BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy858
(72 letters)
Database: pdbaa
65,211 sequences; 15,674,573 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL E YS G RKL A AL+ +P L LDEPTSG+D ++ + +L Q +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 62 TGQSIVLTSH 71
G +I+++SH
Sbjct: 195 EGLTILVSSH 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + R+ SGG +++++ A AL +P L+F DEPT +D + R+ + +I
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 61 KTGQSIVLTSH 71
+ G SIV+ +H
Sbjct: 188 EGGTSIVMVTH 198
>pdb|4HUQ|A Chain A, Crystal Structure Of A Transporter
pdb|4HZU|B Chain B, Structure Of A Bacterial Energy-coupling Factor
Transporter
Length = 290
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
Y R SGG R+++ A L P ++ LDEPT+G+DP R + + +++ Q+ G
Sbjct: 138 YAERSPFELSGGQMRRVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGL 197
Query: 65 SIVLTSHR 72
+IVL +H+
Sbjct: 198 TIVLVTHQ 205
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + H SGG ++++ A AL +P ++ DEPTS +DP + +V+ Q+
Sbjct: 126 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 61 KTGQSIVLTSH 71
G ++V+ +H
Sbjct: 186 NEGMTMVVVTH 196
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K++L+ A L D + LDEP S +DP S+ ++ VL ++ G+ I+L +H
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + H SGG ++++ A AL +P ++ DEPTS +DP + +V+ Q+
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 61 KTGQSIVLTSH 71
G ++V+ +H
Sbjct: 207 NEGMTMVVVTH 217
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 9 RESGRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
R G+Y SGG ++++S A AL +P ++ DEPTS +DP + ++ Q+ + G+
Sbjct: 145 RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 204
Query: 65 SIVLTSH 71
++V+ +H
Sbjct: 205 TMVVVTH 211
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 7 RHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS 65
R GR +SGG K++LS A AL+ P ++ LD+ TS VDPI+ R+ L + K +
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 66 IVLT 69
++T
Sbjct: 532 FIIT 535
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ D P++ LDE TS +D S + A L ++QK S+V+ +HR
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHR 538
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ D P++ LDE TS +D S + A L ++QK S+V+ +HR
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHR 538
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ + + + S G K++++ A L+ +P ++ LDEPT+G+DP+ + +L ++QK
Sbjct: 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 62 T-GQSIVLTSH 71
G +I++ +H
Sbjct: 192 ELGITIIIATH 202
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ D P++ LDE TS +D S + A L ++QK +++++ +HR
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR 538
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GLTE +R+ SGG +++++ A++ P + +DEP S +D R R+ A L ++Q
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 61 KT-GQSIVLTSH 71
+ G + + +H
Sbjct: 187 RQLGVTTIYVTH 198
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L+ R++G SGG + + AL+ +P ++ +DEP +GV P H ++ + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 61 KTGQSIVLTSHR 72
G + ++ HR
Sbjct: 201 AKGITFLIIEHR 212
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG KR+++ A ++ +P ++ LDEP G+D + L ++ + + G++++L SH
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L+ R++G SGG + + AL+ +P ++ +DEP +GV P H ++ + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 61 KTGQSIVLTSHR 72
G + ++ HR
Sbjct: 201 AKGITFLIIEHR 212
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
+ + + + SGG +++++ A AL +PP++ DEPT +D + ++ +L ++ ++ G+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGK 197
Query: 65 SIVLTSH 71
++V+ +H
Sbjct: 198 TVVVVTH 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG KR+++ A ++ +P ++ LDEP G+D + L ++ + + G++++L SH
Sbjct: 142 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 198
>pdb|4HUQ|B Chain B, Crystal Structure Of A Transporter
pdb|4HZU|A Chain A, Structure Of A Bacterial Energy-coupling Factor
Transporter
Length = 279
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+G+T + RE SGG K++++ A + P ++ LDE TS +DP R + A++ Q+
Sbjct: 128 VGMTSFAQREPSSLSGGQKQRVALAGIVAIAPKILILDEATSMLDPQGRIEMLAIVRQLR 187
Query: 60 QKTGQSIVLTSH 71
Q+ +++ +H
Sbjct: 188 QQQNLTVISITH 199
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
SGG +++++ A AL+ DP L+ LDEP S +D R A++ ++Q + G ++++ SH
Sbjct: 142 SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
+ + + + SGG +++++ A AL +PP++ D+PT +D + ++ +L ++ ++ G+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK 197
