDVDAVRDAAIGIEFDAPEGKVKVDGKN 325 (359)
T ss_pred HHHHHHHHHHcCCC-------CCCCcHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHhcCCcccCCCccEEEeCCC
Confidence 35666665554421 012345567899999999999987 54 58889999999999999999999997 4
Q ss_pred CCcccCEEEEEecCCCCceEEE
Q psy8577 83 GDRLADYSLLDMDPDTSEFRRN 104 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~~~~~~v 104 (124)
++....+.+.++. .+++|.+|
T Consensus 326 ~~~~~~~~~~~~~-~~g~~~~~ 346 (359)
T TIGR03407 326 HHLTKTVRIGEIR-ADGQFDVV 346 (359)
T ss_pred CeeeeeeEEEEEc-cCCCEEEE
Confidence 4444455666662 25677665
No 50
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=98.33 E-value=6.3e-06 Score=63.66 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++++..+++ ..++.++...||+++++++|++++ ++ .+...|+++|++++|.+..|.+.||..+
T Consensus 258 ~~f~~~~~~~~g~~-------~~~~~~~~~~yda~~~l~~Al~~a---g~--~~~~~v~~aL~~~~~~~~~g~~~f~~~~ 325 (360)
T cd06357 258 RAFVARYRARFGED-------APVSACAEAAYFQVHLFARALQRA---GS--DDPEDVLAALLGFSFDAPQGPVRIDPDN 325 (360)
T ss_pred HHHHHHHHHHcCCC-------CCCCcHHHHHHHHHHHHHHHHHHc---CC--CCHHHHHHHhccCcccCCCcceEEeCCC
Confidence 34777776666431 024668899999999999999986 54 4677899999999999999999999765
Q ss_pred Cc-ccCEEEEEecCCCCceEEEEEEe
Q psy8577 84 DR-LADYSLLDMDPDTSEFRRNENEE 108 (124)
Q Consensus 84 dr-~~~y~i~~~~~~~~~~~~vg~~~ 108 (124)
+. .....+.+++ .+|+|..+..-.
T Consensus 326 ~~~~~~~~~~~~~-~~G~~~~~~~~~ 350 (360)
T cd06357 326 NHTYLWPRIARVN-ADGQFDIVRESS 350 (360)
T ss_pred CeeeeeeEEEEEc-CCCCEEEEEccC
Confidence 43 2344444552 366887775443
No 51
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=98.32 E-value=1.2e-05 Score=62.81 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhc-CeeeeccceEEecCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN-RTYQGIAGDVHIDAN 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~-~~f~G~tG~v~fd~~ 82 (124)
..|.++++++.+.+ + .++.++...|||+++++.|++++ ++ .++..+.++|++ .+|.|.+|.++||++
T Consensus 256 ~~F~~~y~~~~g~~------p-~~~~~a~~~Yda~~~l~~Ai~~A---Gs--~d~~av~~aL~~~~~~~~~~G~i~fd~~ 323 (374)
T TIGR03669 256 EAFVERFYAKFPDA------P-YINQEAENNYFSVYMYKQAVEEA---GT--TDQDAVRDVLESGVEMDAPEGKVCIDGA 323 (374)
T ss_pred HHHHHHHHHHcCCC------C-CCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHcCCeEECCCccEEEcCC
Confidence 35777776665421 0 23557888999999999999987 54 688899999986 679999999999976
Q ss_pred CC-cccCEEEEEecCCCCceEEEEEEe
Q psy8577 83 GD-RLADYSLLDMDPDTSEFRRNENEE 108 (124)
Q Consensus 83 Gd-r~~~y~i~~~~~~~~~~~~vg~~~ 108 (124)
+. ....+.|..++. ++.+..+..|+
T Consensus 324 ~~~~~~~~~v~~~~~-~~~~~~~~~~~ 349 (374)
T TIGR03669 324 THHMSHTMRLARADA-DHNITFVKEQE 349 (374)
T ss_pred CCeeeeeeEEEEEcC-CCCEEEEEecC
Confidence 54 334566777743 44577776676
No 52
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=98.25 E-value=1.5e-06 Score=65.49 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhcCCCCcc-cCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 3 FDFTAVKVKKVAKEGYNFT-FGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~-~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
+.+|.++.++..+.. |. ..+..+..+++..||||+++ ||+++||+
T Consensus 247 ~~~f~~~~~~~~~~~--~~~~~~~~p~~~aa~~yDav~~~--------------------------------tg~~~f~~ 292 (324)
T cd06368 247 VQKFIQRWERSDHRI--CPGSGLKPIKTESALTYDAVLLF--------------------------------TGRIQFDE 292 (324)
T ss_pred HHHHHHHHHhccccc--cCCCCCCCcchhhHhhhcEEEEe--------------------------------eeeeEeCC
Confidence 455666665544321 11 12235778899999999987 89999999
Q ss_pred CCCcccCEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 82 NGDRLADYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 82 ~Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
+|+| .+|++..++...+.+..||.|++..|+
T Consensus 293 ~g~~-~~~~~~i~~~~~~~~~~~g~W~~~~~~ 323 (324)
T cd06368 293 NGQR-SNFTLDILELKEGGLRKVGTWNPEDGL 323 (324)
T ss_pred CCcC-cceEEEEEEEcCCCceEEEEECCCCCC
Confidence 9998 355555554467789999999876553
No 53
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=98.23 E-value=5.1e-06 Score=63.10 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++++..+.. ..++.++...|||+++++.|++++ ++ .++..|.++|++++|.|++|.+.||+.+
T Consensus 256 ~~f~~~~~~~~~~~-------~~~~~~~~~~yda~~~~~~A~~~a---g~--~~~~~l~~al~~~~~~~~~G~i~f~~~~ 323 (333)
T cd06331 256 KAFVARYRARYGDD-------AVINSPAEAAYEAVYLWAAAVEKA---GS--TDPEAVRAALEGVSFDAPQGPVRIDPDN 323 (333)
T ss_pred HHHHHHHHHHcCCC-------cCCCchhHHHHHHHHHHHHHHHHc---CC--CCHHHHHHHhhcCcccCCCCceEecCCC
Confidence 35666665544321 035778999999999999999986 43 5788999999999999999999999887
Q ss_pred Ccc
Q psy8577 84 DRL 86 (124)
Q Consensus 84 dr~ 86 (124)
.+.
T Consensus 324 ~~~ 326 (333)
T cd06331 324 HHT 326 (333)
T ss_pred Ccc
Confidence 764
No 54
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=98.19 E-value=4.5e-06 Score=63.46 Aligned_cols=69 Identities=23% Similarity=0.204 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHH-HHhhcCeeeeccceEEecCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAIT-RRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~-~~~~~~~f~G~tG~v~fd~~ 82 (124)
.+|.+.+++..+. .++.++...||+++++++|++++ ++ .++..+. ..++...|.|.+|+++||++
T Consensus 256 ~~f~~~~~~~~~~---------~~~~~a~~~Yda~~~l~~A~~~a---g~--~~~~~~~~~~~~~~~~~g~~g~i~f~~~ 321 (332)
T cd06344 256 SPFAKLAQQLWGG---------DVSWRTATAYDATKALIAALSQG---PT--REGVQQVELSLRNFSVQGATGKIKFLPS 321 (332)
T ss_pred hHHHHHHHHHhcC---------CchHHHHhHHHHHHHHHHHHHhC---CC--hhhhhhhhhhcccccccCCCceeEeCCC
Confidence 4566666655543 25778999999999999999986 43 4555555 56778889999999999999
Q ss_pred CCcc
Q psy8577 83 GDRL 86 (124)
Q Consensus 83 Gdr~ 86 (124)
||+.
