Query psy858
Match_columns 72
No_of_seqs 125 out of 1777
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 22:26:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.9E-30 8.6E-35 158.5 8.4 72 1-72 124-195 (240)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6.6E-30 1.4E-34 160.6 8.9 72 1-72 127-198 (254)
3 COG1116 TauB ABC-type nitrate/ 100.0 2E-29 4.4E-34 157.5 8.6 72 1-72 118-190 (248)
4 COG1136 SalX ABC-type antimicr 100.0 9.6E-29 2.1E-33 153.3 8.9 72 1-72 129-202 (226)
5 COG1127 Ttg2A ABC-type transpo 100.0 3.8E-28 8.3E-33 151.5 7.7 72 1-72 132-205 (263)
6 TIGR00960 3a0501s02 Type II (G 99.9 1.7E-27 3.8E-32 145.8 9.2 72 1-72 126-197 (216)
7 COG1135 AbcC ABC-type metal io 99.9 1E-27 2.2E-32 153.8 7.7 72 1-72 129-201 (339)
8 cd03226 ABC_cobalt_CbiO_domain 99.9 3.5E-27 7.6E-32 143.6 9.4 72 1-72 114-185 (205)
9 cd03225 ABC_cobalt_CbiO_domain 99.9 3.3E-27 7.1E-32 144.0 9.2 72 1-72 122-193 (211)
10 TIGR01166 cbiO cobalt transpor 99.9 3.3E-27 7.1E-32 142.4 9.0 72 1-72 115-186 (190)
11 cd03235 ABC_Metallic_Cations A 99.9 4.3E-27 9.4E-32 143.8 9.1 72 1-72 120-191 (213)
12 COG1122 CbiO ABC-type cobalt t 99.9 1.2E-27 2.6E-32 149.4 6.7 72 1-72 126-198 (235)
13 cd03259 ABC_Carb_Solutes_like 99.9 3.6E-27 7.9E-32 144.1 8.7 72 1-72 118-190 (213)
14 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 4.7E-27 1E-31 143.9 8.8 72 1-72 128-200 (218)
15 COG1131 CcmA ABC-type multidru 99.9 4.1E-27 8.8E-32 150.6 8.8 72 1-72 124-196 (293)
16 TIGR01188 drrA daunorubicin re 99.9 4.9E-27 1.1E-31 150.3 9.1 72 1-72 112-183 (302)
17 TIGR02673 FtsE cell division A 99.9 6.3E-27 1.4E-31 143.0 9.0 72 1-72 125-196 (214)
18 COG1124 DppF ABC-type dipeptid 99.9 2.8E-27 6.1E-32 147.6 7.5 71 2-72 129-201 (252)
19 COG1125 OpuBA ABC-type proline 99.9 3.6E-27 7.8E-32 148.6 7.3 72 1-72 121-195 (309)
20 PRK13537 nodulation ABC transp 99.9 8.1E-27 1.8E-31 149.7 9.1 72 1-72 126-197 (306)
21 COG2884 FtsE Predicted ATPase 99.9 7.3E-27 1.6E-31 142.1 8.2 72 1-72 125-196 (223)
22 cd03261 ABC_Org_Solvent_Resist 99.9 9.4E-27 2E-31 144.1 8.9 72 1-72 124-196 (235)
23 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.1E-26 2.3E-31 142.7 9.0 72 1-72 119-191 (220)
24 cd03292 ABC_FtsE_transporter F 99.9 1.1E-26 2.4E-31 141.8 8.9 72 1-72 124-195 (214)
25 TIGR02211 LolD_lipo_ex lipopro 99.9 1.1E-26 2.5E-31 142.4 9.0 72 1-72 129-201 (221)
26 TIGR02314 ABC_MetN D-methionin 99.9 1.1E-26 2.4E-31 151.3 9.0 72 1-72 128-200 (343)
27 cd03219 ABC_Mj1267_LivG_branch 99.9 1.4E-26 3.1E-31 143.1 9.0 72 1-72 131-202 (236)
28 TIGR01288 nodI ATP-binding ABC 99.9 1.5E-26 3.2E-31 148.1 9.0 72 1-72 123-194 (303)
29 cd03301 ABC_MalK_N The N-termi 99.9 1.6E-26 3.5E-31 141.1 8.7 72 1-72 118-190 (213)
30 cd03265 ABC_DrrA DrrA is the A 99.9 1.7E-26 3.6E-31 141.9 8.6 72 1-72 119-191 (220)
31 PRK13536 nodulation factor exp 99.9 1.8E-26 4E-31 150.0 9.2 72 1-72 160-231 (340)
32 cd03268 ABC_BcrA_bacitracin_re 99.9 1.4E-26 3E-31 141.1 8.1 72 1-72 114-185 (208)
33 cd03262 ABC_HisP_GlnQ_permease 99.9 2.4E-26 5.1E-31 140.3 9.1 72 1-72 123-194 (213)
34 cd03256 ABC_PhnC_transporter A 99.9 2.2E-26 4.9E-31 142.5 9.0 72 1-72 132-204 (241)
35 cd03266 ABC_NatA_sodium_export 99.9 1.6E-26 3.5E-31 141.5 8.3 72 1-72 124-195 (218)
36 TIGR01184 ntrCD nitrate transp 99.9 2.1E-26 4.5E-31 142.6 8.8 72 1-72 102-174 (230)
37 PRK11629 lolD lipoprotein tran 99.9 2.6E-26 5.6E-31 142.1 9.1 72 1-72 133-205 (233)
38 TIGR03608 L_ocin_972_ABC putat 99.9 3.2E-26 7E-31 139.1 9.2 72 1-72 122-193 (206)
39 cd03297 ABC_ModC_molybdenum_tr 99.9 2.7E-26 5.8E-31 140.5 8.8 72 1-72 119-191 (214)
40 TIGR02315 ABC_phnC phosphonate 99.9 2.7E-26 5.8E-31 142.4 8.8 72 1-72 133-205 (243)
41 cd03296 ABC_CysA_sulfate_impor 99.9 2.4E-26 5.2E-31 142.7 8.6 72 1-72 124-196 (239)
42 PRK11650 ugpC glycerol-3-phosp 99.9 2.4E-26 5.1E-31 150.2 8.9 72 1-72 122-194 (356)
43 COG4555 NatA ABC-type Na+ tran 99.9 7.7E-27 1.7E-31 143.2 6.1 72 1-72 121-192 (245)
44 cd03218 ABC_YhbG The ABC trans 99.9 3.2E-26 6.9E-31 141.3 8.9 72 1-72 121-192 (232)
45 cd03269 ABC_putative_ATPase Th 99.9 3E-26 6.4E-31 139.8 8.6 72 1-72 116-187 (210)
46 TIGR01189 ccmA heme ABC export 99.9 3.7E-26 8.1E-31 138.6 8.9 72 1-72 115-186 (198)
47 PRK13538 cytochrome c biogenes 99.9 3.6E-26 7.9E-31 139.2 8.8 72 1-72 117-188 (204)
48 cd03231 ABC_CcmA_heme_exporter 99.9 4.5E-26 9.8E-31 138.7 9.2 72 1-72 113-184 (201)
49 PRK11264 putative amino-acid A 99.9 4.4E-26 9.6E-31 142.0 9.3 72 1-72 132-203 (250)
50 COG1120 FepC ABC-type cobalami 99.9 2.8E-26 6E-31 144.6 8.4 72 1-72 126-198 (258)
51 PRK10908 cell division protein 99.9 4.6E-26 1E-30 140.0 9.2 72 1-72 125-196 (222)
52 PRK10584 putative ABC transpor 99.9 4.1E-26 8.9E-31 140.6 9.0 72 1-72 134-206 (228)
53 cd03298 ABC_ThiQ_thiamine_tran 99.9 4.2E-26 9.1E-31 139.2 8.9 72 1-72 116-188 (211)
54 TIGR03258 PhnT 2-aminoethylpho 99.9 3.6E-26 7.7E-31 149.7 9.0 72 1-72 125-198 (362)
55 PRK13638 cbiO cobalt transport 99.9 5.1E-26 1.1E-30 143.6 9.2 72 1-72 124-195 (271)
56 PRK13651 cobalt transporter AT 99.9 5.2E-26 1.1E-30 146.1 9.3 72 1-72 152-224 (305)
57 PRK13647 cbiO cobalt transport 99.9 5.4E-26 1.2E-30 143.9 9.3 72 1-72 126-197 (274)
58 PRK13539 cytochrome c biogenes 99.9 5.4E-26 1.2E-30 138.8 8.9 72 1-72 115-186 (207)
59 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5.4E-26 1.2E-30 143.5 9.1 72 1-72 148-220 (269)
60 cd03214 ABC_Iron-Siderophores_ 99.9 6.9E-26 1.5E-30 135.9 9.1 72 1-72 85-157 (180)
61 cd03258 ABC_MetN_methionine_tr 99.9 5.4E-26 1.2E-30 140.4 8.9 72 1-72 128-200 (233)
62 TIGR01186 proV glycine betaine 99.9 4.9E-26 1.1E-30 149.2 9.1 72 1-72 117-189 (363)
63 PRK13637 cbiO cobalt transport 99.9 6.9E-26 1.5E-30 144.2 9.5 72 1-72 130-204 (287)
64 PRK11153 metN DL-methionine tr 99.9 5.5E-26 1.2E-30 147.8 9.1 72 1-72 128-200 (343)
65 PRK11831 putative ABC transpor 99.9 5.8E-26 1.3E-30 143.3 9.0 72 1-72 131-203 (269)
66 PRK13641 cbiO cobalt transport 99.9 7.9E-26 1.7E-30 143.9 9.6 72 1-72 132-204 (287)
67 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 7.4E-26 1.6E-30 139.8 9.1 72 1-72 130-201 (224)
68 PRK09493 glnQ glutamine ABC tr 99.9 7E-26 1.5E-30 140.6 9.0 72 1-72 124-195 (240)
69 cd03257 ABC_NikE_OppD_transpor 99.9 7.2E-26 1.6E-30 139.2 8.9 71 2-72 133-205 (228)
70 PRK11300 livG leucine/isoleuci 99.9 6.4E-26 1.4E-30 141.6 8.8 72 1-72 141-213 (255)
71 PRK13650 cbiO cobalt transport 99.9 7.3E-26 1.6E-30 143.6 9.2 72 1-72 128-200 (279)
72 PRK11124 artP arginine transpo 99.9 7.7E-26 1.7E-30 140.5 9.1 72 1-72 129-200 (242)
73 PRK13644 cbiO cobalt transport 99.9 8.6E-26 1.9E-30 143.0 9.3 72 1-72 124-195 (274)
74 TIGR03771 anch_rpt_ABC anchore 99.9 8.9E-26 1.9E-30 139.2 9.1 72 1-72 101-172 (223)
75 PRK11231 fecE iron-dicitrate t 99.9 8.7E-26 1.9E-30 141.3 9.1 72 1-72 126-197 (255)
76 PRK11432 fbpC ferric transport 99.9 7.2E-26 1.6E-30 147.8 9.0 72 1-72 124-196 (351)
77 PRK11000 maltose/maltodextrin 99.9 7E-26 1.5E-30 148.5 9.0 72 1-72 121-193 (369)
78 PRK15079 oligopeptide ABC tran 99.9 8.7E-26 1.9E-30 146.4 9.1 72 1-72 148-221 (331)
79 PRK10851 sulfate/thiosulfate t 99.9 1E-25 2.2E-30 147.1 9.2 72 1-72 124-196 (353)
80 cd03264 ABC_drug_resistance_li 99.9 8.1E-26 1.8E-30 138.0 8.3 71 1-72 118-188 (211)
81 PRK11247 ssuB aliphatic sulfon 99.9 1.1E-25 2.5E-30 141.6 9.1 72 1-72 121-193 (257)
82 TIGR01187 potA spermidine/putr 99.9 1.1E-25 2.4E-30 145.5 9.2 72 1-72 88-160 (325)
83 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.2E-25 2.7E-30 139.3 9.1 72 1-72 120-192 (236)
84 PRK09536 btuD corrinoid ABC tr 99.9 1.2E-25 2.6E-30 148.9 9.4 72 1-72 127-198 (402)
85 PRK11248 tauB taurine transpor 99.9 1.2E-25 2.5E-30 141.2 9.0 72 1-72 116-188 (255)
86 PRK13643 cbiO cobalt transport 99.9 1.4E-25 2.9E-30 143.0 9.4 72 1-72 131-203 (288)
87 TIGR02142 modC_ABC molybdenum 99.9 1.1E-25 2.3E-30 146.8 9.1 72 1-72 119-191 (354)
88 COG0444 DppD ABC-type dipeptid 99.9 7.6E-26 1.6E-30 145.4 8.2 67 6-72 146-213 (316)
89 PRK15056 manganese/iron transp 99.9 1.5E-25 3.3E-30 141.6 9.4 72 1-72 130-201 (272)
90 TIGR03265 PhnT2 putative 2-ami 99.9 1E-25 2.2E-30 147.1 8.9 72 1-72 122-194 (353)
91 PRK11144 modC molybdate transp 99.9 1.3E-25 2.9E-30 146.4 9.3 72 1-72 116-188 (352)
92 PRK13634 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 142.7 9.4 72 1-72 132-205 (290)
93 COG1117 PstB ABC-type phosphat 99.9 8.8E-26 1.9E-30 139.4 7.9 67 5-72 141-207 (253)
94 TIGR03740 galliderm_ABC gallid 99.9 1.1E-25 2.4E-30 138.4 8.4 72 1-72 112-183 (223)
95 COG4175 ProV ABC-type proline/ 99.9 6.2E-26 1.3E-30 146.3 7.5 72 1-72 152-224 (386)
96 PRK11308 dppF dipeptide transp 99.9 1.6E-25 3.5E-30 144.9 9.5 72 1-72 141-214 (327)
97 TIGR01277 thiQ thiamine ABC tr 99.9 1.6E-25 3.4E-30 137.1 8.9 72 1-72 116-188 (213)
98 PRK15093 antimicrobial peptide 99.9 1.5E-25 3.3E-30 145.1 9.3 72 1-72 143-218 (330)
99 PRK10070 glycine betaine trans 99.9 1.5E-25 3.2E-30 148.4 9.4 72 1-72 152-224 (400)
100 PRK10771 thiQ thiamine transpo 99.9 1.5E-25 3.3E-30 138.6 8.8 72 1-72 117-189 (232)
101 cd03260 ABC_PstB_phosphate_tra 99.9 2E-25 4.2E-30 137.5 9.3 71 1-72 127-199 (227)
102 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.4E-25 2.9E-30 140.6 8.7 72 1-72 103-175 (246)
103 PRK10938 putative molybdenum t 99.9 1.3E-25 2.8E-30 150.7 9.1 72 1-72 123-194 (490)
104 PRK09452 potA putrescine/sperm 99.9 1.4E-25 3E-30 147.5 9.0 72 1-72 132-204 (375)
105 cd03224 ABC_TM1139_LivF_branch 99.9 1.3E-25 2.9E-30 137.7 8.4 70 3-72 122-191 (222)
106 PRK09700 D-allose transporter 99.9 1.6E-25 3.4E-30 150.9 9.4 72 1-72 133-204 (510)
107 PRK10619 histidine/lysine/argi 99.9 2.3E-25 5E-30 139.6 9.5 72 1-72 139-211 (257)
108 PRK13540 cytochrome c biogenes 99.9 2.4E-25 5.1E-30 135.3 9.2 71 2-72 116-186 (200)
109 PRK13649 cbiO cobalt transport 99.9 2.2E-25 4.8E-30 141.1 9.4 72 1-72 132-204 (280)
110 TIGR02324 CP_lyasePhnL phospho 99.9 2.6E-25 5.6E-30 136.8 9.4 72 1-72 136-208 (224)
111 PRK13631 cbiO cobalt transport 99.9 2.3E-25 5E-30 143.9 9.6 72 1-72 163-235 (320)
112 COG4598 HisP ABC-type histidin 99.9 1.4E-25 3E-30 136.5 8.1 72 1-72 140-211 (256)
113 PRK11022 dppD dipeptide transp 99.9 1.8E-25 4E-30 144.6 9.2 67 6-72 146-213 (326)
114 PRK13635 cbiO cobalt transport 99.9 2.1E-25 4.7E-30 141.5 9.3 72 1-72 128-200 (279)
115 PRK13639 cbiO cobalt transport 99.9 2.3E-25 5E-30 141.0 9.4 72 1-72 125-196 (275)
116 COG3839 MalK ABC-type sugar tr 99.9 6.8E-26 1.5E-30 147.2 7.0 72 1-72 121-193 (338)
117 PRK13636 cbiO cobalt transport 99.9 2.2E-25 4.8E-30 141.6 9.2 72 1-72 129-201 (283)
118 PRK13633 cobalt transporter AT 99.9 2.1E-25 4.6E-30 141.5 9.1 72 1-72 132-204 (280)
119 TIGR01978 sufC FeS assembly AT 99.9 2.8E-25 6.2E-30 137.7 9.4 71 2-72 131-203 (243)
120 PRK10575 iron-hydroxamate tran 99.9 2.2E-25 4.8E-30 140.3 9.0 72 1-72 135-207 (265)
121 PRK09700 D-allose transporter 99.9 1.9E-25 4.1E-30 150.5 9.3 72 1-72 396-468 (510)
122 PRK13646 cbiO cobalt transport 99.9 2.5E-25 5.4E-30 141.6 9.3 72 1-72 132-205 (286)
123 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2E-25 4.4E-30 138.7 8.7 72 1-72 121-195 (242)
124 PRK10895 lipopolysaccharide AB 99.9 2.1E-25 4.5E-30 138.5 8.7 72 1-72 125-196 (241)
125 PRK13543 cytochrome c biogenes 99.9 2.6E-25 5.7E-30 136.4 9.1 72 1-72 125-196 (214)
126 TIGR02770 nickel_nikD nickel i 99.9 2.3E-25 5E-30 137.7 8.8 68 5-72 117-185 (230)
127 TIGR03411 urea_trans_UrtD urea 99.9 2.5E-25 5.5E-30 138.1 9.0 71 1-72 131-201 (242)
128 cd03267 ABC_NatA_like Similar 99.9 2.5E-25 5.3E-30 138.2 8.8 72 1-72 141-213 (236)
129 PRK09984 phosphonate/organopho 99.9 2.3E-25 5E-30 139.9 8.7 72 1-72 140-212 (262)
130 TIGR03269 met_CoM_red_A2 methy 99.9 2.4E-25 5.1E-30 150.3 9.2 72 1-72 156-228 (520)
131 TIGR03522 GldA_ABC_ATP gliding 99.9 2E-25 4.4E-30 142.9 8.4 71 1-72 121-191 (301)
132 PRK13549 xylose transporter AT 99.9 2.4E-25 5.2E-30 150.0 9.0 72 1-72 392-464 (506)
133 PRK11288 araG L-arabinose tran 99.9 2.7E-25 5.8E-30 149.6 9.2 72 1-72 383-455 (501)
134 PRK09544 znuC high-affinity zi 99.9 2.9E-25 6.3E-30 139.3 8.8 72 1-72 108-180 (251)
135 PRK15439 autoinducer 2 ABC tra 99.9 3.1E-25 6.6E-30 149.8 9.4 72 1-72 128-199 (510)
136 PRK10762 D-ribose transporter 99.9 2.7E-25 5.9E-30 149.6 9.2 72 1-72 129-200 (501)
137 PRK13652 cbiO cobalt transport 99.9 3.9E-25 8.4E-30 140.1 9.3 72 1-72 125-197 (277)
138 PRK13549 xylose transporter AT 99.9 2.9E-25 6.3E-30 149.6 9.2 72 1-72 131-202 (506)
139 PRK13645 cbiO cobalt transport 99.9 3.2E-25 7E-30 141.0 9.0 72 1-72 137-210 (289)
140 PRK10253 iron-enterobactin tra 99.9 3.4E-25 7.3E-30 139.5 9.0 72 1-72 131-203 (265)
141 TIGR02769 nickel_nikE nickel i 99.9 3.6E-25 7.8E-30 139.4 9.0 72 1-72 137-210 (265)
142 PRK14250 phosphate ABC transpo 99.9 4.5E-25 9.7E-30 137.3 9.3 72 1-72 118-191 (241)
143 PRK11701 phnK phosphonate C-P 99.9 4.3E-25 9.3E-30 138.4 9.2 72 1-72 138-211 (258)
144 TIGR03873 F420-0_ABC_ATP propo 99.9 4.3E-25 9.3E-30 138.3 9.1 72 1-72 125-196 (256)
145 PRK11607 potG putrescine trans 99.9 3.5E-25 7.5E-30 145.7 9.1 72 1-72 137-209 (377)
146 TIGR03415 ABC_choXWV_ATP choli 99.9 3.7E-25 7.9E-30 145.8 9.2 72 1-72 152-224 (382)
147 PRK15439 autoinducer 2 ABC tra 99.9 2.9E-25 6.3E-30 149.9 8.8 72 1-72 390-462 (510)
148 TIGR02323 CP_lyasePhnK phospho 99.9 4.4E-25 9.6E-30 137.8 9.0 72 1-72 135-208 (253)
149 TIGR03005 ectoine_ehuA ectoine 99.9 4.1E-25 8.9E-30 138.0 8.8 72 1-72 134-206 (252)
150 PRK13541 cytochrome c biogenes 99.9 4.7E-25 1E-29 133.6 8.8 72 1-72 111-182 (195)
151 TIGR00972 3a0107s01c2 phosphat 99.9 5.5E-25 1.2E-29 137.1 9.3 67 5-72 136-202 (247)
152 PRK11614 livF leucine/isoleuci 99.9 2.6E-25 5.7E-30 137.8 7.8 70 3-72 127-196 (237)
153 PRK13642 cbiO cobalt transport 99.9 5.1E-25 1.1E-29 139.5 9.2 72 1-72 128-200 (277)
154 cd03263 ABC_subfamily_A The AB 99.9 3.8E-25 8.3E-30 135.6 8.3 71 1-72 121-191 (220)
155 PRK09580 sufC cysteine desulfu 99.9 6.9E-25 1.5E-29 136.4 9.5 67 6-72 137-204 (248)
156 cd03234 ABCG_White The White s 99.9 6.1E-25 1.3E-29 135.5 9.2 71 2-72 132-202 (226)
157 cd03252 ABCC_Hemolysin The ABC 99.9 4.6E-25 1E-29 136.6 8.7 69 3-72 128-196 (237)
158 PRK13632 cbiO cobalt transport 99.9 5.3E-25 1.1E-29 139.1 9.1 72 1-72 130-202 (271)
159 PRK13548 hmuV hemin importer A 99.9 6.1E-25 1.3E-29 138.0 9.2 72 1-72 122-200 (258)
160 PRK13640 cbiO cobalt transport 99.9 5.9E-25 1.3E-29 139.6 9.2 72 1-72 131-203 (282)
161 PRK09473 oppD oligopeptide tra 99.9 6E-25 1.3E-29 142.4 9.3 67 6-72 154-221 (330)
162 PRK10982 galactose/methyl gala 99.9 5E-25 1.1E-29 148.0 9.3 72 1-72 122-193 (491)
163 PRK11288 araG L-arabinose tran 99.9 5.3E-25 1.1E-29 148.2 9.2 72 1-72 128-199 (501)
164 PRK13648 cbiO cobalt transport 99.9 7.9E-25 1.7E-29 138.0 9.4 72 1-72 130-202 (269)
165 PRK15112 antimicrobial peptide 99.9 5.8E-25 1.3E-29 138.6 8.7 72 1-72 136-209 (267)
166 PRK10762 D-ribose transporter 99.9 5.7E-25 1.2E-29 148.0 9.1 72 1-72 382-454 (501)
167 CHL00131 ycf16 sulfate ABC tra 99.9 9.8E-25 2.1E-29 136.1 9.4 71 2-72 138-210 (252)
168 cd03238 ABC_UvrA The excision 99.9 1.4E-24 3E-29 130.8 9.7 71 2-72 75-148 (176)
169 COG3840 ThiQ ABC-type thiamine 99.9 4.2E-25 9.2E-30 134.1 7.4 72 1-72 117-189 (231)
170 TIGR02633 xylG D-xylose ABC tr 99.9 6.7E-25 1.5E-29 147.5 9.1 72 1-72 390-462 (500)
171 PRK10418 nikD nickel transport 99.9 1E-24 2.3E-29 136.5 9.4 67 6-72 133-200 (254)
172 PRK15134 microcin C ABC transp 99.9 7.3E-25 1.6E-29 148.3 9.2 72 1-72 412-485 (529)
173 PRK15134 microcin C ABC transp 99.9 6.8E-25 1.5E-29 148.4 9.1 67 6-72 149-216 (529)
174 COG3638 ABC-type phosphate/pho 99.9 2.6E-25 5.6E-30 138.6 6.4 72 1-72 135-207 (258)
175 COG1123 ATPase components of v 99.9 5.8E-25 1.3E-29 149.0 8.5 71 2-72 141-214 (539)
176 PRK10982 galactose/methyl gala 99.9 6.8E-25 1.5E-29 147.3 8.8 71 2-72 379-450 (491)
177 cd03300 ABC_PotA_N PotA is an 99.9 1.1E-24 2.4E-29 134.8 9.1 72 1-72 118-190 (232)
178 TIGR02982 heterocyst_DevA ABC 99.9 9.2E-25 2E-29 134.2 8.6 72 1-72 129-201 (220)
179 TIGR03410 urea_trans_UrtE urea 99.9 7.5E-25 1.6E-29 135.1 8.3 69 4-72 122-191 (230)
180 PRK10261 glutathione transport 99.9 8.6E-25 1.9E-29 150.5 9.3 72 1-72 450-523 (623)
181 TIGR02633 xylG D-xylose ABC tr 99.9 9.2E-25 2E-29 146.8 9.2 71 2-72 129-200 (500)
182 cd03299 ABC_ModC_like Archeal 99.9 1.1E-24 2.5E-29 135.1 8.9 72 1-72 117-189 (235)
183 cd03270 ABC_UvrA_I The excisio 99.9 1.9E-24 4.1E-29 133.9 9.7 72 1-72 124-198 (226)
184 PRK03695 vitamin B12-transport 99.9 1.4E-24 3.1E-29 135.7 9.2 72 1-72 114-192 (248)
185 cd03248 ABCC_TAP TAP, the Tran 99.9 1.4E-24 3.1E-29 133.6 8.9 70 2-72 139-208 (226)
186 PRK13409 putative ATPase RIL; 99.9 1.1E-24 2.5E-29 149.4 9.1 72 1-72 441-513 (590)
187 cd03245 ABCC_bacteriocin_expor 99.9 9.3E-25 2E-29 133.9 7.8 62 10-72 137-198 (220)
188 PRK14268 phosphate ABC transpo 99.9 1.7E-24 3.6E-29 135.8 9.1 67 5-72 146-212 (258)
189 PRK10247 putative ABC transpor 99.9 1.8E-24 3.9E-29 133.5 9.1 72 1-72 124-197 (225)
190 PRK10261 glutathione transport 99.9 1.2E-24 2.7E-29 149.7 9.1 67 6-72 161-228 (623)
191 COG1137 YhbG ABC-type (unclass 99.9 7.9E-25 1.7E-29 134.3 7.3 72 1-72 127-198 (243)
192 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-24 2.7E-29 146.8 9.0 67 6-72 420-487 (520)
193 cd03254 ABCC_Glucan_exporter_l 99.9 1.8E-24 3.8E-29 133.3 8.7 69 3-72 129-197 (229)
194 COG1118 CysA ABC-type sulfate/ 99.9 9.4E-25 2E-29 140.2 7.6 71 2-72 126-197 (345)
195 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.9E-24 4.2E-29 133.9 8.8 68 4-72 130-197 (238)
196 cd03251 ABCC_MsbA MsbA is an e 99.9 1.8E-24 3.9E-29 133.6 8.7 70 2-72 127-196 (234)
197 PRK14242 phosphate transporter 99.9 2.2E-24 4.8E-29 134.7 9.0 66 6-72 142-207 (253)
198 cd03253 ABCC_ATM1_transporter 99.9 2E-24 4.4E-29 133.5 8.7 68 4-72 128-195 (236)
199 PRK14273 phosphate ABC transpo 99.9 2.3E-24 4.9E-29 134.8 8.9 67 5-72 142-208 (254)
200 PRK10938 putative molybdenum t 99.9 1.5E-24 3.3E-29 145.5 8.5 72 1-72 388-461 (490)
201 PRK13546 teichoic acids export 99.9 3.2E-24 6.9E-29 135.6 9.3 71 2-72 132-202 (264)
202 PRK14245 phosphate ABC transpo 99.9 2.5E-24 5.5E-29 134.3 8.8 67 5-72 138-204 (250)
203 PRK14259 phosphate ABC transpo 99.9 2.7E-24 5.9E-29 135.8 8.7 68 4-72 145-212 (269)
204 PRK13547 hmuV hemin importer A 99.9 3.5E-24 7.7E-29 135.8 9.0 72 1-72 133-214 (272)
205 PRK14247 phosphate ABC transpo 99.9 3.2E-24 6.9E-29 133.8 8.7 66 6-72 139-204 (250)
206 cd03246 ABCC_Protease_Secretio 99.9 4.1E-24 9E-29 127.6 8.7 59 14-72 97-155 (173)
207 TIGR00968 3a0106s01 sulfate AB 99.9 4E-24 8.7E-29 132.8 8.8 72 1-72 118-190 (237)
208 cd03236 ABC_RNaseL_inhibitor_d 99.9 4.9E-24 1.1E-28 134.2 9.2 72 1-72 127-198 (255)
209 COG1123 ATPase components of v 99.9 2.1E-24 4.7E-29 146.2 8.0 71 2-72 417-489 (539)
210 PRK10419 nikE nickel transport 99.9 5.3E-24 1.1E-28 134.4 9.3 71 2-72 139-211 (268)
211 cd03216 ABC_Carb_Monos_I This 99.9 5.7E-24 1.2E-28 126.2 8.9 60 13-72 82-141 (163)
212 COG3842 PotA ABC-type spermidi 99.9 8.8E-25 1.9E-29 142.6 5.8 72 1-72 124-196 (352)
213 PRK14248 phosphate ABC transpo 99.9 4E-24 8.6E-29 134.7 8.6 67 5-72 156-222 (268)
214 PRK14249 phosphate ABC transpo 99.9 5.2E-24 1.1E-28 133.0 8.9 67 5-72 139-205 (251)
215 cd03290 ABCC_SUR1_N The SUR do 99.9 5.9E-24 1.3E-28 130.4 9.0 66 7-72 134-201 (218)
216 PRK14235 phosphate transporter 99.9 6.3E-24 1.4E-28 133.9 9.3 66 6-72 156-221 (267)
217 PRK10744 pstB phosphate transp 99.9 4.4E-24 9.5E-29 134.0 8.5 67 5-72 148-214 (260)
218 PRK13545 tagH teichoic acids e 99.9 4.8E-24 1.1E-28 144.8 9.3 72 1-72 131-202 (549)
219 PRK14240 phosphate transporter 99.9 4.5E-24 9.7E-29 133.1 8.5 67 5-72 138-204 (250)
220 PRK14244 phosphate ABC transpo 99.9 5.9E-24 1.3E-28 132.7 8.9 66 6-72 142-207 (251)
221 PRK14241 phosphate transporter 99.9 6.7E-24 1.4E-28 133.0 9.0 67 5-72 140-206 (258)
222 PRK14269 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 132.1 8.9 66 6-72 135-200 (246)
223 PRK14267 phosphate ABC transpo 99.9 6.3E-24 1.4E-28 132.6 8.5 67 5-72 141-207 (253)
224 PRK14239 phosphate transporter 99.9 6.3E-24 1.4E-28 132.5 8.4 67 5-72 140-206 (252)
225 PRK14265 phosphate ABC transpo 99.9 6.5E-24 1.4E-28 134.4 8.5 67 5-72 153-219 (274)
226 cd03244 ABCC_MRP_domain2 Domai 99.9 9.9E-24 2.1E-28 129.4 8.8 69 3-72 129-197 (221)
227 PRK14270 phosphate ABC transpo 99.9 9.6E-24 2.1E-28 131.8 8.8 67 5-72 139-205 (251)
228 PRK14272 phosphate ABC transpo 99.9 8.9E-24 1.9E-28 131.8 8.6 67 5-72 140-206 (252)
229 cd03230 ABC_DR_subfamily_A Thi 99.9 1.1E-23 2.4E-28 125.7 8.7 59 14-72 96-154 (173)
230 PRK14258 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 132.4 9.0 68 5-72 142-210 (261)
231 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.3E-23 2.8E-28 127.9 9.0 63 10-72 101-163 (200)
232 cd03215 ABC_Carb_Monos_II This 99.9 1.1E-23 2.3E-28 126.6 8.5 59 14-72 105-163 (182)
233 PRK14255 phosphate ABC transpo 99.9 1.2E-23 2.5E-28 131.4 8.9 67 5-72 140-206 (252)
234 PRK14254 phosphate ABC transpo 99.9 9.2E-24 2E-28 134.5 8.5 67 5-72 172-238 (285)
235 cd03229 ABC_Class3 This class 99.9 1.3E-23 2.9E-28 125.8 8.7 59 14-72 101-160 (178)
236 PRK14238 phosphate transporter 99.9 1E-23 2.2E-28 133.3 8.5 67 5-72 159-225 (271)
237 cd03250 ABCC_MRP_domain1 Domai 99.9 1.4E-23 3E-28 127.7 8.8 68 5-72 119-187 (204)
238 PRK14251 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 131.4 8.6 67 5-72 139-205 (251)
239 COG4181 Predicted ABC-type tra 99.9 1.2E-23 2.6E-28 127.1 8.0 72 1-72 134-206 (228)
240 PRK13409 putative ATPase RIL; 99.9 1.2E-23 2.7E-28 144.3 9.1 71 1-72 200-270 (590)
241 PRK14262 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 131.0 8.3 66 6-72 139-204 (250)
