Query psy858
Match_columns 72
No_of_seqs 125 out of 1777
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 22:26:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 100.0 3E-29 1E-33 154.1 9.7 72 1-72 128-199 (224)
2 1g6h_A High-affinity branched- 100.0 4E-29 1.4E-33 156.0 10.0 72 1-72 141-212 (257)
3 3gfo_A Cobalt import ATP-bindi 100.0 3.5E-29 1.2E-33 158.0 9.6 72 1-72 131-203 (275)
4 2olj_A Amino acid ABC transpor 100.0 6.8E-29 2.3E-33 155.8 10.0 72 1-72 147-218 (263)
5 1b0u_A Histidine permease; ABC 100.0 5.1E-29 1.7E-33 156.1 9.4 72 1-72 140-212 (262)
6 3tif_A Uncharacterized ABC tra 100.0 5.8E-29 2E-33 153.8 9.5 72 1-72 132-205 (235)
7 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-28 4.8E-33 153.9 9.5 72 1-72 134-205 (256)
8 3tui_C Methionine import ATP-b 100.0 1E-28 3.6E-33 160.9 9.2 72 1-72 151-223 (366)
9 2onk_A Molybdate/tungstate ABC 100.0 7.8E-29 2.7E-33 153.8 8.2 72 1-72 114-186 (240)
10 2nq2_C Hypothetical ABC transp 100.0 2E-28 6.7E-33 152.9 9.9 72 1-72 116-188 (253)
11 2yz2_A Putative ABC transporte 100.0 2.4E-28 8.2E-33 153.2 9.7 72 1-72 124-197 (266)
12 1ji0_A ABC transporter; ATP bi 100.0 1.8E-28 6E-33 151.9 9.0 70 3-72 129-198 (240)
13 2ihy_A ABC transporter, ATP-bi 100.0 3.2E-28 1.1E-32 153.7 8.6 72 1-72 149-222 (279)
14 4g1u_C Hemin import ATP-bindin 100.0 3.8E-28 1.3E-32 152.5 8.4 72 1-72 129-207 (266)
15 2d2e_A SUFC protein; ABC-ATPas 100.0 2.5E-28 8.5E-33 151.9 7.4 71 2-72 130-202 (250)
16 1z47_A CYSA, putative ABC-tran 100.0 5.9E-28 2E-32 156.9 9.4 72 1-72 133-205 (355)
17 3fvq_A Fe(3+) IONS import ATP- 99.9 4.7E-28 1.6E-32 157.5 8.7 72 1-72 126-198 (359)
18 3rlf_A Maltose/maltodextrin im 99.9 6E-28 2E-32 158.0 9.1 72 1-72 121-193 (381)
19 3d31_A Sulfate/molybdate ABC t 99.9 6.9E-28 2.4E-32 156.2 9.2 72 1-72 115-187 (348)
20 2yyz_A Sugar ABC transporter, 99.9 9E-28 3.1E-32 156.2 9.6 72 1-72 121-193 (359)
21 2qi9_C Vitamin B12 import ATP- 99.9 7.9E-28 2.7E-32 150.0 8.9 72 1-72 114-192 (249)
22 1sgw_A Putative ABC transporte 99.9 3.7E-28 1.3E-32 148.8 6.9 71 1-72 122-192 (214)
23 1oxx_K GLCV, glucose, ABC tran 99.9 6.8E-28 2.3E-32 156.4 8.3 72 1-72 128-200 (353)
24 2zu0_C Probable ATP-dependent 99.9 1.3E-27 4.3E-32 150.1 8.7 72 1-72 150-223 (267)
25 1g29_1 MALK, maltose transport 99.9 1.2E-27 4E-32 156.1 8.8 72 1-72 127-199 (372)
26 2it1_A 362AA long hypothetical 99.9 8.8E-28 3E-32 156.3 8.1 72 1-72 121-193 (362)
27 1v43_A Sugar-binding transport 99.9 1.3E-27 4.5E-32 156.0 8.7 72 1-72 129-201 (372)
28 2ff7_A Alpha-hemolysin translo 99.9 3.6E-27 1.2E-31 146.7 9.7 69 3-72 135-203 (247)
29 2ixe_A Antigen peptide transpo 99.9 2.6E-27 8.8E-32 149.0 8.7 71 2-72 145-216 (271)
30 2pjz_A Hypothetical protein ST 99.9 1.7E-26 5.7E-31 145.0 8.7 69 1-72 115-184 (263)
31 1yqt_A RNAse L inhibitor; ATP- 99.9 2.6E-26 9E-31 155.0 10.0 72 1-72 146-217 (538)
32 1mv5_A LMRA, multidrug resista 99.9 3.9E-27 1.3E-31 146.0 5.4 67 5-72 131-197 (243)
33 3bk7_A ABC transporter ATP-bin 99.9 2.9E-26 9.9E-31 156.6 10.1 72 1-72 216-287 (607)
34 2ghi_A Transport protein; mult 99.9 2.5E-26 8.5E-31 143.7 8.8 65 7-72 149-213 (260)
35 3ozx_A RNAse L inhibitor; ATP 99.9 3E-26 1E-30 154.8 9.2 72 1-72 373-445 (538)
36 3j16_B RLI1P; ribosome recycli 99.9 5.8E-26 2E-30 155.2 9.0 71 2-72 456-527 (608)
37 3nh6_A ATP-binding cassette SU 99.9 1.4E-25 4.6E-30 143.4 9.0 69 3-72 180-248 (306)
38 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 1.5E-25 5E-30 130.9 8.2 67 6-72 50-122 (148)
39 3j16_B RLI1P; ribosome recycli 99.9 1.5E-25 5.2E-30 153.1 9.2 72 1-72 209-280 (608)
40 1yqt_A RNAse L inhibitor; ATP- 99.9 1.9E-25 6.4E-30 150.8 9.5 72 1-72 389-461 (538)
41 3ozx_A RNAse L inhibitor; ATP 99.9 2.1E-25 7.1E-30 150.7 9.4 71 1-72 126-196 (538)
42 2cbz_A Multidrug resistance-as 99.9 8.7E-26 3E-30 139.7 6.9 65 7-72 121-188 (237)
43 3ux8_A Excinuclease ABC, A sub 99.9 1.6E-25 5.5E-30 153.5 8.6 66 7-72 196-263 (670)
44 3bk7_A ABC transporter ATP-bin 99.9 3.2E-25 1.1E-29 151.5 9.3 72 1-72 459-531 (607)
45 2pze_A Cystic fibrosis transme 99.9 3.3E-25 1.1E-29 136.4 6.5 64 8-72 125-189 (229)
46 3gd7_A Fusion complex of cysti 99.9 2.9E-25 1E-29 145.6 5.2 71 1-72 132-213 (390)
47 3b60_A Lipid A export ATP-bind 99.9 2E-24 6.8E-29 146.4 9.4 69 3-72 470-538 (582)
48 3ux8_A Excinuclease ABC, A sub 99.9 2.7E-24 9.1E-29 147.5 10.0 67 6-72 536-605 (670)
49 3b5x_A Lipid A export ATP-bind 99.9 2.4E-24 8.1E-29 146.0 9.0 69 3-72 470-538 (582)
50 3qf4_A ABC transporter, ATP-bi 99.9 3.8E-24 1.3E-28 145.4 9.3 70 2-72 468-537 (587)
51 2yl4_A ATP-binding cassette SU 99.9 4.4E-24 1.5E-28 145.0 9.5 64 8-72 478-541 (595)
52 2bbs_A Cystic fibrosis transme 99.9 2.5E-24 8.7E-29 136.6 6.2 63 9-72 155-218 (290)
53 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.8E-24 2E-28 138.0 8.0 65 8-72 274-344 (365)
54 4a82_A Cystic fibrosis transme 99.9 7.4E-24 2.5E-28 143.6 8.8 67 5-72 469-535 (578)
55 3qf4_B Uncharacterized ABC tra 99.9 8.4E-24 2.9E-28 143.8 7.8 62 10-72 488-549 (598)
56 3pih_A Uvrabc system protein A 99.9 9.3E-23 3.2E-27 144.1 10.0 67 6-72 798-867 (916)
57 2iw3_A Elongation factor 3A; a 99.9 5.2E-23 1.8E-27 146.1 8.7 69 1-72 535-604 (986)
58 2r6f_A Excinuclease ABC subuni 99.9 8.5E-23 2.9E-27 144.7 9.5 72 1-72 832-907 (972)
59 3pih_A Uvrabc system protein A 99.9 4.4E-23 1.5E-27 145.7 7.9 71 2-72 452-525 (916)
60 2vf7_A UVRA2, excinuclease ABC 99.9 1.1E-22 3.9E-27 142.8 8.7 71 2-72 718-792 (842)
61 2ygr_A Uvrabc system protein A 99.9 1.6E-22 5.5E-27 143.5 9.3 72 1-72 850-925 (993)
62 2ygr_A Uvrabc system protein A 99.9 3.6E-22 1.2E-26 141.8 9.0 71 2-72 509-582 (993)
63 3qkt_A DNA double-strand break 99.9 2.5E-22 8.5E-27 128.9 7.1 68 5-72 240-313 (339)
64 2r6f_A Excinuclease ABC subuni 99.9 2.9E-22 1E-26 142.0 7.7 71 2-72 492-565 (972)
65 2iw3_A Elongation factor 3A; a 99.9 2.7E-22 9.3E-27 142.4 6.8 69 1-72 887-957 (986)
66 2vf7_A UVRA2, excinuclease ABC 99.9 5.5E-22 1.9E-26 139.3 8.2 72 1-72 366-440 (842)
67 3g5u_A MCG1178, multidrug resi 99.9 7.6E-22 2.6E-26 142.6 8.1 63 9-72 1167-1229(1284)
68 3g5u_A MCG1178, multidrug resi 99.9 1.8E-21 6.3E-26 140.7 9.4 66 6-72 519-584 (1284)
69 4aby_A DNA repair protein RECN 99.9 2.7E-21 9.3E-26 125.7 8.5 62 10-72 291-355 (415)
70 3kta_B Chromosome segregation 99.8 6.8E-21 2.3E-25 113.5 9.0 66 6-72 57-126 (173)
71 1e69_A Chromosome segregation 99.8 5.9E-21 2E-25 121.7 9.2 66 6-72 212-281 (322)
72 4f4c_A Multidrug resistance pr 99.8 2.8E-21 9.5E-26 140.0 7.3 65 7-72 1211-1275(1321)
73 4ad8_A DNA repair protein RECN 99.8 4.2E-21 1.4E-25 128.7 7.4 64 8-72 391-457 (517)
74 4f4c_A Multidrug resistance pr 99.8 8.3E-21 2.8E-25 137.5 8.4 64 8-72 549-612 (1321)
75 4gp7_A Metallophosphoesterase; 99.8 5.6E-21 1.9E-25 112.7 1.1 62 11-72 81-158 (171)
76 1w1w_A Structural maintenance 99.8 8.7E-19 3E-23 115.1 8.5 65 8-72 328-396 (430)
77 1ye8_A Protein THEP1, hypothet 99.8 1.9E-19 6.6E-24 107.2 4.4 63 6-71 69-138 (178)
78 3auy_A DNA double-strand break 99.8 3.6E-18 1.2E-22 110.7 7.9 63 9-72 276-345 (371)
79 2o5v_A DNA replication and rep 99.7 2.9E-18 9.9E-23 111.5 4.9 62 8-72 259-330 (359)
80 2npi_A Protein CLP1; CLP1-PCF1 99.7 2.3E-18 8E-23 114.7 1.3 65 2-72 226-297 (460)
81 3b85_A Phosphate starvation-in 99.6 1.9E-18 6.4E-23 105.2 -3.6 50 17-72 108-157 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.6 3E-16 1E-20 105.4 5.2 69 3-72 343-416 (525)
83 3thx_B DNA mismatch repair pro 99.6 1.1E-14 3.9E-19 103.3 8.0 70 2-72 724-795 (918)
84 3thx_A DNA mismatch repair pro 99.5 3.4E-13 1.2E-17 95.9 9.1 65 8-72 716-784 (934)
85 1tq4_A IIGP1, interferon-induc 99.4 2.1E-15 7.1E-20 99.6 -3.2 59 14-72 155-234 (413)
86 2o8b_B DNA mismatch repair pro 99.4 4.5E-13 1.6E-17 95.9 7.4 69 3-72 841-911 (1022)
87 1nlf_A Regulatory protein REPA 99.4 5E-13 1.7E-17 83.3 5.5 66 4-72 109-180 (279)
88 1cr0_A DNA primase/helicase; R 99.2 2.8E-11 9.7E-16 75.7 7.5 61 11-72 127-196 (296)
89 1ewq_A DNA mismatch repair pro 99.2 1.4E-11 4.7E-16 86.3 5.7 60 10-72 632-697 (765)
90 3b9q_A Chloroplast SRP recepto 99.2 1.8E-12 6.3E-17 82.4 -0.2 60 2-71 193-255 (302)
91 2pt7_A CAG-ALFA; ATPase, prote 99.2 2.2E-11 7.4E-16 78.2 4.7 50 16-72 225-274 (330)
92 1wb9_A DNA mismatch repair pro 99.2 4E-11 1.4E-15 84.3 6.3 62 10-72 666-729 (800)
93 2og2_A Putative signal recogni 99.1 7.3E-12 2.5E-16 81.5 0.8 60 2-71 250-312 (359)
94 2w0m_A SSO2452; RECA, SSPF, un 99.1 1.7E-10 5.7E-15 69.0 6.0 60 13-72 103-167 (235)
95 3sop_A Neuronal-specific septi 99.1 1.3E-12 4.4E-17 82.0 -3.7 58 6-71 91-148 (270)
96 1znw_A Guanylate kinase, GMP k 99.1 5.7E-13 1.9E-17 80.0 -5.3 46 27-72 137-187 (207)
97 2ehv_A Hypothetical protein PH 99.0 1.3E-10 4.5E-15 70.3 3.8 56 17-72 121-181 (251)
