Query psy8577
Match_columns 124
No_of_seqs 120 out of 1016
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 22:23:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpa_A Glutamate receptor 4; P 99.8 7.3E-20 2.5E-24 138.4 12.5 95 24-120 270-382 (389)
2 1dp4_A Atrial natriuretic pept 99.8 4.1E-18 1.4E-22 131.3 13.1 114 3-117 290-403 (435)
3 3o21_A Glutamate receptor 3; p 99.7 5.8E-17 2E-21 124.5 11.1 109 3-114 252-378 (389)
4 1jdp_A NPR-C, atrial natriuret 99.7 2.1E-16 7.2E-21 122.4 13.9 106 3-111 289-396 (441)
5 3hsy_A Glutamate receptor 2; l 99.7 5.4E-17 1.9E-21 123.8 9.7 110 3-115 246-373 (376)
6 3saj_A Glutamate receptor 1; r 99.7 2E-16 6.7E-21 120.9 12.2 115 3-120 249-381 (384)
7 3om0_A Glutamate receptor, ion 99.6 3.3E-15 1.1E-19 114.1 13.0 109 3-115 258-380 (393)
8 3h6g_A Glutamate receptor, ion 99.6 3.3E-15 1.1E-19 114.0 10.8 113 3-117 258-384 (395)
9 4f11_A Gamma-aminobutyric acid 99.6 2.2E-15 7.4E-20 116.3 9.3 104 3-119 294-412 (433)
10 3kg2_A Glutamate receptor 2; I 99.6 8.9E-15 3E-19 120.7 11.5 111 3-116 246-374 (823)
11 3qek_A NMDA glutamate receptor 99.5 2.8E-13 9.6E-18 103.1 10.4 87 28-119 275-376 (384)
12 2e4u_A Metabotropic glutamate 99.4 1.3E-12 4.6E-17 104.4 12.4 83 27-109 362-464 (555)
13 3td9_A Branched chain amino ac 99.4 2.6E-12 8.8E-17 96.6 11.4 91 3-109 271-362 (366)
14 4evq_A Putative ABC transporte 99.4 4.2E-12 1.4E-16 95.5 12.0 92 3-108 271-362 (375)
15 3mq4_A Mglur7, metabotropic gl 99.4 2.2E-12 7.5E-17 101.7 10.0 87 29-119 374-474 (481)
16 3ks9_A Mglur1, metabotropic gl 99.3 6E-12 2E-16 99.7 10.4 86 32-120 384-483 (496)
17 3hut_A Putative branched-chain 99.3 1.9E-11 6.4E-16 91.6 10.4 91 3-109 260-353 (358)
18 3sm9_A Mglur3, metabotropic gl 99.3 8E-12 2.7E-16 98.6 7.3 87 30-120 364-470 (479)
19 3ipc_A ABC transporter, substr 99.3 2E-11 6.9E-16 91.3 8.6 93 3-110 258-352 (356)
20 3qel_B Glutamate [NMDA] recept 99.2 1.6E-11 5.3E-16 93.9 7.6 77 29-108 258-350 (364)
21 1usg_A Leucine-specific bindin 99.2 4.5E-11 1.5E-15 88.8 9.9 85 4-104 259-345 (346)
22 4gnr_A ABC transporter substra 99.2 8.2E-11 2.8E-15 88.1 9.4 86 4-107 265-351 (353)
23 4eyg_A Twin-arginine transloca 99.2 2.7E-10 9.3E-15 85.4 11.1 92 3-108 263-358 (368)
24 3i45_A Twin-arginine transloca 99.1 6E-10 2E-14 84.5 10.9 96 3-113 267-363 (387)
25 3i09_A Periplasmic branched-ch 99.1 2.4E-09 8.2E-14 80.7 12.1 92 3-108 261-358 (375)
26 3snr_A Extracellular ligand-bi 99.1 5.8E-10 2E-14 83.0 8.4 92 3-104 264-361 (362)
27 3n0x_A Possible substrate bind 99.0 5.5E-09 1.9E-13 79.0 12.1 91 4-108 267-359 (374)
28 3sg0_A Extracellular ligand-bi 99.0 1.9E-09 6.5E-14 81.0 8.3 91 4-104 289-385 (386)
29 1pea_A Amidase operon; gene re 99.0 6.9E-09 2.4E-13 78.6 11.2 92 4-108 266-358 (385)
30 3h5l_A Putative branched-chain 99.0 1.5E-09 5E-14 83.2 7.6 92 3-104 285-393 (419)
31 3lkb_A Probable branched-chain 98.9 2.1E-09 7.3E-14 81.4 7.6 98 4-110 265-375 (392)
32 3n0w_A ABC branched chain amin 98.9 1.2E-08 4.1E-13 77.0 11.2 79 3-95 264-343 (379)
33 4f06_A Extracellular ligand-bi 98.9 8.6E-09 2.9E-13 78.0 9.9 94 4-108 265-361 (371)
34 3eaf_A ABC transporter, substr 98.8 8.2E-09 2.8E-13 78.4 7.0 100 5-111 270-373 (391)
35 3lop_A Substrate binding perip 98.7 2.2E-07 7.5E-12 69.6 11.3 80 4-94 266-348 (364)
36 3ckm_A YRAM (HI1655), LPOA; pe 98.3 7.2E-07 2.5E-11 66.5 5.2 62 28-106 260-321 (327)
37 2h4a_A YRAM (HI1655); perplasm 97.7 4.6E-05 1.6E-09 57.4 5.6 61 27-104 257-317 (325)
38 1dw9_A Cyanate lyase; cyanate 38.8 26 0.00087 23.5 3.0 52 24-85 89-141 (156)
39 3kcp_B Cellulosome anchoring p 31.4 26 0.00088 24.1 2.0 23 72-94 155-177 (187)
40 3r8n_P 30S ribosomal protein S 27.2 1E+02 0.0035 18.2 5.1 34 78-111 5-43 (82)
41 3bn0_A 30S ribosomal protein S 21.3 1.1E+02 0.0038 19.3 3.5 33 86-118 15-51 (112)
42 2bm3_A Type 2 cohesin, scaffol 21.1 52 0.0018 22.2 2.0 22 72-93 143-164 (166)
No 1
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.83 E-value=7.3e-20 Score=138.36 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=80.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChhHHHHHhhcCeeeeccceEEecCCCCcc
Q psy8577 24 NESVSTFVTAFYDAVILYSIALNETIAMGG-----------------SQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL 86 (124)
Q Consensus 24 ~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~-----------------~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~ 86 (124)
...++.+++++|||||++|+||++++.++. .|.+|..|.++|++++|+|+||+|.||++|+|.
T Consensus 270 ~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~ 349 (389)
T 4gpa_A 270 ETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRV 349 (389)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCC
Confidence 346788999999999999999999976421 245788999999999999999999999999985
Q ss_pred -cCEEEEEecCCCCceEEEEEEeCCCCceeccCCc
Q psy8577 87 -ADYSLLDMDPDTSEFRRNENEELKSGVRGSIDED 120 (124)
Q Consensus 87 -~~y~i~~~~~~~~~~~~vg~~~~~~g~~~~~~~~ 120 (124)
..|+|+++ +.++++.||.|++.+|+.+..|++
T Consensus 350 ~~~~~I~~l--~~~~~~~VG~W~~~~gl~~~~~~t 382 (389)
T 4gpa_A 350 NYTMDVFEL--KSTGPRKVGYWNDMDKLVLIQDRT 382 (389)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEETTTEEEECCC--
T ss_pred CCEEEEEEE--ECCEEEEEEEEECCCCeEECCCCc
Confidence 47899988 566899999999999988776653
No 2
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.77 E-value=4.1e-18 Score=131.33 Aligned_cols=114 Identities=39% Similarity=0.620 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
+.+|.+++.++.+.+++|+..+..++.+++++|||||++|+||++++..+..+.++..|.++|++++|.|++|.+.||++
T Consensus 290 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~ 369 (435)
T 1dp4_A 290 YLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRN 369 (435)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCC
Confidence 45688888776666788887666678899999999999999999997755445789999999999999999999999999
Q ss_pred CCcccCEEEEEecCCCCceEEEEEEeCCCCceecc
Q psy8577 83 GDRLADYSLLDMDPDTSEFRRNENEELKSGVRGSI 117 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g~~~~~ 117 (124)
|++.+.|.|++++..++++++||.|+...+ .+.+
T Consensus 370 g~~~~~~~i~~~~~~~g~~~~vg~~~~~~~-~l~~ 403 (435)
T 1dp4_A 370 GDRDTDFSLWDMDPETGAFRVVLNYNGTSQ-ELMA 403 (435)
T ss_dssp SBBCCCEEEEEECTTTCCEEEEEEECTTTC-CEEE
T ss_pred CCccceeEEEEecCCCCcEEEEEEecCCCc-eEEE
Confidence 999889999999545678999999997554 3443
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.71 E-value=5.8e-17 Score=124.49 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChhHHHHHh
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMG-----------------GSQSDGSAITRRM 65 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~-----------------~~~~~g~~l~~~~ 65 (124)
+.+|.++++++.+.++.. .++..++.|++++||||+++|+||+++...+ ..|.+|..|+++|
T Consensus 252 ~~~F~~~~~~~~~~~~~~-~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l 330 (389)
T 3o21_A 252 VQQFIQRWVRLDEREFPE-AKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERAL 330 (389)
T ss_dssp HHHHHHHHTTSCTTTSTT-SSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHhccccccCC-CCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHH
Confidence 456777765544332211 1223567899999999999999999987421 2356789999999
Q ss_pred hcCeeeeccceEEecCCCCcc-cCEEEEEecCCCCceEEEEEEeCCCCce
Q psy8577 66 WNRTYQGIAGDVHIDANGDRL-ADYSLLDMDPDTSEFRRNENEELKSGVR 114 (124)
Q Consensus 66 ~~~~f~G~tG~v~fd~~Gdr~-~~y~i~~~~~~~~~~~~vg~~~~~~g~~ 114 (124)
++++|+|+||.++||++|+|. ..|.|+++ ..+.++.||.|++.+|+.