242 PRK14253 phosphate ABC transpo 99.9 1.6E-23 3.4E-28 130.6 8.7 67 5-72 137-203 (249)
243 cd03232 ABC_PDR_domain2 The pl 99.9 1.9E-23 4.1E-28 126.5 8.8 60 13-72 108-167 (192)
244 PRK14274 phosphate ABC transpo 99.9 1.8E-23 3.9E-28 131.1 9.0 66 6-72 148-213 (259)
245 PRK14243 phosphate transporter 99.9 1.3E-23 2.9E-28 132.3 8.4 66 6-72 144-209 (264)
246 PRK14260 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 131.6 8.5 67 5-72 142-208 (259)
247 PRK14275 phosphate ABC transpo 99.9 1.5E-23 3.3E-28 133.5 8.5 67 5-72 174-240 (286)
248 cd03213 ABCG_EPDR ABCG transpo 99.9 2.4E-23 5.3E-28 126.3 8.9 60 13-72 111-170 (194)
249 PRK14256 phosphate ABC transpo 99.9 1.9E-23 4.1E-28 130.5 8.5 66 6-72 141-206 (252)
250 PRK14236 phosphate transporter 99.9 2.1E-23 4.6E-28 131.8 8.7 66 6-72 161-226 (272)
251 COG4161 ArtP ABC-type arginine 99.9 1.5E-23 3.3E-28 126.2 7.4 71 2-72 130-200 (242)
252 cd03271 ABC_UvrA_II The excisi 99.9 3.7E-23 8.1E-28 130.8 9.6 72 1-72 156-231 (261)
253 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.1E-23 6.8E-28 126.4 8.7 64 8-72 120-183 (207)
254 PRK14266 phosphate ABC transpo 99.9 2.6E-23 5.6E-28 129.7 8.4 66 6-72 139-204 (250)
255 cd03247 ABCC_cytochrome_bd The 99.9 2.9E-23 6.3E-28 124.3 8.3 61 11-72 96-156 (178)
256 PRK14261 phosphate ABC transpo 99.9 2.5E-23 5.5E-28 130.0 8.3 66 6-72 142-207 (253)
257 PRK14264 phosphate ABC transpo 99.9 2.8E-23 6.1E-28 133.3 8.6 67 5-72 192-258 (305)
258 TIGR01257 rim_protein retinal- 99.9 2.3E-23 5E-28 155.9 9.0 72 1-72 2058-2129(2272)
259 PRK14237 phosphate transporter 99.9 4.5E-23 9.8E-28 130.0 9.0 67 5-72 155-221 (267)
260 COG4172 ABC-type uncharacteriz 99.9 1.8E-23 3.9E-28 138.5 7.3 72 1-72 413-486 (534)
261 COG0411 LivG ABC-type branched 99.9 5.8E-23 1.3E-27 128.3 8.9 72 1-72 137-209 (250)
262 cd03223 ABCD_peroxisomal_ALDP 99.9 6.6E-23 1.4E-27 121.9 8.7 60 10-72 88-147 (166)
263 COG4525 TauB ABC-type taurine 99.9 1.8E-23 4E-28 128.3 6.3 72 1-72 120-192 (259)
264 PRK14271 phosphate ABC transpo 99.9 6.9E-23 1.5E-27 129.9 9.2 66 6-72 156-221 (276)
265 PRK14263 phosphate ABC transpo 99.9 5.2E-23 1.1E-27 129.6 8.5 66 6-72 142-207 (261)
266 PLN03211 ABC transporter G-25; 99.9 5E-23 1.1E-27 142.7 9.0 71 2-72 190-265 (659)
267 cd03228 ABCC_MRP_Like The MRP 99.9 5.8E-23 1.3E-27 122.4 8.1 58 14-72 97-154 (171)
268 PRK14246 phosphate ABC transpo 99.9 7.8E-23 1.7E-27 128.5 9.1 66 6-72 146-211 (257)
269 PRK14257 phosphate ABC transpo 99.9 5.9E-23 1.3E-27 133.2 8.7 67 5-72 217-283 (329)
270 PRK14252 phosphate ABC transpo 99.9 6.7E-23 1.4E-27 129.0 8.7 67 5-72 153-219 (265)
271 COG4148 ModC ABC-type molybdat 99.9 1.7E-23 3.7E-28 133.6 5.9 72 1-72 116-188 (352)
272 TIGR01257 rim_protein retinal- 99.9 5.2E-23 1.1E-27 154.0 9.3 71 1-72 1049-1119(2272)
273 cd03222 ABC_RNaseL_inhibitor T 99.9 1E-22 2.2E-27 122.8 8.8 59 14-72 72-131 (177)
274 TIGR01842 type_I_sec_PrtD type 99.9 9.6E-23 2.1E-27 138.3 9.4 70 3-72 444-513 (544)
275 cd03288 ABCC_SUR2 The SUR doma 99.9 9.7E-23 2.1E-27 127.9 8.7 69 3-72 146-214 (257)
276 PRK11174 cysteine/glutathione 99.9 9.1E-23 2E-27 139.1 9.1 66 6-72 478-543 (588)
277 COG4152 ABC-type uncharacteriz 99.9 4.4E-23 9.5E-28 129.7 7.0 71 2-72 119-189 (300)
278 cd03233 ABC_PDR_domain1 The pl 99.9 1.2E-22 2.5E-27 123.9 8.7 65 7-71 112-177 (202)
279 COG4608 AppF ABC-type oligopep 99.9 4.5E-23 9.7E-28 130.3 7.0 68 5-72 101-169 (268)
280 TIGR02868 CydC thiol reductant 99.9 9.8E-23 2.1E-27 137.6 8.7 63 9-72 466-528 (529)
281 PRK15064 ABC transporter ATP-b 99.9 1E-22 2.2E-27 137.9 8.6 68 2-72 426-494 (530)
282 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.1E-22 2.3E-27 129.4 8.1 70 2-72 116-196 (275)
283 PRK10636 putative ABC transpor 99.9 1.1E-22 2.4E-27 140.5 8.5 69 1-72 136-205 (638)
284 PRK15064 ABC transporter ATP-b 99.9 2E-22 4.3E-27 136.5 8.7 68 2-72 143-211 (530)
285 COG0410 LivF ABC-type branched 99.9 2.8E-22 6.1E-27 124.5 8.4 70 3-72 126-196 (237)
286 TIGR01192 chvA glucan exporter 99.9 3.6E-22 7.8E-27 136.7 9.5 68 4-72 462-529 (585)
287 TIGR02203 MsbA_lipidA lipid A 99.9 2.5E-22 5.4E-27 136.3 8.7 63 9-72 465-527 (571)
288 PRK10636 putative ABC transpor 99.9 2.3E-22 4.9E-27 139.0 8.5 69 1-72 417-486 (638)
289 PRK10535 macrolide transporter 99.9 4.1E-22 8.9E-27 137.8 9.4 72 1-72 132-203 (648)
290 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.4E-22 7.3E-27 136.0 8.8 69 1-72 430-499 (552)
291 PRK11176 lipid transporter ATP 99.9 3.6E-22 7.8E-27 136.0 8.8 63 9-72 476-538 (582)
292 PRK11819 putative ABC transpor 99.9 3.1E-22 6.8E-27 136.4 8.4 63 7-72 157-219 (556)
293 TIGR00955 3a01204 The Eye Pigm 99.9 3E-22 6.4E-27 137.9 8.3 72 1-72 148-225 (617)
294 PLN03140 ABC transporter G fam 99.9 4.9E-22 1.1E-26 146.1 9.6 72 1-72 1002-1078(1470)
295 PRK13657 cyclic beta-1,2-gluca 99.9 5.3E-22 1.2E-26 135.6 9.2 65 7-72 465-529 (588)
296 PRK11147 ABC transporter ATPas 99.9 4.3E-22 9.3E-27 137.4 8.6 62 8-72 151-212 (635)
297 PRK15177 Vi polysaccharide exp 99.9 4E-22 8.8E-27 122.5 7.6 70 2-72 93-162 (213)
298 TIGR02857 CydD thiol reductant 99.9 5.1E-22 1.1E-26 134.2 8.8 65 7-72 452-516 (529)
299 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.3E-22 1.6E-26 121.2 8.7 70 3-72 113-192 (213)
300 COG1119 ModF ABC-type molybden 99.9 5.6E-22 1.2E-26 124.1 8.1 72 1-72 159-232 (257)
301 PRK10790 putative multidrug tr 99.9 7.3E-22 1.6E-26 134.9 9.2 65 7-72 470-534 (592)
302 PRK10789 putative multidrug tr 99.9 7.9E-22 1.7E-26 134.5 9.1 66 6-72 444-509 (569)
303 PRK11819 putative ABC transpor 99.9 7E-22 1.5E-26 134.6 8.8 69 1-72 432-501 (556)
304 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 6.3E-22 1.4E-26 134.7 8.4 63 7-72 155-217 (552)
305 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.3E-21 2.7E-26 124.8 9.3 63 9-72 155-218 (282)
306 COG2274 SunT ABC-type bacterio 99.9 7.2E-22 1.6E-26 137.8 8.7 66 6-72 602-667 (709)
307 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.5E-21 3.3E-26 114.7 8.8 59 14-72 81-139 (157)
308 TIGR00956 3a01205 Pleiotropic 99.9 7.6E-22 1.7E-26 144.6 9.0 72 1-72 885-961 (1394)
309 PRK11147 ABC transporter ATPas 99.9 6.2E-22 1.3E-26 136.6 8.2 68 2-72 428-496 (635)
310 TIGR03375 type_I_sec_LssB type 99.9 1E-21 2.3E-26 136.2 9.2 65 7-72 595-659 (694)
311 COG4172 ABC-type uncharacteriz 99.9 4.9E-22 1.1E-26 131.8 6.9 68 5-72 149-217 (534)
312 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.6E-21 3.4E-26 113.9 8.2 59 11-72 68-126 (144)
313 COG0488 Uup ATPase components 99.9 8.4E-22 1.8E-26 134.1 8.1 67 2-72 143-209 (530)
314 PRK11160 cysteine/glutathione 99.9 1.5E-21 3.2E-26 133.4 9.1 64 8-72 470-533 (574)
315 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.5E-21 3.3E-26 135.2 9.2 62 8-72 583-644 (686)
316 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.3E-21 2.8E-26 135.9 8.9 64 6-72 608-671 (710)
317 cd03278 ABC_SMC_barmotin Barmo 99.9 1.7E-21 3.7E-26 118.8 8.3 67 5-72 105-175 (197)
318 PLN03073 ABC transporter F fam 99.9 1.4E-21 3E-26 136.6 8.7 68 2-72 332-400 (718)
319 TIGR01846 type_I_sec_HlyB type 99.9 1.9E-21 4.1E-26 134.9 9.3 69 3-72 583-651 (694)
320 PRK00349 uvrA excinuclease ABC 99.9 1.5E-21 3.3E-26 139.1 9.0 72 1-72 476-550 (943)
321 COG4988 CydD ABC-type transpor 99.9 2E-21 4.3E-26 132.0 9.0 69 3-72 446-514 (559)
322 PLN03073 ABC transporter F fam 99.9 1.9E-21 4.1E-26 135.9 9.1 69 1-72 614-683 (718)
323 TIGR01193 bacteriocin_ABC ABC- 99.9 1.9E-21 4.2E-26 135.1 9.0 64 7-72 605-668 (708)
324 TIGR02204 MsbA_rel ABC transpo 99.9 2.3E-21 4.9E-26 131.9 9.0 64 8-72 471-534 (576)
325 TIGR00630 uvra excinuclease AB 99.9 2.7E-21 5.9E-26 137.6 9.3 72 1-72 474-548 (924)
326 PTZ00265 multidrug resistance 99.9 2.4E-21 5.2E-26 142.5 9.1 65 8-72 574-639 (1466)
327 PTZ00265 multidrug resistance 99.9 2.5E-21 5.4E-26 142.4 9.0 65 8-72 1353-1418(1466)
328 TIGR00954 3a01203 Peroxysomal 99.9 3.2E-21 7E-26 133.6 8.6 59 11-72 580-638 (659)
329 TIGR01194 cyc_pep_trnsptr cycl 99.9 5.5E-21 1.2E-25 130.2 9.5 61 12-72 469-530 (555)
330 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.7E-21 1.2E-25 118.5 8.7 66 6-72 151-220 (243)
331 cd03273 ABC_SMC2_euk Eukaryoti 99.8 7.8E-21 1.7E-25 118.9 8.9 67 5-72 158-228 (251)
332 TIGR00956 3a01205 Pleiotropic 99.8 2.8E-21 6.1E-26 141.7 7.9 72 1-72 192-269 (1394)
333 PRK10522 multidrug transporter 99.8 6.7E-21 1.5E-25 129.5 8.9 62 11-72 447-509 (547)
334 COG1132 MdlB ABC-type multidru 99.8 6.3E-21 1.4E-25 129.9 8.6 66 6-72 458-523 (567)
335 KOG0061|consensus 99.8 5E-21 1.1E-25 132.0 8.1 72 1-72 153-229 (613)
336 COG4107 PhnK ABC-type phosphon 99.8 7.5E-21 1.6E-25 115.6 7.8 67 6-72 144-211 (258)
337 TIGR00958 3a01208 Conjugate Tr 99.8 6.6E-21 1.4E-25 132.8 8.4 63 7-72 611-673 (711)
338 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.1E-20 2.4E-25 115.3 8.4 68 5-72 101-175 (198)
339 KOG0055|consensus 99.8 5.7E-21 1.2E-25 137.6 8.1 62 10-72 486-547 (1228)
340 COG4987 CydC ABC-type transpor 99.8 7.2E-21 1.6E-25 128.7 8.1 68 4-72 465-532 (573)
341 KOG0059|consensus 99.8 5.2E-21 1.1E-25 135.9 7.7 72 1-72 686-757 (885)
342 cd03240 ABC_Rad50 The catalyti 99.8 1.5E-20 3.3E-25 115.1 8.0 66 7-72 109-182 (204)
343 COG1129 MglA ABC-type sugar tr 99.8 1.8E-20 4E-25 126.5 8.9 67 6-72 138-204 (500)
344 cd03275 ABC_SMC1_euk Eukaryoti 99.8 9.8E-21 2.1E-25 118.4 7.1 65 8-72 150-218 (247)
345 PRK00635 excinuclease ABC subu 99.8 2.6E-20 5.6E-25 138.2 9.3 72 1-72 463-537 (1809)
346 PRK00349 uvrA excinuclease ABC 99.8 3.7E-20 7.9E-25 132.1 9.7 71 2-72 818-892 (943)
347 COG4586 ABC-type uncharacteriz 99.8 2.1E-20 4.5E-25 119.0 7.0 72 1-72 144-216 (325)
348 cd03274 ABC_SMC4_euk Eukaryoti 99.8 5E-20 1.1E-24 113.4 8.5 70 2-72 116-189 (212)
349 COG3845 ABC-type uncharacteriz 99.8 3.2E-20 7E-25 124.5 8.2 71 2-72 129-199 (501)
350 PRK00635 excinuclease ABC subu 99.8 4.7E-20 1E-24 136.8 9.6 72 1-72 796-871 (1809)
351 COG1129 MglA ABC-type sugar tr 99.8 2.5E-20 5.5E-25 125.8 7.4 67 6-72 394-460 (500)
352 KOG0055|consensus 99.8 2.5E-20 5.4E-25 134.3 7.6 66 6-72 1119-1184(1228)
353 KOG0058|consensus 99.8 2.6E-20 5.6E-25 129.0 7.3 63 9-72 600-662 (716)
354 PLN03232 ABC transporter C fam 99.8 6.5E-20 1.4E-24 135.2 9.0 69 3-72 1361-1429(1495)
355 TIGR00630 uvra excinuclease AB 99.8 1E-19 2.2E-24 129.7 9.7 72 1-72 815-890 (924)
356 COG4133 CcmA ABC-type transpor 99.8 9.2E-20 2E-24 110.8 8.0 72 1-72 118-189 (209)
357 PLN03140 ABC transporter G fam 99.8 3E-20 6.4E-25 136.8 6.1 72 1-72 319-396 (1470)
358 PLN03130 ABC transporter C fam 99.8 1.4E-19 3E-24 134.1 9.1 69 3-72 1364-1432(1622)
359 TIGR00957 MRP_assoc_pro multi 99.8 1.9E-19 4E-24 132.9 8.8 68 4-72 1412-1479(1522)
360 COG4604 CeuD ABC-type enteroch 99.8 4.9E-20 1.1E-24 113.3 4.8 72 1-72 123-195 (252)
361 COG4619 ABC-type uncharacteriz 99.8 1.6E-19 3.6E-24 108.9 6.7 68 5-72 125-193 (223)
362 PTZ00243 ABC transporter; Prov 99.8 2.6E-19 5.6E-24 132.4 9.1 70 3-72 772-841 (1560)
363 PLN03232 ABC transporter C fam 99.8 2.9E-19 6.3E-24 131.8 9.0 63 9-72 736-799 (1495)
364 TIGR00957 MRP_assoc_pro multi 99.8 3E-19 6.5E-24 131.9 8.9 66 7-72 754-821 (1522)
365 TIGR01271 CFTR_protein cystic 99.8 6.3E-19 1.4E-23 130.0 9.0 63 9-72 1349-1411(1490)
366 TIGR01271 CFTR_protein cystic 99.8 7.8E-19 1.7E-23 129.5 9.3 64 8-72 543-607 (1490)
367 PTZ00243 ABC transporter; Prov 99.8 7.3E-19 1.6E-23 130.1 9.0 63 9-72 1441-1504(1560)
368 PLN03130 ABC transporter C fam 99.8 8.3E-19 1.8E-23 130.1 9.3 64 8-72 735-799 (1622)
369 COG0488 Uup ATPase components 99.8 6.6E-19 1.4E-23 120.0 7.9 65 5-72 431-495 (530)
370 KOG0057|consensus 99.8 5.7E-19 1.2E-23 119.8 7.5 65 7-72 481-545 (591)
371 cd03239 ABC_SMC_head The struc 99.8 2E-18 4.3E-23 104.0 8.9 59 14-72 95-157 (178)
372 COG4618 ArpD ABC-type protease 99.8 2.4E-18 5.2E-23 116.3 8.9 62 11-72 470-531 (580)
373 COG4136 ABC-type uncharacteriz 99.8 7.4E-19 1.6E-23 104.8 5.5 71 2-72 123-194 (213)
374 KOG0062|consensus 99.8 1.4E-18 3.1E-23 117.4 7.2 65 5-72 190-254 (582)
375 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.9E-18 6.3E-23 105.7 7.7 67 6-72 119-191 (213)
376 COG1101 PhnK ABC-type uncharac 99.8 1.7E-18 3.6E-23 107.5 6.6 72 1-72 136-208 (263)
377 COG4674 Uncharacterized ABC-ty 99.8 9.4E-19 2E-23 107.5 5.2 70 2-72 136-205 (249)
378 COG0396 sufC Cysteine desulfur 99.8 4.5E-18 9.7E-23 106.0 8.2 71 2-72 131-203 (251)
379 COG1245 Predicted ATPase, RNas 99.8 2E-18 4.3E-23 116.0 6.9 72 1-72 201-272 (591)
380 TIGR00618 sbcc exonuclease Sbc 99.7 7E-18 1.5E-22 121.4 8.9 68 5-72 942-1019(1042)
381 COG1245 Predicted ATPase, RNas 99.7 1E-17 2.3E-22 112.5 7.5 72 1-72 443-515 (591)
382 COG4559 ABC-type hemin transpo 99.7 1.6E-17 3.5E-22 103.0 7.6 71 2-72 124-200 (259)
383 PRK10246 exonuclease subunit S 99.7 2.5E-17 5.4E-22 118.8 9.0 66 7-72 943-1016(1047)
384 cd03227 ABC_Class2 ABC-type Cl 99.7 4.1E-17 8.8E-22 96.7 8.1 60 13-72 77-140 (162)
385 cd03241 ABC_RecN RecN ATPase i 99.7 2.5E-17 5.3E-22 104.6 7.6 62 10-72 167-232 (276)
386 COG4778 PhnL ABC-type phosphon 99.7 9.7E-18 2.1E-22 101.6 5.0 64 9-72 148-211 (235)
387 PHA02562 46 endonuclease subun 99.7 3.2E-17 7E-22 111.3 7.2 63 8-72 463-536 (562)
388 KOG0927|consensus 99.7 4.4E-17 9.5E-22 110.8 6.5 67 4-72 212-278 (614)
389 PRK03918 chromosome segregatio 99.7 9.5E-17 2.1E-21 113.4 8.0 66 7-72 782-853 (880)
390 TIGR00634 recN DNA repair prot 99.7 1.2E-16 2.6E-21 109.5 7.9 60 12-72 439-502 (563)
391 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.5E-16 3.2E-21 96.9 7.1 68 4-72 82-150 (200)
392 TIGR00606 rad50 rad50. This fa 99.7 3.2E-16 6.9E-21 114.9 8.5 63 10-72 1196-1269(1311)
393 KOG0927|consensus 99.7 1.3E-16 2.8E-21 108.5 5.4 69 1-72 496-565 (614)
394 TIGR02168 SMC_prok_B chromosom 99.7 4.1E-16 8.8E-21 111.4 7.6 66 6-72 1082-1151(1179)
395 KOG0062|consensus 99.7 4E-16 8.6E-21 105.7 6.9 69 1-72 469-538 (582)
396 PRK10869 recombination and rep 99.6 7.6E-16 1.7E-20 105.6 8.3 60 12-72 429-492 (553)
397 COG1134 TagH ABC-type polysacc 99.6 7.8E-16 1.7E-20 96.5 7.1 71 2-72 136-206 (249)
398 KOG0065|consensus 99.6 9.3E-17 2E-21 116.7 2.8 72 1-72 913-989 (1391)
399 COG5265 ATM1 ABC-type transpor 99.6 3.9E-16 8.6E-21 104.0 5.3 61 11-72 397-457 (497)
400 KOG0066|consensus 99.6 7E-16 1.5E-20 104.3 6.3 69 1-72 691-760 (807)
401 PRK01156 chromosome segregatio 99.6 6E-15 1.3E-19 104.9 8.8 65 8-72 796-869 (895)
402 KOG0054|consensus 99.6 3.9E-15 8.5E-20 109.2 7.7 64 9-72 639-702 (1381)
403 COG4178 ABC-type uncharacteriz 99.6 3.9E-15 8.5E-20 102.6 7.0 60 12-72 514-573 (604)
404 COG4167 SapF ABC-type antimicr 99.6 6.3E-15 1.4E-19 90.4 6.8 69 4-72 140-209 (267)
405 KOG0056|consensus 99.6 2.1E-15 4.4E-20 102.8 5.0 61 11-72 672-732 (790)
406 PF00005 ABC_tran: ABC transpo 99.6 2.4E-15 5.2E-20 86.1 4.6 35 8-42 103-137 (137)
407 COG4138 BtuD ABC-type cobalami 99.6 5.5E-16 1.2E-20 94.4 1.6 72 1-72 113-191 (248)
408 COG4170 SapD ABC-type antimicr 99.6 1.5E-15 3.4E-20 94.9 2.5 67 6-72 151-218 (330)
409 COG0178 UvrA Excinuclease ATPa 99.6 2.8E-14 6.1E-19 100.7 8.5 66 7-72 816-884 (935)
410 TIGR02169 SMC_prok_A chromosom 99.5 1.4E-14 3.1E-19 103.9 7.0 65 7-72 1068-1136(1164)
411 smart00534 MUTSac ATPase domai 99.5 4E-14 8.7E-19 85.5 6.9 70 2-72 50-121 (185)
412 COG3845 ABC-type uncharacteriz 99.5 2.2E-14 4.8E-19 96.7 6.1 66 7-72 397-462 (501)
413 KOG0054|consensus 99.5 8.8E-14 1.9E-18 102.3 8.6 70 2-72 1264-1333(1381)
414 PRK02224 chromosome segregatio 99.5 1.3E-13 2.8E-18 97.9 7.5 63 10-72 778-853 (880)
415 cd03243 ABC_MutS_homologs The 99.5 2.1E-13 4.5E-18 83.2 7.3 65 7-72 85-150 (202)
416 cd03242 ABC_RecF RecF is a rec 99.5 1.9E-13 4.1E-18 86.6 6.3 58 11-71 181-247 (270)
417 cd03285 ABC_MSH2_euk MutS2 hom 99.4 4.9E-13 1.1E-17 83.0 7.1 61 10-72 86-152 (222)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.4 5.7E-13 1.2E-17 81.9 6.9 67 5-72 83-150 (204)
419 TIGR00611 recf recF protein. A 99.4 8.4E-13 1.8E-17 87.0 6.9 58 12-72 274-340 (365)
420 TIGR02680 conserved hypothetic 99.4 1E-12 2.3E-17 97.0 7.8 64 6-72 1240-1315(1353)
421 COG0419 SbcC ATPase involved i 99.4 1.7E-12 3.7E-17 92.9 8.4 64 9-72 811-882 (908)
422 KOG0066|consensus 99.4 1.8E-13 3.9E-18 92.8 2.9 65 5-72 404-468 (807)
423 PRK00064 recF recombination pr 99.4 1.9E-12 4E-17 85.1 6.6 60 10-72 270-338 (361)
424 KOG0060|consensus 99.4 1.9E-12 4.1E-17 89.1 6.8 58 12-72 569-626 (659)
425 COG0178 UvrA Excinuclease ATPa 99.4 4.7E-12 1E-16 89.7 8.3 66 7-72 475-542 (935)
426 KOG2355|consensus 99.3 1.3E-12 2.9E-17 81.4 4.4 63 9-71 143-206 (291)
427 PRK00409 recombination and DNA 99.3 3.7E-12 8E-17 90.4 7.1 66 6-72 383-449 (782)
428 PF13304 AAA_21: AAA domain; P 99.3 2.2E-11 4.9E-16 73.2 8.3 64 9-72 232-298 (303)
429 TIGR01069 mutS2 MutS2 family p 99.3 1.4E-11 3.1E-16 87.4 7.1 64 8-72 380-444 (771)
430 cd03283 ABC_MutS-like MutS-lik 99.3 3.8E-11 8.2E-16 73.5 8.1 56 17-72 89-147 (199)
431 COG4615 PvdE ABC-type sideroph 99.3 2.3E-11 5E-16 81.5 7.0 62 11-72 446-508 (546)
432 PF02463 SMC_N: RecF/RecN/SMC 99.2 7.7E-11 1.7E-15 72.3 7.8 60 12-72 135-198 (220)
433 cd03281 ABC_MSH5_euk MutS5 hom 99.2 8E-11 1.7E-15 72.7 7.5 56 17-72 94-153 (213)
434 KOG0063|consensus 99.2 2E-11 4.3E-16 82.3 4.5 70 3-72 203-272 (592)
435 KOG0063|consensus 99.2 9.8E-12 2.1E-16 83.8 3.0 70 3-72 446-516 (592)
436 KOG0065|consensus 99.2 9.6E-12 2.1E-16 91.2 3.0 71 1-71 243-319 (1391)
437 PF13558 SbcCD_C: Putative exo 99.1 2.2E-10 4.7E-15 62.5 5.7 51 8-58 27-90 (90)
438 cd01124 KaiC KaiC is a circadi 99.1 3.8E-10 8.3E-15 67.2 6.8 67 6-72 64-139 (187)
439 COG2401 ABC-type ATPase fused 99.0 6.5E-10 1.4E-14 75.1 5.7 65 8-72 502-567 (593)
440 KOG0064|consensus 99.0 3.4E-10 7.4E-15 78.0 4.3 58 12-72 611-668 (728)
441 PRK14079 recF recombination pr 99.0 1.1E-09 2.5E-14 71.8 6.3 47 12-58 262-317 (349)
442 cd03284 ABC_MutS1 MutS1 homolo 99.0 8E-10 1.7E-14 68.4 5.2 59 12-72 84-152 (216)
443 PTZ00132 GTP-binding nuclear p 99.0 8.6E-10 1.9E-14 67.4 5.1 44 18-61 157-205 (215)
444 cd03286 ABC_MSH6_euk MutS6 hom 98.9 1.6E-08 3.5E-13 62.8 7.3 55 18-72 96-152 (218)
445 cd03287 ABC_MSH3_euk MutS3 hom 98.8 6E-08 1.3E-12 60.5 7.6 55 18-72 97-153 (222)
446 PRK13695 putative NTPase; Prov 98.7 1.3E-07 2.8E-12 56.3 6.4 60 9-72 74-135 (174)
447 COG1196 Smc Chromosome segrega 98.6 1.6E-07 3.4E-12 69.3 6.7 63 9-72 1062-1128(1163)
448 PRK13891 conjugal transfer pro 98.6 2.4E-07 5.1E-12 66.8 6.8 49 24-72 680-729 (852)
449 PF13175 AAA_15: AAA ATPase do 98.6 4.4E-07 9.5E-12 59.4 7.5 64 9-72 337-411 (415)
450 PRK13830 conjugal transfer pro 98.5 3.8E-07 8.3E-12 65.5 6.5 46 27-72 648-694 (818)
451 TIGR03185 DNA_S_dndD DNA sulfu 98.5 5.9E-07 1.3E-11 63.0 6.9 59 10-72 548-613 (650)
452 COG3910 Predicted ATPase [Gene 98.4 1.4E-06 3.1E-11 53.8 6.9 59 13-72 129-187 (233)
453 PRK08533 flagellar accessory p 98.4 1.6E-06 3.6E-11 54.1 6.9 42 30-71 116-161 (230)
454 PRK06067 flagellar accessory p 98.4 3.4E-06 7.4E-11 52.3 7.8 60 13-72 100-164 (234)
455 PF13166 AAA_13: AAA domain 98.3 4.7E-06 1E-10 58.6 8.6 64 9-72 496-570 (712)
456 COG4637 Predicted ATPase [Gene 98.3 4.4E-06 9.5E-11 55.0 7.0 60 12-72 269-330 (373)
457 cd01125 repA Hexameric Replica 98.3 7.1E-07 1.5E-11 55.6 3.2 44 28-72 108-158 (239)
458 cd01120 RecA-like_NTPases RecA 98.2 1E-05 2.3E-10 46.4 7.1 60 13-72 67-136 (165)
459 PRK13873 conjugal transfer ATP 98.2 5.7E-06 1.2E-10 59.4 6.2 47 26-72 630-677 (811)
460 KOG0964|consensus 98.1 1.6E-06 3.5E-11 63.0 2.6 53 10-62 1094-1150(1200)
461 TIGR02858 spore_III_AA stage I 98.1 2.3E-05 5E-10 50.2 6.8 42 24-72 187-228 (270)
462 PRK13898 type IV secretion sys 98.0 2.1E-05 4.5E-10 56.5 6.6 46 27-72 638-684 (800)
463 KOG0962|consensus 98.0 1.5E-05 3.2E-10 59.5 5.9 60 13-72 1183-1253(1294)
464 PRK05399 DNA mismatch repair p 97.9 6.4E-05 1.4E-09 54.6 7.8 63 8-72 661-729 (854)
465 KOG0996|consensus 97.9 1.4E-05 3.1E-10 59.1 3.6 61 9-70 1191-1255(1293)
466 cd01128 rho_factor Transcripti 97.9 6.9E-06 1.5E-10 52.1 1.7 58 11-72 127-193 (249)
467 KOG0933|consensus 97.9 1.7E-05 3.7E-10 58.0 3.8 60 10-70 1079-1142(1174)
468 COG0497 RecN ATPase involved i 97.8 0.00022 4.7E-09 49.8 7.7 59 12-71 430-492 (557)
469 TIGR02655 circ_KaiC circadian 97.8 2E-06 4.3E-11 58.7 -2.2 57 6-72 108-166 (484)
470 KOG0018|consensus 97.7 5.4E-05 1.2E-09 55.7 3.8 61 7-70 1045-1109(1141)
471 PF00488 MutS_V: MutS domain V 97.6 0.00087 1.9E-08 42.1 8.3 62 11-72 100-165 (235)
472 PRK08699 DNA polymerase III su 97.5 0.00024 5.2E-09 46.6 4.5 37 35-72 116-152 (325)
473 COG4694 Uncharacterized protei 97.4 0.00099 2.2E-08 46.9 7.0 64 9-72 524-596 (758)
474 PF13514 AAA_27: AAA domain 97.3 0.001 2.2E-08 49.5 6.4 62 9-71 1021-1090(1111)
475 TIGR01070 mutS1 DNA mismatch r 97.2 0.0029 6.3E-08 46.2 7.5 62 11-72 649-714 (840)
476 PRK06793 fliI flagellum-specif 97.1 0.00081 1.8E-08 45.8 3.9 59 11-71 219-284 (432)
477 cd01131 PilT Pilus retraction 97.1 0.0026 5.7E-08 38.8 5.7 43 23-72 66-108 (198)
478 smart00382 AAA ATPases associa 96.7 0.037 8E-07 30.1 8.7 61 11-71 58-124 (148)
479 TIGR00152 dephospho-CoA kinase 96.5 0.00097 2.1E-08 40.1 0.8 54 16-71 60-113 (188)
480 PRK06893 DNA replication initi 96.5 0.01 2.2E-07 36.9 5.2 43 29-71 89-132 (229)
481 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.011 2.5E-07 36.3 5.3 42 30-71 106-152 (224)
482 TIGR01420 pilT_fam pilus retra 96.4 0.015 3.3E-07 38.3 6.0 45 21-72 185-229 (343)
483 TIGR02788 VirB11 P-type DNA tr 96.4 0.015 3.3E-07 37.7 5.9 44 21-72 208-252 (308)
484 PRK14088 dnaA chromosomal repl 96.3 0.01 2.2E-07 40.4 5.0 41 30-70 193-234 (440)
485 COG1195 RecF Recombinational D 96.1 0.019 4.1E-07 38.6 5.2 44 12-55 274-326 (363)
486 COG4938 Uncharacterized conser 96.1 0.015 3.3E-07 38.4 4.6 49 23-72 252-301 (374)
487 PRK04863 mukB cell division pr 96.1 0.0083 1.8E-07 46.3 3.8 57 10-70 1362-1435(1486)