98 1tf7_A KAIC; homohexamer, hexa 98.9 9.2E-11 3.2E-15 78.8 -0.1 53 20-72 126-184 (525)
99 2cvh_A DNA repair and recombin 98.9 3.5E-09 1.2E-13 63.0 6.5 61 12-72 83-155 (220)
100 1pzn_A RAD51, DNA repair and r 98.9 1.3E-09 4.5E-14 70.3 4.8 58 15-72 208-285 (349)
101 2eyu_A Twitching motility prot 98.8 1.1E-08 3.9E-13 63.7 6.9 45 21-72 88-132 (261)
102 1z6g_A Guanylate kinase; struc 98.8 1.1E-11 3.7E-16 75.3 -7.8 61 12-72 121-193 (218)
103 3ec2_A DNA replication protein 98.8 3.1E-08 1E-12 57.8 7.2 45 28-72 97-142 (180)
104 4a74_A DNA repair and recombin 98.8 6.3E-09 2.2E-13 62.2 3.8 59 14-72 100-179 (231)
105 1pui_A ENGB, probable GTP-bind 98.7 3.9E-09 1.3E-13 62.4 2.2 57 9-65 145-202 (210)
106 2qnr_A Septin-2, protein NEDD5 98.7 6.9E-11 2.4E-15 74.9 -5.8 56 9-72 109-166 (301)
107 3aez_A Pantothenate kinase; tr 98.7 6.5E-11 2.2E-15 75.6 -6.6 39 8-46 171-209 (312)
108 3jvv_A Twitching mobility prot 98.7 5.6E-08 1.9E-12 63.1 6.6 43 23-72 188-230 (356)
109 2i3b_A HCR-ntpase, human cance 98.7 1.5E-09 5.1E-14 65.0 -1.3 50 8-57 78-133 (189)
110 2kjq_A DNAA-related protein; s 98.5 2.2E-07 7.5E-12 53.5 4.9 44 27-71 79-123 (149)
111 3asz_A Uridine kinase; cytidin 98.4 7.4E-12 2.5E-16 74.8 -15.9 66 6-71 82-159 (211)
112 1rj9_A FTSY, signal recognitio 98.4 2.4E-08 8.3E-13 63.5 -0.9 54 14-72 203-257 (304)
113 2obl_A ESCN; ATPase, hydrolase 98.4 5.2E-08 1.8E-12 63.0 0.4 54 9-72 167-227 (347)
114 1sxj_E Activator 1 40 kDa subu 98.4 6.7E-07 2.3E-11 56.6 5.1 43 28-72 131-173 (354)
115 2jeo_A Uridine-cytidine kinase 98.3 7.1E-09 2.4E-13 63.5 -4.3 56 6-72 109-164 (245)
116 2dpy_A FLII, flagellum-specifi 98.3 1.6E-07 5.5E-12 62.4 1.0 52 11-72 256-316 (438)
117 2bbw_A Adenylate kinase 4, AK4 98.2 4E-09 1.4E-13 64.5 -7.0 49 6-61 145-198 (246)
118 2v9p_A Replication protein E1; 98.2 8.1E-09 2.8E-13 66.0 -6.6 36 11-53 198-233 (305)
119 1n0w_A DNA repair protein RAD5 98.2 6E-06 2.1E-10 49.5 6.3 43 30-72 118-173 (243)
120 2qag_C Septin-7; cell cycle, c 98.2 2.1E-07 7E-12 61.6 -0.5 53 14-71 119-175 (418)
121 1nij_A Hypothetical protein YJ 98.1 8.4E-08 2.9E-12 61.0 -2.6 48 13-72 141-188 (318)
122 3szr_A Interferon-induced GTP- 98.1 4.5E-06 1.5E-10 57.2 4.8 43 30-72 145-195 (608)
123 1lw7_A Transcriptional regulat 98.0 1.5E-06 5E-11 56.0 0.7 59 13-71 258-327 (365)
124 1udx_A The GTP-binding protein 97.9 1.7E-06 5.9E-11 57.2 0.9 59 8-70 247-305 (416)
125 2ewv_A Twitching motility prot 97.9 2.7E-05 9.3E-10 50.6 6.2 45 21-72 199-243 (372)
126 3lda_A DNA repair protein RAD5 97.8 3.1E-05 1.1E-09 50.9 5.4 43 30-72 272-327 (400)
127 1odf_A YGR205W, hypothetical 3 97.7 2.3E-07 8E-12 58.6 -6.2 40 8-47 129-168 (290)
128 2xau_A PRE-mRNA-splicing facto 97.6 2E-05 6.7E-10 55.4 2.1 63 9-71 186-250 (773)
129 3euj_A Chromosome partition pr 97.5 0.00031 1E-08 47.4 6.9 60 7-70 373-449 (483)
130 2r6a_A DNAB helicase, replicat 97.5 0.00051 1.7E-08 45.4 7.6 58 12-71 294-362 (454)
131 2zr9_A Protein RECA, recombina 97.5 0.00033 1.1E-08 45.2 6.5 52 20-71 126-196 (349)
132 2dr3_A UPF0273 protein PH0284; 97.4 0.00049 1.7E-08 41.1 6.2 43 30-72 127-172 (247)
133 1zp6_A Hypothetical protein AT 97.4 1.2E-05 4.1E-10 46.8 -1.0 54 8-69 104-157 (191)
134 2f1r_A Molybdopterin-guanine d 97.4 8.5E-07 2.9E-11 52.3 -6.3 52 13-64 103-164 (171)
135 2ce7_A Cell division protein F 97.3 0.0009 3.1E-08 44.9 6.5 57 16-72 93-163 (476)
136 2e87_A Hypothetical protein PH 97.3 0.00099 3.4E-08 42.7 6.4 61 8-70 226-287 (357)
137 1s96_A Guanylate kinase, GMP k 97.2 0.00056 1.9E-08 41.4 4.7 39 25-72 101-139 (219)
138 1ls1_A Signal recognition part 97.2 0.0031 1.1E-07 39.6 8.1 54 15-69 164-218 (295)
139 4a1f_A DNAB helicase, replicat 97.1 0.0011 3.8E-08 42.8 5.3 55 12-71 108-164 (338)
140 2qag_B Septin-6, protein NEDD5 97.0 0.00039 1.3E-08 46.2 3.0 50 22-71 167-217 (427)
141 1lw7_A Transcriptional regulat 96.8 0.00077 2.6E-08 43.3 2.9 30 12-41 295-329 (365)
142 1vma_A Cell division protein F 96.8 0.00099 3.4E-08 42.3 3.2 31 12-42 164-197 (306)
143 2z4s_A Chromosomal replication 96.7 0.0044 1.5E-07 40.9 5.7 42 31-72 194-236 (440)
144 2bdt_A BH3686; alpha-beta prot 96.5 6.5E-06 2.2E-10 48.1 -7.8 54 15-72 96-155 (189)
145 1fnn_A CDC6P, cell division co 95.7 0.029 1E-06 35.3 5.6 42 30-72 124-168 (389)
146 1oix_A RAS-related protein RAB 95.4 0.01 3.4E-07 34.4 2.5 36 21-58 153-188 (191)
147 3bh0_A DNAB-like replicative h 95.4 0.037 1.3E-06 34.9 5.2 53 14-71 134-189 (315)
148 2px0_A Flagellar biosynthesis 94.7 0.029 9.9E-07 35.3 3.3 34 21-58 174-207 (296)
149 2rcn_A Probable GTPase ENGC; Y 94.5 0.046 1.6E-06 35.5 4.0 27 1-28 302-328 (358)
150 1l8q_A Chromosomal replication 94.3 0.1 3.5E-06 32.5 5.2 43 29-71 96-139 (324)
151 3e70_C DPA, signal recognition 94.1 0.079 2.7E-06 33.9 4.4 46 19-71 231-277 (328)
152 3b9p_A CG5977-PA, isoform A; A 94.0 0.22 7.6E-06 30.4 6.2 31 15-45 97-127 (297)
153 2z43_A DNA repair and recombin 94.0 0.075 2.6E-06 33.5 4.1 52 20-71 189-256 (324)
154 2gza_A Type IV secretion syste 93.9 0.089 3E-06 33.8 4.4 50 16-72 237-286 (361)
155 2qm8_A GTPase/ATPase; G protei 93.8 0.038 1.3E-06 35.3 2.5 46 12-61 209-260 (337)
156 1u94_A RECA protein, recombina 93.8 0.33 1.1E-05 31.3 6.9 52 20-71 128-198 (356)
157 1v5w_A DMC1, meiotic recombina 93.6 0.11 3.8E-06 33.1 4.4 52 20-71 204-272 (343)
158 4ag6_A VIRB4 ATPase, type IV s 93.5 0.12 4.2E-06 33.2 4.5 43 30-72 261-306 (392)
159 2f9l_A RAB11B, member RAS onco 93.3 0.064 2.2E-06 30.9 2.8 36 22-59 130-165 (199)
160 2ius_A DNA translocase FTSK; n 93.3 0.0099 3.4E-07 40.4 -0.9 45 27-72 292-341 (512)
161 1g5t_A COB(I)alamin adenosyltr 93.3 0.045 1.5E-06 32.9 2.1 52 19-71 106-161 (196)
162 4dgh_A Sulfate permease family 93.2 0.53 1.8E-05 25.6 6.5 43 28-70 45-88 (130)
163 3c8u_A Fructokinase; YP_612366 92.8 0.00014 5E-09 43.1 -9.4 52 13-64 111-174 (208)
164 2eyu_A Twitching motility prot 92.7 2.2E-05 7.7E-10 48.8 -13.4 54 13-69 172-236 (261)
165 3k1j_A LON protease, ATP-depen 92.7 0.015 5.1E-07 39.7 -0.7 46 12-58 182-227 (604)
166 3bos_A Putative DNA replicatio 92.6 0.11 3.8E-06 30.3 3.1 42 30-71 103-146 (242)
167 3hr8_A Protein RECA; alpha and 92.6 1.3 4.6E-05 28.6 8.4 52 20-71 126-196 (356)
168 2r8r_A Sensor protein; KDPD, P 92.4 0.1 3.5E-06 32.1 2.8 44 28-71 81-125 (228)
169 2x8a_A Nuclear valosin-contain 92.1 0.00022 7.4E-09 44.4 -9.6 48 7-56 131-190 (274)
170 2w58_A DNAI, primosome compone 91.9 0.079 2.7E-06 30.7 1.9 43 29-71 113-157 (202)
171 4dgf_A Sulfate transporter sul 91.6 0.77 2.6E-05 25.2 5.7 41 30-70 50-91 (135)
172 3szr_A Interferon-induced GTP- 91.5 0.15 5.2E-06 35.0 3.2 60 11-71 162-223 (608)
173 3oiz_A Antisigma-factor antago 91.3 0.41 1.4E-05 25.1 4.2 42 29-70 41-83 (99)
174 1ni3_A YCHF GTPase, YCHF GTP-b 90.9 0.0016 5.4E-08 42.8 -6.8 39 31-71 139-180 (392)
175 3llo_A Prestin; STAS domain, c 90.8 1.2 4.1E-05 24.4 6.5 40 31-70 63-103 (143)
176 2qgz_A Helicase loader, putati 90.8 0.12 4.1E-06 32.5 2.0 43 29-71 212-256 (308)
177 3ny7_A YCHM protein, sulfate t 90.0 0.63 2.2E-05 25.0 4.3 40 30-70 44-84 (118)
178 1njg_A DNA polymerase III subu 90.0 0.37 1.3E-05 27.7 3.5 39 31-71 126-164 (250)
179 1in4_A RUVB, holliday junction 90.0 0.012 4E-07 37.3 -3.2 39 7-61 156-194 (334)
180 2qby_A CDC6 homolog 1, cell di 89.0 0.11 3.7E-06 32.4 0.7 42 31-72 128-172 (386)
181 1lvg_A Guanylate kinase, GMP k 88.7 0.0048 1.6E-07 36.4 -5.4 34 27-60 120-153 (198)
182 2q6t_A DNAB replication FORK h 88.4 1.9 6.3E-05 28.3 6.3 42 30-71 309-361 (444)
183 1p9r_A General secretion pathw 88.2 0.0012 4.1E-08 43.6 -8.9 25 10-36 290-314 (418)
184 2b8t_A Thymidine kinase; deoxy 88.1 0.88 3E-05 27.5 4.3 37 31-72 89-125 (223)
185 1xp8_A RECA protein, recombina 87.9 3.9 0.00013 26.4 8.0 52 20-71 139-209 (366)
186 1sxj_D Activator 1 41 kDa subu 87.5 0.59 2E-05 29.0 3.4 39 31-71 133-171 (353)
187 3kl4_A SRP54, signal recogniti 86.4 1.5 5E-05 29.2 4.9 38 22-59 170-210 (433)
188 2ka5_A Putative anti-sigma fac 86.2 2.6 9E-05 22.7 6.7 43 28-70 48-91 (125)
189 2orv_A Thymidine kinase; TP4A 85.1 2.2 7.4E-05 26.3 4.9 37 30-72 89-125 (234)
190 2oap_1 GSPE-2, type II secreti 85.1 4.5E-05 1.5E-09 51.5 -17.4 49 12-72 399-449 (511)
191 2kln_A Probable sulphate-trans 84.8 2.4 8.1E-05 22.9 4.6 40 31-70 47-87 (130)
192 3t34_A Dynamin-related protein 84.6 0.68 2.3E-05 29.4 2.6 56 14-70 155-211 (360)
193 2chg_A Replication factor C sm 83.7 2.2 7.4E-05 24.1 4.4 40 30-71 101-140 (226)
194 3llm_A ATP-dependent RNA helic 83.7 3.2 0.00011 24.5 5.3 53 15-69 162-215 (235)
195 1th8_B Anti-sigma F factor ant 82.8 3.5 0.00012 21.3 4.8 47 24-70 34-82 (116)
196 1x52_A Pelota homolog, CGI-17; 82.5 2.1 7.3E-05 23.6 3.8 46 26-71 48-95 (124)
197 2q6t_A DNAB replication FORK h 82.5 7.2 0.00025 25.5 6.9 55 12-71 263-318 (444)