T Consensus 322 g~~~ 325 (332)
T cd06344 322 GDRN 325 (332)
T ss_pred Cccc
Confidence 9974
No 55
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=98.18 E-value=1.8e-05 Score=61.50 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCe-eeeccceEEecCCC
Q psy8577 5 FTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT-YQGIAGDVHIDANG 83 (124)
Q Consensus 5 ~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~-f~G~tG~v~fd~~G 83 (124)
.|.+++++..++| ..++.++...|||+++++.|++++.. ..+...+.++|+... +.+.+|.+.||++|
T Consensus 272 ~f~~~~~~~~g~~-------~~~~~~~~~~y~a~~~~~~ai~~a~~----~~d~~~v~~al~~~~~~~~~~G~v~~~~~~ 340 (366)
T COG0683 272 KFVEAYKAKYGDP-------AAPSYFAAAAYDAVKLLAKAIEKAGK----SSDREAVAEALKGGKFFDTAGGPVTFDEKG 340 (366)
T ss_pred HHHHHHHHHhCCC-------CCcccchHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHhhCCCCccCCcceeECCCC
Confidence 3667776666532 35667999999999999999999832 244777999998776 68899999999999
Q ss_pred Cc-ccCEEEEEec
Q psy8577 84 DR-LADYSLLDMD 95 (124)
Q Consensus 84 dr-~~~y~i~~~~ 95 (124)
++ ...+.|..|.
T Consensus 341 ~~~~~~~~i~~~~ 353 (366)
T COG0683 341 DRGSKPVYVGQVQ 353 (366)
T ss_pred CcCCCceEEEEEE
Confidence 97 5688888884
No 56
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=98.11 E-value=2.6e-05 Score=59.27 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++.+..+.+ +..++.++...||++++++.|++++ +. .++..|.+.|++++|.|++|.+.|+.++
T Consensus 255 ~~f~~~~~~~~g~~------~~~~~~~~~~~yda~~~~~~A~~~a---g~--~~~~~v~~al~~~~~~~~~G~~~~~~~~ 323 (333)
T cd06358 255 AAFLARYRARFGDD------APPLNSLSESCYEAVHALAAAAERA---GS--LDPEALIAALEDVSYDGPRGTVTMRGRH 323 (333)
T ss_pred HHHHHHHHHHcCCC------CCCCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHhccCeeeCCCcceEEcccc
Confidence 45666665554321 1235678889999999999999976 43 6788999999999999999999999886
Q ss_pred Cccc
Q psy8577 84 DRLA 87 (124)
Q Consensus 84 dr~~ 87 (124)
...+
T Consensus 324 ~~~~ 327 (333)
T cd06358 324 ARQP 327 (333)
T ss_pred cccc
Confidence 5433
No 57
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=98.08 E-value=3e-05 Score=58.54 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC-
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN- 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~- 82 (124)
.+|.+++++..+.. ..++.++...||++.+++.||+++ +. .++..+.++|+.++|+|++|.+.|+..
T Consensus 259 ~~f~~~~~~~~~~~-------~~~~~~~~~~yda~~~~~~al~~~---g~--~~~~~v~~al~~~~~~g~~g~~~~~~~~ 326 (343)
T PF13458_consen 259 KQFQERYRAAYGEE-------PPPSLYAAQGYDAARLLAQALERA---GS--LDREAVREALESLKYDGLFGPISFDPPD 326 (343)
T ss_dssp HHHHHHHHHHHSST-------GGTCHHHHHHHHHHHHHHHHHHHH---TS--HHHHHHHHHHHTSEEEETTEEEEEETTT
T ss_pred HHHHHHHHHHcCCC-------CCCchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCcccccceEEeCCC
Confidence 45777777666531 036789999999999999999997 42 788899999999999999999999754
Q ss_pred CCcccCEEEEEe
Q psy8577 83 GDRLADYSLLDM 94 (124)
Q Consensus 83 Gdr~~~y~i~~~ 94 (124)
+.....+.|.++
T Consensus 327 ~~~~~~~~i~~v 338 (343)
T PF13458_consen 327 HQANKPVYIVQV 338 (343)
T ss_dssp SBEEEEEEEEEE
T ss_pred CccccCeEEEEE
Confidence 433456666666
No 58
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=97.98 E-value=3.5e-05 Score=59.04 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHH--HHhhcCeeee---ccceEE
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAIT--RRMWNRTYQG---IAGDVH 78 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~--~~~~~~~f~G---~tG~v~ 78 (124)
.+|.+++++..+. .++.++...||+++++++|++++ ++ .++..+. .+|++..+.+ .+|+++
T Consensus 267 ~~f~~~y~~~~~~---------~~~~~~~~~Y~a~~~l~~A~~~a---g~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~ 332 (347)
T cd06340 267 KDLNKRFKARFGV---------DLSGNSARAYTAVLVIADALERA---GS--ADPEKIRDLAALASTSGEDLIMPYGPIK 332 (347)
T ss_pred HHHHHHHHHHhCC---------CCChHHHHHHHHHHHHHHHHHHh---cC--CCHHHHHHHHHhccCCccccccCCCCee
Confidence 4577777666543 25778899999999999999987 43 5777888 4787777764 578999
Q ss_pred ecCCCCccc
Q psy8577 79 IDANGDRLA 87 (124)
Q Consensus 79 fd~~Gdr~~ 87 (124)
||++|+...