488 PF09818 ABC_ATPase: Predicted 96.0 0.024 5.1E-07 39.0 5.4 59 12-70 321-395 (448)
489 cd00009 AAA The AAA+ (ATPases 95.6 0.062 1.3E-06 29.6 5.4 50 21-71 74-128 (151)
490 TIGR00929 VirB4_CagE type IV s 95.4 0.064 1.4E-06 38.5 6.0 44 29-72 627-671 (785)
491 PRK14087 dnaA chromosomal repl 95.2 0.17 3.7E-06 34.7 7.1 47 25-71 200-247 (450)
492 PRK08181 transposase; Validate 95.0 0.095 2.1E-06 33.8 5.2 42 29-71 165-207 (269)
493 cd01122 GP4d_helicase GP4d_hel 94.8 0.068 1.5E-06 33.6 4.3 52 20-71 127-189 (271)
494 PTZ00454 26S protease regulato 94.7 0.2 4.4E-06 33.9 6.6 50 23-72 230-293 (398)
495 PRK07721 fliI flagellum-specif 94.7 0.11 2.4E-06 35.6 5.3 61 12-72 222-315 (438)
496 PRK09302 circadian clock prote 94.5 0.07 1.5E-06 36.8 4.0 43 30-72 129-176 (509)
497 COG4913 Uncharacterized protei 94.4 0.19 4.1E-06 37.0 5.9 48 12-59 989-1049(1104)
498 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.12 2.7E-06 30.9 4.3 51 21-72 83-137 (159)
499 PRK00454 engB GTP-binding prot 94.3 0.099 2.2E-06 30.9 4.0 49 10-62 144-195 (196)
500 PRK06526 transposase; Provisio 94.2 0.21 4.5E-06 31.9 5.4 42 29-71 157-199 (254)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.9e-30 Score=158.54 Aligned_cols=72 Identities=28% Similarity=0.560 Sum_probs=70.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||.++++.||.+||||||||++|||||+.+|+++++|||||+|||....++.+.+++++++|.|.+++||+
T Consensus 124 VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE 195 (240)
T COG1126 124 VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195 (240)
T ss_pred cCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence 588899999999999999999999999999999999999999999999999999999999999999999995
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.6e-30 Score=160.59 Aligned_cols=72 Identities=32% Similarity=0.708 Sum_probs=70.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||.+++|+++.+|||||+||+.|||||+++|++++|||||+|+|+.++..+.++|.+++++|+||+++|||
T Consensus 127 Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 127 VGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478899999999999999999999999999999999999999999999999999999999889999999997
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2e-29 Score=157.49 Aligned_cols=72 Identities=28% Similarity=0.545 Sum_probs=69.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||.++.+++|.+||||||||++||||++.+|++++|||||+.||..++..+.+.+.+++++ +.||++||||
T Consensus 118 VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred cCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 58889999999999999999999999999999999999999999999999999999999765 9999999997
No 4
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=9.6e-29 Score=153.35 Aligned_cols=72 Identities=28% Similarity=0.622 Sum_probs=67.1
Q ss_pred CCCcchhc-CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRH-RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~-~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..+ ++|.+|||||||||+||||++.+|++++.||||.+||..+.+.+++++.++.++ |.|+|++|||
T Consensus 129 lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 129 LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred cCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 47775556 889999999999999999999999999999999999999999999999999765 9999999997
No 5
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=3.8e-28 Score=151.50 Aligned_cols=72 Identities=33% Similarity=0.611 Sum_probs=68.0
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+... .+++|.+|||||+||+++|||++.+|+++++||||+||||.+...+-++|+++++. |.|+++||||
T Consensus 132 VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD 205 (263)
T COG1127 132 VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205 (263)
T ss_pred cCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC
Confidence 466655 89999999999999999999999999999999999999999999999999999876 9999999997
No 6
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=1.7e-27 Score=145.76 Aligned_cols=72 Identities=26% Similarity=0.584 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus 126 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 126 VGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467777889999999999999999999999999999999999999999999999999987678999999997
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-27 Score=153.77 Aligned_cols=72 Identities=33% Similarity=0.622 Sum_probs=69.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.++.++||.+|||||||||+|||||+.+|++++.||||+.|||.+.+.+.++|+++.++ |.||+++||.
T Consensus 129 VgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE 201 (339)
T COG1135 129 VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE 201 (339)
T ss_pred cCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech
Confidence 58899999999999999999999999999999999999999999999999999999999765 9999999994
No 8
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=3.5e-27 Score=143.61 Aligned_cols=72 Identities=29% Similarity=0.550 Sum_probs=68.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++++++++|.|+|++||+
T Consensus 114 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 114 LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred cCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467778899999999999999999999999999999999999999999999999999987778999999996
No 9
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=3.3e-27 Score=144.01 Aligned_cols=72 Identities=36% Similarity=0.693 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.+++++|.|||++||+
T Consensus 122 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 466677889999999999999999999999999999999999999999999999999987678999999996
No 10
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=3.3e-27 Score=142.35 Aligned_cols=72 Identities=33% Similarity=0.673 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus 115 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred cCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 467777899999999999999999999999999999999999999999999999999987778999999996
No 11
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=4.3e-27 Score=143.77 Aligned_cols=72 Identities=36% Similarity=0.753 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.+.+++++|.|||++||+
T Consensus 120 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~ 191 (213)
T cd03235 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191 (213)
T ss_pred cCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 366677889999999999999999999999999999999999999999999999999987678999999996
No 12
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-27 Score=149.42 Aligned_cols=72 Identities=35% Similarity=0.662 Sum_probs=68.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||.+++.+|+++||||||+|||+..++.+.++++++.++ |.|+|++|||
T Consensus 126 vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 126 VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred cCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 47788899999999999999999999999999999999999999999999999999999877 7999999997
No 13
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.6e-27 Score=144.09 Aligned_cols=72 Identities=32% Similarity=0.544 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.++++ .|.|||++||+
T Consensus 118 ~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 118 VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred cCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4677778899999999999999999999999999999999999999999999999999876 48999999996
No 14
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=4.7e-27 Score=143.92 Aligned_cols=72 Identities=29% Similarity=0.575 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.+ .|.|||++||+
T Consensus 128 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 128 VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred cCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4677778899999999999999999999999999999999999999999999999999876 58999999996
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=4.1e-27 Score=150.62 Aligned_cols=72 Identities=44% Similarity=0.816 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~h~ 72 (72)
||+.+..+++++.||+|||||++||+||+.+|+++||||||+||||.++..++++|++++++| .||+++||.
T Consensus 124 ~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~ 196 (293)
T COG1131 124 FGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI 196 (293)
T ss_pred cCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc
Confidence 467766688999999999999999999999999999999999999999999999999998876 899999995
No 16
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.94 E-value=4.9e-27 Score=150.27 Aligned_cols=72 Identities=42% Similarity=0.804 Sum_probs=68.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus 112 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~ 183 (302)
T TIGR01188 112 FELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183 (302)
T ss_pred cCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 467778899999999999999999999999999999999999999999999999999987779999999996
No 17
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=6.3e-27 Score=143.02 Aligned_cols=72 Identities=29% Similarity=0.624 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.++++++.++|.|||++||+
T Consensus 125 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 125 VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 366667788999999999999999999999999999999999999999999999999987678999999996
No 18
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.8e-27 Score=147.57 Aligned_cols=71 Identities=34% Similarity=0.619 Sum_probs=67.0
Q ss_pred CC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 2 GL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
|+ ..+.+++|.+|||||+||++|||||+.+|+++|+||||+.||...+..+++++.+++++ +.|+||+|||
T Consensus 129 gL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 129 GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201 (252)
T ss_pred CCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc
Confidence 55 36889999999999999999999999999999999999999999999999999999875 8999999997
No 19
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=3.6e-27 Score=148.61 Aligned_cols=72 Identities=39% Similarity=0.762 Sum_probs=67.9
Q ss_pred CCCc--chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT--EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~--~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||+ ++.+++|.+|||||+||+.++|||+.+|++++|||||++|||.++..+.+.+.++.++ |+||+|+|||
T Consensus 121 vgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD 195 (309)
T COG1125 121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD 195 (309)
T ss_pred hCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 3665 4899999999999999999999999999999999999999999999999999999776 9999999997
No 20
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=8.1e-27 Score=149.75 Aligned_cols=72 Identities=42% Similarity=0.738 Sum_probs=68.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||+|||||++||+|++++|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus 126 ~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~ 197 (306)
T PRK13537 126 AKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHF 197 (306)
T ss_pred cCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 467778899999999999999999999999999999999999999999999999999987779999999996
No 21
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.94 E-value=7.3e-27 Score=142.09 Aligned_cols=72 Identities=24% Similarity=0.555 Sum_probs=69.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||.++++..|.+||||||||++||||++.+|+++|.||||.+|||....+++.++.++.+.|.||+|.|||
T Consensus 125 VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd 196 (223)
T COG2884 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD 196 (223)
T ss_pred hccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc
Confidence 478889999999999999999999999999999999999999999999999999999998889999999997
No 22
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=9.4e-27 Score=144.10 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus 124 ~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 124 VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 46777788999999999999999999999999999999999999999999999999998764 8999999996
No 23
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=142.71 Aligned_cols=72 Identities=33% Similarity=0.608 Sum_probs=67.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.++++++++.+ .|.|||++||+
T Consensus 119 ~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 119 VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred cCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4677778899999999999999999999999999999999999999999999999999865 48999999996
No 24
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=1.1e-26 Score=141.84 Aligned_cols=72 Identities=28% Similarity=0.598 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++|.|+|++||+
T Consensus 124 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~ 195 (214)
T cd03292 124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195 (214)
T ss_pred cCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 366777888999999999999999999999999999999999999999999999999987678999999996
No 25
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=1.1e-26 Score=142.44 Aligned_cols=72 Identities=25% Similarity=0.539 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 129 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 129 VGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777788999999999999999999999999999999999999999999999999998764 8999999996
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=1.1e-26 Score=151.28 Aligned_cols=72 Identities=31% Similarity=0.587 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++|||||+++|+++|+||||++||+.++..++++++++.++ |.|||++||+
T Consensus 128 vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47888899999999999999999999999999999999999999999999999999999765 9999999996
No 27
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=1.4e-26 Score=143.13 Aligned_cols=72 Identities=33% Similarity=0.653 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.++++++++.++|.|||++||+
T Consensus 131 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 202 (236)
T cd03219 131 VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202 (236)
T ss_pred cCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 467777889999999999999999999999999999999999999999999999999987678999999996
No 28
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=1.5e-26 Score=148.10 Aligned_cols=72 Identities=43% Similarity=0.704 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.++++++++.++|.|||++||+
T Consensus 123 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~ 194 (303)
T TIGR01288 123 ARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 194 (303)
T ss_pred CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 466777899999999999999999999999999999999999999999999999999987779999999996
No 29
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=1.6e-26 Score=141.14 Aligned_cols=72 Identities=24% Similarity=0.523 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++||+
T Consensus 118 ~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 118 LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred cCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46777789999999999999999999999999999999999999999999999999998764 8999999996
No 30
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.7e-26 Score=141.86 Aligned_cols=72 Identities=40% Similarity=0.771 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||+++|+|++.+|+++|+||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777788999999999999999999999999999999999999999999999999998776 8999999996
No 31
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=1.8e-26 Score=150.03 Aligned_cols=72 Identities=43% Similarity=0.719 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||+|||||++||+|++++|+++||||||+|||+.+++.++++++++.++|.|||++||+
T Consensus 160 ~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~ 231 (340)
T PRK13536 160 ARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF 231 (340)
T ss_pred cCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 467778899999999999999999999999999999999999999999999999999987779999999996
No 32
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=1.4e-26 Score=141.12 Aligned_cols=72 Identities=33% Similarity=0.648 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++|.|+|++||+
T Consensus 114 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 185 (208)
T cd03268 114 VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185 (208)
T ss_pred cCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 366677888999999999999999999999999999999999999999999999999987778999999996
No 33
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=2.4e-26 Score=140.27 Aligned_cols=72 Identities=28% Similarity=0.545 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++||+
T Consensus 123 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~ 194 (213)
T cd03262 123 VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194 (213)
T ss_pred cCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 466677889999999999999999999999999999999999999999999999999987778999999996
No 34
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.2e-26 Score=142.49 Aligned_cols=72 Identities=28% Similarity=0.616 Sum_probs=67.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++++++.++ |.|||++||+
T Consensus 132 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 132 VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred cCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46667788899999999999999999999999999999999999999999999999998764 8999999996
No 35
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=1.6e-26 Score=141.53 Aligned_cols=72 Identities=35% Similarity=0.694 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|||++||+
T Consensus 124 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 195 (218)
T cd03266 124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195 (218)
T ss_pred cCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467777889999999999999999999999999999999999999999999999999987678999999996
No 36
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=2.1e-26 Score=142.58 Aligned_cols=72 Identities=33% Similarity=0.546 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 102 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 102 VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777788999999999999999999999999999999999999999999999999998764 8999999996
No 37
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.6e-26 Score=142.10 Aligned_cols=72 Identities=26% Similarity=0.605 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.++++ .|.|||++||+
T Consensus 133 ~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 133 VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4677778889999999999999999999999999999999999999999999999999865 48999999996
No 38
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=3.2e-26 Score=139.11 Aligned_cols=72 Identities=31% Similarity=0.634 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||+||+||+++|+|++++|+++||||||+|||+.+++.+.++++++.++|.|+|++||+
T Consensus 122 ~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 193 (206)
T TIGR03608 122 VGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193 (206)
T ss_pred cCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467778889999999999999999999999999999999999999999999999999987678999999996
No 39
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-26 Score=140.48 Aligned_cols=72 Identities=35% Similarity=0.577 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++++++++ |.|+|++||+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 119 LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred cCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 36666778899999999999999999999999999999999999999999999999998765 8999999996
No 40
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=2.7e-26 Score=142.40 Aligned_cols=72 Identities=28% Similarity=0.586 Sum_probs=66.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus 133 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 133 VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35667778899999999999999999999999999999999999999999999999998664 8999999996
No 41
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.4e-26 Score=142.66 Aligned_cols=72 Identities=26% Similarity=0.440 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++ |.|||++||+
T Consensus 124 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 124 VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred cCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46667788899999999999999999999999999999999999999999999999998765 8999999996
No 42
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.4e-26 Score=150.23 Aligned_cols=72 Identities=19% Similarity=0.454 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 122 ~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 122 LELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47888899999999999999999999999999999999999999999999999999998765 9999999997
No 43
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.7e-27 Score=143.21 Aligned_cols=72 Identities=38% Similarity=0.698 Sum_probs=69.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+|.++.|+++..+|.||||||+||||++++|++++|||||+|||..+.+.+.+++++++++|++|+|+||.