198 1q57_A DNA primase/helicase; d 82.2 6.9 0.00024 25.9 6.8 42 30-71 353-402 (503)
199 3co5_A Putative two-component 81.7 4.7 0.00016 22.0 5.8 40 31-71 75-114 (143)
200 2i1q_A DNA repair and recombin 81.3 1.6 5.3E-05 27.2 3.3 42 30-71 203-257 (322)
201 1sbo_A Putative anti-sigma fac 80.8 4.1 0.00014 20.8 7.0 45 26-70 37-83 (110)
202 3q6v_A Beta-lactamase; metallo 78.5 3.6 0.00012 23.9 4.1 37 32-71 35-71 (233)
203 1xx6_A Thymidine kinase; NESG, 78.5 4.3 0.00015 23.8 4.4 36 31-71 81-116 (191)
204 1jr3_D DNA polymerase III, del 78.2 2.4 8.1E-05 26.5 3.4 34 25-58 70-103 (343)
205 2dy1_A Elongation factor G; tr 78.0 8.9 0.00031 26.6 6.4 40 27-71 95-134 (665)
206 3d8b_A Fidgetin-like protein 1 77.9 8.7 0.0003 24.3 6.0 20 21-40 166-185 (357)
207 2vo9_A EAD500, L-alanyl-D-glut 77.8 4.5 0.00016 23.7 4.4 30 41-70 30-59 (179)
208 2orw_A Thymidine kinase; TMTK, 77.8 2.2 7.4E-05 24.7 2.9 36 31-71 76-111 (184)
209 2qtf_A Protein HFLX, GTP-bindi 76.7 0.9 3.1E-05 29.3 1.2 47 11-61 302-353 (364)
210 3h4m_A Proteasome-activating n 75.9 5 0.00017 24.1 4.4 38 22-59 101-148 (285)
211 1jr3_A DNA polymerase III subu 75.6 2.6 8.8E-05 26.2 3.0 40 30-71 118-157 (373)
212 3bgw_A DNAB-like replicative h 75.5 5.2 0.00018 26.4 4.6 53 14-71 263-318 (444)
213 3mca_B Protein DOM34, elongati 75.4 9.1 0.00031 25.1 5.7 39 33-71 310-348 (390)
214 3cf0_A Transitional endoplasmi 75.4 7.2 0.00025 24.0 5.0 49 23-71 100-162 (301)
215 2yhs_A FTSY, cell division pro 75.1 2.2 7.6E-05 29.0 2.8 47 19-71 398-447 (503)
216 4eyb_A Beta-lactamase NDM-1; m 75.1 5.3 0.00018 24.2 4.3 36 33-71 85-120 (270)
217 3t6o_A Sulfate transporter/ant 75.0 7.4 0.00025 20.6 5.2 41 30-70 46-88 (121)
218 1xp2_A EAD500, PLY500, L-alany 74.5 6.4 0.00022 23.3 4.4 30 41-70 30-59 (179)
219 1zxx_A 6-phosphofructokinase; 74.4 14 0.00049 23.6 6.8 45 20-70 174-221 (319)
220 2hqs_H Peptidoglycan-associate 74.0 8.3 0.00028 20.7 4.8 42 30-71 3-45 (118)
221 1gml_A T-complex protein 1 sub 72.8 9.7 0.00033 22.0 4.9 42 29-70 25-85 (178)
222 3bh0_A DNAB-like replicative h 72.6 6 0.0002 24.7 4.2 41 31-71 179-229 (315)
223 1jql_B DNA polymerase III, del 72.4 6.1 0.00021 21.7 3.8 43 27-71 72-114 (140)
224 3bt7_A TRNA (uracil-5-)-methyl 72.0 5.9 0.0002 25.2 4.1 34 31-72 295-328 (369)
225 2j9r_A Thymidine kinase; TK1, 71.5 2.9 9.9E-05 25.3 2.5 36 31-71 101-136 (214)
226 1pfk_A Phosphofructokinase; tr 71.5 17 0.00058 23.2 6.7 44 21-70 176-222 (320)
227 3zxn_A RSBS, anti-sigma-factor 71.5 9.9 0.00034 20.5 5.7 47 24-70 34-82 (123)
228 1iqp_A RFCS; clamp loader, ext 70.4 8.1 0.00028 23.4 4.4 39 30-70 109-147 (327)
229 3u61_B DNA polymerase accessor 70.1 8.8 0.0003 23.5 4.5 39 31-71 105-144 (324)
230 4fcw_A Chaperone protein CLPB; 70.1 7.7 0.00026 23.4 4.2 35 24-59 111-146 (311)
231 1h4x_A SPOIIAA, anti-sigma F f 70.1 9.6 0.00033 19.7 4.4 40 31-70 41-81 (117)
232 2v1u_A Cell division control p 68.9 4.3 0.00015 25.2 2.9 41 31-71 130-175 (387)
233 1w4r_A Thymidine kinase; type 68.6 11 0.00038 22.4 4.5 38 29-72 89-126 (195)
234 3iog_A Beta-lactamase; hydrola 68.0 6 0.00021 22.8 3.3 36 33-71 33-68 (227)
235 1a6d_A Thermosome (alpha subun 67.3 8.3 0.00029 26.3 4.2 42 29-70 231-291 (545)
236 1sxj_B Activator 1 37 kDa subu 66.3 6.5 0.00022 23.7 3.3 39 31-71 107-145 (323)
237 4hyl_A Stage II sporulation pr 66.2 12 0.00041 19.4 4.1 43 27-70 38-81 (117)
238 1a6d_B Thermosome (beta subuni 65.6 12 0.0004 25.5 4.7 42 29-70 232-292 (543)
239 2a6p_A Possible phosphoglycera 65.5 11 0.00037 21.9 4.1 23 49-71 128-152 (208)
240 3n70_A Transport activator; si 65.1 9.5 0.00032 20.7 3.6 39 31-71 76-114 (145)
241 2dpm_A M.dpnii 1, protein (ade 65.1 22 0.00076 22.1 6.6 42 31-72 187-242 (284)
242 1ega_A Protein (GTP-binding pr 65.0 9.5 0.00032 23.6 3.9 42 14-62 101-145 (301)
243 3cmw_A Protein RECA, recombina 64.5 40 0.0014 26.5 7.7 51 21-71 798-867 (1706)
244 3nwy_A Uridylate kinase; allos 64.0 13 0.00044 23.2 4.4 29 42-70 67-95 (281)
245 1ixk_A Methyltransferase; open 63.9 12 0.0004 23.4 4.2 41 31-71 187-247 (315)
246 3io5_A Recombination and repai 63.8 27 0.00092 22.6 8.2 56 16-71 92-170 (333)
247 2g1p_A DNA adenine methylase; 62.9 24 0.00082 21.8 6.1 41 32-72 175-229 (278)
248 3p9d_A T-complex protein 1 sub 61.8 16 0.00056 24.9 4.8 40 31-70 241-299 (559)
249 1ypw_A Transitional endoplasmi 61.7 11 0.00038 26.7 4.1 23 21-43 287-309 (806)
250 2vhj_A Ntpase P4, P4; non- hyd 61.2 30 0.001 22.3 6.8 52 19-71 170-234 (331)
251 1e9r_A Conjugal transfer prote 60.8 3.5 0.00012 26.6 1.4 38 32-72 280-317 (437)
252 3r7a_A Phosphoglycerate mutase 60.6 11 0.00039 22.1 3.6 23 49-71 155-182 (237)
253 3k7i_B IHH, HHG-2, indian hedg 60.5 4.2 0.00014 24.3 1.6 32 29-60 69-100 (187)
254 3p9d_D T-complex protein 1 sub 60.0 21 0.00073 24.2 5.1 42 29-70 229-289 (528)
255 3ajd_A Putative methyltransfer 59.9 4.8 0.00017 24.4 1.9 41 31-71 156-212 (274)
256 1h2e_A Phosphatase, YHFR; hydr 59.7 14 0.00046 21.4 3.8 22 50-71 127-150 (207)
257 1yf3_A DNA adenine methylase; 59.5 27 0.00093 21.3 6.2 40 32-71 165-212 (259)
258 3bgw_A DNAB-like replicative h 59.4 16 0.00054 24.1 4.4 42 30-71 307-358 (444)
259 1ne7_A Glucosamine-6-phosphate 59.4 7.3 0.00025 24.1 2.7 44 14-57 202-260 (289)
260 1we3_A CPN60(groel); chaperoni 59.1 8.1 0.00028 26.4 3.0 38 29-71 213-250 (543)
261 1a5t_A Delta prime, HOLB; zinc 58.8 6.6 0.00023 24.5 2.4 40 30-71 107-146 (334)
262 3lxx_A GTPase IMAP family memb 58.8 25 0.00084 20.5 6.0 43 29-71 110-154 (239)
263 3p9d_G T-complex protein 1 sub 58.7 24 0.00084 24.0 5.3 42 29-70 236-296 (550)
264 2zts_A Putative uncharacterize 58.5 8.2 0.00028 22.4 2.7 43 29-71 133-180 (251)
265 2lpm_A Two-component response 58.2 13 0.00044 20.1 3.3 37 28-70 50-86 (123)
266 1ujc_A Phosphohistidine phosph 58.1 15 0.00052 20.4 3.7 23 50-72 86-109 (161)
267 1ojl_A Transcriptional regulat 57.4 25 0.00086 21.7 4.9 40 31-71 96-145 (304)
268 3c7t_A Ecdysteroid-phosphate p 57.4 17 0.00059 21.7 4.1 22 50-71 167-192 (263)
269 3cmw_A Protein RECA, recombina 57.2 70 0.0024 25.2 8.4 49 23-71 451-518 (1706)
270 2gno_A DNA polymerase III, gam 56.9 7 0.00024 24.4 2.3 39 31-71 82-120 (305)
271 3hu3_A Transitional endoplasmi 56.2 16 0.00054 24.5 4.0 19 22-40 288-306 (489)
272 3gp3_A 2,3-bisphosphoglycerate 55.7 17 0.00056 21.7 3.7 23 49-71 164-190 (257)
273 3d4i_A STS-2 protein; PGM, 2H- 55.3 21 0.00072 21.4 4.2 23 50-72 177-203 (273)
274 1b9m_A Protein (mode); DNA-bin 55.0 1.4 4.9E-05 26.5 -1.1 29 5-33 65-93 (265)
275 3f6c_A Positive transcription 54.4 20 0.0007 18.3 5.7 37 30-70 45-81 (134)
276 4emb_A 2,3-bisphosphoglycerate 54.4 17 0.0006 21.9 3.7 23 49-71 182-208 (274)
277 1q3q_A Thermosome alpha subuni 54.4 10 0.00034 25.9 2.8 42 29-70 234-294 (548)
278 1dmg_A Ribosomal protein L4; a 54.3 28 0.00096 21.2 4.6 49 20-70 105-156 (225)
279 2qz4_A Paraplegin; AAA+, SPG7, 54.3 30 0.001 20.1 6.4 20 23-42 90-109 (262)
280 2vgn_A DOM34; translation term 53.8 32 0.0011 22.4 5.0 39 33-71 316-354 (386)
281 3mbk_A Ubiquitin-associated an 53.8 5.6 0.00019 24.0 1.4 24 49-72 167-194 (264)
282 3aq1_B Thermosome subunit; gro 53.7 8.3 0.00028 26.0 2.3 42 29-70 185-245 (500)
283 3ek6_A Uridylate kinase; UMPK 53.4 35 0.0012 20.6 5.0 33 38-70 23-55 (243)
284 3cmu_A Protein RECA, recombina 53.3 75 0.0026 25.6 7.5 49 23-71 800-867 (2050)
285 3nhm_A Response regulator; pro 53.2 21 0.00073 18.1 6.5 39 29-70 45-84 (133)
286 3f6p_A Transcriptional regulat 52.9 21 0.00073 18.0 5.7 37 29-70 44-80 (120)
287 3cu5_A Two component transcrip 52.8 23 0.0008 18.5 5.9 38 29-70 47-84 (141)
288 1tue_A Replication protein E1; 52.6 24 0.00082 21.3 4.0 12 30-41 102-113 (212)
289 3m0z_A Putative aldolase; MCSG 52.1 3.8 0.00013 25.5 0.5 22 37-58 189-210 (249)
290 2yv5_A YJEQ protein; hydrolase 52.0 0.41 1.4E-05 29.9 -4.0 25 2-26 275-300 (302)
291 1tmy_A CHEY protein, TMY; chem 52.0 21 0.00073 17.8 5.6 37 30-70 46-82 (120)
292 1iy2_A ATP-dependent metallopr 51.9 0.039 1.3E-06 33.8 -8.6 29 10-40 166-194 (278)
293 4a3s_A 6-phosphofructokinase; 51.8 23 0.00078 22.5 4.1 45 21-70 175-221 (319)
294 1mqo_A Beta-lactamase II; alph 51.7 32 0.0011 19.8 4.8 36 33-71 51-86 (227)
295 3iyg_A T-complex protein 1 sub 51.5 15 0.00053 24.8 3.4 42 29-70 223-283 (529)
296 1e58_A Phosphoglycerate mutase 51.4 25 0.00086 20.7 4.1 24 48-71 156-183 (249)
297 3m6y_A 4-hydroxy-2-oxoglutarat 51.3 4 0.00014 25.7 0.5 21 38-58 213-233 (275)
298 1qo0_D AMIR; binding protein, 51.1 23 0.0008 19.7 3.7 37 29-70 50-86 (196)
299 1qhf_A Protein (phosphoglycera 51.1 26 0.00089 20.6 4.1 24 48-71 154-181 (240)
300 3e9c_A ZGC:56074; histidine ph 50.9 22 0.00076 21.4 3.8 9 63-71 175-183 (265)