Query: 65 SIVLTSH 71
++V+ +H
Sbjct: 198 TVVVVTH 204
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K G+++++ +HR
Sbjct: 143 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 199
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K G+++++ +HR
Sbjct: 143 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 199
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K G+++++ +HR
Sbjct: 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 197
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K G+++++ +HR
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 203
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L+ R++G SGG + + AL+ +P ++ +D+P +GV P H ++ + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 61 KTGQSIVLTSHR 72
G + ++ HR
Sbjct: 201 AKGITFLIIEHR 212
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSI 66
+R + SGG +++++ A AL+ +P ++ LDEP S +D + R + A L ++QK G +
Sbjct: 128 NRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 67 VLTSH 71
V +H
Sbjct: 188 VYVTH 192
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 43.1 bits (100), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQ 64
+ + + + SGG +++++ A AL +PP++ D+PT +D + ++ +L ++ ++ G+
Sbjct: 138 FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK 197
Query: 65 SIVLTSH 71
++V+ +H
Sbjct: 198 TVVVVTH 204
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
+ SGG K++++ A AL+ +P ++ LDE TS +D S + A L + + G++ ++ +H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 72 R 72
R
Sbjct: 584 R 584
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ P ++ LDE TS +D S + L + + G++ ++ +HR
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
+ SGG K++++ A AL+ +P ++ LDE TS +D S + A L + + G++ ++ +H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 72 R 72
R
Sbjct: 584 R 584
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ P ++ LDE TS +D S + L + + G++ ++ +HR
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHR 1229
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ D+ TS +D S H + + +I K G+++++ +HR
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHR 203
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL + SGG K++++ A AL +P ++ DE TS +DP + + +L I
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 60 QKTGQSIVLTSHR 72
++ G +I+L +H
Sbjct: 188 RRLGLTILLITHE 200
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
SG +++++ A AL+ DP L+ LDEP S +D R A++ ++Q + G ++++ SH
Sbjct: 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GLTE +R+ SGG +++++ A+I P + DEP S +D R + A L ++Q
Sbjct: 130 LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 61 KT-GQSIVLTSH 71
+ G + + +H
Sbjct: 190 RQLGVTTIYVTH 201
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ R+ R SGG +++++ A AL+ P L+ LDEP S VD ++ L L +Q
Sbjct: 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173
Query: 61 K 61
+
Sbjct: 174 R 174
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
SGG +++++ A AL+ +P ++ LDEP S +DP ++ +LS + K + VL
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L E + G SGG ++ L+ AL P L+ DEP+ G+ PI ++ V+ +I +
Sbjct: 129 LKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 63 GQSIVLTSH 71
G +I+L
Sbjct: 189 GTTILLVEQ 197
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ +P ++ LDE TS +D S + L + K G++ ++ +HR
Sbjct: 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHR 612
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ +P ++ LDE TS +D S + L + ++ G++ ++ +HR
Sbjct: 1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHR 1275
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL + SGG K++++ A AL +P ++ D+ TS +DP + + +L I
Sbjct: 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 60 QKTGQSIVLTSHR 72
++ G +I+L +H
Sbjct: 211 RRLGLTILLITHE 223
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL + SGG K++++ A AL +P ++ D+ TS +DP + + +L I
Sbjct: 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210
Query: 60 QKTGQSIVLTSH 71
++ G +I+L +H
Sbjct: 211 RRLGLTILLITH 222
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ +P ++ LDE TS +D + + + L ++ G+++++ +HR
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+ SGG K++LS A + +PP++ LDE TS +D S + L + K ++ ++ +HR
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-RTTLIVAHR 535
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+ LT RE SGG ++ + A A+ + L+ LDEPTS +D ++ + ++L +
Sbjct: 116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 60 QKTGQSIVLTSHR 72