T Consensus 121 l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~ 192 (245)
T COG4555 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192 (245)
T ss_pred hChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc
Confidence 467889999999999999999999999999999999999999999999999999999998889999999995
No 44
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=3.2e-26 Score=141.29 Aligned_cols=72 Identities=31% Similarity=0.635 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++.+.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++|.|+|++||+
T Consensus 121 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 192 (232)
T cd03218 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN 192 (232)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 366777889999999999999999999999999999999999999999999999999987778999999996
No 45
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3e-26 Score=139.83 Aligned_cols=72 Identities=35% Similarity=0.683 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+
T Consensus 116 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 116 LELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred cCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 366677888999999999999999999999999999999999999999999999999987678999999996
No 46
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=3.7e-26 Score=138.59 Aligned_cols=72 Identities=31% Similarity=0.491 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++++.+||+||+||+++|++++.+|++++|||||+|||+.+++.+.+.+.+++++|.|+|++||+
T Consensus 115 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 115 VGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred cCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 467777889999999999999999999999999999999999999999999999999987778999999996
No 47
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=3.6e-26 Score=139.25 Aligned_cols=72 Identities=31% Similarity=0.508 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++++|+++++||||+|||+.+++.+.+++++++++|.|+|++||+
T Consensus 117 ~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 117 VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred cCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 467677889999999999999999999999999999999999999999999999999987678999999996
No 48
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=4.5e-26 Score=138.68 Aligned_cols=72 Identities=31% Similarity=0.527 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||+++|++++.+|+++||||||+|||+..++.+.+.+.++.++|.|+|++||+
T Consensus 113 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 184 (201)
T cd03231 113 VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184 (201)
T ss_pred cCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 366677888999999999999999999999999999999999999999999999999887778999999996
No 49
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=4.4e-26 Score=142.02 Aligned_cols=72 Identities=28% Similarity=0.509 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus 132 ~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 132 VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred cCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 366677788999999999999999999999999999999999999999999999999987678999999996
No 50
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=2.8e-26 Score=144.61 Aligned_cols=72 Identities=29% Similarity=0.560 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+.+.+++++.+||||||||+.|||||+++|++++|||||++||...+-+++++++++.+ +|.|++++.||
T Consensus 126 ~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 126 LGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred hCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3678899999999999999999999999999999999999999999999999999999985 49999999997
No 51
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=4.6e-26 Score=140.05 Aligned_cols=72 Identities=21% Similarity=0.487 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|+|++||+
T Consensus 125 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (222)
T PRK10908 125 VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196 (222)
T ss_pred cCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356667788999999999999999999999999999999999999999999999999987678999999996
No 52
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=4.1e-26 Score=140.61 Aligned_cols=72 Identities=26% Similarity=0.549 Sum_probs=67.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++++++++ |.|||++||+
T Consensus 134 ~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 134 LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred cCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46667778899999999999999999999999999999999999999999999999998664 8999999996
No 53
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.2e-26 Score=139.24 Aligned_cols=72 Identities=26% Similarity=0.602 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||+|||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus 116 ~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 116 VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred cCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 36677788999999999999999999999999999999999999999999999999998754 8999999996
No 54
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=3.6e-26 Score=149.72 Aligned_cols=72 Identities=24% Similarity=0.440 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++||||+.+|+++||||||++||+..+..+.+.++++.++ |.|+|++|||
T Consensus 125 ~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 125 VGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred cCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 47888899999999999999999999999999999999999999999999999999998765 7999999997
No 55
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.1e-26 Score=143.57 Aligned_cols=72 Identities=31% Similarity=0.592 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+++.++.++|.|||++||+
T Consensus 124 ~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 195 (271)
T PRK13638 124 VDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195 (271)
T ss_pred cCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 366677889999999999999999999999999999999999999999999999999987678999999996
No 56
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.2e-26 Score=146.08 Aligned_cols=72 Identities=33% Similarity=0.658 Sum_probs=67.7
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus 152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 4675 67899999999999999999999999999999999999999999999999999987779999999997
No 57
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.4e-26 Score=143.90 Aligned_cols=72 Identities=25% Similarity=0.539 Sum_probs=68.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.++..+.+++++++++|.|||++||+
T Consensus 126 ~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~ 197 (274)
T PRK13647 126 VRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197 (274)
T ss_pred CCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467778899999999999999999999999999999999999999999999999999987678999999996
No 58
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=5.4e-26 Score=138.83 Aligned_cols=72 Identities=26% Similarity=0.442 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++|.|+|++||+
T Consensus 115 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred cCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 366667788999999999999999999999999999999999999999999999999887779999999996
No 59
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.4e-26 Score=143.50 Aligned_cols=72 Identities=31% Similarity=0.559 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus 148 ~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 148 VGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred cCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777789999999999999999999999999999999999999999999999999998654 8999999996
No 60
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=6.9e-26 Score=135.93 Aligned_cols=72 Identities=32% Similarity=0.610 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++.+.+||+||+||+++||+++.+|+++||||||+|||+.+++.+.+.+.+++++ +.|+|++||+
T Consensus 85 ~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 85 LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred cCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777788899999999999999999999999999999999999999999999999998766 8999999996
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.4e-26 Score=140.45 Aligned_cols=72 Identities=33% Similarity=0.592 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||+
T Consensus 128 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 128 VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred CCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46677788999999999999999999999999999999999999999999999999998765 8999999996
No 62
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=4.9e-26 Score=149.15 Aligned_cols=72 Identities=35% Similarity=0.633 Sum_probs=68.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||+++.++++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.++.++ |+|||++|||
T Consensus 117 vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd 189 (363)
T TIGR01186 117 VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189 (363)
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47888899999999999999999999999999999999999999999999999999998754 8999999997
No 63
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.9e-26 Score=144.24 Aligned_cols=72 Identities=33% Similarity=0.671 Sum_probs=66.9
Q ss_pred CCCc--chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT--EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~--~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. +..++++.+|||||+||++||+|++.+|+++||||||+|||+.++..+++++.++.++ |.|||++||+
T Consensus 130 ~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 130 VGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred cCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3565 5688999999999999999999999999999999999999999999999999998765 8999999996
No 64
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.5e-26 Score=147.78 Aligned_cols=72 Identities=33% Similarity=0.623 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.++++|+++.++ |.|||++||+
T Consensus 128 ~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 128 VGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777889999999999999999999999999999999999999999999999999998765 8999999996
No 65
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=5.8e-26 Score=143.30 Aligned_cols=72 Identities=32% Similarity=0.504 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++++++.++ |.|||++||+
T Consensus 131 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 131 VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 46777788999999999999999999999999999999999999999999999999998765 8999999996
No 66
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.9e-26 Score=143.89 Aligned_cols=72 Identities=29% Similarity=0.614 Sum_probs=67.4
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|++ ...++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.+.|.|||++||+
T Consensus 132 ~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 132 VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred cCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4675 57899999999999999999999999999999999999999999999999999987679999999996
No 67
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=7.4e-26 Score=139.77 Aligned_cols=72 Identities=25% Similarity=0.375 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++++.+||+|||||+++|++++++|+++||||||+|||+.+++.+.+.+.++.++|.|||++||+
T Consensus 130 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 130 SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 366777888999999999999999999999999999999999999999999999999987678999999996
No 68
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=7e-26 Score=140.56 Aligned_cols=72 Identities=35% Similarity=0.649 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|+|++||+
T Consensus 124 ~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 195 (240)
T PRK09493 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195 (240)
T ss_pred cCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 467777889999999999999999999999999999999999999999999999999987678999999996
No 69
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=7.2e-26 Score=139.19 Aligned_cols=71 Identities=31% Similarity=0.547 Sum_probs=65.9
Q ss_pred CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
++. ...++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 133 ~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 133 GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred CCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 553 4678899999999999999999999999999999999999999999999999998765 8999999996
No 70
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.4e-26 Score=141.64 Aligned_cols=72 Identities=26% Similarity=0.597 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.|.+++++ |.|||++||+
T Consensus 141 ~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred CChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 36667788999999999999999999999999999999999999999999999999998765 8999999996
No 71
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.3e-26 Score=143.61 Aligned_cols=72 Identities=31% Similarity=0.569 Sum_probs=68.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||+
T Consensus 128 ~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 128 VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47778889999999999999999999999999999999999999999999999999998765 9999999996
No 72
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.7e-26 Score=140.50 Aligned_cols=72 Identities=28% Similarity=0.564 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|+|++||+
T Consensus 129 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 200 (242)
T PRK11124 129 LRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200 (242)
T ss_pred cCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 467777899999999999999999999999999999999999999999999999999987678999999996
No 73
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.6e-26 Score=142.97 Aligned_cols=72 Identities=32% Similarity=0.522 Sum_probs=68.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++..||+||+||+++|+|++.+|+++||||||+|||+.++..+++.+++++++|.|||++||+
T Consensus 124 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~ 195 (274)
T PRK13644 124 IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195 (274)
T ss_pred CCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 467778899999999999999999999999999999999999999999999999999987679999999996
No 74
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.93 E-value=8.9e-26 Score=139.25 Aligned_cols=72 Identities=33% Similarity=0.604 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++++.+||+|||||+++|++++.+|+++|+||||+|||+.+++.+.+++.++.++|.|+|++||+
T Consensus 101 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 101 VGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred hCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 366677888999999999999999999999999999999999999999999999999987679999999996
No 75
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.7e-26 Score=141.34 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++|.|||++||+
T Consensus 126 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~ 197 (255)
T PRK11231 126 TRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD 197 (255)
T ss_pred cCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 366777899999999999999999999999999999999999999999999999999987678999999996
No 76
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.2e-26 Score=147.79 Aligned_cols=72 Identities=25% Similarity=0.467 Sum_probs=68.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 124 ~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 124 VDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 46778899999999999999999999999999999999999999999999999999998765 8999999997
No 77
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7e-26 Score=148.52 Aligned_cols=72 Identities=25% Similarity=0.557 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 121 lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 46777889999999999999999999999999999999999999999999999999998765 8999999997
No 78
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=8.7e-26 Score=146.42 Aligned_cols=72 Identities=32% Similarity=0.552 Sum_probs=66.7
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++. ...++++.+|||||+||++||+|++.+|+++|+||||++||+.++..+.++++++.++ |.|+|++|||
T Consensus 148 vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 148 VGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3563 4678999999999999999999999999999999999999999999999999998765 9999999997
No 79
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1e-25 Score=147.14 Aligned_cols=72 Identities=29% Similarity=0.474 Sum_probs=68.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 124 ~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46778899999999999999999999999999999999999999999999999999998765 8999999997
No 80
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.1e-26 Score=137.99 Aligned_cols=71 Identities=35% Similarity=0.710 Sum_probs=66.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++++ +.|+|++||+
T Consensus 118 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 188 (211)
T cd03264 118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHI 188 (211)
T ss_pred CCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 3666777899999999999999999999999999999999999999999999999999875 5899999996
No 81
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=141.63 Aligned_cols=72 Identities=29% Similarity=0.557 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ .|.|||++||+
T Consensus 121 ~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 121 VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4677778899999999999999999999999999999999999999999999999999865 48999999996
No 82
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=1.1e-25 Score=145.49 Aligned_cols=72 Identities=32% Similarity=0.558 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++|||++.+|+++||||||+|||+..++.+.+.++++.++ |.|+|++||+
T Consensus 88 ~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 88 VQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred cCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777889999999999999999999999999999999999999999999999999998765 8999999996
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=1.2e-25 Score=139.25 Aligned_cols=72 Identities=35% Similarity=0.624 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+
T Consensus 120 ~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4667778899999999999999999999999999999999999999999999999999875 58999999996
No 84
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=1.2e-25 Score=148.91 Aligned_cols=72 Identities=26% Similarity=0.492 Sum_probs=68.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++|||||+++|+++||||||+|||+.++..++++++++.++|.|||++||+
T Consensus 127 vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd 198 (402)
T PRK09536 127 TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198 (402)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 467788899999999999999999999999999999999999999999999999999997778999999996
No 85
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=141.20 Aligned_cols=72 Identities=31% Similarity=0.579 Sum_probs=66.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ .|.|||++||+
T Consensus 116 ~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred cCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4666778889999999999999999999999999999999999999999999999999854 58999999996
No 86
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=142.95 Aligned_cols=72 Identities=35% Similarity=0.654 Sum_probs=66.9
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus 131 ~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd 203 (288)
T PRK13643 131 VGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203 (288)
T ss_pred cCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3664 46789999999999999999999999999999999999999999999999999987779999999997
No 87
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=1.1e-25 Score=146.83 Aligned_cols=72 Identities=29% Similarity=0.571 Sum_probs=68.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|+|++||+
T Consensus 119 ~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 119 LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46778889999999999999999999999999999999999999999999999999998765 8999999996
No 88
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.6e-26 Score=145.36 Aligned_cols=67 Identities=28% Similarity=0.515 Sum_probs=64.6
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
..+.||.+|||||+||+.||.|++.+|+++|.||||++||...+.++.++++++++ .|.++|+||||
T Consensus 146 ~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHD 213 (316)
T COG0444 146 RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213 (316)
T ss_pred HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 66899999999999999999999999999999999999999999999999999987 49999999998
No 89
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=141.59 Aligned_cols=72 Identities=31% Similarity=0.662 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|+|++.+|+++|+||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus 130 ~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~ 201 (272)
T PRK15056 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201 (272)
T ss_pred cCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 366677889999999999999999999999999999999999999999999999999987678999999996
No 90
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=1e-25 Score=147.10 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++||||+.+|+++|||||+++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 122 l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd 194 (353)
T TIGR03265 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194 (353)
T ss_pred cCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 47888899999999999999999999999999999999999999999999999999998765 9999999997
No 91
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=146.39 Aligned_cols=72 Identities=28% Similarity=0.539 Sum_probs=68.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 116 ~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 116 LGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred cCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 46778889999999999999999999999999999999999999999999999999998765 8999999997
No 92
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=142.72 Aligned_cols=72 Identities=35% Similarity=0.606 Sum_probs=66.8
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. ...++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.++++++.++ |.|||++||+
T Consensus 132 ~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd 205 (290)
T PRK13634 132 VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205 (290)
T ss_pred CCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4675 5678999999999999999999999999999999999999999999999999998765 8999999997
No 93
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.8e-26 Score=139.44 Aligned_cols=67 Identities=31% Similarity=0.583 Sum_probs=63.0
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..|+.+..||||||||++||||++.+|++++|||||++|||.+...+-+++.+++ +.-||++|||+
T Consensus 141 DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHn 207 (253)
T COG1117 141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHN 207 (253)
T ss_pred HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCC
Confidence 46678889999999999999999999999999999999999999999999999987 47899999996
No 94
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=1.1e-25 Score=138.41 Aligned_cols=72 Identities=35% Similarity=0.647 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||+||+||+++|+|++.+|++++|||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus 112 ~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~ 183 (223)
T TIGR03740 112 VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183 (223)
T ss_pred cCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467778889999999999999999999999999999999999999999999999999987678999999996
No 95
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=6.2e-26 Score=146.35 Aligned_cols=72 Identities=31% Similarity=0.562 Sum_probs=69.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||+.+.+++|.+|||||||||.+||||+.+|++++|||||+.|||--+.++.+.+.++.++ ++||+|+|||
T Consensus 152 VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD 224 (386)
T COG4175 152 VGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD 224 (386)
T ss_pred cCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 48899999999999999999999999999999999999999999999999999999999765 8999999997
No 96
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=144.92 Aligned_cols=72 Identities=33% Similarity=0.544 Sum_probs=66.8
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. ...++++.+|||||+||++||+|++.+|+++|+||||++||+..+..++++|.++.++ |.|+|++|||
T Consensus 141 ~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 141 VGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred CCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3564 4678999999999999999999999999999999999999999999999999998765 9999999997
No 97
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=1.6e-25 Score=137.10 Aligned_cols=72 Identities=28% Similarity=0.636 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus 116 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 116 VGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred cCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777788999999999999999999999999999999999999999999999999998764 8999999996
No 98
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=145.08 Aligned_cols=72 Identities=25% Similarity=0.515 Sum_probs=66.1
Q ss_pred CCCcc---hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTE---YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~---~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||.+ ..++++.+|||||+||++||+||+.+|+++|+||||++||+.++..+.++++++.++ |.|+|++|||
T Consensus 143 ~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 143 VGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred CCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 35543 457899999999999999999999999999999999999999999999999998775 9999999997
No 99
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=148.35 Aligned_cols=72 Identities=32% Similarity=0.558 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|+|||++||+
T Consensus 152 ~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd 224 (400)
T PRK10070 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224 (400)
T ss_pred cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4777888999999999999999999999999999999999999999999999999999865 48999999996
No 100
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=138.60 Aligned_cols=72 Identities=31% Similarity=0.638 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|+|++||+
T Consensus 117 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 117 MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred cCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 46777889999999999999999999999999999999999999999999999999998654 8999999996
No 101
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=2e-25 Score=137.52 Aligned_cols=71 Identities=32% Similarity=0.562 Sum_probs=64.7
Q ss_pred CCCcchhcCc--CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRE--SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~--~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++. +.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.|+++.++ .|||++||+
T Consensus 127 ~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~ 199 (227)
T cd03260 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN 199 (227)
T ss_pred cCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEecc
Confidence 3566666666 5999999999999999999999999999999999999999999999998776 999999996
No 102
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=1.4e-25 Score=140.57 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||++||+|++.+|+++||||||++||+.++..+.++|+++.++ |.|||++||+
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35667788999999999999999999999999999999999999999999999999998764 8999999996
No 103
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=1.3e-25 Score=150.67 Aligned_cols=72 Identities=35% Similarity=0.562 Sum_probs=68.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++||+
T Consensus 123 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 123 FGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred cCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 467777899999999999999999999999999999999999999999999999999987778999999996
No 104
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1.4e-25 Score=147.48 Aligned_cols=72 Identities=28% Similarity=0.537 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..++++.+||||||||+++||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 132 ~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 132 VQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47788899999999999999999999999999999999999999999999999999998765 9999999997
No 105
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=1.3e-25 Score=137.67 Aligned_cols=70 Identities=31% Similarity=0.620 Sum_probs=65.5
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+++.++++.+.|.|+|++||+
T Consensus 122 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 191 (222)
T cd03224 122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191 (222)
T ss_pred hhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556788899999999999999999999999999999999999999999999999987678999999996
No 106
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=150.91 Aligned_cols=72 Identities=29% Similarity=0.443 Sum_probs=68.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||+
T Consensus 133 ~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd 204 (510)
T PRK09700 133 VGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204 (510)
T ss_pred cCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 467777899999999999999999999999999999999999999999999999999987779999999997
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=139.56 Aligned_cols=72 Identities=29% Similarity=0.564 Sum_probs=66.2
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+. .++++.+|||||+||+++|+|++++|+++||||||+|||+.+++.+.++++++++.|.|||++||+
T Consensus 139 ~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred cCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356554 378899999999999999999999999999999999999999999999999987679999999996
No 108
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.4e-25 Score=135.34 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=66.1
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+++++++|.|+|++||+
T Consensus 116 ~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 116 SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred CCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 55566788889999999999999999999999999999999999999999999999987678999999996
No 109
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=141.12 Aligned_cols=72 Identities=32% Similarity=0.619 Sum_probs=66.4
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. ...++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.|.+++++|.|||++||+
T Consensus 132 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 204 (280)
T PRK13649 132 VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204 (280)
T ss_pred cCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3565 35688999999999999999999999999999999999999999999999999987678999999996
No 110
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=2.6e-25 Score=136.77 Aligned_cols=72 Identities=25% Similarity=0.545 Sum_probs=65.9
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+ ..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++||+
T Consensus 136 ~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 136 LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred cCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35654 3578899999999999999999999999999999999999999999999999987678999999996
No 111
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=143.91 Aligned_cols=72 Identities=31% Similarity=0.592 Sum_probs=67.0
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. ...++.+.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus 163 ~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd 235 (320)
T PRK13631 163 MGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235 (320)
T ss_pred cCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3664 56889999999999999999999999999999999999999999999999999987679999999996
No 112
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.4e-25 Score=136.52 Aligned_cols=72 Identities=28% Similarity=0.554 Sum_probs=69.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..+.||..|||||+||++|||||+.+|+++++||||+.|||.-.-++.+.+++++++|+|.+++||.
T Consensus 140 VGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 140 VGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred hCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 478889999999999999999999999999999999999999999999999999999999999999999994
No 113
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=144.59 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=63.8
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
..++++.+|||||+||++||+|++.+|+++|+||||++||+..+..+.++|+++++ .|.|+|++|||
T Consensus 146 ~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56889999999999999999999999999999999999999999999999999976 49999999997
No 114
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-25 Score=141.53 Aligned_cols=72 Identities=31% Similarity=0.584 Sum_probs=68.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+++++.++.++ |.||+++||+
T Consensus 128 ~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 128 VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred cCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 47778889999999999999999999999999999999999999999999999999998765 8999999996
No 115
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=141.01 Aligned_cols=72 Identities=31% Similarity=0.665 Sum_probs=68.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.++.++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.++|.||+++||+
T Consensus 125 ~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~ 196 (275)
T PRK13639 125 VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 (275)
T ss_pred CCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 467778899999999999999999999999999999999999999999999999999987679999999996
No 116
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6.8e-26 Score=147.16 Aligned_cols=72 Identities=26% Similarity=0.525 Sum_probs=69.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..+++|.+|||||||||++|||++++|++++||||+++||...+..+...|+++.++ |.|+|++|||
T Consensus 121 L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD 193 (338)
T COG3839 121 LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193 (338)
T ss_pred cCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 47889999999999999999999999999999999999999999999999999999998765 9999999997
No 117
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=141.61 Aligned_cols=72 Identities=29% Similarity=0.599 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.||+++||+
T Consensus 129 ~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~ 201 (283)
T PRK13636 129 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201 (283)
T ss_pred CCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46777889999999999999999999999999999999999999999999999999998765 8999999996
No 118
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-25 Score=141.46 Aligned_cols=72 Identities=32% Similarity=0.581 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.+++.++.++ |.|||++||+
T Consensus 132 ~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 132 VGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47778889999999999999999999999999999999999999999999999999998764 9999999996
No 119
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=2.8e-25 Score=137.69 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=64.5
Q ss_pred CCc-chhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLT-EYRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+. ...++++. +||||||||+++|++++.+|+++||||||++||+.+++.+.++++++.++|.|||++||+
T Consensus 131 ~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203 (243)
T ss_pred CCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence 554 35677776 599999999999999999999999999999999999999999999987778999999996
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=140.33 Aligned_cols=72 Identities=28% Similarity=0.479 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 135 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 135 VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred cCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 36667788999999999999999999999999999999999999999999999999998765 8999999996
No 121
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=150.51 Aligned_cols=72 Identities=26% Similarity=0.484 Sum_probs=67.5
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. +..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++|++++++|.|||++|||
T Consensus 396 ~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 396 LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred cCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4665 67889999999999999999999999999999999999999999999999999987779999999997
No 122
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=141.56 Aligned_cols=72 Identities=32% Similarity=0.616 Sum_probs=66.9
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+. +..++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.++++++.+ .|.|||++||+
T Consensus 132 ~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 132 LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred cCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4675 577889999999999999999999999999999999999999999999999999875 48999999996
No 123
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2e-25 Score=138.74 Aligned_cols=72 Identities=36% Similarity=0.723 Sum_probs=66.5
Q ss_pred CCCcc--hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTE--YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~--~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+ ..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||+
T Consensus 121 l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 121 VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred cCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 35654 678899999999999999999999999999999999999999999999999998764 8999999996
No 124
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=138.53 Aligned_cols=72 Identities=31% Similarity=0.620 Sum_probs=66.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++++.|.|+|++||+
T Consensus 125 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 125 FHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred cCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 356667788999999999999999999999999999999999999999999999999987678999999996
No 125
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2.6e-25 Score=136.37 Aligned_cols=72 Identities=26% Similarity=0.413 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||+||+||+++|++++.+|+++++||||++||+.+++.+.+++.++.++|.|+|++||+
T Consensus 125 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred cCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 356667789999999999999999999999999999999999999999999999999887778999999996
No 126
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=2.3e-25 Score=137.73 Aligned_cols=68 Identities=29% Similarity=0.560 Sum_probs=64.0
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+..++.+.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 117 ~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 185 (230)
T TIGR02770 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185 (230)
T ss_pred HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4578899999999999999999999999999999999999999999999999998764 8999999996
No 127
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=2.5e-25 Score=138.07 Aligned_cols=71 Identities=31% Similarity=0.520 Sum_probs=66.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|++++|||||+|||+.+++.+++.++++.+ +.|||++||+
T Consensus 131 ~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 201 (242)
T TIGR03411 131 IGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHD 201 (242)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 4677778899999999999999999999999999999999999999999999999999865 7899999996
No 128
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=2.5e-25 Score=138.22 Aligned_cols=72 Identities=31% Similarity=0.552 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++ +.|||++||+
T Consensus 141 ~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 36777788899999999999999999999999999999999999999999999999998764 8999999996
No 129
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=139.86 Aligned_cols=72 Identities=28% Similarity=0.576 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++.+.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.|+++.++ |.|||++||+
T Consensus 140 ~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred cCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 36667788999999999999999999999999999999999999999999999999998754 8999999996
No 130
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=2.4e-25 Score=150.34 Aligned_cols=72 Identities=33% Similarity=0.469 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||++||+.+++.+.++++++.+ .|.|||++|||
T Consensus 156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 4677778899999999999999999999999999999999999999999999999999865 48999999997
No 131
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=2e-25 Score=142.86 Aligned_cols=71 Identities=37% Similarity=0.659 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++..||+|||||+++|+|++.+|+++||||||+|||+.+++.+++.++++++ +.|||++||+
T Consensus 121 ~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~ 191 (301)
T TIGR03522 121 VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHI 191 (301)
T ss_pred CCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 4788888999999999999999999999999999999999999999999999999999864 7999999996
No 132
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-25 Score=150.02 Aligned_cols=72 Identities=28% Similarity=0.509 Sum_probs=67.2
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++. +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus 392 ~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd 464 (506)
T PRK13549 392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE 464 (506)
T ss_pred cCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 3564 46789999999999999999999999999999999999999999999999999988779999999997
No 133
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.7e-25 Score=149.64 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=67.4
Q ss_pred CCC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++ .+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus 383 ~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 455 (501)
T PRK11288 383 LNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD 455 (501)
T ss_pred cCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 456 357899999999999999999999999999999999999999999999999999998789999999997
No 134
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=2.9e-25 Score=139.29 Aligned_cols=72 Identities=28% Similarity=0.497 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 36677788999999999999999999999999999999999999999999999999998765 8999999996
No 135
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=3.1e-25 Score=149.76 Aligned_cols=72 Identities=24% Similarity=0.458 Sum_probs=68.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||+
T Consensus 128 ~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 199 (510)
T PRK15439 128 LGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199 (510)
T ss_pred cCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467777899999999999999999999999999999999999999999999999999987779999999996
No 136
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=2.7e-25 Score=149.60 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus 129 ~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd 200 (501)
T PRK10762 129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR 200 (501)
T ss_pred cCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467777889999999999999999999999999999999999999999999999999987778999999997
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.9e-25 Score=140.09 Aligned_cols=72 Identities=33% Similarity=0.669 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++.+.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++ |.|||++||+
T Consensus 125 ~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 125 LGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred CCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46777889999999999999999999999999999999999999999999999999998765 8999999996
No 138
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.9e-25 Score=149.60 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||+|++.+|+++||||||++||+.++..+.+++.+++++|.|||++||+
T Consensus 131 ~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 131 LKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred cCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 467677889999999999999999999999999999999999999999999999999987779999999997
No 139
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.2e-25 Score=141.04 Aligned_cols=72 Identities=29% Similarity=0.529 Sum_probs=66.1
Q ss_pred CCC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++ .+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus 137 ~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred cCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356 35678899999999999999999999999999999999999999999999999998764 8999999996
No 140
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-25 Score=139.50 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+
T Consensus 131 ~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 131 TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred cCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777789999999999999999999999999999999999999999999999999998764 8999999996
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=3.6e-25 Score=139.37 Aligned_cols=72 Identities=28% Similarity=0.490 Sum_probs=66.5
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. ...++++.+|||||+||+++|+|++++|+++||||||++||+.+++.+.+.++++.++ |.|||++||+
T Consensus 137 ~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~ 210 (265)
T TIGR02769 137 VGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 (265)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3564 5678899999999999999999999999999999999999999999999999998765 8999999996
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.5e-25 Score=137.31 Aligned_cols=72 Identities=31% Similarity=0.614 Sum_probs=66.3
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
++++ +..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++||+
T Consensus 118 ~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3564 4678899999999999999999999999999999999999999999999999998764 8999999996
No 143
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=4.3e-25 Score=138.39 Aligned_cols=72 Identities=31% Similarity=0.560 Sum_probs=66.0
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++. ...++.+.+|||||+||+++|||++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus 138 ~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 138 VEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred cCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3554 3678899999999999999999999999999999999999999999999999998765 8999999996
No 144
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=4.3e-25 Score=138.28 Aligned_cols=72 Identities=29% Similarity=0.509 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++||+
T Consensus 125 ~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (256)
T TIGR03873 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHD 196 (256)
T ss_pred cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356677889999999999999999999999999999999999999999999999999987678999999996
No 145
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.5e-25 Score=145.69 Aligned_cols=72 Identities=28% Similarity=0.528 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 137 l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 137 VHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 46778889999999999999999999999999999999999999999999999999988654 8999999997
No 146
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=3.7e-25 Score=145.83 Aligned_cols=72 Identities=31% Similarity=0.601 Sum_probs=68.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||++|||||+.+|+++||||||++||+..+..+.+.+.++.++ ++|||++|||
T Consensus 152 vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 152 VGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47788889999999999999999999999999999999999999999999999999998765 8999999997
No 147
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=2.9e-25 Score=149.85 Aligned_cols=72 Identities=26% Similarity=0.505 Sum_probs=67.6
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. +..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+.+++++++|.|||++|||
T Consensus 390 ~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd 462 (510)
T PRK15439 390 LNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462 (510)
T ss_pred cCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4665 57889999999999999999999999999999999999999999999999999987779999999997
No 148
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=4.4e-25 Score=137.82 Aligned_cols=72 Identities=29% Similarity=0.554 Sum_probs=66.0
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++. ...++.+.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|+|++||+
T Consensus 135 l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 135 VEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred cCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3564 4678899999999999999999999999999999999999999999999999998654 8999999996
No 149
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=4.1e-25 Score=138.01 Aligned_cols=72 Identities=25% Similarity=0.465 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++.+.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.++++.++ |.|+|++||+
T Consensus 134 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 134 VGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred cCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 46677788899999999999999999999999999999999999999999999999998764 8999999996
No 150
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=4.7e-25 Score=133.58 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=66.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++..++++.+||+||+||+++|+|++.+|+++|+||||+|||+.+++.+.+++++..+.|.|++++||+
T Consensus 111 ~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 182 (195)
T PRK13541 111 FKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182 (195)
T ss_pred cCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 356677888999999999999999999999999999999999999999999999998766678999999996
No 151
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.92 E-value=5.5e-25 Score=137.11 Aligned_cols=67 Identities=33% Similarity=0.591 Sum_probs=63.3
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.++++++.+ +.|||++||+
T Consensus 136 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~ 202 (247)
T TIGR00972 136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHN 202 (247)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecC
Confidence 567889999999999999999999999999999999999999999999999999876 4899999996
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.6e-25 Score=137.78 Aligned_cols=70 Identities=33% Similarity=0.642 Sum_probs=65.0
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+
T Consensus 127 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 127 LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred HHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 4455678899999999999999999999999999999999999999999999999987779999999996
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.1e-25 Score=139.55 Aligned_cols=72 Identities=28% Similarity=0.563 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||++||++++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus 128 ~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~ 200 (277)
T PRK13642 128 VNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 (277)
T ss_pred CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 36777888999999999999999999999999999999999999999999999999998765 9999999996
No 154
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=3.8e-25 Score=135.59 Aligned_cols=71 Identities=51% Similarity=0.921 Sum_probs=66.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|+|++||+
T Consensus 121 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 191 (220)
T cd03263 121 LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHS 191 (220)
T ss_pred cCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCC
Confidence 3666777889999999999999999999999999999999999999999999999999865 5999999996
No 155
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=6.9e-25 Score=136.42 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=61.5
Q ss_pred hhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+. +|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++++.|.|||++||+
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~ 204 (248)
T PRK09580 137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204 (248)
T ss_pred hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4455564 799999999999999999999999999999999999999999999987778999999996
No 156
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.92 E-value=6.1e-25 Score=135.46 Aligned_cols=71 Identities=37% Similarity=0.583 Sum_probs=66.1
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++..++.+.+||+||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.++|.|+|++||+
T Consensus 132 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred cchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45566788899999999999999999999999999999999999999999999999987678999999996
No 157
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.92 E-value=4.6e-25 Score=136.58 Aligned_cols=69 Identities=28% Similarity=0.519 Sum_probs=63.6
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.++++. +|.|||++||+
T Consensus 128 ~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~ 196 (237)
T cd03252 128 YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHR 196 (237)
T ss_pred ccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 3445677899999999999999999999999999999999999999999999999986 48999999996
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.3e-25 Score=139.05 Aligned_cols=72 Identities=26% Similarity=0.568 Sum_probs=67.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.++++++.++ +.|||++||+
T Consensus 130 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 130 VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred cCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 46777889999999999999999999999999999999999999999999999999998765 5999999996
No 159
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=6.1e-25 Score=137.99 Aligned_cols=72 Identities=28% Similarity=0.528 Sum_probs=66.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALI------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
+|+.+..++.+.+|||||+||++||+|++ .+|+++||||||+|||+.+++.+.++++++. +.|.|||++||+
T Consensus 122 ~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 122 VDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred cCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 36777789999999999999999999999 5999999999999999999999999999987 568999999996
No 160
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.9e-25 Score=139.61 Aligned_cols=72 Identities=26% Similarity=0.564 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 131 ~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred CCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46777889999999999999999999999999999999999999999999999999998764 8999999996
No 161
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.92 E-value=6e-25 Score=142.45 Aligned_cols=67 Identities=25% Similarity=0.522 Sum_probs=63.4
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..++++.+|||||+||++||+|++.+|+++|+||||++||+.++..+.+++++++++ |.|+|++|||
T Consensus 154 ~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 221 (330)
T PRK09473 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 (330)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 357799999999999999999999999999999999999999999999999999765 8999999997
No 162
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5e-25 Score=147.96 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++....++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.++++++++.|.|||++||+
T Consensus 122 ~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~ 193 (491)
T PRK10982 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK 193 (491)
T ss_pred cCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 356667788999999999999999999999999999999999999999999999999987779999999996
No 163
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.3e-25 Score=148.22 Aligned_cols=72 Identities=25% Similarity=0.398 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.++.++|.|||++||+
T Consensus 128 ~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 128 LGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred cCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 356666788999999999999999999999999999999999999999999999999987779999999996
No 164
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=7.9e-25 Score=138.04 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus 130 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 130 VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred cCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 36667788999999999999999999999999999999999999999999999999998764 8999999996
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=5.8e-25 Score=138.61 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=65.8
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. ...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+
T Consensus 136 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 136 VGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred cCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 3563 5667889999999999999999999999999999999999999999999999998764 8999999996
No 166
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=5.7e-25 Score=148.03 Aligned_cols=72 Identities=32% Similarity=0.574 Sum_probs=67.3
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. +..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus 382 ~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd 454 (501)
T PRK10762 382 FNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454 (501)
T ss_pred cCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3563 56889999999999999999999999999999999999999999999999999997779999999997
No 167
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.92 E-value=9.8e-25 Score=136.10 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=64.2
Q ss_pred CCc-chhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLT-EYRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+. ...++.+. .|||||+||+++|+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++||+
T Consensus 138 ~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~ 210 (252)
T CHL00131 138 GMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210 (252)
T ss_pred CCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 454 35667776 599999999999999999999999999999999999999999999987678999999996
No 168
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.4e-24 Score=130.80 Aligned_cols=71 Identities=25% Similarity=0.460 Sum_probs=65.8
Q ss_pred CCcc-hhcCcCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.. ..++++.+||+||+||+++|++++.+ |+++|+||||++||+..++.+.+.++++.+.|.|||++||+
T Consensus 75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5544 47889999999999999999999999 99999999999999999999999999987679999999996
No 169
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=4.2e-25 Score=134.11 Aligned_cols=72 Identities=31% Similarity=0.639 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+..+.++.|.+||||||||+++||+++++-++++|||||+.|||.-+.++..++.+++.+ +.|++|+||.