T Consensus 333 f~~~g~~~~ 341 (347)
T cd06340 333 FDAKGQNTN 341 (347)
T ss_pred ECCCCCccc
Confidence 999999643
No 59
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=97.98 E-value=2.6e-05 Score=60.09 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
..|.++++++.+.+ +...+.+.||++++++.||+++ ++. .++..|.++|++.+|.++.|++.||++
T Consensus 277 ~~~~~~y~~~~g~~---------~~~~~~~~~~~~~~l~~Ai~~A---gs~-~d~~~v~~aL~~~~~~~~~G~~~f~~~- 342 (357)
T cd06337 277 AELADAYEAATGRQ---------WTQPLGYAHALFEVGVKALVRA---DDP-DDPAAVADAIATLKLDTVVGPVDFGNS- 342 (357)
T ss_pred HHHHHHHHHHhCCC---------ccCcchHHHHHHHHHHHHHHHc---CCC-CCHHHHHHHHHcCCcccceeeeecCCC-
Confidence 45666666555442 2344577899999999999987 432 467789999999999999999999865
Q ss_pred CcccCEEEEEe
Q psy8577 84 DRLADYSLLDM 94 (124)
Q Consensus 84 dr~~~y~i~~~ 94 (124)
...+..|..+
T Consensus 343 -~~~~~~~~~~ 352 (357)
T cd06337 343 -PIKNVAKTPL 352 (357)
T ss_pred -CCcccccccc
Confidence 3334444444
No 60
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.91 E-value=2.2e-05 Score=59.23 Aligned_cols=55 Identities=36% Similarity=0.483 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.++++++.+. .|+.+++..||+++++++| |.|++|.+.||++|
T Consensus 257 ~~f~~~~~~~~g~---------~p~~~~~~~Yd~~~~l~~A-------------------------~~g~~g~~~f~~~g 302 (312)
T cd06346 257 EAFTSAYKAAYGE---------SPSAFADQSYDAAALLALA-------------------------YQGASGVVDFDENG 302 (312)
T ss_pred HHHHHHHHHHhCC---------CCCccchhhHHHHHHHHHH-------------------------hCCCccceeeCCCC
Confidence 4677777766654 2567889999999999988 89999999999999
Q ss_pred CcccCEEEE
Q psy8577 84 DRLADYSLL 92 (124)
Q Consensus 84 dr~~~y~i~ 92 (124)
++..+|+.+
T Consensus 303 ~~~~~~~~~ 311 (312)
T cd06346 303 DVAGSYDEW 311 (312)
T ss_pred Ccccceeee
Confidence 987676654
No 61
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=97.88 E-value=6.7e-05 Score=57.13 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
.+|.+++++..+. .++.++...||++++++.|++++......... ..+.++|++++|.|++|.+.|+++
T Consensus 265 ~~f~~~~~~~~g~---------~p~~~~~~~y~a~~~l~~a~~~a~~~~~~~~~-~~v~~al~~~~~~~~~G~~~f~~~ 333 (346)
T cd06330 265 KAFVDAYQEKYGD---------YPTYGAYGAYQAVMALAAAVEKAGATDGGAPP-EQIAAALEGLSFETPGGPITMRAA 333 (346)
T ss_pred HHHHHHHHHHHCC---------CCChHHHHHHHHHHHHHHHHHHhcCCCCCCcH-HHHHHHHcCCCccCCCCceeeecC
Confidence 4566777655543 24567889999999999999987321111111 469999999999999999999874
No 62
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.84 E-value=0.00017 Score=54.86 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHH-hhcCeeeeccceEEecCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRR-MWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~-~~~~~f~G~tG~v~fd~~ 82 (124)
.+|.+++.+..+. .++.++...||++++++.|++++ ++ .....+... +....+.|.+|.++|+.+
T Consensus 257 ~~f~~~~~~~~~~---------~p~~~~~~~y~~~~~~~~a~~~a---g~--~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 322 (340)
T cd06349 257 QSFVSAYEAKYGA---------QPDAFAAQAYDAVGILAAAVRRA---GT--DRRAARDGFAKAEDVYSGVTGSTKFDPN 322 (340)
T ss_pred HHHHHHHHHHHCC---------CcchhhhhHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhccCcccceEeEEECCC
Confidence 4566666554442 25678899999999999999987 53 232233232 234457889999999986
Q ss_pred -CCcccCEEEEEe
Q psy8577 83 -GDRLADYSLLDM 94 (124)
Q Consensus 83 -Gdr~~~y~i~~~ 94 (124)
+++...|.+..+
T Consensus 323 ~~~~~~~~~~~~~ 335 (340)
T cd06349 323 TRRVIKRFVPLVV 335 (340)
T ss_pred CCCccCceEEEEE
Confidence 665556776666
No 63
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=97.82 E-value=0.0001 Score=56.33 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
.+|.+++++..+. .++.++...||++++++.|++++ ++ .++..+.++|++++|+|.+|.++|+.
T Consensus 267 ~~f~~~~~~~~~~---------~~~~~~~~~y~~~~~~~~a~~~a---g~--~~~~~v~~al~~~~~~~~~g~~~~~~ 330 (342)
T cd06329 267 RAFVEAFKAKYGR---------VPDYYEGQAYNGIQMLADAIEKA---GS--TDPEAVAKALEGMEVDTPVGPVTMRA 330 (342)
T ss_pred HHHHHHHHHHhCC---------CCCchHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhCCccccCCCCeEEcc
Confidence 4577777655542 34667899999999999999986 43 57788999999999999999999984
No 64
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=97.79 E-value=0.00012 Score=55.76 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
+.|.+++++..+. .++.++...||++.+++.|++++ + ..+...+.++|++.+|.++.|.++|+.
T Consensus 258 ~~f~~~y~~~~g~---------~p~~~~~~~y~a~~~l~~Ai~~a---g--~~~~~~v~~aL~~~~~~~~~g~~~f~~ 321 (333)
T cd06328 258 DWLVEEHKARFGS---------PPDLFTAGGMSAAIAVVEALEET---G--DTDTEALIAAMEGMSFETPKGTMTFRK 321 (333)
T ss_pred HHHHHHHHHHhCC---------CcchhhHHHHHHHHHHHHHHHHh---C--CCCHHHHHHHHhCCeeecCCCceEECc
Confidence 3466666555443 35778999999999999999987 4 267889999999999999999999985
No 65
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=97.78 E-value=0.00011 Score=55.72 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCe-eeeccceEEecC-
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT-YQGIAGDVHIDA- 81 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~-f~G~tG~v~fd~- 81 (124)
.+|.+++++..+. .++.++...||+++++++||+++ ++ .++..+.++|+++. +.+++|.++|+.
T Consensus 258 ~~f~~~~~~~~g~---------~p~~~~~~~Y~~~~~~~~A~~~a---g~--~~~~~v~~al~~~~~~~~~~g~~~~~~~ 323 (334)
T cd06327 258 RAFVKRFQAKYGK---------MPSMVQAGAYSAVLHYLKAVEAA---GT--DDADKVVAKMKETPIYDLFAGNGYIRAC 323 (334)
T ss_pred HHHHHHHHHHHCc---------CCCcHHHHHHHHHHHHHHHHHHH---CC--CChHHHHHhccccceeccCCCCceeecc
Confidence 4577777665543 24668889999999999999998 54 56778999998865 577889999986
Q ss_pred CCCc
Q psy8577 82 NGDR 85 (124)
Q Consensus 82 ~Gdr 85 (124)
+|+.
T Consensus 324 ~~~~ 327 (334)
T cd06327 324 DHQM 327 (334)
T ss_pred ccch
Confidence 6664
No 66
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=97.75 E-value=9.8e-05 Score=56.58 Aligned_cols=70 Identities=21% Similarity=0.193 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHH-hh-------cCeeeeccc
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRR-MW-------NRTYQGIAG 75 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~-~~-------~~~f~G~tG 75 (124)
.+|.+++.+..+. .++.++...||+++++++|++++ +. .+...+... ++ ..+|.++.|
T Consensus 264 ~~f~~~~~~~~~~---------~p~~~~~~~y~~~~~~~~Al~~a---g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (347)
T cd06336 264 KAFVEEYKKRYGE---------PPNSEAAVSYDAVYILKAAMEAA---GS--VDDTAAVAALAAMLGVGKPAFGYARWWG 329 (347)
T ss_pred HHHHHHHHHHHCC---------CCcHHHHHHHHHHHHHHHHHHhc---CC--CCcHHHHHHHhhccCCCcCccccccccc
Confidence 3477777665543 25678899999999999999987 43 334444443 33 367888999
Q ss_pred eEEecCCCCccc
Q psy8577 76 DVHIDANGDRLA 87 (124)
Q Consensus 76 ~v~fd~~Gdr~~ 87 (124)
.+.||++||...
