RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8577
(124 letters)
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 101 bits (253), Expect = 9e-27
Identities = 43/94 (45%), Positives = 65/94 (69%)
Query: 9 KVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR 68
++K +A + +NFT + + +F+D ++LY A+ ET+A GG+ +DG IT+RMWNR
Sbjct: 296 QLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNR 355
Query: 69 TYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFR 102
++QG+ G + ID NGDR D+SL DMDP+T FR
Sbjct: 356 SFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFR 389
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 91.3 bits (226), Expect = 5e-23
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 16 EGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAG 75
E + V+ FV F+DA++LY +AL+E + G S+ DG I ++ WNRT++GIAG
Sbjct: 301 EKQGLNM-EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAG 359
Query: 76 DVHIDANGDRLADYSLLDM-DPDTSEFR 102
V IDANGDR D+S++ M D +
Sbjct: 360 QVSIDANGDRYGDFSVIAMTDVEAGTQE 387
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 47.1 bits (111), Expect = 2e-07
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 18/103 (17%)
Query: 18 YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSA 60
+ + YD V + + A G
Sbjct: 263 DHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGID 322
Query: 61 ITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
I R + ++G+ G+V + G R +Y+L ++ R+
Sbjct: 323 IQRALQQVRFEGLTGNVQFNEKGRR-TNYTLHVIEMKHDGIRK 364
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 44.1 bits (104), Expect = 2e-06
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 15/95 (15%)
Query: 18 YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAIT--------------R 63
YN S F YD + + + L + + S I
Sbjct: 301 YNNKRSGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILN 360
Query: 64 RMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDT 98
M + G+ G V NG+R+
Sbjct: 361 AMNETNFFGVTGQVVFR-NGERMGTIKFTQFQDSR 394
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 43.6 bits (103), Expect = 3e-06
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 9 KVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNE--TIAMGGSQSDGSAITRRMW 66
AK Y +G+ S + Y A+ YSIA A+ R+
Sbjct: 284 MGDAFAKA-YKERYGDLSSTASGCQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLR 342
Query: 67 NRTYQGIAGDVHIDANGDRLADYSLLDMDP 96
+ ++G G + A+ Y DP
Sbjct: 343 SLIFRGPVGTMRFHADTQSAWSYPTETNDP 372
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 43.2 bits (101), Expect = 4e-06
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 23 GNESVSTFVTAFYDAVILYSIALNETIAMGGSQS-----------------DGSAITRRM 65
++ YDAV + + A S G I R +
Sbjct: 265 HTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERAL 324
Query: 66 WNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
+G++G++ D NG R +Y++ M+ T+ R+
Sbjct: 325 KQVQVEGLSGNIKFDQNGKR-INYTINIMELKTNGPRK 361
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 42.9 bits (100), Expect = 6e-06
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 18/102 (17%)
Query: 19 NFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQ-----------------SDGSAI 61
N + +DA+++ + A S G I
Sbjct: 267 FPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDI 326
Query: 62 TRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
R + QG+ G++ D G R +Y++ + S R+
Sbjct: 327 ERALKMVQVQGMTGNIQFDTYGRR-TNYTIDVYEMKVSGSRK 367
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 41.7 bits (97), Expect = 2e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 23 GNESVSTFVTAFYDAVILYSIALNETI------------AMGGSQSDGSAITRRMWNRTY 70
+ +DAV + A+ E G+++ + Y
Sbjct: 277 TYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEY 336
Query: 71 QGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
G+ G V ++ G R +Y+L ++ R
