RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8579
(168 letters)
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8
subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 75.5 bits (186), Expect = 2e-19
Identities = 13/78 (16%), Positives = 35/78 (44%)
Query: 33 INYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVD 92
I+ + +G ++F+ + +++ NP++ + + + P + G E + ++
Sbjct: 7 IHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLN 66
Query: 93 NKSKDEIHDHVLKVLGKS 110
N S D++ + VL
Sbjct: 67 NFSADQVTRALENVLSGK 84
>d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 123
Score = 27.5 bits (61), Expect = 0.51
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 93 NKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPA 128
+ D I V + A A K D
Sbjct: 11 GAASDAIIAAVRAAERAFGVTVDYLATAPLKADEAG 46
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 26.0 bits (56), Expect = 1.8
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 64 QLQVFKNMTPTPFITTYLENGSEMLIDVD-NKSKDEIHDHVLKVLGK 109
+++V+++ T P + Y + L VD + DE+ L+ LGK
Sbjct: 140 RMKVYRDET-APLLEYY----RDQLKTVDAVGTMDEVFARALRALGK 181
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 25.7 bits (55), Expect = 3.0
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 66 QVFKNMTPTPFITTYLENGSEMLIDVD-NKSKDEIHDHVLKVLGK 109
+ T P + Y + G + VD ++ + +L LGK
Sbjct: 138 AAYHAQT-EPIVDFYKKTG--IWAGVDASQPPATVWADILNKLGK 179
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 25.3 bits (54), Expect = 3.6
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 89 IDVDNKSKDEIHDHVLKVL 107
++++NK+ DE+ + KV+
Sbjct: 142 LNIENKNIDELLSEIKKVI 160
>d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 179
Score = 25.2 bits (55), Expect = 3.7
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 40 ENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEI 99
+ F+ H + ++V + TP + ++ ++ +D
Sbjct: 71 KKITNNCVFIVIHRSTTSQT-----IKVSADDTPGTILQSFFTKMAKKKSLMDIPESQNE 125
Query: 100 HDHVLKVLGKSE 111
D VL+V G+ E
Sbjct: 126 RDFVLRVCGRDE 137
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 25.3 bits (54), Expect = 4.1
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 75 PFITTYLENGSEMLIDVD-NKSKDEIHDHVLKVLGKS 110
P + Y + G + +D +++ D + +L K+
Sbjct: 154 PLVEYYSKRG--IHSAIDASQTPDVVFASILAAFSKA 188
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 24.9 bits (53), Expect = 4.4
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 46 KEFVFWHFTQIQFKNPNVQ--LQVFKNMTPTPFITTYLENGSE---MLIDVD-NKSKDEI 99
+ + + V+ L + MT P I Y + VD K E+
Sbjct: 112 PDELIVDRIVKDDQEETVRKRLVEYHQMT-APLIGYYSKEAEAGNTKYAKVDGTKPVAEV 170
Query: 100 HDHVLKVLG 108
+ K+LG
Sbjct: 171 RADLEKILG 179
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.1 bits (53), Expect = 5.0
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 85 SEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAE 117
+++++D +S I ++ VL +S+ L+ +
Sbjct: 152 ADLVVDFSKQSVRSIVHEIILVL-ESQGFLERQ 183
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 24.1 bits (51), Expect = 8.0
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 85 SEMLIDVDNKSKDEIHDHVLKVLGKSEQVLK 115
E++ + + +E+ ++V ++L EQ +K
Sbjct: 139 EEIVHQLPSNKPEELENNVDQILKWIEQWIK 169
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Length = 350
Score = 24.4 bits (52), Expect = 8.5
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 23 VFKDKIKI-FAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
+KD I A+N + + F I +N
Sbjct: 5 AYKDNFLIGAALNATIASGADERLNTLIAKEFNSITPEN 43
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 24.2 bits (51), Expect = 8.6
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 89 IDVDNKSKDEIHDHVLKVL 107
+D + ++ + H+L L
Sbjct: 147 VDTNRRNPGAVVRHILSRL 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.425
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,611
Number of extensions: 29389
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 24
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)