T Consensus 330 ~~~~~~~~~~~~ 341 (347)
T cd06336 330 KELFGVNGALVG 341 (347)
T ss_pred cccccCCCcccc
Confidence 999999999754
No 67
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=97.73 E-value=0.00019 Score=55.78 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCee--eeccc-eEEec
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTY--QGIAG-DVHID 80 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f--~G~tG-~v~fd 80 (124)
.+|.+++++..+. .|..+++..||||++++.|++++ ++ .++..++++|+...+ .+..| .++|+
T Consensus 235 ~~f~~~f~~~~g~---------~p~~~~a~aY~av~~~a~Ai~~A---Gs--~d~~aV~~aL~~~~~~~~~~~g~~~~~R 300 (347)
T TIGR03863 235 TQLQSRFEKLAGR---------PMTELDYAAWLAVRAVGEAVTRT---RS--ADPATLRDYLLSDEFELAGFKGRPLSFR 300 (347)
T ss_pred HHHHHHHHHHhCC---------CCChHHHHHHHHHHHHHHHHHHh---cC--CCHHHHHHHHcCCCceecccCCCcceee
Confidence 4677777666654 24567888999999999999998 54 799999999998776 46777 69998
Q ss_pred C-CCCcccC
Q psy8577 81 A-NGDRLAD 88 (124)
Q Consensus 81 ~-~Gdr~~~ 88 (124)
+ +++..-+
T Consensus 301 ~~Dhq~~~~ 309 (347)
T TIGR03863 301 PWDGQLRQP 309 (347)
T ss_pred CCCcccccc
Confidence 5 6664333
No 68
>KOG4440|consensus
Probab=97.72 E-value=4e-05 Score=63.42 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-------------CCCCChhHHHHHhhc-CeeeeccceEEecCCCCcc-cCEEEEEe
Q psy8577 30 FVTAFYDAVILYSIALNETIAMG-------------GSQSDGSAITRRMWN-RTYQGIAGDVHIDANGDRL-ADYSLLDM 94 (124)
Q Consensus 30 ~~~~~yDAV~l~a~Al~~~~~~~-------------~~~~~g~~l~~~~~~-~~f~G~tG~v~fd~~Gdr~-~~y~i~~~ 94 (124)
..+.+-|+|+.+|.|+++++.+. ..|..|..|...++. .--.|.||+|.||++|||. ..|+|+++
T Consensus 283 ~~~hirDsv~vlasAv~e~~~~e~I~~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi~a~YdiiN~ 362 (993)
T KOG4440|consen 283 ESAHIRDSVGVLASAVHELLEKENITDPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTGRVEFNDDGDRIFANYDIINL 362 (993)
T ss_pred ccceehhhHHHHHHHHHHHHhhccCCCCCCcccCccchhcccHHHHHHHhhhcccCCcceeEEEcCCCceeeccceeEeh
Confidence 45778899999999999998631 136778888777654 4457899999999999995 69999998
Q ss_pred cCCCCceEEEEEEeC
Q psy8577 95 DPDTSEFRRNENEEL 109 (124)
Q Consensus 95 ~~~~~~~~~vg~~~~ 109 (124)
. ...+.+-++.||.
T Consensus 363 h-q~rk~Vg~~~yd~ 376 (993)
T KOG4440|consen 363 H-QNRKLVGVGIYDG 376 (993)
T ss_pred h-hhhhhhhhccccc
Confidence 4 2234555666653
No 69
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=97.67 E-value=4.9e-05 Score=58.23 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCCcccCCCch-hhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 5 FTAVKVKKVAKEGYNFTFGNESV-STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 5 ~f~~~v~~~~~~~~~~~~~~~~~-~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.|.+++++..+. .| +.+++..|||+.+++.++++. +. .. ..++...|+|++|.++||++|
T Consensus 267 ~f~~~y~~~~~~---------~p~~~~~a~~YDa~~l~~~~~~~~---~~--~~-----al~~~~~~~g~~G~~~f~~~g 327 (336)
T cd06339 267 NFELRYRAAYGW---------PPLSRLAALGYDAYALAAALAQLG---QG--DA-----ALTPGAGFSGVTGVLRLDPDG 327 (336)
T ss_pred chhhhHHHHhcC---------CCCchHHHHHHhHHHHHHHHHHcc---cc--cc-----ccCCCCccccCcceEEECCCC
Confidence 456666554443 24 779999999999999887754 22 12 222345799999999999999
Q ss_pred Ccc
Q psy8577 84 DRL 86 (124)
Q Consensus 84 dr~ 86 (124)
+..
T Consensus 328 ~~~ 330 (336)
T cd06339 328 VIE 330 (336)
T ss_pred eEE
Confidence 853
No 70
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=97.56 E-value=0.00049 Score=52.48 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcC-CCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhc-CeeeeccceEEecC
Q psy8577 4 DFTAVKVKKVAKE-GYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN-RTYQGIAGDVHIDA 81 (124)
Q Consensus 4 ~~f~~~v~~~~~~-~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~-~~f~G~tG~v~fd~ 81 (124)
.+|.++++++.+. | ..+.++...||++++++.|++++ ++ .++..|.++|+. ..|+|..|++.||.
T Consensus 256 ~~f~~~~~~~~~~~p--------~~~~~~~~~y~a~~~~~~A~~~a---g~--~~~~~v~~aL~~~~~~~~~~g~~~~~~ 322 (334)
T cd06356 256 KAFVERFRAKFPDAP--------YINEEAENNYEAIYLYKEAVEKA---GT--TDRDAVIEALESGLVCDGPEGKVCIDG 322 (334)
T ss_pred HHHHHHHHHHcCCCC--------CCCchhHHHHHHHHHHHHHHHHH---CC--CCHHHHHHHHHhCCceeCCCceEEEec
Confidence 4577777665532 1 12567899999999999999987 53 678899999986 67899999999996
Q ss_pred CC
Q psy8577 82 NG 83 (124)
Q Consensus 82 ~G 83 (124)
.+
T Consensus 323 ~~ 324 (334)
T cd06356 323 KT 324 (334)
T ss_pred CC
Confidence 43
No 71
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=97.52 E-value=0.0014 Score=51.46 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCC
Q psy8577 5 FTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGD 84 (124)
Q Consensus 5 ~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gd 84 (124)
.|.++++++.+.+ ..++..+..+|-+|+|+|+|++++ ++ .+...+.+++...+|..-.|.|++|....