T Consensus 331 ~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~--~~~g~~~VG~w~~~~g~~ 378 (389)
T 3o21_A 331 KMVQVQGMTGNIQFDTYGRRTNYTIDVYEM--KVSGSRKAGYWNEYERFV 378 (389)
T ss_dssp HTCCEEETTEEECBCTTSBBCSCCEEEEEE--ETTEEEEEEEEETTTEEE
T ss_pred HhCcccccceeeeeCCCCCcccceEEEEEE--cCCCceeeeEEcCCCCcc
Confidence 999999999999999999985 58999999 556799999999877753
No 4
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.71 E-value=2.1e-16 Score=122.37 Aligned_cols=106 Identities=39% Similarity=0.656 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcC-CCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC
Q psy8577 3 FDFTAVKVKKVAKE-GYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA 81 (124)
Q Consensus 3 ~~~f~~~v~~~~~~-~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~ 81 (124)
+.+|.+++++.++. +|+ . ...++.+++.+|||||++|+||++++..+..+.++.+|.++|++++|.|++|.+.||+
T Consensus 289 ~~~F~~~~~~~~~~~~~~--~-~~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~ 365 (441)
T 1jdp_A 289 FEKFSMEVKSSVEKQGLN--M-EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDA 365 (441)
T ss_dssp HHHHHHHHHHHHHTTTCC--C-CSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECT
T ss_pred HHHHHHHHHHHHhhCCCC--c-cchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECC
Confidence 56788888665432 233 1 1235668999999999999999999765544578999999999999999999999999
Q ss_pred CCCcccCEEEEEec-CCCCceEEEEEEeCCC
Q psy8577 82 NGDRLADYSLLDMD-PDTSEFRRNENEELKS 111 (124)
Q Consensus 82 ~Gdr~~~y~i~~~~-~~~~~~~~vg~~~~~~ 111 (124)
+||+.+.|.|+++. ..++.+++||.|++..
T Consensus 366 ~Gd~~~~~~I~~~~~~~~g~~~~VG~~~~~~ 396 (441)
T 1jdp_A 366 NGDRYGDFSVIAMTDVEAGTQEVIGDYFGKE 396 (441)
T ss_dssp TSBBCCEEEEEEEEETTTTEEEEEEEEETTT
T ss_pred CCCccccEEEEecccCCCCceEEEEEEcCCC
Confidence 99998899999984 3456899999999743
No 5
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.70 E-value=5.4e-17 Score=123.78 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChhHHHHHh
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMG-----------------GSQSDGSAITRRM 65 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~-----------------~~~~~g~~l~~~~ 65 (124)
+.+|.+++++..+..++ ..+...++.|++++||||+++|+||+++..++ ..|.+|..|.++|
T Consensus 246 ~~~F~~~~~~~~~~~~~-~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l 324 (376)
T 3hsy_A 246 VSKFIERWSTLEEKEYP-GAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERAL 324 (376)
T ss_dssp HHHHHHHHTTSCTTTST-TCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccC-CCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHH
Confidence 34566666544433221 11223578899999999999999999986421 1245678999999
Q ss_pred hcCeeeeccceEEecCCCCcc-cCEEEEEecCCCCceEEEEEEeCCCCcee
Q psy8577 66 WNRTYQGIAGDVHIDANGDRL-ADYSLLDMDPDTSEFRRNENEELKSGVRG 115 (124)
Q Consensus 66 ~~~~f~G~tG~v~fd~~Gdr~-~~y~i~~~~~~~~~~~~vg~~~~~~g~~~ 115 (124)
++++|+|+||.|+||++|+|. ..|.|+++ ..+.++.||.|++.+|+..
T Consensus 325 ~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~--~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 325 KQVQVEGLSGNIKFDQNGKRINYTINIMEL--KTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp HHCCEEETTEEECBCTTSBBCSCEEEEEEE--ETTEEEEEEEEETTTEEEE
T ss_pred HhcCcCCCccceeECCCCCCccceEEEEEe--cCCCceEEEEEcCCCCcee
Confidence 999999999999999999974 57888888 5668999999999888654
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.70 E-value=2e-16 Score=120.86 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChhHHHHHh
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMG-----------------GSQSDGSAITRRM 65 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~-----------------~~~~~g~~l~~~~ 65 (124)
+.+|.+++++..+..+++. .+..++.+++++||||+++++||+++...+ ..|.+|..|+++|
T Consensus 249 ~~~F~~~~~~~~~~~~p~~-~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l 327 (384)
T 3saj_A 249 PARIMQQWRTSDSRDHTRV-DWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRAL 327 (384)
T ss_dssp HHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCC-CCCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHH
Confidence 4668888876665433211 123457799999999999999999987521 1247899999999
Q ss_pred hcCeeeeccceEEecCCCCcc-cCEEEEEecCCCCceEEEEEEeCCCCceeccCCc
Q psy8577 66 WNRTYQGIAGDVHIDANGDRL-ADYSLLDMDPDTSEFRRNENEELKSGVRGSIDED 120 (124)
Q Consensus 66 ~~~~f~G~tG~v~fd~~Gdr~-~~y~i~~~~~~~~~~~~vg~~~~~~g~~~~~~~~ 120 (124)
++++|+|++|+++||++|+|. ..|.|+++ ..+.+..||.|++.+|+...-+++
T Consensus 328 ~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~--~~~g~~~VG~W~~~~gl~~~~~~~ 381 (384)
T 3saj_A 328 QQVRFEGLTGNVQFNEKGRRTNYTLHVIEM--KHDGIRKIGYWNEDDKFVPAALEV 381 (384)
T ss_dssp HSCCEEETTEEECBCTTSBBCSCCEEEEEE--ETTEEEEEEEEETTTEEEECCC--
T ss_pred HhCcCcccceeeEeCCCCCcccceEEEEEe--ccCCcceeEEEcCCCCccccCccc
Confidence 999999999999999999974 68999999 556789999999988876654443
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.64 E-value=3.3e-15 Score=114.09 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCCCCcccCC-CchhhHHHHHHHHHHHHHHHHHHHHHcC------------CCCCChhHHHHHhhcCe
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGN-ESVSTFVTAFYDAVILYSIALNETIAMG------------GSQSDGSAITRRMWNRT 69 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~-~~~~~~~~~~yDAV~l~a~Al~~~~~~~------------~~~~~g~~l~~~~~~~~ 69 (124)
+.+|.+++++..+.. |...+ ..++.+++++||||+++++||+++...+ ..|.+|..|.++|++++
T Consensus 258 ~~~f~~~~~~~~~~~--~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~ 335 (393)
T 3om0_A 258 YPEFVRSLNMSWREN--CEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVE 335 (393)
T ss_dssp HHHHHHHHHHHHTTT--SCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhh--ccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCC
Confidence 456888887666532 33221 3467899999999999999999984211 12578999999999999
Q ss_pred eeeccceEEecCCCCc-ccCEEEEEecCCCCceEEEEEEeCCCCcee
Q psy8577 70 YQGIAGDVHIDANGDR-LADYSLLDMDPDTSEFRRNENEELKSGVRG 115 (124)
Q Consensus 70 f~G~tG~v~fd~~Gdr-~~~y~i~~~~~~~~~~~~vg~~~~~~g~~~ 115 (124)
|+|++|.++||++|++ ...|.|+++ ..+.++.||.|++.+|+..