301 1fzt_A Phosphoglycerate mutase 50.9 23 0.00077 20.4 3.7 23 49-71 137-163 (211)
302 3m4x_A NOL1/NOP2/SUN family pr 50.1 13 0.00043 24.9 2.7 16 30-45 174-189 (456)
303 2jk1_A HUPR, hydrogenase trans 50.1 26 0.00088 18.1 5.5 38 29-70 42-79 (139)
304 3td3_A Outer membrane protein 49.8 28 0.00096 18.5 4.5 37 35-71 16-53 (123)
305 4a7w_A Uridylate kinase; trans 49.5 40 0.0014 20.2 5.0 30 41-70 24-53 (240)
306 3cmu_A Protein RECA, recombina 49.4 75 0.0026 25.6 7.0 25 20-44 1492-1518(2050)
307 1h1n_A Endo type cellulase ENG 49.4 43 0.0015 20.5 5.4 34 39-72 61-94 (305)
308 2p65_A Hypothetical protein PF 49.3 2.5 8.7E-05 23.2 -0.6 40 31-70 115-159 (187)
309 2wji_A Ferrous iron transport 49.0 30 0.001 18.6 4.4 20 52-71 97-116 (165)
310 2aiz_P Outer membrane protein 48.9 31 0.0011 18.8 6.3 44 28-71 25-69 (134)
311 3p9d_H T-complex protein 1 sub 48.9 29 0.001 23.8 4.4 40 31-70 244-302 (568)
312 2hhj_A Bisphosphoglycerate mut 48.7 25 0.00084 21.2 3.7 24 48-71 161-188 (267)
313 3a10_A Response regulator; pho 48.5 24 0.00083 17.4 6.3 38 29-70 43-80 (116)
314 3eod_A Protein HNR; response r 48.2 26 0.0009 17.7 4.8 17 29-45 49-65 (130)
315 4eo9_A 2,3-bisphosphoglycerate 48.1 6.1 0.00021 24.0 0.9 10 62-71 197-206 (268)
316 3iyg_B T-complex protein 1 sub 47.9 35 0.0012 23.0 4.6 42 29-70 219-280 (513)
317 3kkk_A Phosphoglycerate mutase 47.8 6.2 0.00021 23.6 0.9 24 48-71 165-192 (258)
318 1wxx_A TT1595, hypothetical pr 47.6 18 0.00061 23.1 3.1 17 30-46 278-294 (382)
319 3eul_A Possible nitrate/nitrit 47.6 30 0.001 18.2 5.9 37 30-70 60-96 (152)
320 3hno_A Pyrophosphate-dependent 47.6 41 0.0014 22.3 4.8 45 21-70 196-246 (419)
321 1iok_A Chaperonin 60; chaperon 47.6 5.2 0.00018 27.4 0.6 38 29-71 215-252 (545)
322 1mvo_A PHOP response regulator 47.4 28 0.00095 17.8 6.1 37 30-70 46-82 (136)
323 2j5v_A Glutamate 5-kinase; pro 47.3 38 0.0013 21.8 4.6 32 40-71 19-50 (367)
324 3l6n_A Metallo-beta-lactamase; 47.2 18 0.00061 20.7 2.8 37 32-71 40-76 (219)
325 3mxo_A Serine/threonine-protei 47.0 29 0.001 19.8 3.8 24 48-71 113-143 (202)
326 3o63_A Probable thiamine-phosp 46.9 46 0.0016 20.2 6.3 44 25-68 50-101 (243)
327 2hig_A 6-phospho-1-fructokinas 46.9 34 0.0012 23.3 4.4 46 20-70 277-324 (487)
328 3hjg_A Putative alpha-ribazole 46.9 25 0.00087 20.4 3.5 24 48-71 125-149 (213)
329 1ass_A Thermosome; chaperonin, 46.9 26 0.00089 19.9 3.4 41 30-70 20-79 (159)
330 4b4t_K 26S protease regulatory 46.5 61 0.0021 21.4 6.6 51 21-71 255-319 (428)
331 1srr_A SPO0F, sporulation resp 46.1 28 0.00096 17.4 6.4 38 29-70 45-82 (124)
332 2jjq_A Uncharacterized RNA met 46.0 60 0.0021 21.2 5.8 35 31-71 353-387 (425)
333 4dcu_A GTP-binding protein ENG 46.0 27 0.00091 22.8 3.8 50 18-71 89-139 (456)
334 3rtk_A 60 kDa chaperonin 2; he 45.9 13 0.00045 25.4 2.4 37 29-70 213-249 (546)
335 3jte_A Response regulator rece 45.6 31 0.0011 17.8 5.4 38 29-70 47-84 (143)
336 2rjn_A Response regulator rece 45.6 33 0.0011 18.1 6.0 38 29-70 49-86 (154)
337 3obw_A Protein pelota homolog; 45.6 35 0.0012 22.1 4.2 38 33-71 304-341 (364)
338 2qni_A AGR_C_517P, uncharacter 45.5 36 0.0012 20.0 4.1 23 49-71 138-163 (219)
339 3o8o_B 6-phosphofructokinase s 45.3 83 0.0029 22.7 7.2 49 21-70 203-253 (766)
340 3d8h_A Glycolytic phosphoglyce 45.3 35 0.0012 20.5 4.1 24 48-71 174-201 (267)
341 1ixz_A ATP-dependent metallopr 45.2 0.039 1.3E-06 33.2 -9.2 43 10-54 142-196 (254)
342 4e7p_A Response regulator; DNA 45.2 33 0.0011 18.0 5.9 38 29-70 64-101 (150)
343 3ilx_A First ORF in transposon 45.1 38 0.0013 18.7 5.1 50 18-70 21-70 (143)
344 3n1g_B Desert hedgehog protein 45.0 34 0.0011 20.0 3.7 40 31-70 63-108 (170)
345 1kp8_A Groel protein; chaperon 44.9 9.1 0.00031 26.2 1.5 37 29-70 214-250 (547)
346 1dbw_A Transcriptional regulat 44.7 30 0.001 17.4 5.6 38 29-70 45-82 (126)
347 4a8j_C Elongator complex prote 44.6 15 0.0005 23.3 2.3 41 30-72 148-195 (280)
348 3iyg_H T-complex protein 1 sub 44.5 18 0.00061 24.5 2.8 43 28-70 222-283 (515)
349 1ex9_A Lactonizing lipase; alp 44.5 50 0.0017 19.9 5.8 49 24-72 31-82 (285)
350 2bjv_A PSP operon transcriptio 44.1 44 0.0015 19.7 4.3 27 31-58 100-126 (265)
351 1sxj_C Activator 1 40 kDa subu 44.0 38 0.0013 20.9 4.1 39 30-70 109-147 (340)
352 2qxy_A Response regulator; reg 43.8 33 0.0011 17.6 5.8 37 29-70 46-82 (142)
353 3b2n_A Uncharacterized protein 43.6 33 0.0011 17.6 5.8 37 30-70 48-84 (133)
354 3fjy_A Probable MUTT1 protein; 43.6 29 0.00098 21.9 3.6 20 52-71 276-295 (364)
355 1qkk_A DCTD, C4-dicarboxylate 43.6 36 0.0012 17.9 5.4 37 30-70 46-82 (155)
356 2qzj_A Two-component response 43.5 34 0.0012 17.7 4.6 18 29-46 46-63 (136)
357 1jcn_A Inosine monophosphate d 43.4 4.2 0.00014 27.2 -0.3 41 26-72 28-69 (514)
358 3cz5_A Two-component response 43.4 36 0.0012 17.9 6.7 38 29-70 49-86 (153)
359 1a7t_A Metallo-beta-lactamase; 43.2 41 0.0014 19.4 4.1 36 33-71 47-82 (232)
360 1rii_A 2,3-bisphosphoglycerate 43.2 39 0.0013 20.4 4.1 23 49-71 157-183 (265)
361 3agj_B Protein pelota homolog; 43.2 33 0.0011 22.0 3.8 39 33-71 291-329 (358)
362 1zgz_A Torcad operon transcrip 42.6 32 0.0011 17.1 6.5 37 29-70 44-80 (122)
363 4b4t_H 26S protease regulatory 42.6 76 0.0026 21.4 6.0 51 21-71 292-356 (467)
364 1k66_A Phytochrome response re 42.6 35 0.0012 17.5 4.2 17 30-46 61-77 (149)
365 4b4t_I 26S protease regulatory 42.3 75 0.0026 21.3 6.1 51 21-71 265-329 (437)
366 3opy_A 6-phosphofructo-1-kinas 42.3 92 0.0032 23.3 6.2 50 20-70 408-459 (989)
367 3grc_A Sensor protein, kinase; 42.3 35 0.0012 17.5 5.8 39 29-70 48-87 (140)
368 3heb_A Response regulator rece 42.2 37 0.0013 17.8 4.2 39 29-70 57-96 (152)
369 3kht_A Response regulator; PSI 42.2 36 0.0012 17.6 5.0 17 29-45 49-65 (144)
370 3n53_A Response regulator rece 42.1 36 0.0012 17.5 4.0 16 30-45 45-60 (140)
371 3i42_A Response regulator rece 42.0 34 0.0012 17.2 5.3 39 29-70 45-84 (127)
372 3lua_A Response regulator rece 41.8 36 0.0012 17.5 5.9 39 30-70 49-88 (140)
373 1fs5_A Glucosamine-6-phosphate 41.8 28 0.00097 21.0 3.2 36 13-48 201-251 (266)
374 2r2a_A Uncharacterized protein 41.7 3.6 0.00012 24.2 -0.8 42 31-72 87-132 (199)
375 2lse_A Four helix bundle prote 47.7 5.5 0.00019 20.5 0.0 26 35-60 14-39 (101)
376 4hl2_A Beta-lactamase NDM-1; s 41.5 51 0.0017 19.1 4.8 36 33-71 58-93 (243)
377 3f3k_A Uncharacterized protein 41.4 38 0.0013 20.3 3.8 9 63-71 168-176 (265)
378 3hdg_A Uncharacterized protein 41.4 36 0.0012 17.4 4.8 37 30-70 50-86 (137)
379 2as0_A Hypothetical protein PH 41.4 21 0.00072 22.8 2.7 17 30-46 288-304 (396)
380 3oon_A Outer membrane protein 41.2 40 0.0014 17.8 4.0 37 35-71 19-56 (123)
381 1vec_A ATP-dependent RNA helic 41.2 8.6 0.0003 21.7 0.8 40 30-69 145-184 (206)
382 1d2n_A N-ethylmaleimide-sensit 41.1 42 0.0014 19.9 3.9 17 24-40 117-133 (272)
383 3v2d_F 50S ribosomal protein L 41.0 49 0.0017 19.8 4.2 49 20-70 106-158 (210)
384 2fhx_A SPM-1; metallo-beta-lac 40.6 52 0.0018 19.0 4.6 36 33-71 41-76 (246)
385 2chq_A Replication factor C sm 40.4 5.2 0.00018 24.1 -0.3 39 30-70 101-139 (319)
386 2kgw_A Outer membrane protein 40.3 43 0.0015 17.9 4.3 38 34-71 25-63 (129)
387 3o8o_A 6-phosphofructokinase s 40.1 1E+02 0.0036 22.3 6.3 49 21-70 204-254 (787)
388 1svm_A Large T antigen; AAA+ f 40.1 0.17 5.8E-06 33.0 -7.3 34 9-42 278-312 (377)
389 3ko1_A Chaperonin; 9-fold symm 40.0 65 0.0022 22.0 5.0 42 29-70 241-301 (553)
390 3hzh_A Chemotaxis response reg 40.0 43 0.0015 17.8 6.0 36 31-70 83-118 (157)
391 3ruv_A Chaperonin, CPN; double 39.9 31 0.0011 23.4 3.5 42 29-70 227-287 (543)
392 3syl_A Protein CBBX; photosynt 39.9 60 0.002 19.4 7.3 39 31-70 130-176 (309)
393 3agd_A Salt-tolerant glutamina 39.8 37 0.0013 23.0 3.7 41 30-70 402-443 (456)
394 3gt7_A Sensor protein; structu 39.8 42 0.0015 17.7 5.9 39 29-70 49-88 (154)
395 2b4a_A BH3024; flavodoxin-like 39.8 39 0.0013 17.3 4.6 37 30-70 59-95 (138)
396 3crn_A Response regulator rece 39.7 39 0.0013 17.2 5.9 38 29-70 45-82 (132)
397 1sqg_A SUN protein, FMU protei 39.3 17 0.00059 23.6 2.1 15 31-45 315-329 (429)
398 1a04_A Nitrate/nitrite respons 39.2 51 0.0017 18.5 5.6 37 30-70 50-86 (215)
399 1qvr_A CLPB protein; coiled co 39.0 26 0.00088 24.9 3.0 27 31-58 660-686 (854)
400 3ilh_A Two component response 38.9 41 0.0014 17.2 6.6 38 30-70 59-99 (146)
401 3e2i_A Thymidine kinase; Zn-bi 38.9 64 0.0022 19.5 4.7 36 30-70 100-135 (219)
402 4b4t_J 26S protease regulatory 38.8 83 0.0028 20.8 6.6 51 21-71 231-295 (405)
403 1sxj_A Activator 1 95 kDa subu 38.7 19 0.00066 23.9 2.3 39 30-71 147-187 (516)
404 2qsj_A DNA-binding response re 38.7 43 0.0015 17.5 3.9 37 30-70 49-85 (154)
405 3rqi_A Response regulator prot 38.4 44 0.0015 18.4 3.6 38 29-70 49-86 (184)
406 2it2_A UPF0130 protein PH1069; 38.4 25 0.00086 21.0 2.5 27 30-72 54-80 (200)