T Consensus 259 ~Fv~~~~~~~g~~-------~v~s~~~eaaY~~v~l~a~Av~~a---gs--~d~~~vr~al~g~~~~aP~G~v~id~~n~ 326 (363)
T PF13433_consen 259 AFVARFRARYGDD-------RVTSDPMEAAYFQVHLWAQAVEKA---GS--DDPEAVREALAGQSFDAPQGRVRIDPDNH 326 (363)
T ss_dssp HHHHHHHTTS-TT-----------HHHHHHHHHHHHHHHHHHHH---TS----HHHHHHHHTT--EEETTEEEEE-TTTS
T ss_pred HHHHHHHHHhCCC-------CCCCcHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHhcCCeecCCCcceEEcCCCC
Confidence 4777776666543 246777788999999999999998 54 68889999999999999999999998433
Q ss_pred c-ccCEEEEEecCCCCceEEE
Q psy8577 85 R-LADYSLLDMDPDTSEFRRN 104 (124)
Q Consensus 85 r-~~~y~i~~~~~~~~~~~~v 104 (124)
- .-.--|-.++ .+|+|..|
T Consensus 327 H~~l~~rIg~~~-~dG~f~Iv 346 (363)
T PF13433_consen 327 HTWLPPRIGRVN-ADGQFDIV 346 (363)
T ss_dssp BEEB--EEEEE--TTS-EEEE
T ss_pred eecccceEEEEc-CCCCEEEE
Confidence 2 2233444443 35788877
No 72
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=97.40 E-value=0.00025 Score=53.88 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=29.3
Q ss_pred eEEecCCCCcccCEEEEEecC--CCCceEEEEEEeCC
Q psy8577 76 DVHIDANGDRLADYSLLDMDP--DTSEFRRNENEELK 110 (124)
Q Consensus 76 ~v~fd~~Gdr~~~y~i~~~~~--~~~~~~~vg~~~~~ 110 (124)
.+.||++|||.+.|.+..++. ....+++||.|++.
T Consensus 304 ~v~f~~~gd~~~~~~i~~~~~~~~~~~~~~vg~~~~~ 340 (348)
T cd06350 304 EVKFDENGDRLASYDIINWQIFPGGGGFVKVGFWDPQ 340 (348)
T ss_pred EEEecCCCCcccceeEEEEEEcCCcEEEEEEEEEcCC
Confidence 899999999998999998843 23589999999863
No 73
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.19 E-value=0.0035 Score=48.00 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCee---eecc-ceEEecCCCCc-ccCEEEEEe
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTY---QGIA-GDVHIDANGDR-LADYSLLDM 94 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f---~G~t-G~v~fd~~Gdr-~~~y~i~~~ 94 (124)
++.++...||++.++++|++++ +. ..+...+.++|+++++ .+.. |.+.|+....+ ...+.|..+
T Consensus 289 ~~~~~~~~y~a~~~~~~a~~~a---g~-~~~~~~v~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 357 (362)
T cd06343 289 PDTYAVYGYAAAETLVKVLKQA---GD-DLTRENIMKQAESLKDVLPDLLPGIRINTSPDDHLPIEQMQLMRF 357 (362)
T ss_pred CchhhhHHHHHHHHHHHHHHHh---CC-CCCHHHHHHHHHhCCCCCccccCccceecCccccccceeEEEEEE
Confidence 5778899999999999999987 43 2577899999999887 3333 48999765322 334445444
No 74
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=96.78 E-value=0.001 Score=49.68 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=29.1
Q ss_pred cceEEecCCCCcccCEEEEEecCC-CCceEEEEEEeC
Q psy8577 74 AGDVHIDANGDRLADYSLLDMDPD-TSEFRRNENEEL 109 (124)
Q Consensus 74 tG~v~fd~~Gdr~~~y~i~~~~~~-~~~~~~vg~~~~ 109 (124)
||.+.||++|+|. +|.+..++.. ...++.||.|+.
T Consensus 287 tg~i~f~~~g~r~-~~~l~i~~l~~~~~~~~vg~W~~ 322 (328)
T cd06351 287 TGTVSFDEDGVRS-NFTLDIIELNRSRGWRKVGTWNG 322 (328)
T ss_pred EeeEEECCCCccc-ceEEEEEEecCCCCceEEEEecC
Confidence 8999999999995 7777777656 678999999973
No 75
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=96.13 E-value=0.016 Score=43.72 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccc-eEEecC
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAG-DVHIDA 81 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG-~v~fd~ 81 (124)
++.++...||++++++.|++++ ++. .++..+.++|++++.....| .+.|+.
T Consensus 275 ~~~~~~~~y~~~~~~~~a~~~~---g~~-~~~~~v~~al~~~~~~~~~g~~~~~~~ 326 (336)
T cd06326 275 PSYVSLEGYIAAKVLVEALRRA---GPD-PTRESLLAALEAMGKFDLGGFRLDFSP 326 (336)
T ss_pred CCeeeehhHHHHHHHHHHHHHc---CCC-CCHHHHHHHHHhcCCCCCCCeEEecCc
Confidence 4567788999999999999986 432 46788999999877755555 899954
No 76
>KOG1052|consensus
Probab=95.71 E-value=0.1 Score=43.69 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc-------C--CCCCChhHHHHHhhcCeeee---ccceEEecCCCCcc-cCEEEEE
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAM-------G--GSQSDGSAITRRMWNRTYQG---IAGDVHIDANGDRL-ADYSLLD 93 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~-------~--~~~~~g~~l~~~~~~~~f~G---~tG~v~fd~~Gdr~-~~y~i~~ 93 (124)
.+.++..+||+++++|.|+++.... + ..|.++..+.+.++.....+ .+|.+.++..+.+. ..|.+++
T Consensus 97 ~~~~~~~~~D~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 176 (656)
T KOG1052|consen 97 LLVYALWAYDAIQALARAVESLLNIGNLSLSCGRNNSWLDALGVFNFGKKLLVVNLSGVTGQFQFFRGGLLEYFKYEILN 176 (656)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcCCCCceecCCCCcccchhHHHHHHHhhhhhccccceeEEEecCCCccccceEEEEE
Confidence 5778999999999999999998631 1 24566777777776654444 45667776666663 4666666
Q ss_pred ecCCCCceEEEEEEeCCCC
Q psy8577 94 MDPDTSEFRRNENEELKSG 112 (124)
Q Consensus 94 ~~~~~~~~~~vg~~~~~~g 112 (124)
+ .......||.|++..|
T Consensus 177 ~--~~~~~~~ig~W~~~~~ 193 (656)
T KOG1052|consen 177 L--NGSGERRIGYWYPRGG 193 (656)
T ss_pred e--cCcCceeEEEecCCCC
Confidence 6 4444455999998665
No 77
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=95.70 E-value=0.043 Score=41.96 Aligned_cols=66 Identities=24% Similarity=0.240 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhcCC-CCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcC--eeeeccceE
Q psy8577 3 FDFTAVKVKKVAKEG-YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR--TYQGIAGDV 77 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~-~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~--~f~G~tG~v 77 (124)
..+|.++++++.+.+ .+ + ..++.++...||+++++++|++++ +. ..+..+.++|+++ .+.|+.|..