T Consensus 117 vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~ 189 (231)
T COG3840 117 VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189 (231)
T ss_pred hChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 47888999999999999999999999999999999999999999999999999999999865 9999999994
No 170
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=6.7e-25 Score=147.51 Aligned_cols=72 Identities=31% Similarity=0.546 Sum_probs=66.7
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++.+++++|.|||++|||
T Consensus 390 ~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 462 (500)
T TIGR02633 390 LKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE 462 (500)
T ss_pred cCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 3564 35788999999999999999999999999999999999999999999999999988779999999997
No 171
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=1e-24 Score=136.50 Aligned_cols=67 Identities=25% Similarity=0.464 Sum_probs=63.2
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..++++.+|||||+||++||+|++.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus 133 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 133 VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 468899999999999999999999999999999999999999999999999998664 8999999996
No 172
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=7.3e-25 Score=148.28 Aligned_cols=72 Identities=38% Similarity=0.652 Sum_probs=66.9
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+++++++++ |.|||++|||
T Consensus 412 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred cCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 4665 4678999999999999999999999999999999999999999999999999998765 8999999997
No 173
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=6.8e-25 Score=148.43 Aligned_cols=67 Identities=25% Similarity=0.486 Sum_probs=63.7
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..++++.+||||||||++||+|++.+|+++||||||++||+.+++.+.+++++++++ |.|||++|||
T Consensus 149 ~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 149 RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 458899999999999999999999999999999999999999999999999998765 8999999997
No 174
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.6e-25 Score=138.57 Aligned_cols=72 Identities=25% Similarity=0.589 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+++.++..+|||||+|||+|||||+++|++++.|||+++|||.+.+.+++.++++.++ |.|+|+..|+
T Consensus 135 vgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 135 VGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred cCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence 46778888999999999999999999999999999999999999999999999999999764 9999999995
No 175
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=5.8e-25 Score=148.97 Aligned_cols=71 Identities=30% Similarity=0.562 Sum_probs=64.9
Q ss_pred CCcchh--cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 2 GLTEYR--HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~--~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
|+.+.. +++|.+||||||||+.||+|++++|+++|+||||++||+..+.++.++|+++.++ |.++|+||||
T Consensus 141 gl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 141 GLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred CCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 454433 4599999999999999999999999999999999999999999999999999754 9999999997
No 176
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.8e-25 Score=147.32 Aligned_cols=71 Identities=25% Similarity=0.525 Sum_probs=66.1
Q ss_pred CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++. +..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+++.+.++.++|.|||++|||
T Consensus 379 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd 450 (491)
T PRK10982 379 RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450 (491)
T ss_pred CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 453 45688999999999999999999999999999999999999999999999999988779999999997
No 177
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.1e-24 Score=134.81 Aligned_cols=72 Identities=31% Similarity=0.583 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 118 ~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 118 VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46777889999999999999999999999999999999999999999999999999998764 8999999996
No 178
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=9.2e-25 Score=134.23 Aligned_cols=72 Identities=29% Similarity=0.523 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+.+..++++.+||+||+||+++|++++.+|+++||||||+|||+.++..+.+.++++.+ .+.|+|++||+
T Consensus 129 ~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 129 VGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred cCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4677788899999999999999999999999999999999999999999999999999876 48999999996
No 179
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=7.5e-25 Score=135.13 Aligned_cols=69 Identities=33% Similarity=0.586 Sum_probs=64.7
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+++.+++++ |.|+|++||+
T Consensus 122 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 45678899999999999999999999999999999999999999999999999998764 8999999996
No 180
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.6e-25 Score=150.49 Aligned_cols=72 Identities=29% Similarity=0.489 Sum_probs=67.2
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+. ...++++.+||||||||++||+||+.+|+++|+||||++||+..+..+.++|++++++ |.|||++|||
T Consensus 450 ~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd 523 (623)
T PRK10261 450 VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD 523 (623)
T ss_pred cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4664 5688999999999999999999999999999999999999999999999999998765 8999999997
No 181
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=9.2e-25 Score=146.84 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=65.1
Q ss_pred CCcchh-cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYR-HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~-~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+.. ++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||+
T Consensus 129 ~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 129 QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred CCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 555443 56799999999999999999999999999999999999999999999999987779999999997
No 182
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.1e-24 Score=135.07 Aligned_cols=72 Identities=29% Similarity=0.581 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||+||+||+++|+|++.+|+++++||||+|||+.+++.+++.++++..+ |.|++++||+
T Consensus 117 ~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 117 LGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred cCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46777788999999999999999999999999999999999999999999999999998665 8999999996
No 183
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.9e-24 Score=133.86 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=66.0
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+ ..++++.+|||||+||+++|++++.+| +++|+||||+|||+..++.+.+.+++++++|.|+|++||+
T Consensus 124 ~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 124 VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred CCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 35554 578899999999999999999999998 5999999999999999999999999987779999999996
No 184
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.92 E-value=1.4e-24 Score=135.70 Aligned_cols=72 Identities=28% Similarity=0.481 Sum_probs=66.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIG-------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~-------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||+||+||+++|+|++. +|+++||||||+|||+.+++.+.++++++.++|.|||++||+
T Consensus 114 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~ 192 (248)
T PRK03695 114 LGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192 (248)
T ss_pred cCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 366677889999999999999999999998 679999999999999999999999999987678999999996
No 185
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=1.4e-24 Score=133.63 Aligned_cols=70 Identities=29% Similarity=0.490 Sum_probs=65.1
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|++...++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.++++++.+ +.|+|++||+
T Consensus 139 gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 208 (226)
T cd03248 139 GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHR 208 (226)
T ss_pred cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 566677888999999999999999999999999999999999999999999999999764 6899999996
No 186
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=1.1e-24 Score=149.42 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||++||++++.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++|||
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46777889999999999999999999999999999999999999999999999999998764 8999999997
No 187
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=9.3e-25 Score=133.88 Aligned_cols=62 Identities=37% Similarity=0.643 Sum_probs=58.2
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 198 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHR 198 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 4579999999999999999999999999999999999999999999999865 4899999996
No 188
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=135.82 Aligned_cols=67 Identities=31% Similarity=0.556 Sum_probs=62.9
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.++..++++++++.+ +.|||++||+
T Consensus 146 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~ 212 (258)
T PRK14268 146 DRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHN 212 (258)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence 456788999999999999999999999999999999999999999999999999864 7999999996
No 189
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=1.8e-24 Score=133.50 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=65.9
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++. ...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+
T Consensus 124 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3564 4678899999999999999999999999999999999999999999999999998664 8999999996
No 190
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=149.72 Aligned_cols=67 Identities=25% Similarity=0.463 Sum_probs=64.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..++++.+||||||||++||+||+.+|+++||||||++||+..++.+.++++++.++ |.|||++|||
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHd 228 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228 (623)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 578999999999999999999999999999999999999999999999999999765 8999999997
No 191
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=7.9e-25 Score=134.29 Aligned_cols=72 Identities=31% Similarity=0.625 Sum_probs=69.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|++.+.++++..+||||||+|+.|||||+.+|++++|||||+|+||.+...|..+++.++..|..|+++.|+
T Consensus 127 f~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN 198 (243)
T COG1137 127 FHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN 198 (243)
T ss_pred hchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc
Confidence 567889999999999999999999999999999999999999999999999999999999889999999996
No 192
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=1.3e-24 Score=146.82 Aligned_cols=67 Identities=27% Similarity=0.499 Sum_probs=63.8
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++|||
T Consensus 420 ~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 487 (520)
T TIGR03269 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487 (520)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 578999999999999999999999999999999999999999999999999998765 8999999997
No 193
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=133.29 Aligned_cols=69 Identities=26% Similarity=0.484 Sum_probs=62.9
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...++++.+||+|||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++. ++.|||++||+
T Consensus 129 ~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 197 (229)
T cd03254 129 YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHR 197 (229)
T ss_pred ccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 3444566789999999999999999999999999999999999999999999999885 58999999996
No 194
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=9.4e-25 Score=140.15 Aligned_cols=71 Identities=28% Similarity=0.492 Sum_probs=68.1
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.+++..++||.+||||||||+++|||++..|++++||||+++||...+..+..+++++.++ |.|.+++|||
T Consensus 126 qL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD 197 (345)
T COG1118 126 QLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD 197 (345)
T ss_pred cccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCC
Confidence 5678899999999999999999999999999999999999999999999999999999876 9999999997
No 195
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=1.9e-24 Score=133.86 Aligned_cols=68 Identities=28% Similarity=0.504 Sum_probs=62.9
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+...++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+++.++++. +|.|||++||+
T Consensus 130 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~ 197 (238)
T cd03249 130 DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHR 197 (238)
T ss_pred ceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 334567789999999999999999999999999999999999999999999999886 78999999996
No 196
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=133.60 Aligned_cols=70 Identities=30% Similarity=0.527 Sum_probs=64.1
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++...++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus 127 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 196 (234)
T cd03251 127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHR 196 (234)
T ss_pred CcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 34455677899999999999999999999999999999999999999999999999886 48999999996
No 197
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=134.66 Aligned_cols=66 Identities=27% Similarity=0.566 Sum_probs=62.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.++++++.+ +.|||++||+
T Consensus 142 ~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~ 207 (253)
T PRK14242 142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHN 207 (253)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEec
Confidence 45778999999999999999999999999999999999999999999999999854 7899999996
No 198
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2e-24 Score=133.54 Aligned_cols=68 Identities=29% Similarity=0.574 Sum_probs=62.8
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.+ |.|||++||+
T Consensus 128 ~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~ 195 (236)
T cd03253 128 DTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHR 195 (236)
T ss_pred cchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 3445667889999999999999999999999999999999999999999999999876 8999999996
No 199
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=134.80 Aligned_cols=67 Identities=27% Similarity=0.537 Sum_probs=62.8
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||||||||+++||+++.+|+++||||||+|||+.+++.++++|.+++ ++.|||++||+
T Consensus 142 ~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~ 208 (254)
T PRK14273 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHN 208 (254)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 45688899999999999999999999999999999999999999999999999985 47899999996
No 200
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=1.5e-24 Score=145.51 Aligned_cols=72 Identities=26% Similarity=0.481 Sum_probs=66.4
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~h~ 72 (72)
+|+.+ ..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.++|.++++++ .|||++|||
T Consensus 388 ~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 388 LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred cCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 46665 7889999999999999999999999999999999999999999999999999997765 579999997
No 201
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=3.2e-24 Score=135.55 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+.|.|+|++||+
T Consensus 132 ~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred CCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56677888999999999999999999999999999999999999999999999999987679999999996
No 202
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=134.32 Aligned_cols=67 Identities=27% Similarity=0.528 Sum_probs=62.6
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus 138 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~ 204 (250)
T PRK14245 138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHN 204 (250)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 34678899999999999999999999999999999999999999999999999985 47999999996
No 203
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=135.76 Aligned_cols=68 Identities=26% Similarity=0.524 Sum_probs=63.2
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++..++++.+||+|||||+++|+|++.+|+++||||||+|||+.+++.+.+++.++++ +.|||++||+
T Consensus 145 ~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~ 212 (269)
T PRK14259 145 KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHN 212 (269)
T ss_pred hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 3457888999999999999999999999999999999999999999999999999854 7899999996
No 204
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=3.5e-24 Score=135.77 Aligned_cols=72 Identities=26% Similarity=0.444 Sum_probs=66.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEe
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTS 70 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~ 70 (72)
+|+.+..++++.+|||||+||+++|++++ .+|+++||||||+|||+.+++.+.++++++.++ |.|||++|
T Consensus 133 ~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiis 212 (272)
T PRK13547 133 AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV 212 (272)
T ss_pred cCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35666778899999999999999999999 599999999999999999999999999998765 89999999
Q ss_pred cC
Q psy858 71 HR 72 (72)
Q Consensus 71 h~ 72 (72)
|+
T Consensus 213 H~ 214 (272)
T PRK13547 213 HD 214 (272)
T ss_pred CC
Confidence 96
No 205
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.2e-24 Score=133.78 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=62.4
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+|||||+||+++|+|++.+|++++|||||+|||+.+++.+.+.+.++.+ |.|+|++||+
T Consensus 139 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 204 (250)
T PRK14247 139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHF 204 (250)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 56888999999999999999999999999999999999999999999999999854 8999999996
No 206
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=4.1e-24 Score=127.57 Aligned_cols=59 Identities=32% Similarity=0.604 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+++++++|.|+|++||+
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987679999999996
No 207
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=4e-24 Score=132.76 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=66.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++.+.+||+||+||+++|++++.+|++++|||||+|||+.+++.+.+++.++.++ |+|||++||+
T Consensus 118 ~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~ 190 (237)
T TIGR00968 118 VQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD 190 (237)
T ss_pred cCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35666788899999999999999999999999999999999999999999999999998765 8999999996
No 208
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=4.9e-24 Score=134.21 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++.+.+||+||+||+++|++++.+|+++|+||||++||+.+++.+.+.++++.++++|||++||+
T Consensus 127 ~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd 198 (255)
T cd03236 127 LELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198 (255)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 467777889999999999999999999999999999999999999999999999999987778999999996
No 209
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=2.1e-24 Score=146.22 Aligned_cols=71 Identities=32% Similarity=0.566 Sum_probs=66.9
Q ss_pred CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
|+. ++.+++|.+||||||||++|||||+.+|+++++||||+.||+..+..+.++++++.++ |.|++|||||
T Consensus 417 gL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred CCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 443 3789999999999999999999999999999999999999999999999999999876 9999999997
No 210
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.91 E-value=5.3e-24 Score=134.41 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=65.6
Q ss_pred CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
|+. ...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.++ |.|+|++||+
T Consensus 139 gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 139 DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 554 4678899999999999999999999999999999999999999999999999998765 8999999996
No 211
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=5.7e-24 Score=126.21 Aligned_cols=60 Identities=32% Similarity=0.595 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||+||+||+++|+|++.+|+++++||||++||+.+++.+.+.++++.++|.|+|++||+
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 399999999999999999999999999999999999999999999987678999999996
No 212
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=8.8e-25 Score=142.58 Aligned_cols=72 Identities=31% Similarity=0.607 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
++++++.+++|.+|||||+|||++||||+.+|++++||||+++||..-+..+...++++.++ |.|+|++|||
T Consensus 124 V~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD 196 (352)
T COG3842 124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196 (352)
T ss_pred cCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 47888999999999999999999999999999999999999999999999999999998765 9999999997
No 213
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4e-24 Score=134.72 Aligned_cols=67 Identities=30% Similarity=0.580 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.++++++.+ +.|||++||+
T Consensus 156 ~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 222 (268)
T PRK14248 156 DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHN 222 (268)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeC
Confidence 456788999999999999999999999999999999999999999999999999865 6899999996
No 214
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.2e-24 Score=132.99 Aligned_cols=67 Identities=27% Similarity=0.561 Sum_probs=62.8
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||+||+||+++||+++.+|+++||||||+|||+.++..+.++++++. ++.|||++||+
T Consensus 139 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~ 205 (251)
T PRK14249 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHN 205 (251)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 45678999999999999999999999999999999999999999999999999884 58999999996
No 215
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=5.9e-24 Score=130.38 Aligned_cols=66 Identities=29% Similarity=0.479 Sum_probs=59.9
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA--VLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~--~l~~~~~~g~til~~~h~ 72 (72)
.++++.+||+||+||++||++++.+|+++||||||+|||+.+++.+.+ ++..+++.|.|+|++||+
T Consensus 134 ~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~ 201 (218)
T cd03290 134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201 (218)
T ss_pred cccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 456789999999999999999999999999999999999999999998 666655568999999996
No 216
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=133.92 Aligned_cols=66 Identities=27% Similarity=0.563 Sum_probs=62.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.++++++.+ +.|||++||+
T Consensus 156 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~ 221 (267)
T PRK14235 156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHS 221 (267)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcC
Confidence 45778999999999999999999999999999999999999999999999999865 7899999996
No 217
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.4e-24 Score=134.04 Aligned_cols=67 Identities=28% Similarity=0.557 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus 148 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~ 214 (260)
T PRK10744 148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHN 214 (260)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 45678899999999999999999999999999999999999999999999999985 47899999996
No 218
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=4.8e-24 Score=144.82 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=67.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.|.+++++|.|||++||+
T Consensus 131 lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHd 202 (549)
T PRK13545 131 ADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202 (549)
T ss_pred cCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 356677889999999999999999999999999999999999999999999999999987678999999996
No 219
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=133.10 Aligned_cols=67 Identities=30% Similarity=0.566 Sum_probs=62.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++||+
T Consensus 138 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~ 204 (250)
T PRK14240 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHN 204 (250)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeC
Confidence 34578899999999999999999999999999999999999999999999999985 47899999996
No 220
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.9e-24 Score=132.73 Aligned_cols=66 Identities=23% Similarity=0.493 Sum_probs=61.7
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++. +|.|||++||+
T Consensus 142 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~ 207 (251)
T PRK14244 142 RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHS 207 (251)
T ss_pred HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 3567889999999999999999999999999999999999999999999999885 48999999996
No 221
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.7e-24 Score=133.02 Aligned_cols=67 Identities=28% Similarity=0.584 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.++..+.+++.++++ +.|||++||+
T Consensus 140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~ 206 (258)
T PRK14241 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN 206 (258)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 456788999999999999999999999999999999999999999999999999854 6899999996
No 222
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=132.14 Aligned_cols=66 Identities=33% Similarity=0.536 Sum_probs=62.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+|||||+||+++|||++++|+++||||||+|||+.++..+.+.+.++.+ |.|+|++||+
T Consensus 135 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 200 (246)
T PRK14269 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHN 200 (246)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 46778999999999999999999999999999999999999999999999999864 8999999996
No 223
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=132.62 Aligned_cols=67 Identities=30% Similarity=0.558 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++|+||||+|||+.+++.+.+.|+++.+ +.|||++||+
T Consensus 141 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 207 (253)
T PRK14267 141 DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHS 207 (253)
T ss_pred hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECC
Confidence 346788999999999999999999999999999999999999999999999999865 6899999996
No 224
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=132.46 Aligned_cols=67 Identities=28% Similarity=0.509 Sum_probs=62.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+
T Consensus 140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 206 (252)
T PRK14239 140 DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRS 206 (252)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence 346788999999999999999999999999999999999999999999999999864 6899999996
No 225
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.5e-24 Score=134.42 Aligned_cols=67 Identities=25% Similarity=0.507 Sum_probs=62.8
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.++|.++.+ +.|||++||+
T Consensus 153 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~ 219 (274)
T PRK14265 153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHN 219 (274)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 456788999999999999999999999999999999999999999999999999864 7899999996
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=9.9e-24 Score=129.41 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=62.5
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus 129 l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 197 (221)
T cd03244 129 LDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHR 197 (221)
T ss_pred cccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 33344678999999999999999999999999999999999999999999999998754 6899999996
No 227
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.6e-24 Score=131.78 Aligned_cols=67 Identities=28% Similarity=0.563 Sum_probs=62.8
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|+|++||+
T Consensus 139 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~ 205 (251)
T PRK14270 139 DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHN 205 (251)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcC
Confidence 456788999999999999999999999999999999999999999999999999866 6899999996
No 228
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.9e-24 Score=131.79 Aligned_cols=67 Identities=30% Similarity=0.568 Sum_probs=62.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|+|++||+
T Consensus 140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~ 206 (252)
T PRK14272 140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHN 206 (252)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 345788999999999999999999999999999999999999999999999999864 7999999996
No 229
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=125.70 Aligned_cols=59 Identities=51% Similarity=0.905 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+||+||+++|++++.+|+++++||||++||+.+++.+.+.++++.++|.|+|++||+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999987778999999996
No 230
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=132.37 Aligned_cols=68 Identities=28% Similarity=0.533 Sum_probs=63.2
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.++++++ .|.|||++||+
T Consensus 142 ~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~ 210 (261)
T PRK14258 142 HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210 (261)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 346788899999999999999999999999999999999999999999999999865 48999999996
No 231
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=1.3e-23 Score=127.89 Aligned_cols=63 Identities=29% Similarity=0.524 Sum_probs=59.5
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...+||+||+||+++|++++.+|+++||||||++||+.+++.+.+.+.++.+++.|+|++||+
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 446899999999999999999999999999999999999999999999987678999999996
No 232
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=1.1e-23 Score=126.64 Aligned_cols=59 Identities=34% Similarity=0.623 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++|.|+|++||+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987678999999996
No 233
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=131.36 Aligned_cols=67 Identities=31% Similarity=0.554 Sum_probs=62.6
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ +.|+|++||+
T Consensus 140 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 206 (252)
T PRK14255 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS 206 (252)
T ss_pred hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECC
Confidence 456788999999999999999999999999999999999999999999999999865 5899999996
No 234
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.2e-24 Score=134.46 Aligned_cols=67 Identities=24% Similarity=0.546 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||+
T Consensus 172 ~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~ 238 (285)
T PRK14254 172 DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHN 238 (285)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 356788999999999999999999999999999999999999999999999999875 4799999996
No 235
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.3e-23 Score=125.85 Aligned_cols=59 Identities=42% Similarity=0.743 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
||+||+||+++|++++++|++++|||||+|||+.++..+.+++.+++++ |.|++++||+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999998876 8999999996
No 236
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1e-23 Score=133.28 Aligned_cols=67 Identities=31% Similarity=0.581 Sum_probs=62.8
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.+ +.|||++||+
T Consensus 159 ~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~ 225 (271)
T PRK14238 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHN 225 (271)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 456788999999999999999999999999999999999999999999999999865 7999999996
No 237
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=1.4e-23 Score=127.69 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=60.3
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~ 72 (72)
...++++.+||+||+||+++|++++.+|+++|+||||++||+.+++.+.+ ++.+..++|.|||++||+
T Consensus 119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 34566788999999999999999999999999999999999999999988 456665568999999996
No 238
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=131.39 Aligned_cols=67 Identities=31% Similarity=0.584 Sum_probs=62.3
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus 139 ~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~ 205 (251)
T PRK14251 139 DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHN 205 (251)
T ss_pred HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECC
Confidence 345788999999999999999999999999999999999999999999999999854 6899999996
No 239
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1.2e-23 Score=127.07 Aligned_cols=72 Identities=28% Similarity=0.555 Sum_probs=67.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..+-+|.+||||++|||+||||++..|++++.||||.+||..+.+.+.+++-.+.++ |.|.+++|||
T Consensus 134 vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred hCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 46777888899999999999999999999999999999999999999999999999988765 9999999997
No 240
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=1.2e-23 Score=144.35 Aligned_cols=71 Identities=28% Similarity=0.520 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+..++++.+|||||+||++||++++.+|+++||||||++||+..+..+.++++++.+ |.|||++||+
T Consensus 200 l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd 270 (590)
T PRK13409 200 LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHD 270 (590)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4677788999999999999999999999999999999999999999999999999999987 9999999996
No 241
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=131.04 Aligned_cols=66 Identities=35% Similarity=0.635 Sum_probs=62.3
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||+||+||+++|+|++.+|+++||||||+|||+.++..+.+++.++.+ +.|+|++||+
T Consensus 139 ~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~ 204 (250)
T PRK14262 139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204 (250)
T ss_pred HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCC
Confidence 46788999999999999999999999999999999999999999999999999864 7899999996
No 242
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=130.58 Aligned_cols=67 Identities=28% Similarity=0.587 Sum_probs=62.3
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||++||++++.+|+++||||||+|||+.++..+.+++.++.+ +.|||++||+
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 203 (249)
T PRK14253 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHS 203 (249)
T ss_pred HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 345778899999999999999999999999999999999999999999999999865 6899999996
No 243
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.9e-23 Score=126.50 Aligned_cols=60 Identities=32% Similarity=0.580 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|||||+||+++|+|++.+|+++|+||||+|||+.+++.+++.++++.+.|.|+|++||+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~ 167 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 899999999999999999999999999999999999999999999987678999999996
No 244
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=131.12 Aligned_cols=66 Identities=30% Similarity=0.588 Sum_probs=62.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+|||||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+
T Consensus 148 ~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~ 213 (259)
T PRK14274 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHN 213 (259)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence 45788999999999999999999999999999999999999999999999999864 7899999996
No 245
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-23 Score=132.26 Aligned_cols=66 Identities=27% Similarity=0.537 Sum_probs=62.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus 144 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~ 209 (264)
T PRK14243 144 KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN 209 (264)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 46778999999999999999999999999999999999999999999999999865 5899999996
No 246
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=131.59 Aligned_cols=67 Identities=25% Similarity=0.498 Sum_probs=62.8
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||+||+||+++|+|++.+|+++||||||+|||+.++..+.+.+.++++ +.|||++||+
T Consensus 142 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 208 (259)
T PRK14260 142 DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHN 208 (259)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 456788999999999999999999999999999999999999999999999999865 6899999996
No 247
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=133.47 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=62.6
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+|||||+||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus 174 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~ 240 (286)
T PRK14275 174 DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHN 240 (286)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 456788999999999999999999999999999999999999999999999998764 6899999996
No 248
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=2.4e-23 Score=126.26 Aligned_cols=60 Identities=38% Similarity=0.761 Sum_probs=57.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||+||+||+++|+|++.+|+++|+||||+|||+.+++.+.+.++++.++|.|+|++||+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 799999999999999999999999999999999999999999999987679999999996
No 249
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=130.53 Aligned_cols=66 Identities=24% Similarity=0.531 Sum_probs=61.9
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus 141 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~ 206 (252)
T PRK14256 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206 (252)
T ss_pred HhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999865 6899999996
No 250
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=131.81 Aligned_cols=66 Identities=32% Similarity=0.565 Sum_probs=62.3
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||+||+||+++|++++.+|+++||||||+|||+.++..+.+.+.++.+ +.|+|++||+
T Consensus 161 ~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~ 226 (272)
T PRK14236 161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHN 226 (272)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCC
Confidence 46788999999999999999999999999999999999999999999999999865 7899999996
No 251
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.5e-23 Score=126.15 Aligned_cols=71 Identities=28% Similarity=0.566 Sum_probs=67.9
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+.+++|+.|-.|||||+||++||||++.+|+++++||||+.|||.-...+.++|+++...|.|-+++||.
T Consensus 130 rl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthe 200 (242)
T COG4161 130 RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200 (242)
T ss_pred ccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999998889999999994
No 252
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=3.7e-23 Score=130.83 Aligned_cols=72 Identities=28% Similarity=0.446 Sum_probs=66.2
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~---p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.. ..++++.+|||||+||+++|++++.+ |+++||||||+|||+..++.+.+.+.++.++|.|+|++||+
T Consensus 156 vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 156 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred cCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35655 47889999999999999999999996 79999999999999999999999999988779999999996
No 253
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.90 E-value=3.1e-23 Score=126.37 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=60.3
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++.+||+||+||+++||+++.+|+++||||||+|||+.+++.+.+.++++. +|.|+|++||+
T Consensus 120 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~ 183 (207)
T cd03369 120 SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHR 183 (207)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 56788999999999999999999999999999999999999999999999875 48999999996
No 254
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.6e-23 Score=129.68 Aligned_cols=66 Identities=26% Similarity=0.533 Sum_probs=62.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||+||+||+++|++++.+|++++|||||+|||+.++..+.++++++.+ +.|||++||+
T Consensus 139 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~ 204 (250)
T PRK14266 139 KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHN 204 (250)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 45788999999999999999999999999999999999999999999999999854 7899999996
No 255
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=2.9e-23 Score=124.28 Aligned_cols=61 Identities=34% Similarity=0.755 Sum_probs=58.0
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+||+||+||+++|||++.+|+++||||||++||+.+++.+++.+.++. ++.|+|++||+
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 156 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHH 156 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 67899999999999999999999999999999999999999999999875 58999999996
No 256
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=129.99 Aligned_cols=66 Identities=26% Similarity=0.557 Sum_probs=62.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~ 207 (253)
T PRK14261 142 RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHN 207 (253)
T ss_pred HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcC
Confidence 46788999999999999999999999999999999999999999999999999865 6899999996
No 257
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.8e-23 Score=133.26 Aligned_cols=67 Identities=25% Similarity=0.536 Sum_probs=62.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+|||||+||++||+|++++|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~ 258 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHN 258 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence 345788999999999999999999999999999999999999999999999999876 5899999996
No 258
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=2.3e-23 Score=155.91 Aligned_cols=72 Identities=60% Similarity=1.023 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.++.++++.+||||||||+++|+|++.+|++++|||||+|||+.+++.++++|.+++++|+|||++||+
T Consensus 2058 lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~ 2129 (2272)
T TIGR01257 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS 2129 (2272)
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 467788999999999999999999999999999999999999999999999999999987779999999996
No 259
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.5e-23 Score=130.04 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+||+||+||+++|++++++|+++||||||+|||+.++..+.+++.++. ++.|||++||+
T Consensus 155 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~ 221 (267)
T PRK14237 155 DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHN 221 (267)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 35678899999999999999999999999999999999999999999999999985 47899999996
No 260
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=1.8e-23 Score=138.51 Aligned_cols=72 Identities=36% Similarity=0.623 Sum_probs=67.1
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|++ ...++||.++|||||||++||||++.+|++++|||||+.||...+.++.++++++.++ |.+.+|+|||
T Consensus 413 VGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 413 VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred cCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 3564 4789999999999999999999999999999999999999999999999999999764 9999999997
No 261
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=5.8e-23 Score=128.29 Aligned_cols=72 Identities=35% Similarity=0.631 Sum_probs=69.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||.+.++.++.+||+|+|+++.|||||+.+|++++||||.+|+.+.....+.+.|+++++. |.||++|.||
T Consensus 137 vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd 209 (250)
T COG0411 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209 (250)
T ss_pred cCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 47889999999999999999999999999999999999999999999999999999999874 7999999997
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.89 E-value=6.6e-23 Score=121.95 Aligned_cols=60 Identities=37% Similarity=0.625 Sum_probs=56.5
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+||+||+||+++|++++.+|+++||||||++||+.+++.+.+.+.++ +.|+|++||+
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~ 147 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHR 147 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999875 5899999996
No 263
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.8e-23 Score=128.32 Aligned_cols=72 Identities=29% Similarity=0.557 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++-+||||||||+.||||++.+|++++||||+..||.-.++++.+++.++++. |+.++++||+
T Consensus 120 VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ 192 (259)
T COG4525 120 VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192 (259)
T ss_pred hCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 47888889999999999999999999999999999999999999999999999999999765 9999999996
No 264
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.9e-23 Score=129.91 Aligned_cols=66 Identities=26% Similarity=0.479 Sum_probs=61.6
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+.+|||||+||+++||+++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus 156 ~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~ 221 (276)
T PRK14271 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHN 221 (276)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 35678899999999999999999999999999999999999999999999999865 5899999996
No 265
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.2e-23 Score=129.58 Aligned_cols=66 Identities=29% Similarity=0.528 Sum_probs=61.2
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||+||+||+++|||++.+|+++||||||+|||+.++..+++.+.++. ++.|+|++||+
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~ 207 (261)
T PRK14263 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHN 207 (261)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 3456788999999999999999999999999999999999999999999999985 47899999996
No 266
>PLN03211 ABC transporter G-25; Provisional
Probab=99.89 E-value=5e-23 Score=142.74 Aligned_cols=71 Identities=35% Similarity=0.594 Sum_probs=64.4
Q ss_pred CCcchh-----cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYR-----HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~-----~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.+.. ++.++.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++++|+|||+++|+
T Consensus 190 gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~ 265 (659)
T PLN03211 190 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ 265 (659)
T ss_pred CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 555544 34567899999999999999999999999999999999999999999999988779999999996
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.8e-23 Score=122.44 Aligned_cols=58 Identities=36% Similarity=0.743 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+||+||+++|++++.+|+++||||||+|||+.+++.+.+++.++.+ +.|+|++||+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~ 154 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHR 154 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 999999999999999999999999999999999999999999998854 7999999996
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.8e-23 Score=128.54 Aligned_cols=66 Identities=27% Similarity=0.500 Sum_probs=62.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+..||+||+||+++|++++.+|+++++||||+|||+.+++.+.+++.++.+ +.|||++||+
T Consensus 146 ~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~ 211 (257)
T PRK14246 146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHN 211 (257)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECC
Confidence 46788999999999999999999999999999999999999999999999998854 6999999996
No 269
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.9e-23 Score=133.17 Aligned_cols=67 Identities=28% Similarity=0.568 Sum_probs=62.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+||||||||+++|||++.+|+++||||||++||+.+.+.+.+.|+++.+ +.|+|++||+
T Consensus 217 ~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~ 283 (329)
T PRK14257 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHS 283 (329)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 456788999999999999999999999999999999999999999999999998865 7999999996
No 270
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.7e-23 Score=128.98 Aligned_cols=67 Identities=30% Similarity=0.533 Sum_probs=62.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++.+.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+.++.+ +.|||++||+
T Consensus 153 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~ 219 (265)
T PRK14252 153 DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHN 219 (265)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecC
Confidence 456788999999999999999999999999999999999999999999999999865 6899999996
No 271
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.7e-23 Score=133.55 Aligned_cols=72 Identities=26% Similarity=0.535 Sum_probs=69.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..+++|..|||||||||+|+|||.+.|++++||||.++||..-+++++..+..++++ ...|+++||.