T Consensus 336 f~G~tG~i~fd~~G~~~~~~~~i~~~--~~~g~~~VG~w~~~~gl~~ 380 (393)
T 3om0_A 336 YDGLTGRVEFNSKGQRTNYTLRILEK--SRQGHREIGVWYSNRTLAM 380 (393)
T ss_dssp EEETTEEECBCTTSCBCSCEEEEEEE--ETTEEEEEEEEECC-----
T ss_pred CCCccceEEeCCCCcccceeEEEEEe--ccCCceEeeeEcCCCCccc
Confidence 9999999999999998 478999999 4567999999999887543
No 8
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.61 E-value=3.3e-15 Score=114.03 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHh--cCCCCcccC-CCchhhHHHHHHHHHHHHHHHHHHHHHc---------CCCCCChhHHHHHhhcCee
Q psy8577 3 FDFTAVKVKKVA--KEGYNFTFG-NESVSTFVTAFYDAVILYSIALNETIAM---------GGSQSDGSAITRRMWNRTY 70 (124)
Q Consensus 3 ~~~f~~~v~~~~--~~~~~~~~~-~~~~~~~~~~~yDAV~l~a~Al~~~~~~---------~~~~~~g~~l~~~~~~~~f 70 (124)
+.+|.+++++.. .+|+.|... ...++.+++++||||+++++|++++... ...|.+|..|.++|++++|
T Consensus 258 ~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~ 337 (395)
T 3h6g_A 258 VSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHW 337 (395)
T ss_dssp HHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEE
T ss_pred HHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCC
Confidence 467888886533 356655543 2357889999999999999999987321 1135789999999999999
Q ss_pred eeccceEEecC-CCCccc-CEEEEEecCCCCceEEEEEEeCCCCceecc
Q psy8577 71 QGIAGDVHIDA-NGDRLA-DYSLLDMDPDTSEFRRNENEELKSGVRGSI 117 (124)
Q Consensus 71 ~G~tG~v~fd~-~Gdr~~-~y~i~~~~~~~~~~~~vg~~~~~~g~~~~~ 117 (124)
+|++|.++||+ +|+|.. .|.|+++ ++++++.||.|++.+|+...-
T Consensus 338 ~G~tG~i~fd~~~G~~~~~~~~i~~~--~~~~~~~vG~w~~~~g~~~~~ 384 (395)
T 3h6g_A 338 EGLTGRITFNKTNGLRTDFDLDVISL--KEEGLEKIGTWDPASGLNMTE 384 (395)
T ss_dssp EETTEEEECCTTTSEECCCCEEEEEE--ETTEEEEEEEEETTTEECCCC
T ss_pred cCcceeeEecCCCCeecCCeEEEEEe--ccCCceEEEEEcCCCCccccC
Confidence 99999999998 999854 7999999 567899999999988865543
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.61 E-value=2.2e-15 Score=116.28 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=82.4
Q ss_pred hHHHHHHHHHH-hcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHc---CC-----------CCCChhHHHHHhhc
Q psy8577 3 FDFTAVKVKKV-AKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM---GG-----------SQSDGSAITRRMWN 67 (124)
Q Consensus 3 ~~~f~~~v~~~-~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~---~~-----------~~~~g~~l~~~~~~ 67 (124)
..+|.+++++. .+ ..++.+++++|||||++|+||+++... +. .+.++..|.++|++
T Consensus 294 ~~~f~~~y~~~~~~---------~~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 364 (433)
T 4f11_A 294 PQQYEREYNNKRSG---------VGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNE 364 (433)
T ss_dssp HHHHHHHHHHHHTT---------SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC---------CCcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHh
Confidence 56677777654 22 245778899999999999999998642 11 11247899999999
Q ss_pred CeeeeccceEEecCCCCcccCEEEEEecCCCCceEEEEEEeCCCCceeccCC
Q psy8577 68 RTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNENEELKSGVRGSIDE 119 (124)
Q Consensus 68 ~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g~~~~~~~ 119 (124)
++|.|++|.|+| ++|+|...|.|+++ +++++++||.|+...+ .+.|++
T Consensus 365 ~~f~G~tG~v~f-~~Gd~~~~~~I~~~--~~g~~~~VG~~~~~~~-~l~~~~ 412 (433)
T 4f11_A 365 TNFFGVTGQVVF-RNGERMGTIKFTQF--QDSREVKVGEYNAVAD-TLEIIN 412 (433)
T ss_dssp CEEEETTEEEEE-ETTEEECEEEEEEE--ETTEEEEEEEEETTTT-EEEECT
T ss_pred cEEEccceEEEE-ecCceeeeEEEEEE--ECCceEEEEEEECCCC-eEEEeC
Confidence 999999999999 89999999999999 5589999999987433 566654
No 10
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.59 E-value=8.9e-15 Score=120.73 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChhHHHHHh
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMG-----------------GSQSDGSAITRRM 65 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~-----------------~~~~~g~~l~~~~ 65 (124)
+.+|.+++++..+.++. ......++.+++++|||||++|+||+++...+ ..|.+|..|.++|
T Consensus 246 ~~~f~~~~~~~~~~~~~-~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l 324 (823)
T 3kg2_A 246 VSKFIERWSTLEEKEYP-GAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERAL 324 (823)
T ss_dssp HHHHHHHHTTSCTTTST-TCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccC-CCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHH
Confidence 45566666544433211 11223467899999999999999999987532 2346788999999
Q ss_pred hcCeeeeccceEEecCCCCcc-cCEEEEEecCCCCceEEEEEEeCCCCceec
Q psy8577 66 WNRTYQGIAGDVHIDANGDRL-ADYSLLDMDPDTSEFRRNENEELKSGVRGS 116 (124)
Q Consensus 66 ~~~~f~G~tG~v~fd~~Gdr~-~~y~i~~~~~~~~~~~~vg~~~~~~g~~~~ 116 (124)
++++|+|++|.++||++|++. +.|.|+++ .+++++.||.|++.+|+...
T Consensus 325 ~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~--~~~g~~~vg~w~~~~g~~~~ 374 (823)
T 3kg2_A 325 KQVQVEGLSGNIKFDQNGKRINYTINIMEL--KTNGPRKIGYWSEVDKMVLT 374 (823)
T ss_dssp TTCCCEETTEECCBCSSSCBCSCEEEEEEE--CSSCEEEEEEEETTTEEEEC
T ss_pred HhcccCCcccCeEECCCCcccccEEEEEEE--cCCCCeeEEEEcCCCCceec
Confidence 999999999999999999985 57889988 66779999999987765543
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.47 E-value=2.8e-13 Score=103.07 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC-------------CCCCChhHHHHHhhcCee-eeccceEEecCCCCc-ccCEEEE
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMG-------------GSQSDGSAITRRMWNRTY-QGIAGDVHIDANGDR-LADYSLL 92 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~-------------~~~~~g~~l~~~~~~~~f-~G~tG~v~fd~~Gdr-~~~y~i~ 92 (124)
...++.+|||||++|+||++++.+. ..|..|..|.+++++++| .|++|++.||++|+| ...|+|+
T Consensus 275 ~~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~ 354 (384)
T 3qek_A 275 KNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIM 354 (384)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEE
Confidence 3457899999999999999987421 134578889999999998 999999999999998 7899999
Q ss_pred EecCCCCceEEEEEEeCCCCceeccCC
Q psy8577 93 DMDPDTSEFRRNENEELKSGVRGSIDE 119 (124)
Q Consensus 93 ~~~~~~~~~~~vg~~~~~~g~~~~~~~ 119 (124)
++ ..+.++.||.|+. ..++|++
T Consensus 355 ~~--~~~~~~~VG~w~~---~~l~i~~ 376 (384)
T 3qek_A 355 NL--QNRKLVQVGIFNG---SYIIQND 376 (384)
T ss_dssp EE--ETTEEEEEEEECS---SSEEECS
T ss_pred EE--cCCceEEEEEEeC---CeEeecc
Confidence 99 4568999999973 3455655
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.43 E-value=1.3e-12 Score=104.39 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc--C--------CCCCChhHHHH-HhhcCeee------eccce-EEecCCCCcccC
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAM--G--------GSQSDGSAITR-RMWNRTYQ------GIAGD-VHIDANGDRLAD 88 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~--~--------~~~~~g~~l~~-~~~~~~f~------G~tG~-v~fd~~Gdr~~~ 88 (124)
+..+++.+|||||++|+||+++... . ..+.++++|.+ +|++++|. |++|. |.||++|++.+.
T Consensus 362 ~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~~ 441 (555)
T 2e4u_A 362 QESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGR 441 (555)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCCC
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCccce
Confidence 4468899999999999999998652 1 01257889998 99999999 99996 999999999889
Q ss_pred EEEEEecCCCC--ceEEEEEEeC
Q psy8577 89 YSLLDMDPDTS--EFRRNENEEL 109 (124)
Q Consensus 89 y~i~~~~~~~~--~~~~vg~~~~ 109 (124)
|+|+++...++ .+++||.|+.