T Consensus 260 ~~~f~~~~~~~~~~~~~~---~-~~~~~~~~~aYd~~~~l~~A~~~a---g~--~~~~~v~~al~~~~~~~~G~~~~~ 328 (347)
T cd06335 260 AKAFLAAYHKKYPEKKPA---D-IPAPVGAAHAYDAVHLLAAAIKQA---GS--TDGRAIKRALENLKKPVEGLVKTY 328 (347)
T ss_pred HHHHHHHHHHHhCCCccc---c-cCcchhHHHHHHHHHHHHHHHHHh---cC--CCHHHHHHHHHhccCCceeeeccc
Confidence 356888887766532 11 0 024556788999999999999987 43 3457888888765 467777643
No 78
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=95.46 E-value=0.029 Score=42.53 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=38.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhH-HHHHhhcCeeeeccc-eEEec
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSA-ITRRMWNRTYQGIAG-DVHID 80 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~-l~~~~~~~~f~G~tG-~v~fd 80 (124)
.++.++...||++++++.||+++ +.. .+... ++++|++++.....| .+.++
T Consensus 272 ~~~~~~~~~yda~~~~~~a~~~a---g~~-~~~~~~v~~al~~~~~~~~~g~~~~~~ 324 (341)
T cd06341 272 PEQGFALIGYIAADLFLRGLSGA---GGC-PTRASQFLRALRAVTDYDAGGLTPPCD 324 (341)
T ss_pred CcchHHHHHHHHHHHHHHHHHhc---CCC-CChHHHHHHHhhcCCCCCCCCcccCcc
Confidence 46778999999999999999987 432 34566 999999887665555 45554
No 79
>KOG1053|consensus
Probab=93.81 E-value=0.37 Score=42.22 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC---------------CCCCChhHHHHHhhcCeeeeccceEEecCCCCc-ccCEEE
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMG---------------GSQSDGSAITRRMWNRTYQGIAGDVHIDANGDR-LADYSL 91 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~---------------~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr-~~~y~i 91 (124)
..+...+-|+|-++|.|...++... .....+..+..+|.|++|+| +.++|++.|-. .+...+
T Consensus 293 ~~l~~rVrdgvaiva~aa~s~~~~~~~lp~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g--~~lsf~~~g~~v~p~lvv 370 (1258)
T KOG1053|consen 293 YSLEARVRDGVAIVARAASSMLRIHGFLPEPKMDCREQEETRLTSGETLHRFLANVTWDG--RDLSFNEDGYLVHPNLVV 370 (1258)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHhhcccCCCcccccccccCccccchhhhhhhhheeeecc--cceeecCCceeeccceEE
Confidence 3456788999999999999986421 01246777889999999998 68999999864 344444
Q ss_pred EEecCCCCceEEEEEEeC
Q psy8577 92 LDMDPDTSEFRRNENEEL 109 (124)
Q Consensus 92 ~~~~~~~~~~~~vg~~~~ 109 (124)
+.++ ....|..||.|..
T Consensus 371 I~l~-~~r~We~VG~We~ 387 (1258)
T KOG1053|consen 371 IDLN-RDRTWERVGSWEN 387 (1258)
T ss_pred EecC-CCcchheeceecC
Confidence 4442 3458999999953
No 80
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=91.31 E-value=1.1 Score=34.50 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCCC-CCChh-H------HHHHhhcCeeeeccceEEec
Q psy8577 26 SVSTFVTAFYDAVILYSIALNETIAMGGS-QSDGS-A------ITRRMWNRTYQGIAGDVHID 80 (124)
Q Consensus 26 ~~~~~~~~~yDAV~l~a~Al~~~~~~~~~-~~~g~-~------l~~~~~~~~f~G~tG~v~fd 80 (124)
.++.++...|||+++++.||+++-..... ...+. . .++.+++....|+.|.+++.
T Consensus 281 ~~~~~~~~gy~a~~~l~~Al~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 343 (351)
T cd06334 281 IGSVYYNRGVVNAMIMVEAIRRAQEKGGETTIAGEEQLENLKLDAARLEELGAEGLGPPVSVS 343 (351)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHhhhhhhhhhhhcCcccccCCceec
Confidence 34678899999999999999999553221 12221 1 12334455556777888774
No 81
>PRK02866 cyanate hydratase; Validated
Probab=69.71 E-value=8.9 Score=26.53 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=36.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCCceEE
Q psy8577 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103 (124)
Q Consensus 24 ~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~ 103 (124)
|++|-. +-+|..|..|+.++++++++. -|.-|++++ .|.---.++ -|.+|||+ ++.+ +|+|.|
T Consensus 81 ptdP~i--YR~yE~v~vYG~~~K~~i~E~----FGDGIMSAI---df~~~v~k~-~dp~Gdrv----~it~---~GKfLp 143 (147)
T PRK02866 81 PTDPLI--YRFYEMVQVYGTTLKALIHEK----FGDGIMSAI---DFKLDVDKV-EDPKGDRV----VITL---DGKFLP 143 (147)
T ss_pred CCCcHH--HHHHHHHHHhhHHHHHHHHHH----hCCceeeee---eeceeeeec-cCCCCCEE----EEEe---cccccC
Confidence 344444 457999999999999998752 122244433 453211222 26778772 3344 446655
No 82
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=68.95 E-value=2.5 Score=25.65 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCc
Q psy8577 30 FVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDR 85 (124)
Q Consensus 30 ~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr 85 (124)
.-.-+|.+|..|+.|++.++++.. -+| | |-.+.|.---.++. |..|+|
T Consensus 11 ~iYR~yE~v~vYG~~~K~li~E~F--GDG--I---MSAIdF~~~v~k~~-d~~GdR 58 (73)
T PF02560_consen 11 LIYRLYEIVQVYGPAIKALIHEKF--GDG--I---MSAIDFKMDVEKVE-DPKGDR 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---SE--E---EEEEEEEEEEEEEE--TTSEE
T ss_pred eEeeeehhhHhhCHHHHHHHHHhh--Ccc--e---EEEeeEEEEEEEee-CCCCCE
Confidence 345579999999999999887521 122 2 22345543223343 677776
No 83
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=68.38 E-value=8 Score=28.71 Aligned_cols=31 Identities=32% Similarity=0.249 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHH
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYS 42 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a 42 (124)
.+|.+++++..+++ .+..+++..|||+++++
T Consensus 263 ~~f~~~~~~~~g~~--------~~~~~~~~~Yda~~~~~ 293 (312)
T cd06333 263 LDFVKAYEAKYGAG--------SVSTFGGHAYDALLLLA 293 (312)
T ss_pred HHHHHHHHHHhCCC--------CCCchhHHHHHHHHHHH
Confidence 45666665555432 25678999999999998
No 84
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=68.31 E-value=5.5 Score=23.93 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q psy8577 32 TAFYDAVILYSIALNETIAM 51 (124)
Q Consensus 32 ~~~yDAV~l~a~Al~~~~~~ 51 (124)
.-+|.+|..|+.|+++++++
T Consensus 9 YRlyE~v~vYG~~~K~li~E 28 (69)
T cd00559 9 YRFYEIVQVYGPTLKALIHE 28 (69)
T ss_pred eehHHHHHHhhHHHHHHHHH
Confidence 34799999999999999875
No 85
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=61.36 E-value=14 Score=25.68 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=36.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCCceEE
Q psy8577 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103 (124)
Q Consensus 24 ~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~ 103 (124)
|++|-. +-+|.+|..|+.++++++++. -|.-|+++ +.|.---.++. |..|||+ ++.+ +|+|.|
T Consensus 84 ptdP~i--YR~yE~v~vYG~~~K~~i~E~----FGDGIMSA---IdF~~~v~k~~-dp~Gdrv----~it~---~GKfLp 146 (150)
T TIGR00673 84 PTDPTM--YRFYEMLQVYGTTLKAVVHEK----FGDGIMSA---IDFKLDVEKVA-DPGGERA----VITL---NGKYLP 146 (150)
T ss_pred CCCchH--HHHHHHHHHhhHHHHHHHHHH----hCcceeee---eeeceeeeeec-CCCCCEE----EEEe---cccccC
Confidence 344444 457999999999999998752 12224443 34532112333 7778773 3334 446655
Q ss_pred E
Q psy8577 104 N 104 (124)
Q Consensus 104 v 104 (124)
-
T Consensus 147 y 147 (150)
T TIGR00673 147 Y 147 (150)
T ss_pred C
Confidence 3
No 86
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=44.57 E-value=70 Score=19.63 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=25.0