T Consensus 116 LGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS 188 (352)
T COG4148 116 LGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188 (352)
T ss_pred hCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecC
Confidence 47889999999999999999999999999999999999999999999999999999999877 8999999995
No 272
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=5.2e-23 Score=154.04 Aligned_cols=71 Identities=46% Similarity=0.854 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+
T Consensus 1049 vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHd 1119 (2272)
T TIGR01257 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHH 1119 (2272)
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence 477888999999999999999999999999999999999999999999999999999985 59999999996
No 273
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=1e-22 Score=122.79 Aligned_cols=59 Identities=22% Similarity=0.443 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~h~ 72 (72)
||+|||||+++|++++.+|+++++||||++||+..++.+.+.+.++.+++ .|++++||+
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987664 999999996
No 274
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=9.6e-23 Score=138.29 Aligned_cols=70 Identities=31% Similarity=0.535 Sum_probs=63.1
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++....+...+||||||||+++|||++++|+++||||||++||+.+++.+.+.+.++...|+|+|++||+
T Consensus 444 l~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~ 513 (544)
T TIGR01842 444 YDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513 (544)
T ss_pred cccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 3444556678899999999999999999999999999999999999999999999876568999999996
No 275
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=9.7e-23 Score=127.87 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=62.1
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...+.++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+.+.+.++. ++.|+|++||+
T Consensus 146 l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~ 214 (257)
T cd03288 146 LDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHR 214 (257)
T ss_pred cCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 4444556778999999999999999999999999999999999999999999998864 48999999996
No 276
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.89 E-value=9.1e-23 Score=139.11 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=59.6
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.......+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHr 543 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQ 543 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 3344567899999999999999999999999999999999999999999998874 58999999995
No 277
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=4.4e-23 Score=129.67 Aligned_cols=71 Identities=31% Similarity=0.574 Sum_probs=67.7
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++..+..+++.+||.|++|++.+..+++++|+++||||||+||||...+.+.+.+.+++++|.|||++||.
T Consensus 119 ~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~ 189 (300)
T COG4152 119 EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189 (300)
T ss_pred cccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecch
Confidence 55677888999999999999999999999999999999999999999999999999999999999999994
No 278
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-22 Score=123.91 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=58.3
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.++++.+||+||+||+++|+|++.+|+++||||||+|||+.+++.+++++.++.++ +.|+++++|
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 46788899999999999999999999999999999999999999999999998765 667666554
No 279
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=4.5e-23 Score=130.31 Aligned_cols=68 Identities=29% Similarity=0.507 Sum_probs=65.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+..++++.+|||||+||++||||++.+|++++.|||++.||...+.++.+++.++.++ |.|++|+|||
T Consensus 101 ~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHD 169 (268)
T COG4608 101 EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD 169 (268)
T ss_pred HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 4789999999999999999999999999999999999999999999999999999875 9999999997
No 280
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.89 E-value=9.8e-23 Score=137.63 Aligned_cols=63 Identities=33% Similarity=0.604 Sum_probs=58.0
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+
T Consensus 466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr 528 (529)
T TIGR02868 466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH 528 (529)
T ss_pred cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 3456799999999999999999999999999999999999999999998753 58999999996
No 281
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1e-22 Score=137.88 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=62.5
Q ss_pred CC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+ .+..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.+.++ +.|||++|||
T Consensus 426 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd 494 (530)
T PRK15064 426 LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHD 494 (530)
T ss_pred CCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 55 35678999999999999999999999999999999999999999999999999875 3599999997
No 282
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=1.1e-22 Score=129.38 Aligned_cols=70 Identities=27% Similarity=0.501 Sum_probs=62.4
Q ss_pred CCcchhcCcCCC-----------CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 2 GLTEYRHRESGR-----------YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 2 ~l~~~~~~~~~~-----------lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
|+.+..++++.. ||+||+||+++|||++.+|+++||||||++||+.+++.+.+.+++.. .++|||++|
T Consensus 116 gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~is 194 (275)
T cd03289 116 GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSE 194 (275)
T ss_pred CCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEE
Confidence 455556666655 99999999999999999999999999999999999999999999864 489999999
Q ss_pred cC
Q psy858 71 HR 72 (72)
Q Consensus 71 h~ 72 (72)
|+
T Consensus 195 H~ 196 (275)
T cd03289 195 HR 196 (275)
T ss_pred CC
Confidence 96
No 283
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=140.53 Aligned_cols=69 Identities=33% Similarity=0.446 Sum_probs=62.6
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. +..++++.+||||||||+++|++|+.+|+++||||||++||+.+...+.+++.++ +.|||+||||
T Consensus 136 lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd 205 (638)
T PRK10636 136 LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHD 205 (638)
T ss_pred CCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 3564 4678899999999999999999999999999999999999999999999988764 5699999997
No 284
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2e-22 Score=136.52 Aligned_cols=68 Identities=28% Similarity=0.407 Sum_probs=60.6
Q ss_pred CCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.+. .++++.+||||||||+++|++++.+|+++||||||++||+.+++.+.+++.+ .|.|||++|||
T Consensus 143 gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd 211 (530)
T PRK15064 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHD 211 (530)
T ss_pred CCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence 45443 3567899999999999999999999999999999999999999999999863 58999999997
No 285
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.8e-22 Score=124.46 Aligned_cols=70 Identities=33% Similarity=0.655 Sum_probs=65.3
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+.+..+++..+|||||||.++|||||+++|++++||||+.||-|.-.+++.+.+++++++ |.||+++.++
T Consensus 126 Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn 196 (237)
T COG0410 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196 (237)
T ss_pred HHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 456788999999999999999999999999999999999999999999999999999876 7899999874
No 286
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.88 E-value=3.6e-22 Score=136.68 Aligned_cols=68 Identities=25% Similarity=0.496 Sum_probs=61.4
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+....+...+||||||||+++|||++++|+++||||||++||+.+++.+.+.+.++. +++|+|++||+
T Consensus 462 ~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~ 529 (585)
T TIGR01192 462 DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHR 529 (585)
T ss_pred cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence 334456678899999999999999999999999999999999999999999998874 58999999996
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.88 E-value=2.5e-22 Score=136.32 Aligned_cols=63 Identities=33% Similarity=0.558 Sum_probs=58.1
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+||||||||+++||+++++|++++|||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus 465 ~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~ 527 (571)
T TIGR02203 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHR 527 (571)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehh
Confidence 3456799999999999999999999999999999999999999999998874 47999999996
No 288
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.3e-22 Score=138.96 Aligned_cols=69 Identities=35% Similarity=0.571 Sum_probs=62.9
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|++. ...++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.|.++ .| |||+||||
T Consensus 417 ~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd 486 (638)
T PRK10636 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHD 486 (638)
T ss_pred cCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCC
Confidence 3554 3678899999999999999999999999999999999999999999999999886 34 99999997
No 289
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.88 E-value=4.1e-22 Score=137.82 Aligned_cols=72 Identities=28% Similarity=0.570 Sum_probs=67.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||+||+||+++||+++++|+++|+||||+|||+.+++.+.++++++.++|.|++++||+
T Consensus 132 lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~ 203 (648)
T PRK10535 132 LGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203 (648)
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 467778899999999999999999999999999999999999999999999999999987679999999996
No 290
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=3.4e-22 Score=136.03 Aligned_cols=69 Identities=26% Similarity=0.440 Sum_probs=62.5
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.. ..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.++|.++. + |||++|||
T Consensus 430 ~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd 499 (552)
T TIGR03719 430 FNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHD 499 (552)
T ss_pred CCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCC
Confidence 35643 5688999999999999999999999999999999999999999999999998862 4 89999997
No 291
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=3.6e-22 Score=135.99 Aligned_cols=63 Identities=32% Similarity=0.555 Sum_probs=58.0
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+||||||||+++|||++++|+++||||||++||+.+...+.+.+.++. +++|+|++||+
T Consensus 476 ~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr 538 (582)
T PRK11176 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHR 538 (582)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 3456799999999999999999999999999999999999999999998864 47999999996
No 292
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=3.1e-22 Score=136.35 Aligned_cols=63 Identities=27% Similarity=0.448 Sum_probs=59.2
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++++.+||||||||++||++++.+|+++||||||++||+.+++.+.++++++ +.|||++||+
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 57889999999999999999999999999999999999999999999999875 2599999997
No 293
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.87 E-value=3e-22 Score=137.89 Aligned_cols=72 Identities=38% Similarity=0.683 Sum_probs=66.1
Q ss_pred CCCcchhcCcCC------CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESG------RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~------~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..|..+. .||||||||++||++++.+|+++++||||+|||+.++..+.+.+++++++|+|+|+++|+
T Consensus 148 lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq 225 (617)
T TIGR00955 148 LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQ 225 (617)
T ss_pred cCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 366677777776 599999999999999999999999999999999999999999999998779999999995
No 294
>PLN03140 ABC transporter G family member; Provisional
Probab=99.87 E-value=4.9e-22 Score=146.05 Aligned_cols=72 Identities=26% Similarity=0.505 Sum_probs=66.7
Q ss_pred CCCcchhcCcC-----CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRES-----GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~-----~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..|+.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++|.|||+++|+
T Consensus 1002 lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq 1078 (1470)
T PLN03140 1002 VELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078 (1470)
T ss_pred CCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36667777776 5899999999999999999999999999999999999999999999998889999999996
No 295
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.87 E-value=5.3e-22 Score=135.55 Aligned_cols=65 Identities=32% Similarity=0.595 Sum_probs=59.0
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus 465 i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr 529 (588)
T PRK13657 465 VGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHR 529 (588)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEec
Confidence 334556799999999999999999999999999999999999999999998864 47999999996
No 296
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=4.3e-22 Score=137.40 Aligned_cols=62 Identities=32% Similarity=0.434 Sum_probs=58.6
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++.+||||||||++||++|+.+|+++||||||++||+.+++.+.++|.++ +.|||+||||
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd 212 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHD 212 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCC
Confidence 7889999999999999999999999999999999999999999999999876 3599999997
No 297
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=4e-22 Score=122.50 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++...++++..||+|||||+++|+|++.+|+++|+|||++++|+.+++.+.+.+.+..+ +.++|++||+
T Consensus 93 ~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~ 162 (213)
T PRK15177 93 QLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHN 162 (213)
T ss_pred ChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECC
Confidence 455667889999999999999999999999999999999999999999999998865443 4689999996
No 298
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.87 E-value=5.1e-22 Score=134.16 Aligned_cols=65 Identities=31% Similarity=0.550 Sum_probs=59.6
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus 452 v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~ 516 (529)
T TIGR02857 452 IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHR 516 (529)
T ss_pred hccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 344567899999999999999999999999999999999999999999998864 58999999996
No 299
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=7.3e-22 Score=121.22 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=63.7
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIG----------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~----------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++..++++.+||+||+||+++|++++. +|+++|+||||++||+.+++.+.+.+.++++++.|++++||+
T Consensus 113 l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~ 192 (213)
T cd03279 113 FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192 (213)
T ss_pred hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 3456788899999999999999999985 578999999999999999999999999987668999999996
No 300
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.6e-22 Score=124.10 Aligned_cols=72 Identities=32% Similarity=0.605 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~h~ 72 (72)
+|+.+.++++..+||-|||||+-||||++.+|.++|||||++|||...++.+.+.+.++... +.++++|||.
T Consensus 159 ~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 159 LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred cchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 46778899999999999999999999999999999999999999999999999999998754 8999999994
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=7.3e-22 Score=134.88 Aligned_cols=65 Identities=25% Similarity=0.436 Sum_probs=59.1
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+
T Consensus 470 i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr 534 (592)
T PRK10790 470 LGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHR 534 (592)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 3345678999999999999999999999999999999999999999999988754 7999999996
No 302
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=7.9e-22 Score=134.53 Aligned_cols=66 Identities=29% Similarity=0.467 Sum_probs=60.2
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+
T Consensus 444 ~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~ 509 (569)
T PRK10789 444 EVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHR 509 (569)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 3445567899999999999999999999999999999999999999999998874 58999999996
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=7e-22 Score=134.64 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=62.4
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+ ..++++.+||||||||+++|++++.+|+++||||||+|||+.+++.+.+.|.++ .| |||++|||
T Consensus 432 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd 501 (556)
T PRK11819 432 FNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHD 501 (556)
T ss_pred CCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECC
Confidence 35643 568899999999999999999999999999999999999999999999999886 24 89999997
No 304
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=6.3e-22 Score=134.72 Aligned_cols=63 Identities=27% Similarity=0.457 Sum_probs=58.9
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++++.+||||||||+++|++++.+|+++||||||++||+.++..+.+.|.++ +.|||++||+
T Consensus 155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd 217 (552)
T TIGR03719 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHD 217 (552)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 57889999999999999999999999999999999999999999999998775 3599999996
No 305
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=1.3e-21 Score=124.82 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=56.3
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l-~~~~~~g~til~~~h~ 72 (72)
+++.+||+||+||+++|++++.+|+++||||||+|||+.+++.+.+.+ ..+. ++.|||++||+
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~ 218 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSK 218 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCC
Confidence 456799999999999999999999999999999999999999998865 4443 57899999996
No 306
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=7.2e-22 Score=137.76 Aligned_cols=66 Identities=32% Similarity=0.556 Sum_probs=60.3
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.+.. .|+|+|+++|+
T Consensus 602 ~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHR 667 (709)
T COG2274 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHR 667 (709)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEcc
Confidence 3445667899999999999999999999999999999999999999999999875 48999999995
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.5e-21 Score=114.69 Aligned_cols=59 Identities=41% Similarity=0.811 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+||+||++++++++.+|+++++||||+|||+.++..+.+.+.++.+.+.|++++||+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987667899999996
No 308
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=7.6e-22 Score=144.59 Aligned_cols=72 Identities=28% Similarity=0.576 Sum_probs=66.6
Q ss_pred CCCcchhcCcCC----CCChHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESG----RYSGGNKRKLSTAMALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~----~lS~G~~qr~~ia~~l~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..|+.+. .||||||||++||++++.+|+ +++|||||+|||+.++..+.+.+++++++|+|||+++|+
T Consensus 885 l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~ 961 (1394)
T TIGR00956 885 LEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ 961 (1394)
T ss_pred cCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 366677788776 799999999999999999997 999999999999999999999999998789999999996
No 309
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=6.2e-22 Score=136.60 Aligned_cols=68 Identities=25% Similarity=0.332 Sum_probs=61.7
Q ss_pred CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++. +..++++.+||||||||+++|++++.+|+++||||||++||+.+++.+.+++.++ +.|||++|||
T Consensus 428 ~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd 496 (635)
T PRK11147 428 LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHD 496 (635)
T ss_pred CCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 453 4578899999999999999999999999999999999999999999999988775 4599999997
No 310
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=1e-21 Score=136.16 Aligned_cols=65 Identities=37% Similarity=0.615 Sum_probs=59.4
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus 595 i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHr 659 (694)
T TIGR03375 595 IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHR 659 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 344567899999999999999999999999999999999999999999998875 47999999996
No 311
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.86 E-value=4.9e-22 Score=131.76 Aligned_cols=68 Identities=28% Similarity=0.518 Sum_probs=64.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
...+++|.+||||||||+.||.|++++|+++|.||||+.||...+.+|.++++++.++ |.+++++|||
T Consensus 149 ~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 149 KRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred hhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc
Confidence 3567899999999999999999999999999999999999999999999999999766 9999999997
No 312
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.86 E-value=1.6e-21 Score=113.90 Aligned_cols=59 Identities=36% Similarity=0.507 Sum_probs=54.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+||+||+||+++|++++++|+++++||||++||+.++..+.+.++++ +.|++++||+
T Consensus 68 ~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~ 126 (144)
T cd03221 68 FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHD 126 (144)
T ss_pred EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 3449999999999999999999999999999999999999999999875 4699999996
No 313
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=8.4e-22 Score=134.07 Aligned_cols=67 Identities=34% Similarity=0.557 Sum_probs=61.2
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.+. ++++.+||||||.|+++|++|..+|++++|||||+.||..+...+-+.|.++ .| |+|+||||
T Consensus 143 g~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD 209 (530)
T COG0488 143 GFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD 209 (530)
T ss_pred CCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC
Confidence 44444 8899999999999999999999999999999999999999999999999764 46 99999997
No 314
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=1.5e-21 Score=133.38 Aligned_cols=64 Identities=33% Similarity=0.653 Sum_probs=59.2
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr 533 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHR 533 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 34667899999999999999999999999999999999999999999998875 48999999995
No 315
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=1.5e-21 Score=135.21 Aligned_cols=62 Identities=27% Similarity=0.490 Sum_probs=56.8
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++ ++|+|++||+
T Consensus 583 ge~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr 644 (686)
T TIGR03797 583 SEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHR 644 (686)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecC
Confidence 3445789999999999999999999999999999999999999999998775 5799999995
No 316
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=1.3e-21 Score=135.88 Aligned_cols=64 Identities=30% Similarity=0.514 Sum_probs=57.9
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.+ .++|+|++||+
T Consensus 608 ~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHr 671 (710)
T TIGR03796 608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHR 671 (710)
T ss_pred eeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecC
Confidence 33445678999999999999999999999999999999999999999999875 48999999995
No 317
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.86 E-value=1.7e-21 Score=118.82 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=60.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||+|||||+++|++++ .+|+++++||||+|||+..+..+.+.++++.+ +.+||++||+
T Consensus 105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~ 175 (197)
T cd03278 105 GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHR 175 (197)
T ss_pred CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence 3467789999999999999999987 46799999999999999999999999999865 7899999996
No 318
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=1.4e-21 Score=136.61 Aligned_cols=68 Identities=29% Similarity=0.443 Sum_probs=62.0
Q ss_pred CCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+. +..++++.+||||||||++||++++.+|+++||||||++||+.++..+.++++++ +.|||++|||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd 400 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHA 400 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 443 4567889999999999999999999999999999999999999999999999775 6799999997
No 319
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=1.9e-21 Score=134.93 Aligned_cols=69 Identities=26% Similarity=0.510 Sum_probs=61.7
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++........+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+
T Consensus 583 l~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 651 (694)
T TIGR01846 583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHR 651 (694)
T ss_pred cCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 3444445677899999999999999999999999999999999999999999999874 58999999996
No 320
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=1.5e-21 Score=139.12 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=66.9
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||... .++++.+|||||+||+.||++|.++| +++||||||+|||+..++.+.++|+++++.|.|||+++|+
T Consensus 476 vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 476 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred cccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 466554 68999999999999999999999997 8999999999999999999999999998789999999996
No 321
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-21 Score=131.99 Aligned_cols=69 Identities=28% Similarity=0.490 Sum_probs=61.4
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.........|||||+||+++|||+.++++++++||||++||.++.+.+.+.+.++.+ ++|++++||+
T Consensus 446 Ldt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHr 514 (559)
T COG4988 446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHR 514 (559)
T ss_pred ccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcC
Confidence 33344455667999999999999999999999999999999999999999999999875 6999999996
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=1.9e-21 Score=135.92 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=61.4
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. ...++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.+.+.++ .| |||++|||
T Consensus 614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd 683 (718)
T PLN03073 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHD 683 (718)
T ss_pred CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECC
Confidence 4565 3578899999999999999999999999999999999999999999988887654 34 99999997
No 323
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.86 E-value=1.9e-21 Score=135.07 Aligned_cols=64 Identities=31% Similarity=0.554 Sum_probs=58.3
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.++ .++|+|++||+
T Consensus 605 i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr 668 (708)
T TIGR01193 605 LSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHR 668 (708)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecc
Confidence 34456789999999999999999999999999999999999999999999874 47899999995
No 324
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=2.3e-21 Score=131.88 Aligned_cols=64 Identities=28% Similarity=0.536 Sum_probs=58.9
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.....+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. .++|+|++||+
T Consensus 471 ~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~ 534 (576)
T TIGR02204 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHR 534 (576)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 34567899999999999999999999999999999999999999999999875 48999999995
No 325
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=2.7e-21 Score=137.64 Aligned_cols=72 Identities=26% Similarity=0.489 Sum_probs=66.2
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||... .++++.+|||||+||+.+|++++++| +++||||||+|||+...+.+.++++++++.|.|||+++|+
T Consensus 474 vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 474 VGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred ccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 355543 68899999999999999999999986 8999999999999999999999999998889999999996
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=2.4e-21 Score=142.45 Aligned_cols=65 Identities=28% Similarity=0.500 Sum_probs=60.9
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
.+.+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++.+ .|+|+|++||+
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHr 639 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 456789999999999999999999999999999999999999999999999865 48999999996
No 327
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.85 E-value=2.5e-21 Score=142.37 Aligned_cols=65 Identities=31% Similarity=0.509 Sum_probs=59.3
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
.....+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|.++. ..++|+|+|+|+
T Consensus 1353 Ge~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1353 GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 34556799999999999999999999999999999999999999999999875 358999999995
No 328
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.85 E-value=3.2e-21 Score=133.65 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=55.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+||||||||+++|||++++|+++||||||++||+...+.+.+.+++ .|.|+|++||+
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~ 638 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHR 638 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCc
Confidence 478999999999999999999999999999999999999999988865 38999999996
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.85 E-value=5.5e-21 Score=130.21 Aligned_cols=61 Identities=25% Similarity=0.507 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS-QIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~-~~~~~g~til~~~h~ 72 (72)
.+||||||||+++|||++.+|+++||||||++||+.+.+.+.+.+. .+...|+|+|++||+
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 6799999999999999999999999999999999999999988654 444568999999996
No 330
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=5.7e-21 Score=118.55 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=59.3
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||+||+||+++|++++. +|+++++||||++||+..++.+++.+.++.+ +.++++++|+
T Consensus 151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~ 220 (243)
T cd03272 151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR 220 (243)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 4567899999999999999999973 5899999999999999999999999998755 7888888884
No 331
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=7.8e-21 Score=118.93 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=61.2
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++++.+||+||+||+++|++++ .+|+++++||||++||+..++.+.+.++++. +|.++|++||+
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~ 228 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK 228 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 4567889999999999999999998 5789999999999999999999999999875 48899999995
No 332
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=2.8e-21 Score=141.66 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=64.9
Q ss_pred CCCcchhcCc-----CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRE-----SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~-----~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..|++ ++.||||||||++||++++.+|+++++||||+|||+.++..+.+.|++++++ |.|+|+++|+
T Consensus 192 lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq 269 (1394)
T TIGR00956 192 YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQ 269 (1394)
T ss_pred cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4666666654 5679999999999999999999999999999999999999999999999764 8999999996
No 333
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=6.7e-21 Score=129.46 Aligned_cols=62 Identities=29% Similarity=0.472 Sum_probs=56.9
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
..+||||||||+++|||++++|+++||||||++||+.+.+.+.+.+.+..+ .++|+|++||+
T Consensus 447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~ 509 (547)
T PRK10522 447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509 (547)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 458999999999999999999999999999999999999999998876543 58999999995
No 334
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.85 E-value=6.3e-21 Score=129.86 Aligned_cols=66 Identities=29% Similarity=0.535 Sum_probs=59.4
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.......+||||||||++||||++++|++++|||||+++|+.+.+.+.+.+.++. +++|+++++|+
T Consensus 458 ~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHR 523 (567)
T COG1132 458 IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHR 523 (567)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEecc
Confidence 3344556899999999999999999999999999999999999999999999776 57899999995
No 335
>KOG0061|consensus
Probab=99.85 E-value=5e-21 Score=132.03 Aligned_cols=72 Identities=35% Similarity=0.711 Sum_probs=67.2
Q ss_pred CCCcchhcCcCC-----CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESG-----RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~-----~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+++|..++ .+|||||||++||.-++.+|.++++||||+|||......+.+.+++++++|+|||++-|.
T Consensus 153 LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 153 LGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQ 229 (613)
T ss_pred cCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 467778888886 599999999999999999999999999999999999999999999999889999999984
No 336
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=7.5e-21 Score=115.62 Aligned_cols=67 Identities=33% Similarity=0.581 Sum_probs=63.6
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..|..|+.+||||+||+.|||.++..|++++|||||.|||...+.++.++++.+..+ |.+++++|||
T Consensus 144 RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHD 211 (258)
T COG4107 144 RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEech
Confidence 457789999999999999999999999999999999999999999999999999766 9999999997
No 337
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.84 E-value=6.6e-21 Score=132.77 Aligned_cols=63 Identities=29% Similarity=0.507 Sum_probs=54.9
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||+++|||++++|+++||||||++||+.+.+.+.+ .. ...++|+|++||+
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHr 673 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHR 673 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEecc
Confidence 344557899999999999999999999999999999999999998888 22 2358999999996
No 338
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.1e-20 Score=115.26 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=61.1
Q ss_pred chhcCcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT---GQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~---g~til~~~h~ 72 (72)
+..++++.+||+|||||+++++++ +.+|+++++||||+|+|+..+..+.+++.++.++ +.+|++++|+
T Consensus 101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 456789999999999999999999 5899999999999999999999999999987543 3689999995
No 339
>KOG0055|consensus
Probab=99.84 E-value=5.7e-21 Score=137.60 Aligned_cols=62 Identities=31% Similarity=0.561 Sum_probs=57.2
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.|.+.. .|+|.|+++|+
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHR 547 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHR 547 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeee
Confidence 345699999999999999999999999999999999999999999998754 58999999995
No 340
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.2e-21 Score=128.72 Aligned_cols=68 Identities=38% Similarity=0.713 Sum_probs=61.4
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+.-...|||||+||+++||++.++.+++||||||.|||+.+.+++.+.+.+.. +|+|++++||+
T Consensus 465 ~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHr 532 (573)
T COG4987 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHR 532 (573)
T ss_pred hchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecc
Confidence 334555677899999999999999999999999999999999999999999998865 49999999995
No 341
>KOG0059|consensus
Probab=99.84 E-value=5.2e-21 Score=135.92 Aligned_cols=72 Identities=50% Similarity=1.008 Sum_probs=68.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.++++++++.+|||+|+|+++|.|++.+|++++|||||+|+||.+++.+|+++.+++++|+++|++||.
T Consensus 686 ~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs 757 (885)
T KOG0059|consen 686 VGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS 757 (885)
T ss_pred cCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 478889999999999999999999999999999999999999999999999999999998887799999995
No 342
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.84 E-value=1.5e-20 Score=115.07 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=60.9
Q ss_pred hcCcCCCCChHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CceEEEEecC
Q psy858 7 RHRESGRYSGGNKRK------LSTAMALIGDPPLVFLDEPTSGVDPISRH-RLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr------~~ia~~l~~~p~~lllDEP~~gld~~~~~-~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.++++.+||+||+|| ++++++++.+|+++++|||+++||+..++ .+.+++.++.++ |.++|++||+
T Consensus 109 ~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 109 LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 367889999999996 78999999999999999999999999999 999999998766 8899999996
No 343
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.8e-20 Score=126.46 Aligned_cols=67 Identities=27% Similarity=0.402 Sum_probs=64.7
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.++.+||.||||.|+||+|+..+++++||||||+.|+....+.+++++++++++|.+|||+||.
T Consensus 138 ~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr 204 (500)
T COG1129 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204 (500)
T ss_pred ChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3788999999999999999999999999999999999999999999999999999999999999995
No 344
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=9.8e-21 Score=118.41 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=59.8
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGD----PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~----p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++.+||+||+||++++++++.+ |+++|+||||++||+..+..+.+.+.++.++|.++|++||+
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 455689999999999999999864 89999999999999999999999999987668999999996
No 345
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.83 E-value=2.6e-20 Score=138.15 Aligned_cols=72 Identities=28% Similarity=0.512 Sum_probs=66.9
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|++.. .++.+.+|||||+||+.||+++..+| +++||||||+|||+..++.+.++|+++++.|.|||+++||
T Consensus 463 vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd 537 (1809)
T PRK00635 463 LGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD 537 (1809)
T ss_pred ccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 356554 58899999999999999999999999 8999999999999999999999999998789999999997
No 346
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=3.7e-20 Score=132.14 Aligned_cols=71 Identities=28% Similarity=0.439 Sum_probs=65.9
Q ss_pred CCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.. ..++++.+|||||+||+.+|++++.+| +++||||||+|||+..++.+.+.+.++.+.|.|||+++|+
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 5543 468899999999999999999999999 9999999999999999999999999988779999999996
No 347
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=2.1e-20 Score=118.98 Aligned_cols=72 Identities=26% Similarity=0.454 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++++..+.+++.||-|||.|+.+|.+|+++|++++|||||-|||..++..+.++++++.+ ++.||+++||+
T Consensus 144 Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~ 216 (325)
T COG4586 144 LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216 (325)
T ss_pred hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecc
Confidence 3677888999999999999999999999999999999999999999999999999999975 49999999996
No 348
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=5e-20 Score=113.44 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=61.6
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+..++++..||+||+||+++|++++. +|+++++||||+|||+.++..+++.++++. ++.+++++||+
T Consensus 116 ~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~ 189 (212)
T cd03274 116 QMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLR 189 (212)
T ss_pred ccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECc
Confidence 45566778899999999999999999974 579999999999999999999999999975 46788888885
No 349
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=124.47 Aligned_cols=71 Identities=25% Similarity=0.478 Sum_probs=67.3
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|++=..++++.+||-|+|||+.|.++|+++++++||||||+-|.|...+.++.+++.++++|+|||++||.
T Consensus 129 Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK 199 (501)
T COG3845 129 GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199 (501)
T ss_pred CCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55556788999999999999999999999999999999999999999999999999999999999999994
No 350
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=4.7e-20 Score=136.79 Aligned_cols=72 Identities=32% Similarity=0.529 Sum_probs=66.7
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALI---GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~---~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+... .++++.+|||||+||+++|++++ .+|+++||||||+|||+..++.+.+++.+++++|.|||++||+
T Consensus 796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHd 871 (1809)
T PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHN 871 (1809)
T ss_pred cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 466654 68999999999999999999998 6999999999999999999999999999998789999999996
No 351
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2.5e-20 Score=125.79 Aligned_cols=67 Identities=30% Similarity=0.555 Sum_probs=63.3
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.+.++.+||||+|||+.||++|..+|+++||||||.|+|.-++.+|+.++++++++|.+||++|.+
T Consensus 394 s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE 460 (500)
T COG1129 394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE 460 (500)
T ss_pred CccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4557899999999999999999999999999999999999999999999999999999999999864
No 352
>KOG0055|consensus
Probab=99.82 E-value=2.5e-20 Score=134.34 Aligned_cols=66 Identities=27% Similarity=0.486 Sum_probs=60.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..-.+..+||||||||+|||||++++|+++||||.|+.||..+.+.+.+.|.+.+ +|+|+|++.|.