407 1z9d_A Uridylate kinase, UK, U 38.3 64 0.0022 19.3 5.0 33 38-70 21-53 (252)
408 1jjv_A Dephospho-COA kinase; P 38.2 1.9 6.5E-05 24.8 -2.4 53 15-71 61-113 (206)
409 1k68_A Phytochrome response re 38.1 41 0.0014 17.0 5.2 17 30-46 54-70 (140)
410 1xpj_A Hypothetical protein; s 37.8 37 0.0013 18.0 3.0 21 51-71 28-48 (126)
411 3t8y_A CHEB, chemotaxis respon 37.5 49 0.0017 17.7 5.8 37 29-70 69-105 (164)
412 1hqc_A RUVB; extended AAA-ATPa 37.4 67 0.0023 19.3 4.8 28 30-58 89-116 (324)
413 1dz3_A Stage 0 sporulation pro 37.4 42 0.0014 17.0 6.5 38 30-70 47-84 (130)
414 2qv5_A AGR_C_5032P, uncharacte 37.4 40 0.0014 20.9 3.4 28 44-71 191-218 (261)
415 3g40_A Na-K-CL cotransporter; 37.2 80 0.0027 20.1 5.4 55 11-68 89-143 (294)
416 2iut_A DNA translocase FTSK; n 37.2 42 0.0014 23.3 3.8 39 34-72 346-387 (574)
417 1p2f_A Response regulator; DRR 37.2 56 0.0019 18.3 5.1 37 30-70 42-78 (220)
418 3dtn_A Putative methyltransfer 37.1 40 0.0014 19.3 3.3 40 31-70 109-148 (234)
419 1kgs_A DRRD, DNA binding respo 37.0 57 0.0019 18.3 6.4 38 29-70 44-81 (225)
420 1yio_A Response regulatory pro 37.0 55 0.0019 18.2 4.9 37 30-70 47-83 (208)
421 1yfk_A Phosphoglycerate mutase 37.0 52 0.0018 19.6 3.9 23 49-71 160-186 (262)
422 3f2i_A ALR0221 protein; alpha- 36.9 34 0.0012 19.4 2.9 12 61-72 100-111 (172)
423 4b4t_L 26S protease subunit RP 36.8 92 0.0031 20.7 7.1 51 21-71 264-328 (437)
424 2a1f_A Uridylate kinase; PYRH, 36.7 67 0.0023 19.1 5.0 32 39-70 23-54 (247)
425 4dad_A Putative pilus assembly 36.7 46 0.0016 17.2 5.6 37 30-70 66-102 (146)
426 3lxw_A GTPase IMAP family memb 36.6 66 0.0023 19.0 4.4 53 18-71 89-147 (247)
427 2r25_B Osmosensing histidine p 36.6 45 0.0015 17.1 6.4 38 30-70 51-88 (133)
428 4h3d_A 3-dehydroquinate dehydr 36.6 73 0.0025 19.4 4.9 56 11-72 91-148 (258)
429 4b3f_X DNA-binding protein smu 36.5 1E+02 0.0035 21.1 7.3 51 17-71 191-241 (646)
430 2qr3_A Two-component system re 36.4 45 0.0015 17.0 5.7 14 29-42 45-58 (140)
431 3hdv_A Response regulator; PSI 36.3 45 0.0015 16.9 4.9 36 32-70 53-88 (136)
432 3gl9_A Response regulator; bet 36.1 44 0.0015 16.8 5.4 19 28-46 43-61 (122)
433 3o8b_A HCV NS3 protease/helica 36.0 98 0.0034 21.8 5.5 34 30-64 317-350 (666)
434 3eqz_A Response regulator; str 35.9 45 0.0015 16.8 4.1 36 31-70 46-81 (135)
435 1v37_A Phosphoglycerate mutase 35.8 35 0.0012 19.2 2.8 20 49-71 114-133 (177)
436 3kyj_B CHEY6 protein, putative 35.8 48 0.0016 17.1 3.5 15 31-45 60-74 (145)
437 2rbk_A Putative uncharacterize 35.7 45 0.0015 19.5 3.4 19 52-70 25-43 (261)
438 3ndz_A Endoglucanase D; cellot 35.2 72 0.0025 20.0 4.5 34 39-72 72-105 (345)
439 3kto_A Response regulator rece 35.1 38 0.0013 17.4 2.8 37 30-70 49-87 (136)
440 3cf2_A TER ATPase, transitiona 35.1 1.2E+02 0.0039 22.0 5.8 20 21-40 287-306 (806)
441 1jbk_A CLPB protein; beta barr 34.9 21 0.0007 19.3 1.7 42 30-71 114-159 (195)
442 2jjx_A Uridylate kinase, UMP k 34.7 75 0.0026 19.1 5.1 31 39-69 27-57 (255)
443 3hv2_A Response regulator/HD d 34.6 52 0.0018 17.2 6.1 38 29-70 56-93 (153)
444 3o8l_A 6-phosphofructokinase, 34.5 99 0.0034 22.3 5.3 50 19-70 577-628 (762)
445 3rrv_A Enoyl-COA hydratase/iso 34.4 80 0.0027 19.3 5.0 35 35-69 41-78 (276)
446 1vpe_A Phosphoglycerate kinase 34.4 51 0.0017 21.9 3.7 30 43-72 30-59 (398)
447 2pr7_A Haloacid dehalogenase/e 34.3 49 0.0017 16.8 6.4 39 33-71 3-42 (137)
448 3lte_A Response regulator; str 34.2 48 0.0016 16.7 6.2 18 29-46 48-65 (132)
449 3t15_A Ribulose bisphosphate c 34.2 80 0.0027 19.2 5.6 14 29-42 97-110 (293)
450 2nly_A BH1492 protein, diverge 34.1 81 0.0028 19.3 4.4 28 44-71 165-192 (245)
451 1zmr_A Phosphoglycerate kinase 34.1 52 0.0018 21.8 3.7 30 43-72 31-60 (387)
452 1tlj_A Hypothetical UPF0130 pr 34.0 30 0.001 20.9 2.4 12 31-42 51-62 (213)
453 1php_A 3-phosphoglycerate kina 33.9 53 0.0018 21.8 3.7 30 43-72 31-60 (394)
454 3q3v_A Phosphoglycerate kinase 33.7 53 0.0018 21.9 3.7 29 44-72 37-65 (403)
455 2a9o_A Response regulator; ess 33.6 46 0.0016 16.3 6.5 36 30-70 44-79 (120)
456 1v6s_A Phosphoglycerate kinase 33.4 54 0.0019 21.7 3.7 30 43-72 29-58 (390)
457 3sm3_A SAM-dependent methyltra 33.4 47 0.0016 18.7 3.2 38 33-70 103-141 (235)
458 1ug6_A Beta-glycosidase; gluco 33.1 74 0.0025 21.0 4.4 31 41-71 88-118 (431)
459 3ktn_A Carbohydrate kinase, PF 33.1 46 0.0016 20.5 3.3 42 27-68 125-166 (346)
460 2ftc_D Mitochondrial ribosomal 33.0 74 0.0025 18.5 4.8 47 20-69 74-123 (175)
461 2rdm_A Response regulator rece 33.0 50 0.0017 16.5 6.7 36 31-70 50-86 (132)
462 3r0j_A Possible two component 33.0 73 0.0025 18.4 6.2 38 29-70 65-102 (250)
463 2frx_A Hypothetical protein YE 33.0 39 0.0013 22.5 3.1 14 31-44 187-200 (479)
464 2j78_A Beta-glucosidase A; fam 32.8 1.1E+02 0.0038 20.5 5.3 33 39-71 108-142 (468)
465 2qvg_A Two component response 32.8 53 0.0018 16.8 5.5 38 30-70 58-96 (143)
466 4erh_A Outer membrane protein 32.7 52 0.0018 18.0 3.2 35 37-71 26-63 (148)
467 16pk_A PGK, 3-phosphoglycerate 32.4 57 0.002 21.8 3.7 30 43-72 30-59 (415)
468 3dao_A Putative phosphatse; st 32.2 54 0.0018 19.5 3.4 41 30-70 19-62 (283)
469 3cfy_A Putative LUXO repressor 32.1 56 0.0019 16.8 5.3 38 29-70 46-83 (137)
470 3ou2_A SAM-dependent methyltra 32.1 54 0.0019 18.3 3.3 39 32-70 108-146 (218)
471 1zh2_A KDP operon transcriptio 32.1 50 0.0017 16.2 4.3 18 29-46 43-60 (121)
472 3kfu_E Glutamyl-tRNA(Gln) amid 32.1 1.1E+02 0.0038 20.3 5.3 39 31-69 244-282 (471)
473 2k1s_A Inner membrane lipoprot 32.1 61 0.0021 17.8 3.4 35 37-71 38-73 (149)
474 3dcy_A Regulator protein; OMIM 32.0 17 0.00058 22.0 1.1 9 63-71 195-203 (275)
475 1j26_A Immature colon carcinom 32.0 57 0.002 17.6 3.1 40 31-70 41-82 (112)
476 3vfd_A Spastin; ATPase, microt 31.9 97 0.0033 19.5 5.7 17 24-40 200-216 (389)
477 2pl1_A Transcriptional regulat 31.9 51 0.0017 16.2 6.3 38 29-70 42-79 (121)
478 2f6q_A Peroxisomal 3,2-trans-e 31.7 90 0.0031 19.1 5.2 35 35-70 39-76 (280)
479 2ibg_E Protein hedgehog, GH039 31.5 12 0.00039 21.6 0.3 31 30-60 42-72 (150)
480 2r62_A Cell division protease 31.4 33 0.0011 20.2 2.3 17 24-40 96-112 (268)
481 4b4t_W RPN10, 26S proteasome r 31.4 74 0.0025 19.7 4.0 32 34-69 111-142 (268)
482 1mb3_A Cell division response 31.1 53 0.0018 16.2 5.2 38 30-70 44-82 (124)
483 2rfl_A Putative phosphohistidi 31.0 24 0.00082 19.8 1.6 18 54-72 99-116 (173)
484 2jba_A Phosphate regulon trans 31.0 54 0.0018 16.3 3.1 16 30-45 45-60 (127)
485 3cyp_B Chemotaxis protein MOTB 30.9 68 0.0023 17.4 5.3 37 35-71 5-44 (138)
486 2yxl_A PH0851 protein, 450AA l 30.8 30 0.001 22.6 2.2 14 32-45 331-344 (450)
487 4hbz_A Putative phosphohistidi 30.8 79 0.0027 18.1 4.7 23 50-72 99-121 (186)
488 3mm4_A Histidine kinase homolo 30.7 76 0.0026 17.9 6.5 37 31-70 119-158 (206)
489 2obb_A Hypothetical protein; s 30.6 46 0.0016 18.5 2.7 21 51-71 28-48 (142)
490 1ys7_A Transcriptional regulat 30.5 76 0.0026 17.9 6.4 38 29-70 49-86 (233)
491 3cg0_A Response regulator rece 30.5 58 0.002 16.5 6.7 36 30-70 53-89 (140)
492 3ayr_A Endoglucanase; TIM barr 30.4 1E+02 0.0036 19.4 4.9 33 39-71 92-124 (376)
493 4fak_A Ribosomal RNA large sub 30.3 82 0.0028 18.1 4.0 51 10-63 47-103 (163)
494 3t6k_A Response regulator rece 30.2 61 0.0021 16.6 6.3 39 29-70 46-85 (136)
495 3qr3_A Endoglucanase EG-II; TI 30.1 1.1E+02 0.0037 19.4 5.3 56 17-72 44-106 (340)
496 2r5f_A Transcriptional regulat 30.0 7.3 0.00025 23.9 -0.8 30 13-42 229-259 (264)
497 3tlf_A Enoyl-COA hydratase/iso 30.0 95 0.0032 18.8 5.0 36 34-69 23-61 (274)
498 3isa_A Putative enoyl-COA hydr 30.0 93 0.0032 18.7 4.9 36 34-69 19-56 (254)
499 1m2x_A Class B carbapenemase B 29.9 62 0.0021 18.4 3.3 36 33-71 37-72 (223)
500 2cun_A Phosphoglycerate kinase 29.8 54 0.0018 21.9 3.2 30 43-72 29-58 (410)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=3e-29 Score=154.09 Aligned_cols=72 Identities=33% Similarity=0.609 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus 128 ~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp TTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 477788899999999999999999999999999999999999999999999999999997779999999997
No 2
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=4e-29 Score=156.02 Aligned_cols=72 Identities=26% Similarity=0.581 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus 141 ~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 477788899999999999999999999999999999999999999999999999999987779999999997
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=3.5e-29 Score=157.98 Aligned_cols=72 Identities=28% Similarity=0.587 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+++++++++ ++|.|||++|||