Q ss_pred EecCCCCc-ccCEEEEEecC---CCCce-EEEEEEeCCCC-ceeccC
Q psy8577 78 HIDANGDR-LADYSLLDMDP---DTSEF-RRNENEELKSG-VRGSID 118 (124)
Q Consensus 78 ~fd~~Gdr-~~~y~i~~~~~---~~~~~-~~vg~~~~~~g-~~~~~~ 118 (124)
.+--.|-+ .+.|.|...+. .+|++ ..||+||+... ..+.+|
T Consensus 4 RL~R~G~k~~PfYrIVv~d~r~~RdGk~iE~lG~YnP~~~~~~i~l~ 50 (78)
T TIGR00002 4 RLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPLTKESRVKLN 50 (78)
T ss_pred ecccCCCCCCCeEEEEEEecCCCCCCCceeEeeeccCCCCCcEEEEc
Confidence 34445553 47888888843 45655 66999998532 234444
No 87
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=36.21 E-value=69 Score=23.08 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=23.3
Q ss_pred EEecCCCCc-ccCEEEEEec---CCCCce-EEEEEEeCCC
Q psy8577 77 VHIDANGDR-LADYSLLDMD---PDTSEF-RRNENEELKS 111 (124)
Q Consensus 77 v~fd~~Gdr-~~~y~i~~~~---~~~~~~-~~vg~~~~~~ 111 (124)
|++-..|-+ .+.|.|...+ +.+|+| ..||+||+.+
T Consensus 5 IRL~R~G~KkrPfYrIVVaDsR~~RDGk~IE~lG~YnP~~ 44 (186)
T PRK14521 5 IRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNT 44 (186)
T ss_pred ehhhhCCCCCCCeEEEEEEeCCCCCCCCceeeeeecCCCC
Confidence 444455653 4788888884 345666 5699999843
No 88
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=35.07 E-value=94 Score=18.04 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=18.6
Q ss_pred ccCEEEEEecC---CCCce-EEEEEEeCCCC
Q psy8577 86 LADYSLLDMDP---DTSEF-RRNENEELKSG 112 (124)
Q Consensus 86 ~~~y~i~~~~~---~~~~~-~~vg~~~~~~g 112 (124)
.+.|.|...+. .+|++ ..||+||+...
T Consensus 7 ~P~YrIVv~d~r~~RdGk~iE~lG~YdP~~~ 37 (62)
T PF00886_consen 7 RPFYRIVVADSRSPRDGKFIEELGFYDPIPN 37 (62)
T ss_dssp EEEEEEEEEETTSSTTSSESEEEEEEETTSS
T ss_pred CCeEEEEEEeCCcccccchhhccceEcCCCC
Confidence 36788888843 34544 67999998543
No 89
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=35.04 E-value=70 Score=21.20 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy8577 24 NESVSTFVTAFYDAVILYSIALNETIA 50 (124)
Q Consensus 24 ~~~~~~~~~~~yDAV~l~a~Al~~~~~ 50 (124)
...|-.-.+.++||.+.++-|+-=++-
T Consensus 18 ~ddPmtGvANLfDaamVfsva~LI~lv 44 (121)
T COG4744 18 DDDPMTGVANLFDAAMVFSVALLIALV 44 (121)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 445666678999999999999877654
No 90
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=33.14 E-value=1e+02 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=24.9
Q ss_pred ecCCCCc-ccCEEEEEecC---CCCce-EEEEEEeCCCCceeccC
Q psy8577 79 IDANGDR-LADYSLLDMDP---DTSEF-RRNENEELKSGVRGSID 118 (124)
Q Consensus 79 fd~~Gdr-~~~y~i~~~~~---~~~~~-~~vg~~~~~~g~~~~~~ 118 (124)
+--.|-+ .|.|.|...+. .+|++ ..||+||+.....+.||
T Consensus 7 LaR~G~KkrPfYrIVVaDsR~~RDGk~IE~lG~YdP~~~~~v~Ln 51 (116)
T PRK14522 7 LRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDPHSEQNYQLK 51 (116)
T ss_pred cccCCCCCCCeEEEEEeecCCCCCCCcceeeeccCCCCCCceEEC
Confidence 3344543 46888888843 45655 66999998654444444
No 91
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=31.95 E-value=53 Score=20.69 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=25.2
Q ss_pred EecCCCCc-ccCEEEEEec---CCCCce-EEEEEEeCCC--CceeccC
Q psy8577 78 HIDANGDR-LADYSLLDMD---PDTSEF-RRNENEELKS--GVRGSID 118 (124)
Q Consensus 78 ~fd~~Gdr-~~~y~i~~~~---~~~~~~-~~vg~~~~~~--g~~~~~~ 118 (124)
.+-.-|.. .|.|.|...+ +.+|+| ..||+|++.. ...+.+|
T Consensus 5 RL~R~G~kk~P~YrIVVaDsrs~RDGr~IE~lG~ynP~~~~~~~v~l~ 52 (87)
T COG0228 5 RLARGGSKKRPFYRIVVADSRSPRDGRFIERLGTYNPLLGKEERVKLD 52 (87)
T ss_pred ehhhCCCccCCeEEEEEeccCCCCCCcchhhhcccCCCCCccceEEEc
Confidence 33344553 4788888884 456666 5599999833 3344444
No 92
>PF03512 Glyco_hydro_52: Glycosyl hydrolase family 52; InterPro: IPR000852 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 52 GH52 from CAZY comprises enzymes with only one known activity; beta-xylosidase (3.2.1.37 from EC). Proteins harboring beta-xylosidase and xylanase activities []have been identified in the Gram-positive, facultative thermophilic aerobe Bacillus stearothermophilus 21 []. This microbe, which functions in xylan degradation, can utilise xylan as a sole source of carbon. The enzyme hydrolyses 1,4-beta-D-xylans, removing successive D-xylose residues from the non-reducing termini. It also hydrolyses xylobiose.; GO: 0009044 xylan 1,4-beta-xylosidase activity, 0005975 carbohydrate metabolic process
Probab=31.80 E-value=2.4e+02 Score=22.97 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChh-HHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCCceEEEE
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGS-AITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNE 105 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~-~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~vg 105 (124)
+-.|+.-=.|+..+.|.+.++.+.+..-..+-. .|.++++ +|.|.|..+ ++.|.+ ++.+ +.|.|+.+-
T Consensus 262 V~~yaL~~~~~~~a~a~~~d~~l~~s~LsedqkFmlAhA~h--SYYgSTqLL--~~~G~P-----lWVV--NEGEYrMmN 330 (428)
T PF03512_consen 262 VLEYALENFDRYLALAAERDEELESSGLSEDQKFMLAHATH--SYYGSTQLL--DDDGKP-----LWVV--NEGEYRMMN 330 (428)
T ss_pred HHHHHHHhHHHHHHHHHHHhHHHhhcCCChhHHHHHHHHHH--hhhcchhhh--hcCCce-----EEEE--ecceeEEee
Confidence 444666667777788888887765422112222 3445555 899988654 566643 3444 456666665
Q ss_pred EEe
Q psy8577 106 NEE 108 (124)
Q Consensus 106 ~~~ 108 (124)
++|
T Consensus 331 TfD 333 (428)
T PF03512_consen 331 TFD 333 (428)
T ss_pred hhh
Confidence 555
No 93
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=26.50 E-value=80 Score=22.55 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=22.6
Q ss_pred CCChhHHHHHhhcCeeeeccceEEecCCCCc
Q psy8577 55 QSDGSAITRRMWNRTYQGIAGDVHIDANGDR 85 (124)
Q Consensus 55 ~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr 85 (124)
+..|++|++.+++..+.-+ -|.||+.|.+
T Consensus 37 ~lsG~elV~lIk~a~~DPV--~VMfDD~G~~ 65 (180)
T PF14097_consen 37 PLSGEELVELIKQAPHDPV--LVMFDDKGFI 65 (180)
T ss_pred cCCHHHHHHHHHhCCCCCE--EEEEeCCCCC
Confidence 4689999999888777655 3888988875
No 94
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=25.05 E-value=1e+02 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=24.4
Q ss_pred ChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEe
Q psy8577 57 DGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94 (124)
Q Consensus 57 ~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~ 94 (124)
+-..|+.+|..++ .|++|.|. |+.|+.++..+|..-
T Consensus 274 n~~all~~~~~~~-~gI~G~V~-d~~g~pi~~A~V~v~ 309 (363)
T cd06245 274 NKKSLLSMIVEAH-KGVHGVVT-DKAGKPISGATIVLN 309 (363)
T ss_pred HHHHHHHHHHHcC-cEEEEEEE-cCCCCCccceEEEEe
Confidence 3345677776655 78999987 677887666555544
No 95
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=24.30 E-value=76 Score=26.39 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=13.0
Q ss_pred hcCeeeeccceEEecCCCC
Q psy8577 66 WNRTYQGIAGDVHIDANGD 84 (124)
Q Consensus 66 ~~~~f~G~tG~v~fd~~Gd 84 (124)
....+.|.||.+++|++|.