T Consensus 442 y~I~~~~~~~g~~~~~~VG~~~~ 464 (555)
T 2e4u_A 442 YNVFNLQQTGGKYSYLKVGHWAE 464 (555)
T ss_dssp EEEEEEECTTSSCEEEEEEEESS
T ss_pred EEEEEEEecCCcEEEEEEEEecc
Confidence 99999953333 6899999974
No 13
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.40 E-value=2.6e-12 Score=96.65 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCe-eeeccceEEecC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT-YQGIAGDVHIDA 81 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~-f~G~tG~v~fd~ 81 (124)
..+|.+++++..+. .++.+++..|||+++++.||+++ +. .++..+.++|++++ |+|++|.++||+
T Consensus 271 ~~~f~~~~~~~~g~---------~p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~l~~~~~~~g~~G~i~f~~ 336 (366)
T 3td9_A 271 AKKFVEVYKEKYGK---------EPAALNALGYDAYMVLLDAIERA---GS--FDREKIAEEIRKTRNFNGASGIINIDE 336 (366)
T ss_dssp HHHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCCSEEETTEEECBCT
T ss_pred HHHHHHHHHHHHCC---------CCchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCCcccceeeEECC
Confidence 45677777766654 24789999999999999999998 53 78999999999998 999999999999
Q ss_pred CCCcccCEEEEEecCCCCceEEEEEEeC
Q psy8577 82 NGDRLADYSLLDMDPDTSEFRRNENEEL 109 (124)
Q Consensus 82 ~Gdr~~~y~i~~~~~~~~~~~~vg~~~~ 109 (124)
+|++...+.|.++ ++|+|+.|+.|++
T Consensus 337 ~g~~~~~~~i~~~--~~g~~~~v~~~~~ 362 (366)
T 3td9_A 337 NGDAIKSVVVNIV--KNGSVDFEAVINP 362 (366)
T ss_dssp TSCBCCCEEEEEE--ETTEEEEEEEECG
T ss_pred CCCccCceEEEEE--ECCEEEEEEecCh
Confidence 9998778999998 6889999999975
No 14
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.39 E-value=4.2e-12 Score=95.50 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
+.+|.+++++..+. .++.+++..|||++++++||+++ +..+.++..|.++|++++|+|++|.+.||++
T Consensus 271 ~~~f~~~~~~~~~~---------~p~~~~~~~yda~~~~~~al~~~---g~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~ 338 (375)
T 4evq_A 271 NQAFVKSFEAAYKI---------PPDVFAVQGWDAGQLLDAGVKAV---GGDVAKRKELNAAMAAASFASPRGPFKLSAA 338 (375)
T ss_dssp HHHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHT---TTCTTCHHHHHHHHHTCEEEETTEEEEBCTT
T ss_pred HHHHHHHHHHHHCC---------CCcHHHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHhcCCcccCCcceeECCC
Confidence 45677888766653 35779999999999999999987 5445789999999999999999999999999
Q ss_pred CCcccCEEEEEecCCCCceEEEEEEe
Q psy8577 83 GDRLADYSLLDMDPDTSEFRRNENEE 108 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~~~~~~vg~~~ 108 (124)
|++...+.|.++ ++++|+.|+.+-
T Consensus 339 g~~~~~~~i~~~--~~g~~~~v~~~~ 362 (375)
T 4evq_A 339 HNPVQNFYLREL--KGGKSVNLGLAA 362 (375)
T ss_dssp SCBCCCEEEEEE--ETTEEEEEEEEE
T ss_pred CCccccEEEEEE--ECCCcEEeeehh
Confidence 998888999999 788999998884
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.38 E-value=2.2e-12 Score=101.66 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHc--CC--------CCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEecC-
Q psy8577 29 TFVTAFYDAVILYSIALNETIAM--GG--------SQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDMDP- 96 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~~~--~~--------~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~~~- 96 (124)
.....+|||||++|+||++++.+ .. .+.++++|.++|++++|.+.+| .|.||++||+.+.|+|+++..
T Consensus 374 ~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~ 453 (481)
T 3mq4_A 374 GKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTT 453 (481)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC--
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEEC
Confidence 34567999999999999999752 10 1357889999999999999999 899999999989999999953
Q ss_pred CC--CceEEEEEEeCCCCceeccCC
Q psy8577 97 DT--SEFRRNENEELKSGVRGSIDE 119 (124)
Q Consensus 97 ~~--~~~~~vg~~~~~~g~~~~~~~ 119 (124)
.+ ..+++||.|+. .++|++
T Consensus 454 ~~~~~~~~~VG~~~~----~l~i~~ 474 (481)
T 3mq4_A 454 NTSNPGYRLIGQWTD----ELQLNI 474 (481)
T ss_dssp ---CCCEEEEEEEET----TEEEEC
T ss_pred CCCcEEEEEEEEEcC----ccEecc
Confidence 22 27899999982 355554
No 16
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.34 E-value=6e-12 Score=99.73 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcC----------CCCCChhHHHHHhhcCeeeeccc-eEEecCCCCcccCEEEEEecC-CC-
Q psy8577 32 TAFYDAVILYSIALNETIAMG----------GSQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLADYSLLDMDP-DT- 98 (124)
Q Consensus 32 ~~~yDAV~l~a~Al~~~~~~~----------~~~~~g~~l~~~~~~~~f~G~tG-~v~fd~~Gdr~~~y~i~~~~~-~~- 98 (124)
..+|+|||++|+||++++.+. ....++++|.++|++++|.+.+| .|.||++||..+.|+|+++.. .+
T Consensus 384 ~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~~~ 463 (496)
T 3ks9_A 384 GFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEAN 463 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECCCC
Confidence 469999999999999997521 01357889999999999999999 799999999989999999942 22
Q ss_pred -CceEEEEEEeCCCCceeccCCc
Q psy8577 99 -SEFRRNENEELKSGVRGSIDED 120 (124)
Q Consensus 99 -~~~~~vg~~~~~~g~~~~~~~~ 120 (124)
..+++||.|+ +..++|+++
T Consensus 464 ~~~~~~VG~~~---~~~l~i~~~ 483 (496)
T 3ks9_A 464 RYDYVHVGTWH---EGVLNIDDY 483 (496)
T ss_dssp CEEEEEEEEEE---TTEEEECTT
T ss_pred CEEEEEEEEEe---CCeEEEehh
Confidence 2689999997 345666654
No 17
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.30 E-value=1.9e-11 Score=91.55 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhH-HHHHhhcC-eeeeccceEEec
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSA-ITRRMWNR-TYQGIAGDVHID 80 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~-l~~~~~~~-~f~G~tG~v~fd 80 (124)
+.+|.+++++..+. .++.+++..|||+++++.|++++ ++ .++.. +.++|+++ +|+|++|.++||
T Consensus 260 ~~~f~~~~~~~~~~---------~p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~~l~~~~~~~g~~G~~~f~ 325 (358)
T 3hut_A 260 VVEFVSAYETLYGA---------IPTLFAAHGYDAVGIMLAAVGRA---GP--EVTRESLRDALAATDRYAGVTGITRFD 325 (358)
T ss_dssp HHHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHH---CT--TCCHHHHHHHHHTCCSEEETTEEEEEC
T ss_pred HHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHHHh---CC--CChHHHHHHHHHhcCCCcCCceeeEEC
Confidence 45677777666553 35789999999999999999997 43 57788 99999999 999999999999
Q ss_pred CCCCc-ccCEEEEEecCCCCceEEEEEEeC
Q psy8577 81 ANGDR-LADYSLLDMDPDTSEFRRNENEEL 109 (124)
Q Consensus 81 ~~Gdr-~~~y~i~~~~~~~~~~~~vg~~~~ 109 (124)
++|++ ...+.|.++ ++|+|+.+..++.
T Consensus 326 ~~g~~~~~~~~i~~~--~~G~~~~~~~~~~ 353 (358)
T 3hut_A 326 PETRETTKILTRLVV--REGDFRVIDREGH 353 (358)
T ss_dssp TTTCCEEECCEEEEE--ETTEEEEC-----
T ss_pred CCCCcCCCceEEEEE--ECCEEEEeccccc
Confidence 99998 678899999 6889999987765
No 18
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.27 E-value=8e-12 Score=98.63 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--cCC--------CCCChhHHH-HHhhcCeeeec------cc-eEEecCCCCcccCEEE
Q psy8577 30 FVTAFYDAVILYSIALNETIA--MGG--------SQSDGSAIT-RRMWNRTYQGI------AG-DVHIDANGDRLADYSL 91 (124)
Q Consensus 30 ~~~~~yDAV~l~a~Al~~~~~--~~~--------~~~~g~~l~-~~~~~~~f~G~------tG-~v~fd~~Gdr~~~y~i 91 (124)
....+|||||++|+||++++. +.. ...++++|. ++|++++|.+. +| .|.||++|++.+.|+|
T Consensus 364 ~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~~YdI 443 (479)
T 3sm9_A 364 KIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNV 443 (479)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCCCEEE
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcccceEE
Confidence 346899999999999999975 211 124788899 99999999998 55 8999999999899999
Q ss_pred EEecCCCC--ceEEEEEEeCCCCceeccCCc
Q psy8577 92 LDMDPDTS--EFRRNENEELKSGVRGSIDED 120 (124)
Q Consensus 92 ~~~~~~~~--~~~~vg~~~~~~g~~~~~~~~ 120 (124)
+++...++ .+++||.|+ ..++|+++
T Consensus 444 ~n~~~~~~~~~~~~VG~~~----~~l~i~~~ 470 (479)
T 3sm9_A 444 FNFQNVGGKYSYLKVGHWA----ETLSLDVN 470 (479)
T ss_dssp EEEEESSSCEEEEEEEEES----SSEEECGG
T ss_pred EEEEECCCcEEEEEEEEEe----ceEEEecc
Confidence 99943333 678999997 24666653
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.25 E-value=2e-11 Score=91.31 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
+.+|.+++++. +. .++.+++..|||+++++.||+++ ++ .++..|.++|++.+|.|++|+++||++
T Consensus 258 ~~~f~~~~~~~-~~---------~p~~~~~~~yda~~~~~~al~~a---g~--~~~~~~~~~l~~~~~~g~~G~~~f~~~ 322 (356)
T 3ipc_A 258 NKELVEKFKAA-GF---------NPEAYTLYSYAAMQAIAGAAKAA---GS--VEPEKVAEALKKGSFPTALGEISFDEK 322 (356)
T ss_dssp GHHHHHHHHHT-TC---------CCCTTHHHHHHHHHHHHHHHHHH---TC--CCHHHHHHHHTTCCBCCTTSSBCBCTT
T ss_pred HHHHHHHHHHc-CC---------CcchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCCCcceeeEECCC
Confidence 45677777655 43 24668999999999999999998 54 789999999999999999999999999
Q ss_pred CCcc-cCEEEEEecC-CCCceEEEEEEeCC
Q psy8577 83 GDRL-ADYSLLDMDP-DTSEFRRNENEELK 110 (124)
Q Consensus 83 Gdr~-~~y~i~~~~~-~~~~~~~vg~~~~~ 110 (124)
|++. ..+.|++++. .+|+|+++..|...