T Consensus 1119 ~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1119 RVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHR 1184 (1228)
T ss_pred ccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecc
Confidence 3444567899999999999999999999999999999999999999999998864 69999999995
No 353
>KOG0058|consensus
Probab=99.82 E-value=2.6e-20 Score=128.96 Aligned_cols=63 Identities=30% Similarity=0.578 Sum_probs=58.2
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+..+||||||||++|||||+++|+++||||.|+.||..+...+.+.+.+..+ ++|||+|.|.
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHR 662 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHR 662 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehh
Confidence 45568999999999999999999999999999999999999999999988764 6999999994
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=6.5e-20 Score=135.16 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=60.9
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++........+||||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. +++|+|+|+|+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHR 1429 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHR 1429 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 3334445567899999999999999999999999999999999999999999998864 48999999995
No 355
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1e-19 Score=129.70 Aligned_cols=72 Identities=28% Similarity=0.437 Sum_probs=65.6
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~---~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+||.. ..++++.+|||||+||+++|++|+. +|+++||||||+|||+..++.+.+.+.++.+.|.|||+++|+
T Consensus 815 ~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 815 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred cCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35643 4688999999999999999999997 599999999999999999999999999998779999999996
No 356
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.2e-20 Score=110.83 Aligned_cols=72 Identities=28% Similarity=0.452 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+....|.++.+||.|||+|+++||..++.++++|||||+++||......+-.++......|..|+.+||.
T Consensus 118 vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 118 VGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred cCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 578889999999999999999999999999999999999999999999999999999988889999999995
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=3e-20 Score=136.79 Aligned_cols=72 Identities=24% Similarity=0.453 Sum_probs=64.6
Q ss_pred CCCcchh-----cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYR-----HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~-----~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+||++.. ++.++.+|||||||++||++++.+|+++++||||+|||+.++..+.+.++++++ .|.|+|+++|+
T Consensus 319 lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hq 396 (1470)
T PLN03140 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396 (1470)
T ss_pred cCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3565544 556789999999999999999999999999999999999999999999999976 48999999995
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.81 E-value=1.4e-19 Score=134.12 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=61.1
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++........+||||||||++||||++++|+++||||||+++|..+.+.+.+.|++.. +++|+|+|+|+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHR 1432 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHR 1432 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 3334444567899999999999999999999999999999999999999999999864 48999999995
No 359
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=1.9e-19 Score=132.92 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=60.1
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+........+||||||||+++|||++++|+++||||||+++|..+.+.+.+.|++.. +++|+|+|+|+
T Consensus 1412 dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHR 1479 (1522)
T TIGR00957 1412 DHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHR 1479 (1522)
T ss_pred CceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 333344557899999999999999999999999999999999999999999998754 48999999995
No 360
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.9e-20 Score=113.31 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..+++..+||||||||.-+|+.++++.+.++||||.++||..-...++++++++.++ |+||+++-||
T Consensus 123 l~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD 195 (252)
T COG4604 123 LHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195 (252)
T ss_pred hcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 46778899999999999999999999999999999999999999999999999999999877 9999999997
No 361
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=108.92 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=63.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
...++++.+|||||+||++++|.|.-.|++++|||||+.||+..++.+-++|..+. .+.++++.+|||
T Consensus 125 ~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd 193 (223)
T COG4619 125 SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193 (223)
T ss_pred hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecC
Confidence 35678899999999999999999999999999999999999999999999999986 568999999997
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.80 E-value=2.6e-19 Score=132.42 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=59.1
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...++++.+||||||||+++|||++++|+++||||||++||+...+.+.+.+......|+|+|++||+
T Consensus 772 ~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~ 841 (1560)
T PTZ00243 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ 841 (1560)
T ss_pred chHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 4445567889999999999999999999999999999999999999888876432222358999999996
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=99.80 E-value=2.9e-19 Score=131.77 Aligned_cols=63 Identities=24% Similarity=0.448 Sum_probs=54.8
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~~g~til~~~h~ 72 (72)
....+||||||||+++|||++++|+++||||||++||+...+.+.+. +... ..++|+|++||+
T Consensus 736 e~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~ 799 (1495)
T PLN03232 736 ERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQ 799 (1495)
T ss_pred CCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECC
Confidence 34567999999999999999999999999999999999999988665 4443 358999999995
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=3e-19 Score=131.85 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=59.1
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--QKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~--~~~g~til~~~h~ 72 (72)
..++..+||||||||+++|||++++|++++|||||++||+...+.+.+.+... ...++|+|++||+
T Consensus 754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~ 821 (1522)
T TIGR00957 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG 821 (1522)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCC
Confidence 45667899999999999999999999999999999999999999999988653 2347999999996
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=6.3e-19 Score=130.02 Aligned_cols=63 Identities=24% Similarity=0.454 Sum_probs=57.7
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+||||||||+++|||++++|+++||||||+++|..+.+.+.+.|++.. .++|||+++|+
T Consensus 1349 e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHR 1411 (1490)
T TIGR01271 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHR 1411 (1490)
T ss_pred cCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 3445799999999999999999999999999999999999999999998854 47999999995
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=7.8e-19 Score=129.53 Aligned_cols=64 Identities=22% Similarity=0.430 Sum_probs=57.5
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~~g~til~~~h~ 72 (72)
..++.+||||||||+++|||++++|+++||||||++||+..++.+.+. +..+. +|+|+|++||+
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~ 607 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSK 607 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCC
Confidence 345789999999999999999999999999999999999999999975 55554 48999999996
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=7.3e-19 Score=130.05 Aligned_cols=63 Identities=22% Similarity=0.433 Sum_probs=57.4
Q ss_pred CcCCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~-p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+||||||||++||||++++ |+++||||||++||+.+.+.+.+.|++.. .++|+|+|+|+
T Consensus 1441 e~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHR 1504 (1560)
T PTZ00243 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHR 1504 (1560)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 44578999999999999999995 89999999999999999999999998754 47999999995
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.78 E-value=8.3e-19 Score=130.08 Aligned_cols=64 Identities=22% Similarity=0.405 Sum_probs=55.3
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~ 72 (72)
.....+||||||||+++|||++++|+++||||||++||+...+.+.+ .+.... .++|+|++||+
T Consensus 735 Ge~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~ 799 (1622)
T PLN03130 735 GERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQ 799 (1622)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECC
Confidence 34566899999999999999999999999999999999999888764 455443 58999999995
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=6.6e-19 Score=120.02 Aligned_cols=65 Identities=35% Similarity=0.478 Sum_probs=59.9
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+...+++..||||||.|+.+|+.+..+|.++||||||+.||..+.+.+.+.|..+ ..|||+||||
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD 495 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD 495 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 3457899999999999999999999999999999999999999999999998764 4599999997
No 370
>KOG0057|consensus
Probab=99.78 E-value=5.7e-19 Score=119.82 Aligned_cols=65 Identities=28% Similarity=0.542 Sum_probs=59.1
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++...||||||||++++||++.+|+++++||||+.||..+.+.+.+.+.+. ..++|+|++.|+
T Consensus 481 VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~ 545 (591)
T KOG0057|consen 481 VGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHR 545 (591)
T ss_pred HhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEec
Confidence 34456779999999999999999999999999999999999999999999883 458999999996
No 371
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=2e-18 Score=104.01 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+||+||++++++++ .+|+++++|||++++|+..++.+.+.+.++.+.|.++|++||+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 9999999999999986 6899999999999999999999999999987668999999996
No 372
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=116.26 Aligned_cols=62 Identities=37% Similarity=0.603 Sum_probs=59.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...||||||||+++|||+..+|.+++||||-++||......+.+.|...+++|.|+++++|.
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR 531 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999899999999995
No 373
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=7.4e-19 Score=104.77 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=65.4
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~-~~~g~til~~~h~ 72 (72)
|++...++.|.++|||||.|+++-|+++..|+.++|||||+.||..-+.++.++.-.- ++.|..++++|||
T Consensus 123 gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 123 GLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 6778889999999999999999999999999999999999999999999999987654 4459999999997
No 374
>KOG0062|consensus
Probab=99.77 E-value=1.4e-18 Score=117.37 Aligned_cols=65 Identities=31% Similarity=0.430 Sum_probs=59.3
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+...+++++||||+|-|+++|||+..+|++++|||||+.||..+...+-+.|... ..|+|+||||
T Consensus 190 emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD 254 (582)
T KOG0062|consen 190 EMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD 254 (582)
T ss_pred HHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc
Confidence 4667789999999999999999999999999999999999999999888887653 4799999997
No 375
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=2.9e-18 Score=105.72 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=57.9
Q ss_pred hhcCcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-ceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G-QSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g-~til~~~h~ 72 (72)
..+..+.+||+||||++.++.++ +.+|+++++||||++||+..+..+.+.+.+..++ | .+++++||+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~ 191 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPK 191 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchh
Confidence 45667889999999998877554 5899999999999999999999999999998765 5 579999985
No 376
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.7e-18 Score=107.54 Aligned_cols=72 Identities=26% Similarity=0.462 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..+.++.-|||||||-++++.|..+.|++++|||.|++|||...+.+++...++.++ +.|.+||||+
T Consensus 136 lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn 208 (263)
T COG1101 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208 (263)
T ss_pred cchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence 36788899999999999999999999999999999999999999999999999999998765 8999999996
No 377
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=9.4e-19 Score=107.52 Aligned_cols=70 Identities=31% Similarity=0.493 Sum_probs=66.3
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.+.++..+..||.|||||+.|++.++++|+++++|||++|+.....+...++++.++. .++|+++.||
T Consensus 136 gL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD 205 (249)
T COG4674 136 GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD 205 (249)
T ss_pred ccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc
Confidence 677888999999999999999999999999999999999999999999999999999864 7999999997
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.5e-18 Score=106.02 Aligned_cols=71 Identities=28% Similarity=0.514 Sum_probs=64.9
Q ss_pred CCcc-hhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTE-YRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~-~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++ +.++++. .+|||+|||..|+++++.+|+++|||||-||||..+-+.+.+.+..++++|.+++++||.
T Consensus 131 ~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred CCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 4443 6777766 599999999999999999999999999999999999999999999999889999999994
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.76 E-value=2e-18 Score=115.98 Aligned_cols=72 Identities=28% Similarity=0.509 Sum_probs=68.9
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++|++..++.+.+||||+-||++||.++.++.+++++|||++.||...+-.....++++.+.+++|+++.||
T Consensus 201 l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD 272 (591)
T COG1245 201 LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272 (591)
T ss_pred hcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence 467888999999999999999999999999999999999999999999999999999998879999999997
No 380
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=7e-18 Score=121.40 Aligned_cols=68 Identities=28% Similarity=0.260 Sum_probs=62.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIG----------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~----------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+|||||++++++|++++. +|+++|+||||+|||+.+...+.+.|..+...|.+|++|||+
T Consensus 942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 45567889999999999999999985 799999999999999999999999999987779999999995
No 381
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.73 E-value=1e-17 Score=112.54 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
++++...++++..||||+.||++||.+|.++.++++||||++.||...+-.+...|+...++ ++|.+++.||
T Consensus 443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHD 515 (591)
T COG1245 443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD 515 (591)
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecc
Confidence 45678889999999999999999999999999999999999999999999999999998764 8999999997
No 382
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.6e-17 Score=103.04 Aligned_cols=71 Identities=27% Similarity=0.446 Sum_probs=63.6
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+++.+...+|||||||||.+||.|++ ++++++|||||+.||..-+...+.+.+++.++|..|+.|-||
T Consensus 124 d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD 200 (259)
T COG4559 124 DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200 (259)
T ss_pred ChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 44567777888999999999999999864 446889999999999999999999999999999999999997
No 383
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.73 E-value=2.5e-17 Score=118.79 Aligned_cols=66 Identities=27% Similarity=0.327 Sum_probs=62.0
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIG--------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~--------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++++.+|||||+++++++++|+. +|+++|+||||++||+.+.+.+++.|..+.+.|++|++|||.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~ 1016 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHV 1016 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecH
Confidence 457899999999999999999995 899999999999999999999999999998789999999994
No 384
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.72 E-value=4.1e-17 Score=96.71 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++|+||++++++++++.. +|+++++|||++|+|+..+..+.+.+.++..++.+++++||+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~ 140 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 599999999999999987 789999999999999999999999998876558899999996
No 385
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.5e-17 Score=104.58 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=55.3
Q ss_pred cCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...+||+||+||+++|++++. +|+++++|||+++||+..+..+.+.+.++.+ +.++|++||+
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~ 232 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHL 232 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEech
Confidence 344699999999999987654 9999999999999999999999999998754 7899999996
No 386
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=9.7e-18 Score=101.59 Aligned_cols=64 Identities=27% Similarity=0.508 Sum_probs=60.0
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|.++|||++||+.|||+++.+-++++|||||++||...++.+.++|.+.+..|.+++=+-||
T Consensus 148 LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 148 LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc
Confidence 3578999999999999999999999999999999999999999999999987789999988886
No 387
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.71 E-value=3.2e-17 Score=111.30 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=57.2
Q ss_pred cCcCCCCChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALI----------GDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~----------~~p~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..+.+|||||+||+++|++++ .+|+++|||||| ++||+..+..+.+.+..+ .|.+||++||+
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~ 536 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHK 536 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECc
Confidence 3467899999999999999887 589999999998 789999999999999987 58899999996
No 388
>KOG0927|consensus
Probab=99.70 E-value=4.4e-17 Score=110.77 Aligned_cols=67 Identities=30% Similarity=0.422 Sum_probs=59.7
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+..++.+.+||||++.|+++||+|..+|++++|||||++||..++..+-+.|.++.+ .++++++|+
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~ 278 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS 278 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc
Confidence 3567788999999999999999999999999999999999999999999998877532 289999985
No 389
>PRK03918 chromosome segregation protein; Provisional
Probab=99.69 E-value=9.5e-17 Score=113.40 Aligned_cols=66 Identities=29% Similarity=0.489 Sum_probs=58.0
Q ss_pred hcCcCCCCChHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRK------LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr------~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+.++..|||||+++ ++++++++.+|+++||||||++||+..+..+.+++..+...+.+||++||+
T Consensus 782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~ 853 (880)
T PRK03918 782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHD 853 (880)
T ss_pred CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 356788999999994 555667889999999999999999999999999999876667899999996
No 390
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.69 E-value=1.2e-16 Score=109.51 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIGD----PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~----p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+||||+||+++|++++.. |+++|||||++|+|+..+..+.+.+.++.+ +.+||++||+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~ 502 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHL 502 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEECh
Confidence 57899999999999999885 699999999999999999999999999864 8999999995
No 391
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.68 E-value=1.5e-16 Score=96.93 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=58.6
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~~g~til~~~h~ 72 (72)
++..+....++|+||+|+..+++++ .+|+++++|||++|+|+..+..+. .+++.+.+.|.+++++||+
T Consensus 82 ~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 82 EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 3455667789999999999999874 899999999999999999999986 4677776668999999995
No 392
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=3.2e-16 Score=114.89 Aligned_cols=63 Identities=29% Similarity=0.379 Sum_probs=57.3
Q ss_pred cCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCceEEEEecC
Q psy858 10 ESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-----TGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-----~g~til~~~h~ 72 (72)
....|||||+| |+++|++++.+|++++|||||+|||+.....+...+..+.. .|.+||++||+
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd 1269 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHD 1269 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecC
Confidence 45789999999 99999999999999999999999999999999998887632 37899999997
No 393
>KOG0927|consensus
Probab=99.66 E-value=1.3e-16 Score=108.53 Aligned_cols=69 Identities=29% Similarity=0.438 Sum_probs=61.5
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||++ .....++++||+|||+||.+|+.++..|.+++|||||+|||..+...+.+.|.+. ..+|+++|||
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHD 565 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHD 565 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeech
Confidence 4665 5667789999999999999999999999999999999999999999999998764 3489999997
No 394
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.65 E-value=4.1e-16 Score=111.40 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=59.2
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.++.+|||||+++++++++++ .+|+++|||||+++||+..+..+.+++..+.+ +.+|||+||+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~ 1151 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHN 1151 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcC
Confidence 356788999999999999999984 67799999999999999999999999998764 5789999996
No 395
>KOG0062|consensus
Probab=99.65 E-value=4e-16 Score=105.70 Aligned_cols=69 Identities=33% Similarity=0.471 Sum_probs=59.5
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||++ +.+...+.+||||||-||++|.+...+|-+++|||||+.||..+-..+...|+.. +..|++||||
T Consensus 469 ~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd 538 (582)
T KOG0062|consen 469 FGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD 538 (582)
T ss_pred cCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc
Confidence 4554 3455568899999999999999999999999999999999999999998887664 4589999997
No 396
>PRK10869 recombination and repair protein; Provisional
Probab=99.65 E-value=7.6e-16 Score=105.57 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+||||++|+++|++++. +|+++|||||++|+|......+.+.++++.+ +.+||++||+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~ 492 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHL 492 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 3689999999999999997 5899999999999999999999999999864 7899999995
No 397
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=7.8e-16 Score=96.49 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=67.5
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|.++.++|++++|.||+-|++++.+...+|+++|+||-.+.-|+..++...+.+.++.+++.|++++|||
T Consensus 136 ELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 136 ELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred HHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999997778999999997
No 398
>KOG0065|consensus
Probab=99.64 E-value=9.3e-17 Score=116.72 Aligned_cols=72 Identities=33% Similarity=0.606 Sum_probs=67.3
Q ss_pred CCCcchhcCcCCC----CChHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGR----YSGGNKRKLSTAMALIGDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~----lS~G~~qr~~ia~~l~~~p-~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++|+++++..++. ||..||||+.||--|+.+| .+++|||||+|||..+...++++++++++.|.||+.+-|.
T Consensus 913 leL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ 989 (1391)
T KOG0065|consen 913 LELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ 989 (1391)
T ss_pred hCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4677888888887 9999999999999999999 7899999999999999999999999999999999999984
No 399
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.9e-16 Score=104.00 Aligned_cols=61 Identities=30% Similarity=0.623 Sum_probs=56.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.-.||||||||++|||+++.+|++++|||.|+.||..+.+.+...+++.. .|+|.+++.|.
T Consensus 397 glklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahr 457 (497)
T COG5265 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHR 457 (497)
T ss_pred eeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeeh
Confidence 34589999999999999999999999999999999999999999998875 58999999884
No 400
>KOG0066|consensus
Probab=99.63 E-value=7e-16 Score=104.29 Aligned_cols=69 Identities=29% Similarity=0.496 Sum_probs=60.3
Q ss_pred CCCcchhcC-cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHR-ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~-~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+..++|. .+..|||||+.||++|-.-++.|+++||||||++||..+...+.+.|.++ ...|||+|||
T Consensus 691 fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHD 760 (807)
T KOG0066|consen 691 FGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHD 760 (807)
T ss_pred hhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecc
Confidence 455555554 57899999999999999999999999999999999999999999999875 3489999997
No 401
>PRK01156 chromosome segregation protein; Provisional
Probab=99.60 E-value=6e-15 Score=104.90 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=55.8
Q ss_pred cCcCCCCChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-ceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLST------AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KT-G-QSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~i------a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~-g-~til~~~h~ 72 (72)
...+..||||+++++++ |++++.+|++++|||||++||+..+..+.+++.... .. | .++|++||+
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~ 869 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHH 869 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECc
Confidence 34688999999999875 589999999999999999999999999999987643 33 3 489999996
No 402
>KOG0054|consensus
Probab=99.59 E-value=3.9e-15 Score=109.19 Aligned_cols=64 Identities=27% Similarity=0.440 Sum_probs=56.5
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+.-+||||||||+++|||+.++.++++||.|++++|....+++.+-.-.-.-+++|+|++||.
T Consensus 639 ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHq 702 (1381)
T KOG0054|consen 639 ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQ 702 (1381)
T ss_pred CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCc
Confidence 4567899999999999999999999999999999999999999877665433358999999994
No 403
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=102.56 Aligned_cols=60 Identities=33% Similarity=0.556 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..||+|||||+++||.++++|++++|||-|++||+.....+++.+++.. .+.|||.|+|.
T Consensus 514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr 573 (604)
T COG4178 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHR 573 (604)
T ss_pred hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccc
Confidence 4699999999999999999999999999999999999999999998743 48999999994
No 404
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.58 E-value=6.3e-15 Score=90.44 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=64.2
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.++++-++..||.||||||++|||++.+|+++|.||..++||...+-++.++..++.++ |.+.|+++.+
T Consensus 140 Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 140 PDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred ccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech
Confidence 46788899999999999999999999999999999999999999999999999999765 9999999863
No 405
>KOG0056|consensus
Probab=99.58 E-value=2.1e-15 Score=102.79 Aligned_cols=61 Identities=26% Similarity=0.538 Sum_probs=55.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.-.|||||||||+|||++...|.+++|||.|+.||....+.|...+.++++ ++|-|++.|.
T Consensus 672 GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHR 732 (790)
T KOG0056|consen 672 GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHR 732 (790)
T ss_pred ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeee
Confidence 346999999999999999999999999999999999999999999999876 6777788774
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.58 E-value=2.4e-15 Score=86.15 Aligned_cols=35 Identities=43% Similarity=0.747 Sum_probs=32.2
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS 42 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~ 42 (72)
++++.+||+|||||+++|++++.+|+++||||||+
T Consensus 103 ~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 103 GQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34449999999999999999999999999999996
No 407
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.58 E-value=5.5e-16 Score=94.45 Aligned_cols=72 Identities=29% Similarity=0.525 Sum_probs=64.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHh-----cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALI-----GDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~-----~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++++.++.+.+|||||.|||-+|.... .|| +++++|||.++||...+..+..++..++..|.+|||++||
T Consensus 113 L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HD 191 (248)
T COG4138 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191 (248)
T ss_pred hcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccc
Confidence 36778888999999999999999998553 344 5999999999999999999999999999999999999997
No 408
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=1.5e-15 Score=94.89 Aligned_cols=67 Identities=27% Similarity=0.501 Sum_probs=62.6
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
....|+.+|.-|+.|+|.||.|++..|+++|.||||+.+++.++.+++.++..+.++ |.||++++||
T Consensus 151 IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D 218 (330)
T COG4170 151 IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218 (330)
T ss_pred HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEccc
Confidence 455689999999999999999999999999999999999999999999999998764 8999999997
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.55 E-value=2.8e-14 Score=100.65 Aligned_cols=66 Identities=26% Similarity=0.441 Sum_probs=61.8
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.-++..+|||||.||+.+|.-|.... -++||||||+||=....+.+.+.|.++...|.|||++.|+
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN 884 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN 884 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 45678899999999999999998887 7999999999999999999999999999999999999996
No 410
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.55 E-value=1.4e-14 Score=103.92 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=57.9
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.+..|||||++++++|++++. +|++++||||+++||+..+..+.++|..+.. +..+|++||+
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~ 1136 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLR 1136 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECc
Confidence 345678999999999999999984 7899999999999999999999999988754 5789999995
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.53 E-value=4e-14 Score=85.46 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~-g~til~~~h~ 72 (72)
+.++..++...++|+|++|...+.. .+.+|+++|+|||++|+|+.....+ ..+++.+.+. +.+++++||+
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 3445566677888888887443333 3459999999999999999987776 5566666664 8899999995
No 412
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.53 E-value=2.2e-14 Score=96.71 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=61.8
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++||||++||+-+||-+.++|+++|+.+||.|||.-+.+.+.+.|.+.++.|.+|+++|.+
T Consensus 397 ~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d 462 (501)
T COG3845 397 PDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462 (501)
T ss_pred CCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh
Confidence 345688999999999999999999999999999999999999999999999999899999999864
No 413
>KOG0054|consensus
Probab=99.51 E-value=8.8e-14 Score=102.25 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=61.9
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||+........++|-||||.+++|||++++.++++|||.|+++|+.+-..|.+.|++-- .++||+.+.|+
T Consensus 1264 ~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1264 GLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHR 1333 (1381)
T ss_pred CCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence 34445555667899999999999999999999999999999999999999999998843 48999999995
No 414
>PRK02224 chromosome segregation protein; Provisional
Probab=99.48 E-value=1.3e-13 Score=97.89 Aligned_cols=63 Identities=30% Similarity=0.469 Sum_probs=54.6
Q ss_pred cCCCCChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEEecC
Q psy858 10 ESGRYSGGNKR------KLSTAMALIGD-----P-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~q------r~~ia~~l~~~-----p-~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~-til~~~h~ 72 (72)
.+..||||+++ |++++++++.+ | +++|+||||+++|+..+..+.++|..+...|. +||++||+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~ 853 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHD 853 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 46799999999 88888888863 2 67999999999999999999999998875564 79999996
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.48 E-value=2.1e-13 Score=83.15 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=51.4
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~~g~til~~~h~ 72 (72)
.......++.+++| +..+.+.+.+|+++|+|||++|+|+.....+. .+++.+.+.+.++|++||+
T Consensus 85 i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~ 150 (202)
T cd03243 85 ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF 150 (202)
T ss_pred ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence 34445667766665 66667888999999999999999999888775 4566666668999999996
No 416
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.9e-13 Score=86.61 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=48.4
Q ss_pred CCCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 11 SGRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
...+|+||+|+++++++++ .+|+++++||||++||+..++.+.+.+.++ +.+++.++|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~ii~~~~ 247 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQTFVTTTD 247 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCEEEEeCC
Confidence 4568999999999999985 799999999999999999999999998764 234444443
No 417
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.44 E-value=4.9e-13 Score=82.99 Aligned_cols=61 Identities=23% Similarity=0.151 Sum_probs=50.4
Q ss_pred cCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMAL--IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l--~~~p~~lllDEP---~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
....+|.|++++..+++++ +.+|+++|+||| |+++|+.+... .++..+.+ .|.+++++||+
T Consensus 86 ~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 86 QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech
Confidence 4678999999999999999 899999999999 88899888854 33444444 48899999994
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=5.7e-13 Score=81.89 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=53.7
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~g~til~~~h~ 72 (72)
+..++...++|.|++|. ..+..++.+|+++++|||++|+|+.....+ +.++..+.+.|.++|++||+
T Consensus 83 d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 83 DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 34556677899999975 555668899999999999999999776654 55677776679999999995
No 419
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=8.4e-13 Score=86.97 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=52.8
Q ss_pred CCCChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIG---------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~---------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+|.||+|++.+|..++. .|++++||||+++||+..++.+.+.+... |..+++++|+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~ 340 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAIS 340 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecC
Confidence 3689999999999999999 99999999999999999999999998653 6789999985
No 420
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.40 E-value=1e-12 Score=97.05 Aligned_cols=64 Identities=33% Similarity=0.434 Sum_probs=54.3
Q ss_pred hhcCcCCCCChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLS----TAMA--------LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~----ia~~--------l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++.+..|||||||++. +|++ +..+|++++|||||+|+|+.....+++++.++ |.++||+|+.
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 345567899999999996 4544 55799999999999999999999999999876 7889999874
No 421
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.7e-12 Score=92.95 Aligned_cols=64 Identities=33% Similarity=0.482 Sum_probs=56.2
Q ss_pred CcCCCCChHHHHHHHHHH------HHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAM------ALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~------~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++.+||||++-.+++|. .+..+ -+++++||||..||+...+.+.+++..+...+..|++|||+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~ 882 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV 882 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence 578899999998666555 44566 69999999999999999999999999998779999999996
No 422
>KOG0066|consensus
Probab=99.39 E-value=1.8e-13 Score=92.77 Aligned_cols=65 Identities=32% Similarity=0.486 Sum_probs=57.5
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..+++...+|||+|-|+++||||...|-+++|||||+.||..+.-.+-..+...+ .|.+++|||
T Consensus 404 EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHD 468 (807)
T KOG0066|consen 404 EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHD 468 (807)
T ss_pred hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecc
Confidence 46678888999999999999999999999999999999999998877777766543 599999997
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.37 E-value=1.9e-12 Score=85.14 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=51.9
Q ss_pred cCCCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+|.||+|++.+|+.++ .+|+++++|||+++||+..++.+.+.+.++ +..+++++|+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~ 338 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTD 338 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCC
Confidence 45679999999999999885 789999999999999999999999888653 4578888874
No 424
>KOG0060|consensus
Probab=99.37 E-value=1.9e-12 Score=89.05 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=53.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..||+||+||+++||.+.++|++.||||-|+++|......+...+++ .|.|+|-|+|.