T Consensus 131 ~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp TTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred cCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 578888999999999999999999999999999999999999999999999999999987 459999999997
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=6.8e-29 Score=155.83 Aligned_cols=72 Identities=31% Similarity=0.573 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.++++++++.++|.|||++|||
T Consensus 147 ~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 477788899999999999999999999999999999999999999999999999999987779999999997
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=5.1e-29 Score=156.08 Aligned_cols=72 Identities=29% Similarity=0.563 Sum_probs=68.4
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.+. .++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus 140 ~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 140 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp TTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred cCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 467777 899999999999999999999999999999999999999999999999999987779999999997
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=5.8e-29 Score=153.77 Aligned_cols=72 Identities=25% Similarity=0.577 Sum_probs=66.4
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+. .++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+++++++++ |.|||++|||
T Consensus 132 ~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp TTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred CCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 356554 48899999999999999999999999999999999999999999999999998765 9999999997
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.4e-28 Score=153.86 Aligned_cols=72 Identities=39% Similarity=0.572 Sum_probs=68.3
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+++++++++++|.|||++||+
T Consensus 134 ~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp HCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 367788899999999999999999999999999999999999999999999999999987779999999997
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=1e-28 Score=160.94 Aligned_cols=72 Identities=29% Similarity=0.571 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++|||||+.+|+++|+||||++||+..++.+++++++++++ |.|||++|||
T Consensus 151 vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp HTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 37788899999999999999999999999999999999999999999999999999999754 9999999997
No 9
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=7.8e-29 Score=153.80 Aligned_cols=72 Identities=32% Similarity=0.535 Sum_probs=68.0
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||+++|||++.+|+++||||||+|||+.+++.++++++++.++ |.|||++|||
T Consensus 114 ~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47778889999999999999999999999999999999999999999999999999998654 9999999997
No 10
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=2e-28 Score=152.86 Aligned_cols=72 Identities=29% Similarity=0.504 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++|||
T Consensus 116 ~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred cCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47778889999999999999999999999999999999999999999999999999998776 9999999997
No 11
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=2.4e-28 Score=153.19 Aligned_cols=72 Identities=29% Similarity=0.602 Sum_probs=68.2
Q ss_pred CCCc--chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT--EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~--~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|++ +..++++.+||||||||++||+|++.+|+++||||||+|||+.+++.+.+++++++++|.|||++|||
T Consensus 124 ~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 124 VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp TTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4677 78899999999999999999999999999999999999999999999999999987679999999997
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.8e-28 Score=151.90 Aligned_cols=70 Identities=31% Similarity=0.607 Sum_probs=66.6
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++++++++++|.|||++|||
T Consensus 129 l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp HHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5667889999999999999999999999999999999999999999999999999987679999999997
No 13
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=3.2e-28 Score=153.71 Aligned_cols=72 Identities=29% Similarity=0.571 Sum_probs=68.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE--EEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI--VLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~ti--l~~~h~ 72 (72)
+|+.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.++++++++.++|.|| |++|||
T Consensus 149 ~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 149 VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp TTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 477788899999999999999999999999999999999999999999999999999987668999 999997
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=3.8e-28 Score=152.53 Aligned_cols=72 Identities=25% Similarity=0.401 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||++||||+++ +|+++||||||+|||+..+..+.+++++++++ |.|||++|||
T Consensus 129 ~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 467788899999999999999999999999 99999999999999999999999999998765 6799999997
No 15
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.95 E-value=2.5e-28 Score=151.95 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=62.6
Q ss_pred CC-cchhcCcCCC-CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GL-TEYRHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l-~~~~~~~~~~-lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+ .+..++++.+ ||||||||++||+|++.+|+++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus 130 gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 130 DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp TCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred CCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 56 4678899999 99999999999999999999999999999999999999999999986669999999996
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=5.9e-28 Score=156.86 Aligned_cols=72 Identities=29% Similarity=0.526 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 133 ~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 133 MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred cCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 57888899999999999999999999999999999999999999999999999999998765 9999999997
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=4.7e-28 Score=157.55 Aligned_cols=72 Identities=33% Similarity=0.501 Sum_probs=67.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++|||||+.+|+++||||||++||+..+..+++.+.++. +.|.|+|++|||
T Consensus 126 ~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp HTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 377889999999999999999999999999999999999999999999999998887765 459999999997
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.95 E-value=6e-28 Score=158.01 Aligned_cols=72 Identities=25% Similarity=0.557 Sum_probs=68.7
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.+..++++.+||||||||++|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 121 ~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp TTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred cCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 47888999999999999999999999999999999999999999999999999999999765 9999999997
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=6.9e-28 Score=156.16 Aligned_cols=72 Identities=26% Similarity=0.506 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.+ .|.|+|++|||
T Consensus 115 ~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp TTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4788889999999999999999999999999999999999999999999999999999865 49999999997
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=9e-28 Score=156.16 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.++++.++ |.|+|++|||
T Consensus 121 ~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 121 LLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 47888899999999999999999999999999999999999999999999999999998654 9999999997
No 21
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=7.9e-28 Score=149.99 Aligned_cols=72 Identities=29% Similarity=0.511 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~-------~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+ ++||||||+|||+.+++.+.++++++.++|.|||++|||