Q ++V T+H+
Sbjct: 176 QSQNMTVVFTTHQ 188
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K G+++++ + R
Sbjct: 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAAR 197
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K G+++++ + R
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAAR 203
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+ SGG +++++ A L+ DP +V DE TS +D + + + ++K +++++ +HR
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHR 213
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
RE + SGG ++++ A AL+ F DEP+S +D R ++ V+ ++ G+++++
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 69 TSH 71
H
Sbjct: 270 VEH 272
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+G+ + R SGG ++++ A L+ D + LDEP++ +D
Sbjct: 445 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 489
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
RE + SGG ++++ A AL+ F DEP+S +D R ++ V+ ++ G+++++
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 69 TSH 71
H
Sbjct: 284 VEH 286
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+G+ + R SGG ++++ A L+ D + LDEP++ +D
Sbjct: 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR 49
+ SGG K+++ A+AL+ DP ++ LDEPTS +D +++
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQ 190
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K++++ A AL+ +P ++ LDE TS +D + + + L ++ G+++++ +H
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAH 571
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR 49
G S G K+++ A AL G P ++ LDEP +G+D I+R
Sbjct: 160 GYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIAR 197
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+ SGG +++L+ A A + +P ++ LDE T+ +D S + L + K G++ ++ +HR
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + E +R + SGG +++++ A A++ +P ++ +DEP S +D R A+ ++I+
Sbjct: 129 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR---VAMRAEIK 185
Query: 61 KTGQSIVLTS 70
K Q + +T+
Sbjct: 186 KLQQKLKVTT 195
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + E +R + SGG +++++ A A++ +P ++ +DEP S +D R A+ ++I+
Sbjct: 130 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR---VAMRAEIK 186
Query: 61 KTGQSIVLTS 70
K Q + +T+
Sbjct: 187 KLQQKLKVTT 196
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+ SGG K++++ A ++ P ++ LDE TS +D + + A L+++ +IV+ +HR
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV-AHR 248
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
RE SGG ++++ A AL+ + F DEP+S +D R + ++ + G+S+++
Sbjct: 154 REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213
Query: 69 TSH 71
H
Sbjct: 214 VEH 216
Score = 32.3 bits (72), Expect = 0.069, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+G+ + RE SGG ++++ A L+ D + LDEP++ +D
Sbjct: 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
M L Y +R SGG +++++ A AL P ++ DEP + +D R L + Q+
Sbjct: 133 MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192
Query: 61 -KTGQSIVLTSH 71
+ G + V +H
Sbjct: 193 DEMGVTSVFVTH 204
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|4JBW|A Chain A, Crystal Structure Of E. Coli Maltose Transporter Malfgk2
In Complex With Its Regulatory Protein Eiiaglc
pdb|4JBW|B Chain B, Crystal Structure Of E. Coli Maltose Transporter Malfgk2
In Complex With Its Regulatory Protein Eiiaglc
pdb|4JBW|C Chain C, Crystal Structure Of E. Coli Maltose Transporter Malfgk2
In Complex With Its Regulatory Protein Eiiaglc
pdb|4JBW|D Chain D, Crystal Structure Of E. Coli Maltose Transporter Malfgk2
In Complex With Its Regulatory Protein Eiiaglc
Length = 381
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R+ SGG +++++ L+ +P + LDEP S +D R ++ +S++
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 61 K-TGQSIVLTSH 71
K G++++ +H
Sbjct: 181 KRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R+ SGG +++++ L+ +P + LDEP S +D R ++ +S++
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 61 K-TGQSIVLTSH 71
K G++++ +H
Sbjct: 181 KRLGRTMIYVTH 192
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 21 KLSTAMALIGDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+L+ A ALIG+ + LDEPT +D R +L + +++ Q I++T HR
Sbjct: 294 RLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHR 346
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIV 67
R+ + SGG +++++ A AL+ P ++ DEP S +D R + A + +Q+ G + V
Sbjct: 129 RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188
Query: 68 LTSH 71
+H
Sbjct: 189 YVTH 192
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTG 63