T Consensus 569 dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHR 626 (659)
T KOG0060|consen 569 DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHR 626 (659)
T ss_pred hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccH
Confidence 46999999999999999999999999999999999999999988765 58999999994
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=4.7e-12 Score=89.69 Aligned_cols=66 Identities=26% Similarity=0.488 Sum_probs=61.5
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++...+|||||.||+.+|.-+-++= =+++||||+.||=+...+++.+.++.++..|-|+|+|.||
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD 542 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD 542 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 56778999999999999999998884 3899999999999999999999999999889999999997
No 426
>KOG2355|consensus
Probab=99.34 E-value=1.3e-12 Score=81.42 Aligned_cols=63 Identities=27% Similarity=0.441 Sum_probs=58.7
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.+....|-|||+|+.|++.|+..-++++|||-|..||..++..+.+++++-.++ |.||++.||
T Consensus 143 WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 143 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 345678999999999999999999999999999999999999999999998764 999999999
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.34 E-value=3.7e-12 Score=90.38 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=56.7
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~ 72 (72)
...+...++|+||++++.+++++ .+|.++|+|||++|+|+.....+.. ++..+.+.|.++|++||+
T Consensus 383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~ 449 (782)
T PRK00409 383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHY 449 (782)
T ss_pred chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCh
Confidence 34456778999999999999988 8899999999999999999998864 566666678999999995
No 428
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.31 E-value=2.2e-11 Score=73.20 Aligned_cols=64 Identities=25% Similarity=0.453 Sum_probs=53.2
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-+...+|.|+++.+.++..+...+ .++++|||-++|.|..++.+.+++.+..+.+.-+|++||+
T Consensus 232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHS 298 (303)
T PF13304_consen 232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHS 298 (303)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-
T ss_pred EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCcc
Confidence 356678999999999888887777 8999999999999999999999998776557899999995
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.28 E-value=1.4e-11 Score=87.36 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=55.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~g~til~~~h~ 72 (72)
.....++|+|++++..+++.+ .+|.++|+|||++|+|+.....+ ..++..+.+.|.++|++||+
T Consensus 380 ~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~ 444 (771)
T TIGR01069 380 EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHY 444 (771)
T ss_pred hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 345678999999999988876 78999999999999999999998 46777777679999999995
No 430
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.28 E-value=3.8e-11 Score=73.48 Aligned_cols=56 Identities=23% Similarity=0.351 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecC
Q psy858 17 GNKRKLSTAMALIG--DPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 17 G~~qr~~ia~~l~~--~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~~g~til~~~h~ 72 (72)
.+.+++.-+...+. +|+++|+|||++|+|+..+..+. .++..+.+.|.++|++||+
T Consensus 89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~ 147 (199)
T cd03283 89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHD 147 (199)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 34466666666666 99999999999999999998764 5777777678999999996
No 431
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.26 E-value=2.3e-11 Score=81.47 Aligned_cols=62 Identities=29% Similarity=0.490 Sum_probs=56.7
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
+-.||.|||||+++..|+.-+.+++++||=.+..||..++.+...+.-.. +.|+||+.+|||
T Consensus 446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD 508 (546)
T COG4615 446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508 (546)
T ss_pred ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC
Confidence 34689999999999999999999999999999999999999998887654 569999999997
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.23 E-value=7.7e-11 Score=72.25 Aligned_cols=60 Identities=30% Similarity=0.505 Sum_probs=47.0
Q ss_pred CCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+|||||..+++|.-+ ..+.++++||||.++||...+..+.++|.++.+ +.-+|++||+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~ 198 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHN 198 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 37999999999998754 356689999999999999999999999998754 5779999995
No 433
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=8e-11 Score=72.68 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhC---CceEEEEecC
Q psy858 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKT---GQSIVLTSHR 72 (72)
Q Consensus 17 G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~-i~~~l~~~~~~---g~til~~~h~ 72 (72)
.+.|+++++++++.+|+++|+|||++|+|+..... +..+++.+.+. +.++|++||+
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~ 153 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHF 153 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCh
Confidence 45699999999999999999999999999976554 46688887654 3589999996
No 434
>KOG0063|consensus
Probab=99.20 E-value=2e-11 Score=82.34 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=64.9
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+...++.+.+||||+-||.++|.+-++..+++++|||.+.||...+..-...|+.+.....=|+++.||
T Consensus 203 L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 203 LNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred HhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 4566778899999999999999999999999999999999999999999999999988778889999997
No 435
>KOG0063|consensus
Probab=99.20 E-value=9.8e-12 Score=83.80 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=62.2
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
+++..++.+.+||||+.||++++.++-...++++.|||.+.||...+......+++.. ....|-+++.||
T Consensus 446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhd 516 (592)
T KOG0063|consen 446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD 516 (592)
T ss_pred HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhH
Confidence 4567788999999999999999999999999999999999999999998888887753 457888888886
No 436
>KOG0065|consensus
Probab=99.20 E-value=9.6e-12 Score=91.22 Aligned_cols=71 Identities=24% Similarity=0.454 Sum_probs=61.7
Q ss_pred CCCcchhcCcC-----CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 1 MGLTEYRHRES-----GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 1 ~~l~~~~~~~~-----~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+|+++++|..+ +-.|||||||++++-+++.+++++++||+|.|||..+.-++.+.++++... +.|++++-+
T Consensus 243 lGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~ 319 (1391)
T KOG0065|consen 243 LGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSIL 319 (1391)
T ss_pred hCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEec
Confidence 46776666655 458999999999999999999999999999999999999999999998764 778777654
No 437
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=99.13 E-value=2.2e-10 Score=62.48 Aligned_cols=51 Identities=39% Similarity=0.513 Sum_probs=38.7
Q ss_pred cCcCCCCChHHH-HHHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 8 HRESGRYSGGNK-RKLSTAMA------LIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 8 ~~~~~~lS~G~~-qr~~ia~~------l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
.+....+||||+ ..++++.+ +.. .|++++|||||+++|+...+.+.+++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456789999999 44444442 223 3689999999999999999999998864
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.11 E-value=3.8e-10 Score=67.22 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=54.8
Q ss_pred hhcCcCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVD---PISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld---~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+..+..+|+|+++ ..........+|+++++|||++.+| ...+..+.+++..+++.|.|+++++|+
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 445667788999987 4444445667899999999999999 888888888988888789999999984
No 439
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.03 E-value=6.5e-10 Score=75.06 Aligned_cols=65 Identities=23% Similarity=0.436 Sum_probs=60.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.+...+||.||+.|..+|.++...|.+++.||-.+.||+.+...+..-+.+++++ |.|.+++||+
T Consensus 502 Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr 567 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567 (593)
T ss_pred hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 3467889999999999999999999999999999999999999999999999765 9999999995
No 440
>KOG0064|consensus
Probab=99.02 E-value=3.4e-10 Score=77.99 Aligned_cols=58 Identities=28% Similarity=0.423 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.-||||+|||+++||.+.+.|+..+|||-|++..+.....+++..+. .|.+.+-+||.
T Consensus 611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithr 668 (728)
T KOG0064|consen 611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHR 668 (728)
T ss_pred hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecC
Confidence 36999999999999999999999999999999999999988877654 49999999994
No 441
>PRK14079 recF recombination protein F; Provisional
Probab=99.01 E-value=1.1e-09 Score=71.80 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=43.4
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 12 GRYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
..+|+||++++.++..++ .+|+++++|||+++||+..+..+.+.+..
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 357999999999999998 89999999999999999999999988854
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.01 E-value=8e-10 Score=68.37 Aligned_cols=59 Identities=31% Similarity=0.490 Sum_probs=40.0
Q ss_pred CCCChHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 12 GRYSGGNKRK----LSTAMAL--IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr----~~ia~~l--~~~p~~lllDEP---~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.++|.|+.+. ..++.++ +.+|+++++||| |+++|.... ...++..+.+. +.+++++||+
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCc
Confidence 4566666543 3355444 579999999999 777776542 34455555555 8899999996
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.00 E-value=8.6e-10 Score=67.39 Aligned_cols=44 Identities=30% Similarity=0.317 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy858 18 NKRKLSTAMALIGDPPLVFLDEPT-----SGVDPISRHRLWAVLSQIQK 61 (72)
Q Consensus 18 ~~qr~~ia~~l~~~p~~lllDEP~-----~gld~~~~~~i~~~l~~~~~ 61 (72)
++++..+|++++.+|+++++|||| ++||+..++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 788899999999999999999999 99999999999999998753
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.87 E-value=1.6e-08 Score=62.85 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CceEEEEecC
Q psy858 18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 18 ~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~~-g~til~~~h~ 72 (72)
+-++++-....+.+|+++++|||++|+++.....+... ++.+.+. +.+++++||+
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~ 152 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHY 152 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34566666666789999999999999999999988877 6666655 8999999996
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.77 E-value=6e-08 Score=60.46 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CceEEEEecC
Q psy858 18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 18 ~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~~-g~til~~~h~ 72 (72)
+-++++-+..-+.++.++|+|||++|.|+.....+ +.++..+.+. +.++|++||+
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~ 153 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHY 153 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEccc
Confidence 44566655566788999999999999998777774 5677777765 8899999996
No 446
>PRK13695 putative NTPase; Provisional
Probab=98.66 E-value=1.3e-07 Score=56.34 Aligned_cols=60 Identities=10% Similarity=0.167 Sum_probs=46.0
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDE--P~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...+|++++-...+++....+|+++++|| |+.++++.. .+.+.+..+.|.++++++|+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECc
Confidence 3456789999999999999899999999999 444555444 44444444568999999995
No 447
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.60 E-value=1.6e-07 Score=69.35 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=54.9
Q ss_pred CcCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+....||||+|-..++|.-| +.+.++++|||--++||......+..+|+++. .+.=+|+|||.
T Consensus 1062 ~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr 1128 (1163)
T COG1196 1062 QSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHR 1128 (1163)
T ss_pred cchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcC
Confidence 35667999999999988855 56678999999999999999999999999976 57789999995
No 448
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.57 E-value=2.4e-07 Score=66.76 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=45.0
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 24 TAMALIGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 24 ia~~l~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+++..+|+++++|||+.+| |+..++.+.+.++.+++.|.+++++||+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs 729 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQS 729 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567788999999999999999 7999999999999998889999999996
No 449
>PF13175 AAA_15: AAA ATPase domain
Probab=98.57 E-value=4.4e-07 Score=59.44 Aligned_cols=64 Identities=16% Similarity=0.367 Sum_probs=52.9
Q ss_pred CcCCCCChHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALI------GD-PP---LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~------~~-p~---~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
-+..++|.|.++.+.++..+. .. +. ++++|||-+.|-|..++.+.+.|.++.. .+.-||++||+
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHS 411 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHS 411 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 356788999998877776542 11 22 9999999999999999999999999876 48899999995
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.51 E-value=3.8e-07 Score=65.48 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=42.0
Q ss_pred HHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 27 ALIGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+..+|+++++|||+.+| |+...+.+.+.++..++.|.+++++||+
T Consensus 648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~ 694 (818)
T PRK13830 648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQS 694 (818)
T ss_pred hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 346899999999999999 7999999999999998889999999996
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.49 E-value=5.9e-07 Score=63.02 Aligned_cols=59 Identities=24% Similarity=0.437 Sum_probs=42.2
Q ss_pred cCCCCChHHHHHHHHHH--HHh----cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAM--ALI----GDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~--~l~----~~p~~lllDEP~~gld~~~~~~i~~-~l~~~~~~g~til~~~h~ 72 (72)
.+..||||++|-+++|. |++ ...++ ++|||++.||+..+..+.+ ++... ..-||+.|||
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d 613 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTD 613 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEech
Confidence 56789999999876655 443 22344 6799999999999999875 55432 4566776665
No 452
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=1.4e-06 Score=53.84 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..|.|+-=.--+ .--.++.-++|||||-++|.|.-+-.+..++.++.++|.-+||+||.
T Consensus 129 ~~SHGEsf~~i~-~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHS 187 (233)
T COG3910 129 HMSHGESFLAIF-HNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS 187 (233)
T ss_pred hhccchHHHHHH-HHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 458887543333 33356677999999999999999999999999999999999999995
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.41 E-value=1.6e-06 Score=54.08 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=35.0
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 30 GDPPLVFLDEPTSGV----DPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gl----d~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+|+++++|||++++ |+...+.+.+.++.+++.|.|++++++
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~ 161 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN 161 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 469999999999998 888888899999888777887776654
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.38 E-value=3.4e-06 Score=52.30 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIG--DPPLVFLDEPTSG---VDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~--~p~~lllDEP~~g---ld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.++.+.+..+...+. +|+++++|||++. .|......+...++.+++.|.|+++++|.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 346778889998888887 8999999999964 45555555555566666678999999884
No 455
>PF13166 AAA_13: AAA domain
Probab=98.34 E-value=4.7e-06 Score=58.60 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=54.7
Q ss_pred CcCCCCChHHHHHHHHHHHH--hc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMAL--IG-------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ--KTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l--~~-------~p~~lllDEP~~gld~~~~~~i~~~l~~~~--~~g~til~~~h~ 72 (72)
.....||-|+|.-++++-.| +. ...++++|-|.++||...+..+...|.++. ....=||+.|||
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn 570 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHN 570 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCc
Confidence 34678999999999999854 23 567999999999999999999999999985 446779999996
No 456
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=4.4e-06 Score=54.97 Aligned_cols=60 Identities=28% Similarity=0.490 Sum_probs=53.9
Q ss_pred CCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 12 GRYSGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..||-|.-+-++++-+|.+. |.++++|||-.+|=|..-..+..++...++.+ -|+++||.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS 330 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHS 330 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCC
Confidence 48999999999999999875 67999999999999999999999999876655 89999994
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.29 E-value=7.1e-07 Score=55.61 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=37.1
Q ss_pred HhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 28 LIGDPPLVFLDEPTS------GVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 28 l~~~p~~lllDEP~~------gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
...+|+++++| |++ ..|+.....+.+.+.+++++ |.+|++++|.
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 35799999999 765 47999999999999888764 9999999994
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.24 E-value=1e-05 Score=46.36 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTS----------GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~----------gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.+..++...+.+...+|+++++||++. +.+....+.+.++.....+.+.++++++|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 334555667778888899999999999995 445555677777766655569999999984
No 459
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.18 E-value=5.7e-06 Score=59.43 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=41.5
Q ss_pred HHHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 26 MALIGDPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 26 ~~l~~~p~~lllDEP~~gld-~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+-.+|+++++|||+.+|| +..++.+.+.++..++.|.+++++||+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~ 677 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQS 677 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34456899999999999999 788999999999988889999999995
No 460
>KOG0964|consensus
Probab=98.13 E-value=1.6e-06 Score=63.03 Aligned_cols=53 Identities=21% Similarity=0.398 Sum_probs=46.0
Q ss_pred cCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy858 10 ESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~ 62 (72)
.+.+|||||+.-+|+|.-|+ -+.++++|||.-++||+.++..+.++|+++...
T Consensus 1094 ~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~ 1150 (1200)
T KOG0964|consen 1094 EMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS 1150 (1200)
T ss_pred HHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc
Confidence 45689999999999988663 344799999999999999999999999999764
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.07 E-value=2.3e-05 Score=50.22 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=29.9
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 24 TAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 24 ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.....+.+|+++++|||++ .+.+..++..+ +.|.++++++|+
T Consensus 187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~ 228 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHG 228 (270)
T ss_pred HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEech
Confidence 3344447999999999974 33455555554 469999999995
No 462
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.03 E-value=2.1e-05 Score=56.48 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=41.7
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 27 ALIGDPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gld-~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+...|.++++|||...|| +...+.+.++++..++.|..++++||+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~ 684 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQS 684 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4567899999999999999 888999999999998888999999995
No 463
>KOG0962|consensus
Probab=98.03 E-value=1.5e-05 Score=59.49 Aligned_cols=60 Identities=28% Similarity=0.391 Sum_probs=50.0
Q ss_pred CCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---h--CCceEEEEecC
Q psy858 13 RYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ---K--TGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~---~--~g~til~~~h~ 72 (72)
.-|.||+= |+++|=.|++++.++-|||||++||.....-++..+..+. + .+--.|++|||
T Consensus 1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence 45888874 8899999999999999999999999999988887776653 2 25668899996
No 464
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.94 E-value=6.4e-05 Score=54.59 Aligned_cols=63 Identities=27% Similarity=0.267 Sum_probs=44.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIG--DPPLVFLDEP---TSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~--~p~~lllDEP---~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+......|.-+.....++..+-. ++.++|+||| |+.+| .....+.++..+.+. |.+++++||+
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d--g~aia~aile~l~~~~~~~~l~aTH~ 729 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD--GLSIAWAVAEYLHDKIGAKTLFATHY 729 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch--hHHHHHHHHHHHHhcCCceEEEEech
Confidence 33445677777777777776654 8899999999 66666 333455666666665 6899999995
No 465
>KOG0996|consensus
Probab=97.88 E-value=1.4e-05 Score=59.06 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=50.2
Q ss_pred CcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 9 RESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+++.+||||++..-++|..|+ .+.++++|||.-++||....-.+...|++-. .+.-+|+||
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT-kNAQFIIIS 1255 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT-KNAQFIIIS 1255 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc-cCCeEEEEE
Confidence 468999999999888887553 4468999999999999999999999998743 456677766
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.87 E-value=6.9e-06 Score=52.08 Aligned_cols=58 Identities=26% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCCCChHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGN--------KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~--------~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~-i~~~l~~~~~~g~til~~~h~ 72 (72)
...+|||+ +|++++|+++..++++.++ ||+.+|..+... +. +..++..+.|.|+.+|+
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~ 193 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRR 193 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchH
Confidence 45679999 9999999999899999999 999999533332 33 44444356788998884
No 467
>KOG0933|consensus
Probab=97.87 E-value=1.7e-05 Score=58.00 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=48.1
Q ss_pred cCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 10 ESGRYSGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l----~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..+||||||..||++.-| ..+.+++||||--++||....+.|-.+|+..- .+.-+|+||
T Consensus 1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVS 1142 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVS 1142 (1174)
T ss_pred HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEE
Confidence 3468999999999876633 45678999999999999999999999998743 355566665
No 468
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00022 Score=49.81 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=50.3
Q ss_pred CCCChHHHHHHHHHH--HHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 12 GRYSGGNKRKLSTAM--ALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~--~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.-|||+--|+.+|. +++.. .+.+||||--+|+.=.....+.+.|+++.+ ..-|+.|||
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTH 492 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTH 492 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEec
Confidence 446999999999887 34443 458999999999999999999999999864 678999999
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.76 E-value=2e-06 Score=58.69 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=38.1
Q ss_pred hhcCcCCCCChHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTA--MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia--~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++....+|+|++||+.|+ .++...|+.. ...++.+.++++.+++.|.|+++++|+
T Consensus 108 ~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~ 166 (484)
T TIGR02655 108 LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTER 166 (484)
T ss_pred HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 33444455666666666666 3443433322 467788999998888789999999995
No 470
>KOG0018|consensus
Probab=97.67 E-value=5.4e-05 Score=55.71 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=49.4
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~----~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+-++..+||||++.-.++|..++- +.++++|||.-++||......+...|+ .++--+|+||
T Consensus 1045 RFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvIS 1109 (1141)
T KOG0018|consen 1045 RFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVIS 1109 (1141)
T ss_pred ccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEe
Confidence 345678999999999999887753 357999999999999999999999998 3455555554
No 471
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.62 E-value=0.00087 Score=42.13 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCCCChHHH--HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHh-CCceEEEEecC
Q psy858 11 SGRYSGGNK--RKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS-QIQK-TGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~--qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~-~~~~-~g~til~~~h~ 72 (72)
...+|.=+. ++++-+.--+.+..++|+||+..|-++.....+...+. .+.+ .+..++++||+
T Consensus 100 ~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~ 165 (235)
T PF00488_consen 100 ESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHF 165 (235)
T ss_dssp TTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-
T ss_pred ccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEecc
Confidence 344555444 44443333356677999999999999999988655444 4555 48889999995
No 472
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.00024 Score=46.61 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=32.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 35 VFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 35 lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++|||+.+||+.++..+.+.+.+.. .+.++|++||+
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~ 152 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHA 152 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCC
Confidence 55689999999999999999998864 47889999996
No 473
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.00099 Score=46.92 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=54.2
Q ss_pred CcCCC-CChHHHHHHHHHHHHh--------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGR-YSGGNKRKLSTAMALI--------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~-lS~G~~qr~~ia~~l~--------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+ ||-|++.-++++-.|+ ..-+++++|.|.+++|..-..+....++....+++-|++-||+
T Consensus 524 ~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn 596 (758)
T COG4694 524 QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN 596 (758)
T ss_pred ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc
Confidence 34455 9999999888876553 2346899999999999999999999999988889999999996
No 474
>PF13514 AAA_27: AAA domain
Probab=97.30 E-value=0.001 Score=49.53 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=47.6
Q ss_pred CcCCCCChHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 9 RESGRYSGGNKR------KLSTAMAL-IGDPPL-VFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 9 ~~~~~lS~G~~q------r~~ia~~l-~~~p~~-lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+..||.|-+= |++++..+ -.+.++ +|+|++|.+.|..-....+++|.++.+.+ =||+-||
T Consensus 1021 ~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~-QVI~FTc 1090 (1111)
T PF13514_consen 1021 VPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRR-QVIYFTC 1090 (1111)
T ss_pred eeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCC-eEEEEec
Confidence 356679999984 66666666 344454 99999999999999999999999987654 4555554
No 475
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.16 E-value=0.0029 Score=46.20 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHHH--HhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMA--LIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~--l~~~p~~lllDEP~~gld~~~~~~i~~~-l~~~~~-~g~til~~~h~ 72 (72)
...+|.=+.-...++.. -+.++.++|+||+..|.++.....+... +..+.+ .+..++++||.
T Consensus 649 ~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~ 714 (840)
T TIGR01070 649 ASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHY 714 (840)
T ss_pred hcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 34455555444444444 4577899999999999988888875554 444455 58889999995
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.10 E-value=0.00081 Score=45.82 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCCCChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 11 SGRYSGGNKRKLSTAMALI-------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~-------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+.|.|+|+|.+.+.+.+ .++-++++|+||++.|+. +++...+.+.-..|.+..+.+|
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~ 284 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESY 284 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeecc
Confidence 4678999999999999877 788899999999999996 5566555554434666665544
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.07 E-value=0.0026 Score=38.77 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 23 STAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 23 ~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.+++..+|+++++|||. |+... ...+ +....|+.++.++|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~---~~~l-~~a~~G~~v~~t~Ha 108 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETI---RLAL-TAAETGHLVMSTLHT 108 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHH---HHHH-HHHHcCCEEEEEecC
Confidence 5778899999999999996 44432 2223 344569999999994
No 478
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.67 E-value=0.037 Score=30.10 Aligned_cols=61 Identities=26% Similarity=0.276 Sum_probs=44.7
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCceEEEEec
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA------VLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~------~l~~~~~~g~til~~~h 71 (72)
.....+++..+..+.++-..+|.++++||+..-.+......... ........+..++.++|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 34567777788888888888889999999999999888876654 12222334677877776
No 479
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.52 E-value=0.00097 Score=40.12 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 16 GGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 16 ~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.|+..|..++..+..+|+.+..+| +.++|...+.+.+.+.+..+.|.+|++.+|
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~p 113 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVP 113 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEch
Confidence 478899999999999999887776 789999999999999887555678888766
No 480
>PRK06893 DNA replication initiation factor; Validated
Probab=96.46 E-value=0.01 Score=36.92 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=32.0
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++++++||..... +....+.+.+++....+.|.+++++|+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits 132 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISA 132 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4578999999998754 555566788888887666777766654
No 481
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.46 E-value=0.011 Score=36.29 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=33.1
Q ss_pred cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 30 GDPPLVFLDE-----PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDE-----P~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+++.+++|- |+.+.+...++.+.++++.+++.|.|+++++|
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~ 152 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSE 152 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 3678999994 33455666777888899888878999999998
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.43 E-value=0.015 Score=38.33 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.-++.+++-.+|+++++||+. |+.+.....+ ....|++++.+.|.
T Consensus 185 ~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHT 229 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcC
Confidence 344677889999999999996 7776654332 34569999999883
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.41 E-value=0.015 Score=37.73 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-eEEEEecC
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHR 72 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~-til~~~h~ 72 (72)
.-.+..++-.+|+++++|||.. .+.+++++.+. .|+ +++.+.|.
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha 252 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHA 252 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeC
Confidence 3456678899999999999996 34566666654 455 56888884
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.34 E-value=0.01 Score=40.40 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=33.0
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPI-SRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~-~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+++++++|||...++.. .++.++.++..+.+.|+.+|+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits 234 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS 234 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 369999999999888765 45678888888777777888876
No 485
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.019 Score=38.56 Aligned_cols=44 Identities=30% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCCChHHHHHHHHHHHH---------hcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy858 12 GRYSGGNKRKLSTAMAL---------IGDPPLVFLDEPTSGVDPISRHRLWAV 55 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l---------~~~p~~lllDEP~~gld~~~~~~i~~~ 55 (72)
...|.||++-+.++.-| ....++++||+-++-||..-+..+++.
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~ 326 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT 326 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh
Confidence 45799999988877644 567899999999999999999999987
No 486
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.015 Score=38.37 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=41.6
Q ss_pred HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 23 STAMALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 23 ~ia~~l~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+++ ++.+|+ ++|..+|-+.|-|..+-.+.+++.++++.|.-+++.||.
T Consensus 252 ~L~l-li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHS 301 (374)
T COG4938 252 GLML-LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHS 301 (374)
T ss_pred HHHe-eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEech
Confidence 3444 455554 889999999999999999999999998889999999994
No 487
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.09 E-value=0.0083 Score=46.27 Aligned_cols=57 Identities=25% Similarity=0.459 Sum_probs=41.8
Q ss_pred cCCCCChHHHHHHHHHHHHh--------cC--------C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 10 ESGRYSGGNKRKLSTAMALI--------GD--------P-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~--------~~--------p-~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..+.+|||++..+.+...++ .. | ++++|||. +++|..+...++++++.+ |.=+||+|
T Consensus 1362 ~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~---~~q~i~~t 1435 (1486)
T PRK04863 1362 ESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---DMQLLIAA 1435 (1486)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc---CCcEEEec
Confidence 46789999998776666443 21 2 44599999 999999999999998743 44555554
No 488
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=96.04 E-value=0.024 Score=39.00 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH-----HHH----------HHHHHHHHHh-CCceEEEEe
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS-----RHR----------LWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~-----~~~----------i~~~l~~~~~-~g~til~~~ 70 (72)
.+=||-.-|-..|.-|+-.+.+++|+||-|+.-+.-. +.. +.+.++.+.+ .|.+.|++.
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~ 395 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVV 395 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEe
Confidence 3458999999999999999999999999998765444 322 3455666644 488877764
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.64 E-value=0.062 Score=29.55 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCceEEEEec
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-----TGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-----~g~til~~~h 71 (72)
..........++.++++||.-.. ++.....+...+..... .+..++++++
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~ 128 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATN 128 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecC
Confidence 34445566778999999997765 56666777777777642 4678888876
No 490
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=95.42 E-value=0.064 Score=38.51 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=37.3
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 29 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 29 ~~~p~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-..|.++++||.-.-+ ++...+.+.++++..++.|..++++||+
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~ 671 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQS 671 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4567899999987777 5778888999999988889999999985
No 491
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.15 E-value=0.17 Score=34.72 Aligned_cols=47 Identities=6% Similarity=0.193 Sum_probs=37.2
Q ss_pred HHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 25 AMALIGDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 25 a~~l~~~p~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+.-+.+++++++||.- -..+....+.+..++..+...|+.+|++++
T Consensus 200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 34446789999999984 455678889999999888777888888865
No 492
>PRK08181 transposase; Validated
Probab=94.95 E-value=0.095 Score=33.75 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=32.6
Q ss_pred hcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP-~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++++++||. ....+......+++++..- .++.++|++|+
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R-~~~~s~IiTSN 207 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISAR-YERRSILITAN 207 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHH-HhCCCEEEEcC
Confidence 568999999998 4567888888999999754 33467887765
No 493
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.81 E-value=0.068 Score=33.62 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=32.5
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHHHh-CCceEEEEec
Q psy858 20 RKLSTAMALI--GDPPLVFLDEPTSGVDP-------I-SRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~--~~p~~lllDEP~~gld~-------~-~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
..+..++.++ .+|+++++|..+.-.+. . ....+...|+.+++ .++++++++|
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq 189 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSH 189 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3444444443 47999999986553322 1 23345556666655 4999999998
No 494
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.75 E-value=0.2 Score=33.90 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----CCceEEEEecC
Q psy858 23 STAMALIGDPPLVFLDE----------PTSGVDPISRHRLWAVLSQIQK----TGQSIVLTSHR 72 (72)
Q Consensus 23 ~ia~~l~~~p~~lllDE----------P~~gld~~~~~~i~~~l~~~~~----~g~til~~~h~ 72 (72)
.+..|....|.++++|| +.++.|....+.+.+++..+.. .+..+|++||+
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~ 293 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 293 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 34455667899999999 4456777777778887776531 25678888873
No 495
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.72 E-value=0.11 Score=35.64 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHH-----HHHh-cCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CC
Q psy858 12 GRYSGGNKRKLSTA-----MALI-GDPP-LVFLD-----------------EP--TSGVDPISRHRLWAVLSQIQK--TG 63 (72)
Q Consensus 12 ~~lS~G~~qr~~ia-----~~l~-~~p~-~lllD-----------------EP--~~gld~~~~~~i~~~l~~~~~--~g 63 (72)
.+-|.++|-+...+ --+. .+-+ ++++| || +.|+|+.....+.+++.++.. .|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 44567777654432 2332 3344 57778 65 679999999999999998863 47
Q ss_pred c-----eEEEEecC
Q psy858 64 Q-----SIVLTSHR 72 (72)
Q Consensus 64 ~-----til~~~h~ 72 (72)
. ||++.+||
T Consensus 302 sIT~~~TVlv~~hd 315 (438)
T PRK07721 302 SITAFYTVLVDGDD 315 (438)
T ss_pred CeeeEEEEEEECCC
Confidence 5 99999996
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.48 E-value=0.07 Score=36.81 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=34.4
Q ss_pred cCCCEEEEeC---CCCCCCHHH--HHHHHHHHHHHHhCCceEEEEecC
Q psy858 30 GDPPLVFLDE---PTSGVDPIS--RHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDE---P~~gld~~~--~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+|+.+++|- |+.++|... ++.+..++..+++.|.|+++++|.
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~ 176 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGER 176 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4789999995 556777665 677888888777779999999984
No 497
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=0.19 Score=37.04 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=36.5
Q ss_pred CCCChHHHHHHHHHH---HH----h----cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy858 12 GRYSGGNKRKLSTAM---AL----I----GDP--PLVFLDEPTSGVDPISRHRLWAVLSQI 59 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~---~l----~----~~p--~~lllDEP~~gld~~~~~~i~~~l~~~ 59 (72)
..+||||+++++.-. +| + ..| ..+|+||.|+--|+.....++..++++
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f 1049 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF 1049 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc
Confidence 458999999886433 32 1 223 369999999999999999998887664
No 498
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.31 E-value=0.12 Score=30.89 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 21 KLSTAMALI--GDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 21 r~~ia~~l~--~~p~~lllDEP~~--gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-...++..+ .+.++++|||-.. .++....+.+.+++.+ +.++..+|++.++
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~ 137 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCC
Confidence 344444444 4579999999765 4566677788888865 4457889988764
No 499
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=94.29 E-value=0.099 Score=30.94 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=35.7
Q ss_pred cCCCCChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy858 10 ESGRYSGGNKRKLS--TAMALIG-DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62 (72)
Q Consensus 10 ~~~~lS~G~~qr~~--ia~~l~~-~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~ 62 (72)
++..+++|+++++. +...+-. +++++ |++++|....+.+.+.+.++.++
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 45567899988766 4455443 23333 99999999999999999887654
No 500
>PRK06526 transposase; Provisional
Probab=94.17 E-value=0.21 Score=31.87 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=31.3
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++++|+||.- ...+......+.+++..-.+ ..++|++|+
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~~s~IitSn 199 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-RASLIVTSN 199 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-cCCEEEEcC
Confidence 4678999999984 45788888889988876333 356777765
Done!