Sbjct: 337 DGLTGRVEFNSKGQR-TNYTLRILEKSRQGHRE 368
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 40.1 bits (93), Expect = 5e-05
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 18 YNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSD---------GSAITRRMWNR 68
+ + ++T YDAV + S+A+ + M S G+ +
Sbjct: 276 PDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEA 335
Query: 69 TYQGIAGDVHIDANGDRLADYSL 91
++G+ G + + D+ L
Sbjct: 336 HWEGLTGRITFNKTNGLRTDFDL 358
>4evq_A Putative ABC transporter subunit, substrate-bindi component;
structural genomics, PSI-biology, midwest center for
structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas
palustris} PDB: 4evr_A
Length = 375
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83
F +DA L + GG + + M ++ G + A
Sbjct: 283 KIPPDVFAVQGWDAGQLLDAGVKAV---GGDVAKRKELNAAMAAASFASPRGPFKLSAAH 339
Query: 84 DRLADYSLL 92
+ + ++ L
Sbjct: 340 NPVQNFYLR 348
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY
crystallography, protein structure, ABC transport
systems, transport protein; 1.53A {Escherichia coli}
SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A
1z17_A 1z18_A 2liv_A
Length = 346
Score = 34.2 bits (79), Expect = 0.007
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83
+ +V Y AV + AL T GS + A+ + + + G ++ D G
Sbjct: 270 KDPSGPYVWITYAAVQSLATALERT----GS-DEPLALVKDLKANGANTVIGPLNWDEKG 324
Query: 84 DR 85
D
Sbjct: 325 DL 326
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap
domain, transport protein; 1.30A {Agrobacterium
tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Length = 356
Score = 33.8 bits (78), Expect = 0.009
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 24/91 (26%)
Query: 14 AKEGYNFTFG-----NESVSTFVTAF--------------YDAVILYSIALNETIAMGGS 54
A EG TFG V F Y A+ + A GS
Sbjct: 240 AVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAA----GS 295
Query: 55 QSDGSAITRRMWNRTYQGIAGDVHIDANGDR 85
+ + + ++ G++ D GD
Sbjct: 296 -VEPEKVAEALKKGSFPTALGEISFDEKGDP 325
>3td9_A Branched chain amino acid ABC transporter, peripl amino
acid-binding protein; leucine binding, structural
genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Length = 366
Score = 32.2 bits (74), Expect = 0.030
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 9 KVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN- 67
KK + Y +G E + YDA ++ A+ GS D I +
Sbjct: 270 VAKKFVEV-YKEKYGKE-PAALNALGYDAYMVLLDAIERA----GS-FDREKIAEEIRKT 322
Query: 68 RTYQGIAGDVHIDANGDRLADYSLL 92
R + G +G ++ID NGD + +
Sbjct: 323 RNFNGASGIINIDENGDAIKSVVVN 347
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 31.4 bits (71), Expect = 0.060
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 17 GYNFTFGNESVSTFVTAFYDAVILYSIA-----LNETIAMGGSQS-------DGSAITRR 64
G + + E FV DAV Y++A +N+ + G + +
Sbjct: 365 GKDSNYEQEGKVQFV---IDAV--YAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKY 419
Query: 65 MWNRTYQGIAGD-VHIDANGDRLADYSLL 92
+ N + G AG V + NGD Y +
Sbjct: 420 IRNVNFNGSAGTPVMFNKNGDAPGRYDIF 448
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 30.8 bits (69), Expect = 0.082
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 57 DGSAITRRMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
+ + Y G V +GD A Y++ + D F R
Sbjct: 171 PNDGEVLDVSSGRYIINPGAVGQPRDGDPRASYAIFEPDAQRVTFHR 217
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular
ligand-binding receptor,transport protein; 1.93A
{Rhodospirillum rubrum atcc 11170}
Length = 358
Score = 30.7 bits (70), Expect = 0.088
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWN-RTYQGIAGDVHIDAN 82
+ F YDAV + A+ G + ++ + Y G+ G D
Sbjct: 272 GAIPTLFAAHGYDAVGIMLAAVGRA----GPEVTRESLRDALAATDRYAGVTGITRFDPE 327
Query: 83 GDR 85
Sbjct: 328 TRE 330
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 30.5 bits (68), Expect = 0.091