T Consensus 114 ~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 477888899999999999999999999999999 999999999999999999999999987679999999997
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=3.7e-28 Score=148.80 Aligned_cols=71 Identities=21% Similarity=0.422 Sum_probs=66.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++. ++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+
T Consensus 122 ~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 122 VEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp TTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred cCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 467777 89999999999999999999999999999999999999999999999999987668999999996
No 23
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=6.8e-28 Score=156.36 Aligned_cols=72 Identities=28% Similarity=0.496 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 128 ~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp TTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47888899999999999999999999999999999999999999999999999999998654 9999999997
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=1.3e-27 Score=150.06 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=65.6
Q ss_pred CCCc-chhcCcCC-CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~-~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+. ...++++. +||||||||++|||||+.+|+++||||||+|||+.+++.+++++++++++|.|||++|||
T Consensus 150 ~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 150 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp TTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred cCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 4664 46788887 599999999999999999999999999999999999999999999886669999999996
No 25
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=1.2e-27 Score=156.13 Aligned_cols=72 Identities=31% Similarity=0.595 Sum_probs=68.2
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 127 ~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp HTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 36788899999999999999999999999999999999999999999999999999998765 9999999997
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=8.8e-28 Score=156.34 Aligned_cols=72 Identities=31% Similarity=0.537 Sum_probs=68.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 121 ~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 121 LHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp TTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred cCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 47888899999999999999999999999999999999999999999999999999998655 9999999997
No 27
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=1.3e-27 Score=155.96 Aligned_cols=72 Identities=24% Similarity=0.486 Sum_probs=68.5
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++++..++++.+||||||||++|||||+.+|+++||||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 129 ~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 129 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47888899999999999999999999999999999999999999999999999999998765 9999999997
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=3.6e-27 Score=146.65 Aligned_cols=69 Identities=26% Similarity=0.521 Sum_probs=63.3
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++.++++. +|.|||++||+
T Consensus 135 l~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~ 203 (247)
T 2ff7_A 135 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 203 (247)
T ss_dssp GGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSS
T ss_pred hhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 4445566789999999999999999999999999999999999999999999999984 59999999996
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=2.6e-27 Score=148.97 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=65.7
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
|++...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++.+ .|.|||++|||
T Consensus 145 gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp GGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred chhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 455667889999999999999999999999999999999999999999999999999864 48999999997
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.7e-26 Score=144.95 Aligned_cols=69 Identities=30% Similarity=0.418 Sum_probs=64.4
Q ss_pred CCCc-chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~-~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|++ +..++++.+||||||||+++|+|++.+|+++||||||+|||+.+++.+.+.++++.+ |||++|||
T Consensus 115 ~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd 184 (263)
T 2pjz_A 115 LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHE 184 (263)
T ss_dssp TTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESC
T ss_pred cCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcC
Confidence 4677 788999999999999999999999999999999999999999999999999988743 99999997
No 31
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=2.6e-26 Score=154.96 Aligned_cols=72 Identities=26% Similarity=0.461 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+||+.+|+++||||||++||+.+++.+.++|++++++|.|||++|||
T Consensus 146 lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp TTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467778899999999999999999999999999999999999999999999999999997779999999997
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=3.9e-27 Score=145.98 Aligned_cols=67 Identities=25% Similarity=0.470 Sum_probs=61.9
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+||||||||++||||++++|+++||||||+|||+.+++.+++.++++. +|.|||++||+
T Consensus 131 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR 197 (243)
T ss_dssp CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 33456678999999999999999999999999999999999999999999999986 69999999996
No 33
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=2.9e-26 Score=156.59 Aligned_cols=72 Identities=26% Similarity=0.480 Sum_probs=68.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+||+.+|+++||||||++||+..+..+.++|+++.++|.|||++|||
T Consensus 216 lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 216 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp TTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 477888999999999999999999999999999999999999999999999999999997779999999997
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=2.5e-26 Score=143.74 Aligned_cols=65 Identities=25% Similarity=0.517 Sum_probs=60.8
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++++.+||||||||++||||++.+|+++||||||+|||+.+++.+++.++++.+ |.|||++||+
T Consensus 149 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~ 213 (260)
T 2ghi_A 149 VGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHR 213 (260)
T ss_dssp ESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred ccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 3467889999999999999999999999999999999999999999999999864 8999999996
No 35
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=3e-26 Score=154.84 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=67.8
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..++++|+++.+ .|.|||++|||
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4677788999999999999999999999999999999999999999999999999999875 58999999997
No 36
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.8e-26 Score=155.19 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=67.1
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.++|+++.+ .|.|||++|||
T Consensus 456 ~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd 527 (608)
T 3j16_B 456 RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527 (608)
T ss_dssp TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 667788999999999999999999999999999999999999999999999999999864 59999999997
No 37
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=1.4e-25 Score=143.42 Aligned_cols=69 Identities=23% Similarity=0.442 Sum_probs=62.6
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++....+++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+
T Consensus 180 l~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~ 248 (306)
T 3nh6_A 180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR 248 (306)
T ss_dssp GGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred hhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence 34455667789999999999999999999999999999999999999999999998754 7899999996
No 38
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.93 E-value=1.5e-25 Score=130.94 Aligned_cols=67 Identities=31% Similarity=0.455 Sum_probs=61.9