E R+ + S G + T++AL P +V LDEP VD RH V+S+ I++ G
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH----VISRYIKEYG 175
Query: 64 QSIVLTSH 71
+ +L +H
Sbjct: 176 KEGILVTH 183
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 59 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 117
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 63 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R+ SGG +++++ L+ +P + LD+P S +D R ++ +S++
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLH 180
Query: 61 K-TGQSIVLTSH 71
K G++++ +H
Sbjct: 181 KRLGRTMIYVTH 192
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 89 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 147
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQ 60
G++E R SGG +++ + A AL DP L+ LDEP S +D R ++ +++ ++
Sbjct: 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186
Query: 61 KTGQSIVLTSH 71
G+S V SH
Sbjct: 187 ANGKSAVFVSH 197
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 94 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 152
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 274 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 332
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 254 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G ++ L+ A + +P ++ LDE TS VD + + A + ++ + G++ ++ +HR
Sbjct: 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHR 549
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
++ G S G R++ A L+ + + LD+P +D S+H++ + +I K + IV+
Sbjct: 129 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVI 187
Query: 69 TSHR 72
S R
Sbjct: 188 ISSR 191
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A ++ P L+ LD+P + +D + L
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALD 173
Query: 54 AVLSQIQKTGQSIVLTSH 71
+LS + + G +IV++SH
Sbjct: 174 KILSALSQQGLAIVMSSH 191
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A ++ P L+ LDEP + +D + L
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALD 173
Query: 54 AVLSQIQKTGQSIVLTSH 71
+LS + + G +IV +SH
Sbjct: 174 KILSALSQQGLAIVXSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A ++ P L+ LD+P +D + L
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALD 173
Query: 54 AVLSQIQKTGQSIVLTSH 71
+LS + + G +IV++SH
Sbjct: 174 KILSALSQQGLAIVMSSH 191
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A ++ P L+ LDEP + +D + L
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALD 173
Query: 54 AVLSQIQKTGQSIVLTSH 71
+LS + + G +IV +SH
Sbjct: 174 KILSALCQQGLAIVXSSH 191
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 10 ESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIV 67
E+G + SGG ++ ++ A ALI P L+ LD+ TS +D ++ R+ +L + + ++++
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVL 211
Query: 68 LTSHR 72
L +H+
Sbjct: 212 LITHQ 216
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K KL A P L+ LDEPT+ +D R L A+ +++ +++ +H
Sbjct: 897 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALKEFEGGVIIITH 950
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG K KL+ A A++ + ++ LDEPT+ +D ++
Sbjct: 544 SGGWKXKLALARAVLRNADILLLDEPTNHLDTVN 577
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K KL A P L+ LDEPT+ +D R L A+ +++ +++ +H
Sbjct: 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALKEFEGGVIIITH 956
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG K KL+ A A++ + ++ LDEPT+ +D ++
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K KL A P L+ LDEPT+ +D R L A+ +++ +++ +H
Sbjct: 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGALSKALKEFEGGVIIITH 956
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG K KL+ A A++ + ++ LDEPT+ +D ++
Sbjct: 550 SGGWKXKLALARAVLRNADILLLDEPTNHLDTVN 583
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 15 SGGNKR--KLSTAMALIGDPPLVF-LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG + KL+T + G V+ LDEPT+G+ P RL L ++ G +++ H
Sbjct: 732 SGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791
Query: 72 R 72
+
Sbjct: 792 K 792
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 10 ESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58
E+G + SGG ++ ++ A ALI P L+ LD TS +D ++ R+ +L +
Sbjct: 152 ETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 10 ESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
E+G + SGG ++ ++ A ALI P ++ LD+ TS +D S+ ++ +L
Sbjct: 150 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
+SGG K++ + +P L LDE SG+D + + ++ ++ +S ++ +H
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