T Consensus 505 ~~~~~~G~TG~L~~~~~g~ 523 (536)
T PF04348_consen 505 PGYRLDGLTGQLSLDEDGR 523 (536)
T ss_dssp TT--EEETTEEEEE-TT-B
T ss_pred CCCcccCCceeEEECCCCe
Confidence 3457899999999999885
No 96
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=24.26 E-value=1.5e+02 Score=20.77 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=22.5
Q ss_pred EEecCCCCc-ccCEEEEEecC---CCCce-EEEEEEeCCC
Q psy8577 77 VHIDANGDR-LADYSLLDMDP---DTSEF-RRNENEELKS 111 (124)
Q Consensus 77 v~fd~~Gdr-~~~y~i~~~~~---~~~~~-~~vg~~~~~~ 111 (124)
|++-..|-+ .+.|.|...+. .+|+| ..||+||+..
T Consensus 5 IRL~R~G~kk~PfYrIVVaDsR~~RDGk~IE~lG~YnP~~ 44 (155)
T PRK14520 5 IKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKE 44 (155)
T ss_pred ehhhhCCCCCCCeEEEEEeecCCCCCCCceeeeeccCCCC
Confidence 334445553 47888888843 45555 5699999843
No 97
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=22.67 E-value=1.6e+02 Score=17.83 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=21.1
Q ss_pred ecCCCCc-ccCEEEEEecC---CCCce-EEEEEEeCC
Q psy8577 79 IDANGDR-LADYSLLDMDP---DTSEF-RRNENEELK 110 (124)
Q Consensus 79 fd~~Gdr-~~~y~i~~~~~---~~~~~-~~vg~~~~~ 110 (124)
+--.|-+ .+.|.|...+. .+|++ ..||+||+.
T Consensus 6 L~R~G~k~~P~YrIVv~d~r~~RdGk~iE~lG~ydP~ 42 (75)
T PRK00040 6 LARGGAKKRPFYRIVVADSRSPRDGRFIERVGFYNPL 42 (75)
T ss_pred hhhCCCCCCCeEEEEEEecCCCCCCCceeEEeecCCC
Confidence 3344543 47888888843 45655 569999984
No 98
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=22.58 E-value=1.6e+02 Score=17.83 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHH
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALN 46 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~ 46 (124)
++|..+|+.... -...-.++||+...|-++++
T Consensus 6 refr~kV~~~ie-----------~EaEkd~lY~~Lr~YHqSm~ 37 (79)
T cd07353 6 REFRHKVELLID-----------NEAEKDYLYDVLRMYHQSMN 37 (79)
T ss_pred HHHHHHHHHhhc-----------cHHHHHHHHHHHHHHHhccC
Confidence 357777764442 23455788999888877654
No 99
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=20.54 E-value=2.3e+02 Score=17.76 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=22.0
Q ss_pred EEecCCCCc-ccCEEEEEecC---CCCce-EEEEEEeCC
Q psy8577 77 VHIDANGDR-LADYSLLDMDP---DTSEF-RRNENEELK 110 (124)
Q Consensus 77 v~fd~~Gdr-~~~y~i~~~~~---~~~~~-~~vg~~~~~ 110 (124)
|.+--.|.+ .+.|.|...+. .+|++ ..||+||+.
T Consensus 5 IRL~R~G~k~~P~YrIVv~dsr~~RdGk~IE~lG~YnP~ 43 (88)
T PRK14525 5 LRLSRAGTHKAPFYHVVATDSRNARDGKYLEDVGIYDPT 43 (88)
T ss_pred EehhhCCCCCCCeEEEEEeecCCCCCCCceeEEecccCC
Confidence 334445553 46888888843 45655 569999984
No 100
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=20.33 E-value=2.2e+02 Score=19.49 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=21.6
Q ss_pred EecCCCCc-ccCEEEEEecC---CCCce-EEEEEEeCC
Q psy8577 78 HIDANGDR-LADYSLLDMDP---DTSEF-RRNENEELK 110 (124)
Q Consensus 78 ~fd~~Gdr-~~~y~i~~~~~---~~~~~-~~vg~~~~~ 110 (124)
++--.|.+ .+.|.|...+. .+|+| ..||+||+.
T Consensus 5 RL~R~GrKkrPfYRIVVaDsRs~RDGK~IE~LG~YdP~ 42 (137)
T PRK14523 5 RLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPM 42 (137)
T ss_pred hhhcCCCCCCCeEEEEEEecCCCCCCCceeeeeecCCC
Confidence 33344553 47888888843 45655 569999984
No 101
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=20.32 E-value=1.3e+02 Score=24.16 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=24.4
Q ss_pred ChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEe
Q psy8577 57 DGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94 (124)
Q Consensus 57 ~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~ 94 (124)
+-..|+.+|..+. .|+.|.|. |++|..++..+|..-
T Consensus 303 n~~all~~~~~~~-~gI~G~V~-D~~g~pi~~A~V~v~ 338 (392)
T cd03864 303 NREALISYIEQVH-QGIKGMVT-DENNNGIANAVISVS 338 (392)
T ss_pred HHHHHHHHHHHhc-CeEEEEEE-CCCCCccCCeEEEEE
Confidence 3446777777655 48889887 677877666555543
Done!