T Consensus 323 g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 323 GDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp SCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred CCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 9985 4789999942 23899999999753
No 20
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.24 E-value=1.6e-11 Score=93.92 Aligned_cols=77 Identities=12% Similarity=0.260 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcC------------C---CCCChhHHHHHhhcCeeeeccceEEecCCCCcc-cCEEEE
Q psy8577 29 TFVTAFYDAVILYSIALNETIAMG------------G---SQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL-ADYSLL 92 (124)
Q Consensus 29 ~~~~~~yDAV~l~a~Al~~~~~~~------------~---~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~-~~y~i~ 92 (124)
.+.+++|||||++|+|+++++.+. . .|.+|..|.++|++++|+|. ++.||++|+|. +.|+|+
T Consensus 258 ~~~~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Ii 335 (364)
T 3qel_B 258 GLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVII 335 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEE
Confidence 467899999999999999986521 0 14578899999999999987 89999999985 689999
Q ss_pred EecCCCCceEEEEEEe
Q psy8577 93 DMDPDTSEFRRNENEE 108 (124)
Q Consensus 93 ~~~~~~~~~~~vg~~~ 108 (124)
+++. ++.++.||.|+
T Consensus 336 nl~~-~~~~~~VG~W~ 350 (364)
T 3qel_B 336 LLNK-ERKWERVGKWK 350 (364)
T ss_dssp EECT-TSCEEEEEEEC
T ss_pred EEcC-CCCcEEEEEEC
Confidence 9932 45799999997
No 21
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.24 E-value=4.5e-11 Score=88.79 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++++..+. .++.++...|||++++++||+++ ++ .++..|.++|++.+|.|++|.++||++|
T Consensus 259 ~~f~~~~~~~~~~---------~~~~~~~~~yda~~~~~~al~~~---g~--~~~~~l~~~l~~~~~~g~~G~i~f~~~g 324 (346)
T 1usg_A 259 QGIVDALKADKKD---------PSGPYVWITYAAVQSLATALERT---GS--DEPLALVKDLKANGANTVIGPLNWDEKG 324 (346)
T ss_dssp HHHHHHHHHTTCC---------CCCHHHHHHHHHHHHHHHHHHHH---CC--CCHHHHHHHHHHHCEEETTEEECBCTTS
T ss_pred HHHHHHHHHHhCC---------CCchhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHHhCCCccceeeeEECCCC
Confidence 4566666544432 34678999999999999999998 43 6788999999999999999999999999
Q ss_pred Ccc-cCEEEEEecCC-CCceEEE
Q psy8577 84 DRL-ADYSLLDMDPD-TSEFRRN 104 (124)
Q Consensus 84 dr~-~~y~i~~~~~~-~~~~~~v 104 (124)
++. ..|.++++ + +|+|++|
T Consensus 325 ~~~~~~~~i~~~--~~~G~~~~~ 345 (346)
T 1usg_A 325 DLKGFDFGVFQW--HADGSSTKA 345 (346)
T ss_dssp SBSSCCCEEEEE--CTTSCEEEC
T ss_pred CccCCceEEEEE--ecCCEEEec
Confidence 985 57899998 6 7788765
No 22
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.20 E-value=8.2e-11 Score=88.11 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcC-eeeeccceEEecCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR-TYQGIAGDVHIDAN 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~-~f~G~tG~v~fd~~ 82 (124)
.+|.+++++..+. .++.+++..|||+++++.|++++ .+...+.++|..+ .|+|++|+++||++
T Consensus 265 ~~f~~~~~~~~g~---------~p~~~a~~~Yda~~~la~Ai~~a-------~~~~~v~~aL~~~~~~~g~~G~i~f~~~ 328 (353)
T 4gnr_A 265 KAFLDAYRAKYNE---------EPSTFAALAYDSVHLVANAAKGA-------KNSGEIKDNLAXTKDFEGVTGQTSFDAD 328 (353)
T ss_dssp HHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHTTC-------SSHHHHHHHHHTCCCEEETTEEECCCTT
T ss_pred HHHHHHHHHHhCC---------CCChhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhcCCCccCceeEEECCC
Confidence 4577777666654 35789999999999999999753 3677899999876 69999999999999
Q ss_pred CCcccCEEEEEecCCCCceEEEEEE
Q psy8577 83 GDRLADYSLLDMDPDTSEFRRNENE 107 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~~~~~~vg~~ 107 (124)
|++...+.+.++ ++|+|+.+...
T Consensus 329 g~~~~~~~i~~v--~~Gk~~~~~~v 351 (353)
T 4gnr_A 329 HNTVKTAYMMTM--NNGKVEAAEVV 351 (353)
T ss_dssp SCCCCCEEEEEE--ETTEEEEEEEE
T ss_pred cCCcCCeEEEEE--ECCEEEEEEEe
Confidence 998778888888 78888877554
No 23
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.17 E-value=2.7e-10 Score=85.35 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHh-cCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEec-
Q psy8577 3 FDFTAVKVKKVA-KEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHID- 80 (124)
Q Consensus 3 ~~~f~~~v~~~~-~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd- 80 (124)
..+|.+++ +.. +. .++.+++..|||++++++||+++ +. ..++..|.++|++++|+|++|+++||
T Consensus 263 ~~~f~~~~-~~~~~~---------~p~~~~~~~yda~~~~~~al~~~---g~-~~~~~~l~~al~~~~~~g~~G~i~f~~ 328 (368)
T 4eyg_A 263 NKEFVAAY-KKEFGQ---------RPGFMAVGGYDGIHLVFEALKKT---GG-KADGDSLIAAMKGMKWESPRGPISIDP 328 (368)
T ss_dssp HHHHHHHH-HHHHSS---------CCCHHHHHHHHHHHHHHHHHHHT---TT-CCSHHHHHHHHTTCEEEETTEEEEECT
T ss_pred HHHHHHHH-HHhCCC---------CCChHHHHHHHHHHHHHHHHHHh---CC-CCCHHHHHHHHHcCCcccCCCCeEECc
Confidence 35677777 554 32 35789999999999999999987 42 36899999999999999999999999
Q ss_pred CCCCcccCEEEEEecCCCCceEE--EEEEe
Q psy8577 81 ANGDRLADYSLLDMDPDTSEFRR--NENEE 108 (124)
Q Consensus 81 ~~Gdr~~~y~i~~~~~~~~~~~~--vg~~~ 108 (124)
++|++...+.|.+++..+|+|++ ++.|+
T Consensus 329 ~~~~~~~~~~i~~~~~~~G~~~~v~~~~~~ 358 (368)
T 4eyg_A 329 ETRDIVQNIYIRKVEKVDGELYNIEFAKFD 358 (368)
T ss_dssp TTCCEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCcccceEEEEEEecCCeEEEEEeeccc
Confidence 78888777888888544787755 45554
No 24
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.11 E-value=6e-10 Score=84.45 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC-
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA- 81 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~- 81 (124)
..+|.+++++..+. .++.+++..|||+++++.||+++ ++ .++..|.++|++++|.|++|+++||+
T Consensus 267 ~~~f~~~~~~~~~~---------~p~~~~~~~Yda~~~~a~Al~~a---g~--~~~~~v~~al~~~~~~g~~G~i~f~~~ 332 (387)
T 3i45_A 267 HRAFVEAYRARWKE---------DPFVGSLVGYNTLTAMAVAFEKA---GG--TESETLVETLKDMAFSTPMGPLSFRAS 332 (387)
T ss_dssp HHHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHTTTCEEEETTEEEEBCTT
T ss_pred HHHHHHHHHHHHCC---------CCCcHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCCcCCCCCeEEcCC
Confidence 35677777666543 34678999999999999999998 43 78999999999999999999999997
Q ss_pred CCCcccCEEEEEecCCCCceEEEEEEeCCCCc
Q psy8577 82 NGDRLADYSLLDMDPDTSEFRRNENEELKSGV 113 (124)
Q Consensus 82 ~Gdr~~~y~i~~~~~~~~~~~~vg~~~~~~g~ 113 (124)
+++......|..+...+ ....++.|...++.
