RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8577
         (124 letters)



>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 86.4 bits (212), Expect = 1e-21
 Identities = 43/94 (45%), Positives = 65/94 (69%)

Query: 9   KVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNR 68
           ++K +A + +NFT  +   +    +F+D ++LY  A+ ET+A GG+ +DG  IT+RMWNR
Sbjct: 296 QLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNR 355

Query: 69  TYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFR 102
           ++QG+ G + ID NGDR  D+SL DMDP+T  FR
Sbjct: 356 SFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFR 389


>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 74.0 bits (180), Expect = 3e-17
 Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 3/91 (3%)

Query: 4   DFTAVKVKKVAKEGYNFTFGNESVSTFVTAFYDAVILYSIALNETIAMGGSQSDGSAITR 63
            F+      V K+G N     + V+ FV  F+DA++LY +AL+E +  G S+ DG  I +
Sbjct: 289 KFSMEVKSSVEKQGLNM---EDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQ 345

Query: 64  RMWNRTYQGIAGDVHIDANGDRLADYSLLDM 94
           + WNRT++GIAG V IDANGDR  D+S++ M
Sbjct: 346 QTWNRTFEGIAGQVSIDANGDRYGDFSVIAM 376


>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 11/76 (14%)

Query: 28  STFVTAFYDAVILYSIALNETIAMGGSQS----------DGSAITRRMWNRTYQGIAGD- 76
            + +    +A+   +  L                     DG  +   +   ++ G++G+ 
Sbjct: 372 DSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEE 431

Query: 77  VHIDANGDRLADYSLL 92
           V  D  GD    Y ++
Sbjct: 432 VWFDEKGDAPGRYDIM 447


>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
           [TaxId: 562]}
          Length = 346

 Score = 38.6 bits (88), Expect = 6e-05
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 28  STFVTAFYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQGIAGDVHIDANGDRL- 86
             +V   Y AV   + AL  T    GS  +  A+ + +       + G ++ D  GD   
Sbjct: 274 GPYVWITYAAVQSLATALERT----GS-DEPLALVKDLKANGANTVIGPLNWDEKGDLKG 328

Query: 87  ADYSLLDMDPD 97
            D+ +     D
Sbjct: 329 FDFGVFQWHAD 339


>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 251

 Score = 28.9 bits (63), Expect = 0.15
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 64  RMWNRTYQGIAGDVHIDANGDRLADYSLLDMDPDTSEFRR 103
            M         G V      +  A ++L+D+D    +F  
Sbjct: 181 AMTRYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIE 220


>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 341

 Score = 25.0 bits (54), Expect = 2.8
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 7/35 (20%)

Query: 35  YDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 69
           Y A  L+        AM G  +  + + R M +R+
Sbjct: 246 YFAERLFK-------AMKGLGTRDNTLIRIMVSRS 273


>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 343

 Score = 24.6 bits (53), Expect = 3.7
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 7/35 (20%)

Query: 35  YDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 69
           + A  L+        AM G  +    + R M +R+
Sbjct: 276 FFAEKLHQ-------AMKGIGTRHKTLIRIMVSRS 303


>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 318

 Score = 24.5 bits (53), Expect = 4.1
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 7/37 (18%)

Query: 35  YDAVILYSIALNETIAMGGSQSDGSAITRRMWNRTYQ 71
           Y A  LY        AM G+ +D   + R + +R+  
Sbjct: 247 YLAETLYY-------AMKGAGTDDHTLIRVIVSRSEI 276


>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase
           {Unidentified organism [TaxId: 32644]}
          Length = 303

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 8/42 (19%), Positives = 13/42 (30%)

Query: 77  VHIDANGDRLADYSLLDMDPDTSEFRRNENEELKSGVRGSID 118
           VHI  N  +  +         T     N  + L +G     +
Sbjct: 7   VHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRN 48


>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 243

 Score = 23.6 bits (50), Expect = 9.5
 Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 78  HIDANGDRLADYSLLDMDPDTSEF--RRNENEELKSGVRG 115
           H+  + +++    L+  DP   +      ++    +  R 
Sbjct: 5   HLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNRE 44


>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}
          Length = 315

 Score = 23.4 bits (50), Expect = 10.0
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)

Query: 34  FYDAVILYSIALNETIAMGGSQSDGSAITRRMWNRT 69
            Y A  L+        AM G  +    + R + +R+
Sbjct: 246 AYFAERLHH-------AMKGLGTSDKTLIRILVSRS 274


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,867
Number of extensions: 18993
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 21
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)