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 64 RMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
M G V + A ++L+D+D +F
Sbjct: 182 AMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIE 221
>3snr_A Extracellular ligand-binding receptor; structural genomics,
APC102214, PSI-biology, midwest center structural
genomics, MCSG; HET: MSE TYR PHE; 1.49A
{Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A*
3ukj_A* 3tx6_A*
Length = 362
Score = 30.0 bits (68), Expect = 0.15
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 15 KEGYNFTFGNESVSTFVTAFYDAVILYSIALNE--TIAMGGSQSDGSAITRRMWN-RTYQ 71
+ Y +G S S F YDA + + A G+Q A+ +
Sbjct: 268 VKVYEEKYGPSSRSQFAGHSYDAFKVLERVVPVALKKAKPGTQEFREALREAFLTEKDIA 327
Query: 72 GIAGDVHIDANGD 84
G +
Sbjct: 328 ASQGVYNFTETDR 340
>3sg0_A Extracellular ligand-binding receptor; structural genomics,
PSI-biology; HET: 173; 1.20A {Rhodopseudomonas
palustris} PDB: 4dqd_A*
Length = 386
Score = 30.0 bits (68), Expect = 0.18
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 9 KVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNE--TIAMGGSQSDGSAITRRMW 66
KVK + Y G + + F +D++ L A+ A G+ +AI ++
Sbjct: 286 KVKARFVDAYKAANGGAAPTIFGVHLWDSMTLVENAIPAALKAAKPGTPEFRAAIRDQIE 345
Query: 67 N-RTYQGIAGDVHI---DANGDRLADYSLL 92
+ G ++ + NG L+
Sbjct: 346 KSKDLALNNGLSNMTPDNHNGYDERSAFLI 375
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG,
midwest center for structural genomics, transporter;
HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB:
4ey3_A* 3t0n_A* 4eyk_A*
Length = 368
Score = 29.6 bits (67), Expect = 0.20
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 24 NESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANG 83
+ YD + L AL +T GG +DG ++ M ++ G + ID
Sbjct: 275 GQRPGFMAVGGYDGIHLVFEALKKT---GGK-ADGDSLIAAMKGMKWESPRGPISIDPET 330
>3i45_A Twin-arginine translocation pathway signal protei; structural
genomics; 1.36A {Rhodospirillum rubrum}
Length = 387
Score = 28.9 bits (65), Expect = 0.45
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 20/81 (24%)
Query: 18 YNFTFGNESVSTFVTAF---------------YDAVILYSIALNETIAMGGSQSDGSAIT 62
+ FV A+ Y+ + ++A + G ++ +
Sbjct: 258 PWYDIDTAPHRAFVEAYRARWKEDPFVGSLVGYNTLTAMAVAFEKA----GG-TESETLV 312
Query: 63 RRMWNRTYQGIAGDVHIDANG 83
+ + + G + A+
Sbjct: 313 ETLKDMAFSTPMGPLSFRASD 333
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 29.0 bits (64), Expect = 0.48
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 17/84 (20%)
Query: 19 NFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQS-----------------DGSAI 61
++ YDAV + + A S G I
Sbjct: 261 YPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEI 320
Query: 62 TRRMWNRTYQGIAGDVHIDANGDR 85
R + +G++G++ D NG R
Sbjct: 321 ERALKQVQVEGLSGNIKFDQNGKR 344
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 27.1 bits (60), Expect = 1.8
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 24 NESVSTFVTAFYDAVILYSIA-----LNETIAMGGSQS-------DGSAITRRMWNRTYQ 71
+S FV +A+ Y++A ++ + G DGS + + ++
Sbjct: 379 QDSKMGFV---INAI--YAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFI 433
Query: 72 GIAGD-VHIDANGDRLADYSLL 92
G++G+ V D GD Y ++
Sbjct: 434 GVSGEEVWFDEKGDAPGRYDIM 455
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 26.6 bits (59), Expect = 2.6
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 91 LLDMDPDTSEFRRNENEELKSGV 113
LL P + R + L V
Sbjct: 243 LLGAQPGSQRLRHHAGNPLHLDV 265
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes
xylosoxidans, electron transfer, cupredoxin, electron
transport; 1.13A {Alcaligenes xylosoxydans} SCOP:
b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A
2aza_A 1a4a_A 1a4b_A 1a4c_A
Length = 129
Score = 26.2 bits (57), Expect = 2.7
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 1 MRFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVIL 40
M+++ + V K K+ + + V ++ V+
Sbjct: 13 MQYNVKEIVVDKSCKQ-FTMHLKHVGKMAKVAMGHNLVLT 51