T Consensus 333 ~~~~~~~~~i~~~~~~~-g~~~i~~w~~~~~~ 363 (387)
T 3i45_A 333 DHQSTMGAWVGRTALRD-GKGVMVDWRYVDGG 363 (387)
T ss_dssp TCBBCCCEEEEEEEEET-TEEEEEEEEEECGG
T ss_pred CCccccceeEEEEEeeC-CceeEEeeEEeCch
Confidence 44444455666553334 45788999865654
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.06 E-value=2.4e-09 Score=80.68 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDAN 82 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~ 82 (124)
..+|.+++++..+. .++.+++..|||++++++||+++ ++ .++..|.++|++++|.|++|.++||++
T Consensus 261 ~~~f~~~~~~~~g~---------~p~~~a~~~Yda~~~~~~Al~~a---g~--~~~~~l~~aL~~~~~~~~~G~~~f~~~ 326 (375)
T 3i09_A 261 SRQWAQRYFAKMKK---------MPSSLQAADYSSVTTYLKAVQAA---GS--TDSDKVMAQLKKMKIDDFYAKGYIRTD 326 (375)
T ss_dssp HHHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTSCEESSSCEEEECTT
T ss_pred HHHHHHHHHHHHCC---------CCcHHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhCCCccCCCCceEECCC
Confidence 35677777666653 35779999999999999999998 53 689999999999999999999999999
Q ss_pred CCcccCEEEEEecCC-C--C---ceEEEEEEe
Q psy8577 83 GDRLADYSLLDMDPD-T--S---EFRRNENEE 108 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~-~--~---~~~~vg~~~ 108 (124)
|++...+.|.++... . . .+..+....
T Consensus 327 g~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~ 358 (375)
T 3i09_A 327 GSMIHDMYLMEVKKPSESKEPWDYYKVVATIP 358 (375)
T ss_dssp SBEECCEEEEEECCGGGCCSTTCCEEEEEEEC
T ss_pred CCeeeeeEEEEEecccccccccchheeeeecC
Confidence 998778889888321 1 1 256666653
No 26
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.05 E-value=5.8e-10 Score=83.01 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcC--CCCCChhHHHHHhhcC-eeeeccceEEe
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMG--GSQSDGSAITRRMWNR-TYQGIAGDVHI 79 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~--~~~~~g~~l~~~~~~~-~f~G~tG~v~f 79 (124)
..+|.+++++..+.+ .++.+++..|||+++++.||+++.... ..+.++..|.++|+++ +|.|++|.++|
T Consensus 264 ~~~f~~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f 335 (362)
T 3snr_A 264 GMALVKVYEEKYGPS--------SRSQFAGHSYDAFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNF 335 (362)
T ss_dssp HHHHHHHHHHHHCTT--------CCCHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECC
T ss_pred HHHHHHHHHHHhCCC--------CCCchhHhHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEe
Confidence 356777776666541 357899999999999999999986532 2223477899999998 89999999999
Q ss_pred cCC---CCcccCEEEEEecCCCCceEEE
Q psy8577 80 DAN---GDRLADYSLLDMDPDTSEFRRN 104 (124)
Q Consensus 80 d~~---Gdr~~~y~i~~~~~~~~~~~~v 104 (124)
|++ |.+...+.+.++ ++|+|+.|
T Consensus 336 ~~~~~~g~~~~~~~i~~~--~~G~~~~v 361 (362)
T 3snr_A 336 TETDRYGLDDRSRILLTV--KNGKYVIV 361 (362)
T ss_dssp CSSCSSCCCGGGCEEEEE--ETTEEEEC
T ss_pred CCCCCCCCCCCCeEEEEE--ECCEEEEc
Confidence 876 444456788888 67888764
No 27
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.00 E-value=5.5e-09 Score=78.98 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecC-C
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDA-N 82 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~-~ 82 (124)
.+|.+++++..+. .++.+++..|||+++++.||+++ ++ .++..|.++|++++|+|++|.++||+ +
T Consensus 267 ~~f~~~y~~~~g~---------~p~~~a~~~Yda~~~l~~Al~~a---g~--~~~~~v~~aL~~~~~~g~~G~i~f~~~~ 332 (374)
T 3n0x_A 267 EWLVTEHQKRFNA---------PPDFFTAGGFSAAMAVVTAVQKA---KS--TDTEKLIAAMEGMEFDTPKGKMVFRKED 332 (374)
T ss_dssp HHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCEEEETTEEEEECTTT
T ss_pred HHHHHHHHHHHCC---------CCChhHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCccCCCCCEEECccc
Confidence 4577777666653 35789999999999999999998 54 78999999999999999999999995 5
Q ss_pred CCcccCEEEEEecCCC-CceEEEEEEe
Q psy8577 83 GDRLADYSLLDMDPDT-SEFRRNENEE 108 (124)
Q Consensus 83 Gdr~~~y~i~~~~~~~-~~~~~vg~~~ 108 (124)
|+....+.|.++...+ +.|..+..+.
T Consensus 333 ~~~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (374)
T 3n0x_A 333 HQALQSMYHFKVKVDPAVAWAVLEPVR 359 (374)
T ss_dssp CBEECCEEEEEEECCTTSSSCEEEEEE
T ss_pred CccccceEEEEEEeCCCcccccceEEE
Confidence 6666678888885432 4454444444
No 28
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=98.97 E-value=1.9e-09 Score=80.97 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcC--CCCCChhHHHHHhhcC-eeeeccceEEec
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMG--GSQSDGSAITRRMWNR-TYQGIAGDVHID 80 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~--~~~~~g~~l~~~~~~~-~f~G~tG~v~fd 80 (124)
.+|.+++++..+.+ .++.++...|||+++++.||+++...+ ..+.++..+.++|+++ +|.|++|.+.||
T Consensus 289 ~~f~~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~ 360 (386)
T 3sg0_A 289 ARFVDAYKAANGGA--------APTIFGVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMT 360 (386)
T ss_dssp HHHHHHHHHHTTTC--------CCCHHHHHHHHHHHHHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCC
T ss_pred HHHHHHHHHHhCCC--------CCChhHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEEC
Confidence 45777776655431 347899999999999999999986543 2223467899999998 899999999998
Q ss_pred CC---CCcccCEEEEEecCCCCceEEE
Q psy8577 81 AN---GDRLADYSLLDMDPDTSEFRRN 104 (124)
Q Consensus 81 ~~---Gdr~~~y~i~~~~~~~~~~~~v 104 (124)
++ |.....+.+.++ ++|+|+.+
T Consensus 361 ~~~~~g~~~~~~~i~~~--~~G~~~~~ 385 (386)
T 3sg0_A 361 PDNHNGYDERSAFLIEI--RDGAFRLK 385 (386)
T ss_dssp SSCSSCCCGGGCEEEEE--ETTEEEEC
T ss_pred CCcCCCCCCCceEEEEE--ECCEEEec
Confidence 75 434456788888 67888764
No 29
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.96 E-value=6.9e-09 Score=78.61 Aligned_cols=92 Identities=12% Similarity=0.187 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
.+|.+++++..+.+ ..++.+++..|||++++++||+++ ++ .++..|.++|++++|.|++|.++||+++
T Consensus 266 ~~f~~~~~~~~g~~-------~~~~~~~~~~yda~~~~~~Al~~a---g~--~~~~~l~~al~~~~~~g~~G~i~f~~~~ 333 (385)
T 1pea_A 266 RAFVQACHGFFPEN-------ATITAWAEAAYWQTLLLGRAAQAA---GN--WRVEDVQRHLYDIDIDAPQGPVRVERQN 333 (385)
T ss_dssp HHHHHHHHTTSCTT-------CCCCHHHHHHHHHHHHHHHHHHHH---TS--CCHHHHHHHHTTCCEEETTEEEEECTTT
T ss_pred HHHHHHHHHHhCCC-------CCCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhhCcccCCCCCeEEcCCC
Confidence 34666665443321 135679999999999999999998 43 5788999999999999999999999854
Q ss_pred -CcccCEEEEEecCCCCceEEEEEEe
Q psy8577 84 -DRLADYSLLDMDPDTSEFRRNENEE 108 (124)
Q Consensus 84 -dr~~~y~i~~~~~~~~~~~~vg~~~ 108 (124)
+....+.|.+++ .+|+|+.|...+
T Consensus 334 ~~~~~~~~i~~~~-~~g~~~~v~~~~ 358 (385)
T 1pea_A 334 NHSRLSSRIAEID-ARGVFQVRWQSP 358 (385)
T ss_dssp SCEEBCCEEEEEC-TTSCEEEEEECS
T ss_pred CccccceEEEEEc-CCCcEEEeecCC
Confidence 455577777773 367898886653
No 30
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=98.96 E-value=1.5e-09 Score=83.20 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHc--CCCCCChhHHHHHhhcCeeeeccceEEec
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAM--GGSQSDGSAITRRMWNRTYQGIAGDVHID 80 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~--~~~~~~g~~l~~~~~~~~f~G~tG~v~fd 80 (124)
..+|.+++++..+.. ..+.+++..|||+++++.|++++... ...+.++..|.++|++++|.|++|.++||
T Consensus 285 ~~~f~~~~~~~~g~~--------p~~~~a~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~ 356 (419)
T 3h5l_A 285 GDAFAKAYKERYGDL--------SSTASGCQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFH 356 (419)
T ss_dssp HHHHHHHHHHHHCTT--------SCHHHHHHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBC
T ss_pred HHHHHHHHHHHhCCC--------CCcchhHHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEEC
Confidence 456888887766532 22468999999999999999987321 11224677899999999999999999999
Q ss_pred CCCCccc-------------CEEEEEecCCCCce--EEE
Q psy8577 81 ANGDRLA-------------DYSLLDMDPDTSEF--RRN 104 (124)
Q Consensus 81 ~~Gdr~~-------------~y~i~~~~~~~~~~--~~v 104 (124)
++|++.. .+.|.++ +++++ +.|
T Consensus 357 ~~g~~~~~~~~~~~~~~~~~~~~i~q~--q~g~~~~~~V 393 (419)
T 3h5l_A 357 ADTQSAWSYPTETNDPSLGMPHIFSQI--FDKAEDGVLI 393 (419)
T ss_dssp TTTCBBCEETTTCSCTTSSEECEEEEC--CCTTSCCEEE
T ss_pred CCCCccccccCccCCccccCCceEEEe--eCCceeeEEE
Confidence 9998432 2446666 67777 555
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=98.94 E-value=2.1e-09 Score=81.43 Aligned_cols=98 Identities=6% Similarity=-0.019 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCCCcccCCCch-hhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCe----ee-------
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESV-STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT----YQ------- 71 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~-~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~----f~------- 71 (124)
.+|.+++++..+.+ +... +.++...|||+++++.||+++...+ .+.++..|.++|++++ |.