+SGG K++ + +P L LDE SG+D + + ++ ++ +S ++ +H
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
>pdb|4FIN|A Chain A, Crystal Structure Of Etta (formerly Yjjk) - An E. Coli
Abc-type Atpase
pdb|4FIN|B Chain B, Crystal Structure Of Etta (formerly Yjjk) - An E. Coli
Abc-type Atpase
Length = 555
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG +R+++ L+ P + LDEPT+ +D
Sbjct: 164 SGGERRRVALCRLLLEKPDXLLLDEPTNHLD 194
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP-ISRHRLWAVL 56
SGG K+++S A A+ + + D+P S VD + +H V+
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58
S G+K+ + A +++ ++ LDEP++ +DP++ + L Q
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ +T ++++ SGG ++L A +L+ + + D+P+S +D R + + ++
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 61 KTGQSIVL 68
K IV+
Sbjct: 186 KNKYVIVV 193
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
SGG +KL A L + L LD+P+S +D R+ + + ++ + +++
Sbjct: 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 15 SGGNKRKLSTAMAL---IGDPPLVFLDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG +++ A L L LDEPT+G VD I+ RL VL ++ G ++++
Sbjct: 545 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA--RLLDVLHRLVDNGDTVLVI 602
Query: 70 SH 71
H
Sbjct: 603 EH 604
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 15 SGGNKRKLSTAMAL---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++ A L L LDEPT+G+ RL VL ++ G ++++ H
Sbjct: 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 906
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D ++ ++ + + ++ I++TS
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D ++ ++ + + ++ I++TS
Sbjct: 144 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D ++ ++ + + ++ I++TS
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 15 SGGNKRKLSTAMAL---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++ A L L LDEPT+G+ RL VL ++ G ++++ H
Sbjct: 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 906
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D ++ ++ + + ++ I++TS
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+SGG K++ L+ +P LDE SG+D
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D ++ ++ + + ++ I++TS
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D ++ ++ + + ++ I++TS
Sbjct: 131 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
R+ + SGG ++ + M+ + + + DEP+S +D R ++ + + ++
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 69 TSH 71
H
Sbjct: 277 VEH 279
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D + +++ + + ++ I++TS
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D + +++ + + ++ I++TS
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D + +++ + + ++ I++TS
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D + +++ + + ++ I++TS
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 217
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P +D + +++ + + ++ I++TS
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 15 SGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGG K + A+ I P LDE S +D + R +L + K Q IV+T
Sbjct: 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITH 280
Query: 71 HR 72
++
Sbjct: 281 NK 282
>pdb|4KEM|A Chain A, Crystal Structure Of A Tartrate Dehydratase From
Azospirillum, Target Efi-502395, With Bound Mg And A
Putative Acrylate Ion, Ordered Active Site
pdb|4KEM|B Chain B, Crystal Structure Of A Tartrate Dehydratase From
Azospirillum, Target Efi-502395, With Bound Mg And A
Putative Acrylate Ion, Ordered Active Site
Length = 390
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG 63
Y +GRY+ G + L+ P LDE +DP R+W L +K G
Sbjct: 48 YGFNSNGRYAAGGLLRERFIPRLMSAAPDSLLDETGENLDPF---RIWTRLMTNEKPG 102
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 15 SGGNKRKLSTAMALIG------DPPLVFLDEPTSGVD 45
SGG ++++ A L P +FLDEPTS +D
Sbjct: 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
Database: pdbaa
Posted date: Jul 29, 2013 4:35 PM
Number of letters in database: 15,674,573
Number of sequences in database: 65,211
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,286,061
Number of Sequences: 65211
Number of extensions: 74718
Number of successful extensions: 257
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 125
length of query: 72
length of database: 15,674,573
effective HSP length: 42
effective length of query: 30
effective length of database: 12,935,711
effective search space: 388071330
effective search space used: 388071330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)