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron
transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB:
1uat_A
Length = 129
Score = 25.8 bits (56), Expect = 3.0
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 1 MRFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQS 56
M + ++ V E + F ++ ++ V+ S + + G
Sbjct: 13 MTYSTRSISVPASCAE-FTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAG 67
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein,
anticancer, anti-HIV/AIDS, antiparasitic activity,
antitumor protein; 1.90A {Neisseria gonorrhoeae}
Length = 167
Score = 26.0 bits (56), Expect = 3.7
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1 MRFDFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSD 57
M+F+ ++V K A + + T + + ++ VI + ++ G +D
Sbjct: 53 MQFNTKDIQVSK-ACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAAD 108
>3rlf_F Maltose transport system permease protein MALF; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F*
3pv0_F* 3puw_F* 3fh6_F
Length = 514
Score = 26.0 bits (57), Expect = 4.0
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 30 FVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAG-DVHIDANGDRLAD 88
+ F ++ +IA+ T +Q + +R++Q + + GD +
Sbjct: 74 GMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGD---E 130
Query: 89 YSLLDMDPDTSEFRRNENEELKSGVRGSIDE 119
+ L D +T + ++ + + + E
Sbjct: 131 WQLALSDGETGKNYLSDAFKFGGEQKLQLKE 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 4.3
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 64 RMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFR 102
+W I DV + N +L YSL++ P S
Sbjct: 394 LIWF---DVIKSDVMVVVN--KLHKYSLVEKQPKESTIS 427
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics, lipid
protein; 1.70A {Colwellia psychrerythraea}
Length = 609
Score = 25.4 bits (55), Expect = 5.6
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 69 TYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRRNENE 107
T G++ + YS + +E N
Sbjct: 51 TMYGLSQKDIGQVISSDMEFYSPENEKQLRAELLSISNT 89
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 25.3 bits (56), Expect = 5.9
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 6/45 (13%)
Query: 70 YQGIAGDVHID-----ANGDRLADYS-LLDMDPDTSEFRRNENEE 108
+ G + +D G D L + + R E
Sbjct: 108 FTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHE 152
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 24.9 bits (55), Expect = 6.8
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 70 YQGIAGDVHID--------ANGDRLADYS-LLDMDPDTSEFRRNENEEL 109
YQG + D G D + L D+ P + RR
Sbjct: 127 YQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP 175
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 25.1 bits (55), Expect = 7.2
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 27/106 (25%)
Query: 19 NFTFGNESVSTFVTAFYDAVILYSIA-----LNETIAMGGSQSDGSAITRRMW------- 66
+ + ES FV +AV Y++A + T+ ++ +
Sbjct: 357 SSNYEQESKIMFV---VNAV--YAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYL 411
Query: 67 -NRTYQGIAGD-------VHIDANGDRLADYSLL--DMDPDTSEFR 102
+ V D GD + Y++ +
Sbjct: 412 LKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNLQQTGGKYSYL 457
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 24.7 bits (53), Expect = 9.8
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 34 FYDAVILYSIALNETIAMGGSQSDGSAITRRM--WNRTYQ------------GIAGDVHI 79
DAV + + A++E M W G+ G +
Sbjct: 281 ISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEF 340
Query: 80 DANGDR-LADYSLLDMDPD 97
+ +GDR A YS++++
Sbjct: 341 NEDGDRKFAQYSIMNLQNR 359
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.379
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,959,181
Number of extensions: 109129
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 43
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)