T Consensus 265 ~~f~~~~~~~~~~~------p~~~~~~~~~~~yda~~~~~~al~~ag~~~-~~~~~~~v~~aL~~~~~~~~~~~~~~~~~ 337 (392)
T 3lkb_A 265 IRLQKEIGRKYGRP------ENFIESVNYTNGMLAAAIAVEAIRRAQERF-KRITNETVYQAIVGMNGPNAFKPGFAVST 337 (392)
T ss_dssp HHHHHHHHHHTTCC------HHHHTCHHHHHHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHTCCGGGCBCCSSBCCC
T ss_pred HHHHHHHHHHhCCC------cccccchhHHHHHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHhcCCCcCccccccccc
Confidence 45777776655432 1111 3348999999999999999984322 2478899999999987 98
Q ss_pred eccceEEecCCCCc-ccCEEEEEecCCCCceEEEEEEeCC
Q psy8577 72 GIAGDVHIDANGDR-LADYSLLDMDPDTSEFRRNENEELK 110 (124)
Q Consensus 72 G~tG~v~fd~~Gdr-~~~y~i~~~~~~~~~~~~vg~~~~~ 110 (124)
|++|.++||++|++ ...+.+.++ ++|+|++|+.|...
T Consensus 338 G~~G~i~f~~~~~~~~~~~~i~~~--~~g~~~~v~~w~~~ 375 (392)
T 3lkb_A 338 KQGVEIDFTKSEHTGAEGLRILEA--KGGRFVPVTEPFTS 375 (392)
T ss_dssp SSSCSBCCCSSCCEEECCBEEEEE--ETTEEEECSCCBCC
T ss_pred ccceeeEeCCCCcCCcccEEEEEE--eCCEEEEeccccch
Confidence 99999999998876 457888888 78899999999754
No 32
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=98.92 E-value=1.2e-08 Score=77.04 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccc-eEEecC
Q psy8577 3 FDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAG-DVHIDA 81 (124)
Q Consensus 3 ~~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG-~v~fd~ 81 (124)
..+|.+++++..+. .++.+++..|||+++++.||+++ ++ .++..|.++|++++|.|+.| .++||+
T Consensus 264 ~~~f~~~~~~~~g~---------~p~~~~~~~Yda~~~~~~Al~~a---g~--~~~~~v~~aL~~~~~~~~~G~~~~f~~ 329 (379)
T 3n0w_A 264 TRAFAKRFYAKMGK---------MPTNNQAGGYSAALQYLKAVNAI---GS--KDPQKVFAYLKTIKFDDAVTRHGTLRP 329 (379)
T ss_dssp HHHHHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHH---TC--CCHHHHHHHHTTCCBCSSSCCSBEECT
T ss_pred HHHHHHHHHHHHCC---------CCChHHHHHHHHHHHHHHHHHHh---CC--CCHHHHHHHHhcCCccccCCCceeECC
Confidence 35677777666653 35779999999999999999998 53 68999999999999999988 499999
Q ss_pred CCCcccCEEEEEec
Q psy8577 82 NGDRLADYSLLDMD 95 (124)
Q Consensus 82 ~Gdr~~~y~i~~~~ 95 (124)
+|++...+.|.++.
T Consensus 330 ~g~~~~~~~i~~~~ 343 (379)
T 3n0w_A 330 GGRLVRDMYLVRAK 343 (379)
T ss_dssp TSBEECCEEEEEEC
T ss_pred CCCcccceEEEEEE
Confidence 99988888899883
No 33
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=98.90 E-value=8.6e-09 Score=78.04 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~G 83 (124)
..|.+.+++..+++ ..++.++...|||+++++.||++. +. ..++..++++|++++|.|++|.++||+++
T Consensus 265 ~~f~~~~~~~~~~~-------~~~~~~a~~~Yda~~~l~~Ai~~~---ag-~~d~~~v~~al~~~~~~~~~G~i~fd~~~ 333 (371)
T 4f06_A 265 KAFLALLQKGGAKL-------DEVTMTSVAAYDGARLIYKMIEAT---SG-KSDPDKAIAAVKGMKWVSPRGEVSIDPET 333 (371)
T ss_dssp HHHHHHHHHTTCCG-------GGCCHHHHHHHHHHHHHHHHHHHT---TT-SCCHHHHHHHHTTCEEEETTEEEEECTTT
T ss_pred HHHHHHHHHhcCCC-------CCccchHHHHHHHHHHHHHHHHHh---cC-CCCHHHHHHHHhCCCeeCCcEEEEEcCCC
Confidence 35666666555421 145778999999999999999864 32 26889999999999999999999999876
Q ss_pred Cc-ccCEEEEEecCCCCceE--EEEEEe
Q psy8577 84 DR-LADYSLLDMDPDTSEFR--RNENEE 108 (124)
Q Consensus 84 dr-~~~y~i~~~~~~~~~~~--~vg~~~ 108 (124)
.. ...+.|.+++..+|+++ .+..+.
T Consensus 334 ~~~~~~~~i~~v~~~dGk~v~~~~~~~~ 361 (371)
T 4f06_A 334 RHITQNVYLREVEKVDGKLINRELETFK 361 (371)
T ss_dssp CBEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcccCCEEEEEEEecCCEEEEEEEEEEe
Confidence 54 44666777744467664 344443
No 34
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=98.81 E-value=8.2e-09 Score=78.36 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeee--eccc-eEEecC
Q psy8577 5 FTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ--GIAG-DVHIDA 81 (124)
Q Consensus 5 ~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~--G~tG-~v~fd~ 81 (124)
+|.+++++..++. +| ..+.+++..|||+++++.||+++...+....++..|.++|++..|. |++| +++||+
T Consensus 270 ~f~~~~~~~~~~~-----~p-~~~~~~~~~yda~~~l~~Al~~a~~~g~~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~ 343 (391)
T 3eaf_A 270 QTIFEAARMNGVS-----ED-QINLRVVQGFVNVWLLIKAIESVTSQDLQERGGEALKEALEANTFDLGGITADTIDYEP 343 (391)
T ss_dssp HHHHHHHHHTTCC-----GG-GCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHTHHHHHHHHHHCCBCSTTCBSSCBCCBT
T ss_pred HHHHHHHHHhCCC-----Cc-ccccHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCCCCccccceeeCC
Confidence 4777776655411 00 1247899999999999999997621110025678899999998899 9999 999997
Q ss_pred CCC-cccCEEEEEecCCCCceEEEEEEeCCC
Q psy8577 82 NGD-RLADYSLLDMDPDTSEFRRNENEELKS 111 (124)
Q Consensus 82 ~Gd-r~~~y~i~~~~~~~~~~~~vg~~~~~~ 111 (124)
+|. ....+.|.+++ .+|+|++|+.|...+
T Consensus 344 ~~~~~~~~~~i~~~~-~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 344 GFHLAYRKVFIIKLG-ENGELQLMGKFEAPS 373 (391)
T ss_dssp TBCCCCCCEEEEEEC-TTSSEEEEEEECCCT
T ss_pred CCCCcceEEEEEEEe-cCCEEEEeeeecCcc
Confidence 654 45577777773 467999999997543
No 35
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=98.69 E-value=2.2e-07 Score=69.62 Aligned_cols=80 Identities=10% Similarity=-0.025 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcC-eeee-ccceEEecC
Q psy8577 4 DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR-TYQG-IAGDVHIDA 81 (124)
Q Consensus 4 ~~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~-~f~G-~tG~v~fd~ 81 (124)
.+|.+.+++..+.. ..++.++...|||+++++.||+++ +. ..++..|.++|+++ .|.| .+|.++||+
T Consensus 266 ~~f~~~~~~~~~~~-------~~p~~~a~~~yda~~~~~~al~~a---g~-~~~~~~v~~aL~~~~~~~~~~~g~i~f~~ 334 (364)
T 3lop_A 266 REFNRARAAVGAKD-------VDLSFRAVEGFVAAKVLAEAIRRA---GP-KPTREQVRHALTELRDYDVGGGFTVDFTD 334 (364)
T ss_dssp HHHHHHHHHHTCTT-------CCCCHHHHHHHHHHHHHHHHHHHH---CS-SCCHHHHHHHHHTCEEEESSTTCEEECSS
T ss_pred HHHHHHHHHhcCCC-------CCCChHHHHHHHHHHHHHHHHHHh---CC-CCCHHHHHHHHHhcCCccCCCCeeeecCC
Confidence 45667776554320 135789999999999999999997 52 36899999999999 7999 999999998
Q ss_pred CCCc-ccCEEEEEe
Q psy8577 82 NGDR-LADYSLLDM 94 (124)
Q Consensus 82 ~Gdr-~~~y~i~~~ 94 (124)
++.+ .....|..+
T Consensus 335 ~~~~~~~~~~i~~~ 348 (364)
T 3lop_A 335 RSRPGSHYIELGVV 348 (364)
T ss_dssp TTSCSCCCCEEEEE
T ss_pred CCcCCcceEEEEEE
Confidence 8654 335566666
No 36
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=98.30 E-value=7.2e-07 Score=66.45 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCCceEEEEE
Q psy8577 28 STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNEN 106 (124)
Q Consensus 28 ~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~vg~ 106 (124)
..+.++.|||+.+++.+.+.. .+....|.|+||.++||++|+......+.++ ++|+++||+.
T Consensus 260 ~~~~AlgyDA~~l~~~l~~~~---------------~~~~~~f~G~tG~i~fd~~G~~~r~l~~~~~--~~G~~vpv~d 321 (327)
T 3ckm_A 260 MRLYAMGADAWLLINQFNELR---------------QVPGYRLSGLTGILSADTNCNVERDMTWYQY--QDGAIVPVVD 321 (327)
T ss_dssp HHHHHHHHHHHHHHHTHHHHH---------------HSTTCCEEETTEEEEECTTCBEEEECEEEEE--ETTEEEECC-
T ss_pred CchHHHHHHHHHHHHHHHHhc---------------CCCCCCceeceEEEEECCCCCCccccEEEEE--ECCEEEEccc
Confidence 346788999998876544321 2344579999999999999985556777888 7899999854
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=97.73 E-value=4.6e-05 Score=57.36 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCCcccCEEEEEecCCCCceEEE
Q psy8577 27 VSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRN 104 (124)
Q Consensus 27 ~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gdr~~~y~i~~~~~~~~~~~~v 104 (124)
+....++.|||+.+++.. .++ ..+....|.|+||.++||++|+......+..+ ++|++++|
T Consensus 257 ~~rl~AlgyDA~~l~~~l-~~l--------------~~~~~~~~~G~tG~l~~~~~g~~~R~l~~~~~--~~G~~~~~ 317 (325)
T 2h4a_A 257 LMRLYAMGADAWLLINQF-NEL--------------RQVPGYRLSGLTGILSADTNCNVERDMTWYQY--QDGAIVPV 317 (325)
T ss_dssp HHHHHHHHHHHHHHHHTH-HHH--------------HHSTTCCEEETTEEEEECTTCBEEEECEEEEE--ETTEEEEC
T ss_pred hHHHHHHHHHHHHHHHHH-HHH--------------hhCCCCeeccCceeEEECCCCeEEEeechhhc--cCCeEEEe
Confidence 455679999999986553 322 12344689999999999999986556777777 77888876
No 38
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=38.76 E-value=26 Score=23.53 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcCeeeeccceEEecCCCC-c
Q psy8577 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGD-R 85 (124)
Q Consensus 24 ~~~~~~~~~~~yDAV~l~a~Al~~~~~~~~~~~~g~~l~~~~~~~~f~G~tG~v~fd~~Gd-r 85 (124)
|++|.. +-+|..|..|+.+++.++++.. -|| | |-.+.|.---.++. |.+|| |
T Consensus 89 ptdP~i--YR~yE~v~vYG~~~K~li~E~F--GDG--I---MSAIdF~~~v~k~~-dp~Gd~r 141 (156)
T 1dw9_A 89 PTDPTM--YRFYEMLQVYGTTLKALVHEKF--GDG--I---ISAINFKLDVKKVA-DPEGGER 141 (156)
T ss_dssp CCSHHH--HHHHHHHHHHHHHHHHHHHHHT--CSE--E---EEEEEEEEEEEEEE-CTTSSEE
T ss_pred CCCCee--hhHHHHHHHhhHHHHHHHHHHc--Ccc--e---EeeeeeeeeeEeec-CCCCCce
Confidence 444444 4579999999999999987521 233 2 22445643223333 77787 6
No 39
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=31.37 E-value=26 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=19.7
Q ss_pred eccceEEecCCCCcccCEEEEEe
Q psy8577 72 GIAGDVHIDANGDRLADYSLLDM 94 (124)
Q Consensus 72 G~tG~v~fd~~Gdr~~~y~i~~~ 94 (124)
+++|.+.||=+|+++..|+|.+=
T Consensus 155 aI~GT~lfDW~g~~IsgYsViQP 177 (187)
T 3kcp_B 155 AISGTQLFDWDGEVITGYEVIQP 177 (187)
T ss_dssp CBTTEEEEETTSCEECSCEEECC
T ss_pred ccceeEEEecCCCEEeceEEeCC
Confidence 57899999999999888998864
No 40
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=27.18 E-value=1e+02 Score=18.24 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=22.1
Q ss_pred EecCCCCc-ccCEEEEEec---CCCCce-EEEEEEeCCC
Q psy8577 78 HIDANGDR-LADYSLLDMD---PDTSEF-RRNENEELKS 111 (124)
Q Consensus 78 ~fd~~Gdr-~~~y~i~~~~---~~~~~~-~~vg~~~~~~ 111 (124)
.+--.|-. .+.|.|...+ +.+|+| ..||+||+..
T Consensus 5 RL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~~ 43 (82)
T 3r8n_P 5 RLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIA 43 (82)
T ss_dssp EEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTTC
T ss_pred hhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCCC
Confidence 33344542 4789988884 345665 5699999843
No 41
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=21.30 E-value=1.1e+02 Score=19.26 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=19.7
Q ss_pred ccCEEEEEecC---CCCce-EEEEEEeCCCCceeccC
Q psy8577 86 LADYSLLDMDP---DTSEF-RRNENEELKSGVRGSID 118 (124)
Q Consensus 86 ~~~y~i~~~~~---~~~~~-~~vg~~~~~~g~~~~~~ 118 (124)
.|.|.|...+. .+|+| ..||+||+.....+.+|
T Consensus 15 rPfYrIVVaDsR~~RDGr~IE~lG~YnP~~~~~v~ld 51 (112)
T 3bn0_A 15 HPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVY 51 (112)
T ss_dssp EEEEEEEEEECC------CSEEEEEEETTTTEEEEEC
T ss_pred CCeEEEEEEecCCCCCCCCEeEeeeccCCCcceEEEc
Confidence 46888888843 45554 67999998633345554
No 42
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=21.05 E-value=52 Score=22.17 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=17.9
Q ss_pred eccceEEecCCCCcccCEEEEE
Q psy8577 72 GIAGDVHIDANGDRLADYSLLD 93 (124)
Q Consensus 72 G~tG~v~fd~~Gdr~~~y~i~~ 93 (124)
+++|...||=+|+++..|+|.+
T Consensus 143 ai~GT~lfDWdg~~i~gY~V~Q 164 (166)
T 2bm3_A 143 AISGTQLFDWDGEVITGYEVIQ 164 (166)
T ss_dssp CBTTEEEEETTSCEECSCEEEC
T ss_pred cccceEEEecCCCeEeceEEeC
Confidence 5789999998898877888764
Done!