Q ss_pred hhcCcCCCCChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTA------MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia------~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||||||||+++| ++++.+|+++||||||+|||+..++.+.+.+.++.++|.||+++||+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 122 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence 35678999999999999876 89999999999999999999999999999999987678999999996
No 39
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-25 Score=153.11 Aligned_cols=72 Identities=18% Similarity=0.361 Sum_probs=68.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+++..++++.+||||||||++||+|++.+|+++||||||++||+.++..+.+++++++++|.|||++|||
T Consensus 209 ~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp HTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred cCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367788999999999999999999999999999999999999999999999999999998779999999997
No 40
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=1.9e-25 Score=150.82 Aligned_cols=72 Identities=22% Similarity=0.450 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++.+..++++.+||||||||++||++++.+|+++||||||+|||+.+++.+.++++++.+ .|.|||++|||
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4677788999999999999999999999999999999999999999999999999999864 59999999997
No 41
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=2.1e-25 Score=150.74 Aligned_cols=71 Identities=20% Similarity=0.422 Sum_probs=67.4
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+....++++.+||||||||++||+|++.+|+++||||||++||+.++..+.++++++.+ |.|||++|||
T Consensus 126 l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd 196 (538)
T 3ozx_A 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 4677888999999999999999999999999999999999999999999999999999865 9999999997
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=8.7e-26 Score=139.66 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=59.6
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLS---QIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~---~~~~~g~til~~~h~ 72 (72)
.++++.+||||||||+++|||++.+|+++||||||+|||+.+++.+++.+. ++. +|.|||++||+
T Consensus 121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~ 188 (237)
T 2cbz_A 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHS 188 (237)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecC
Confidence 467889999999999999999999999999999999999999999999985 333 48999999996
No 43
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=1.6e-25 Score=153.50 Aligned_cols=66 Identities=27% Similarity=0.498 Sum_probs=63.7
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++++.+||||||||++|||||+++|+ ++||||||+|||+..++.+.+++++++++|.|||+||||
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 688999999999999999999999998 999999999999999999999999998789999999997
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=3.2e-25 Score=151.46 Aligned_cols=72 Identities=21% Similarity=0.428 Sum_probs=67.6
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+|+.+..++++.+||||||||++||++|+++|+++||||||+|||+.++..+.++|+++.+ .|.|||++|||
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3677788999999999999999999999999999999999999999999999999999864 58999999997
No 45
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=3.3e-25 Score=136.43 Aligned_cols=64 Identities=20% Similarity=0.376 Sum_probs=57.4
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l-~~~~~~g~til~~~h~ 72 (72)
++++.+||||||||+++|||++++|+++||||||+|||+.+++.+++.+ .++. +|.|||++||+
T Consensus 125 ~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~ 189 (229)
T 2pze_A 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSK 189 (229)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCC
Confidence 3456899999999999999999999999999999999999999999864 4543 48999999996
No 46
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.9e-25 Score=145.59 Aligned_cols=71 Identities=24% Similarity=0.457 Sum_probs=64.7
Q ss_pred CCCcchhcCcCCC-----------CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 1 MGLTEYRHRESGR-----------YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 1 ~~l~~~~~~~~~~-----------lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+++.+..++++.+ ||||||||++|||||+.+|+++||||||++||+..+..+.+.|+++. .+.|+|++
T Consensus 132 ~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~v 210 (390)
T 3gd7_A 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILC 210 (390)
T ss_dssp TTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEE
T ss_pred hCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 3566778888887 99999999999999999999999999999999999999999998754 48999999
Q ss_pred ecC
Q psy858 70 SHR 72 (72)
Q Consensus 70 ~h~ 72 (72)
||+
T Consensus 211 tHd 213 (390)
T 3gd7_A 211 EAR 213 (390)
T ss_dssp CSS
T ss_pred EcC
Confidence 996
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=2e-24 Score=146.38 Aligned_cols=69 Identities=32% Similarity=0.519 Sum_probs=62.7
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++....++..+||||||||+++|||++++|+++||||||++||+.+++.+.+.++++.+ |+|+|++||+
T Consensus 470 ~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 538 (582)
T 3b60_A 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHR 538 (582)
T ss_dssp GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 34445566789999999999999999999999999999999999999999999999864 8999999996
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.7e-24 Score=147.49 Aligned_cols=67 Identities=27% Similarity=0.434 Sum_probs=63.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+||||||||++|||||+.+| +++||||||+|||+..+..+.+++++++++|.|||+||||
T Consensus 536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999999999999887 5999999999999999999999999998789999999997
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=2.4e-24 Score=146.03 Aligned_cols=69 Identities=32% Similarity=0.551 Sum_probs=62.3
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...+++..+||||||||+++|||++++|++++|||||++||+.+++.+.+.++++.+ |+|+|++||+
T Consensus 470 ~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 538 (582)
T 3b5x_A 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR 538 (582)
T ss_pred ccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence 33444556789999999999999999999999999999999999999999999998754 8999999996
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=3.8e-24 Score=145.36 Aligned_cols=70 Identities=33% Similarity=0.567 Sum_probs=63.7
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|++...++++.+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+
T Consensus 468 g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 537 (587)
T 3qf4_A 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQK 537 (587)
T ss_dssp GGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESC
T ss_pred chhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence 34455677889999999999999999999999999999999999999999999998874 58999999996
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.91 E-value=4.4e-24 Score=144.99 Aligned_cols=64 Identities=28% Similarity=0.523 Sum_probs=59.8
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+++.+||||||||+++|||++++|+++||||||++||+.+++.+.+.++++.+ |+|+|++||+
T Consensus 478 ~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 541 (595)
T 2yl4_A 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541 (595)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCC
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 344589999999999999999999999999999999999999999999999865 8999999996
No 52
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=2.5e-24 Score=136.61 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=55.2
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l-~~~~~~g~til~~~h~ 72 (72)
+++.+||||||||++||||++.+|+++||||||+|||+.++..+++.+ .++. +|.|||++||+
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd 218 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSK 218 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecC
Confidence 446899999999999999999999999999999999999999999864 4443 48999999996
No 53
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=5.8e-24 Score=137.97 Aligned_cols=65 Identities=26% Similarity=0.481 Sum_probs=61.8
Q ss_pred cCcCCCCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALI------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++.+|||||+||++||+|++ .+|+++||||||+|||+..++.+.+++.++.+.|.|||++||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 5688899999999999999999 7999999999999999999999999999988779999999997
No 54
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=7.4e-24 Score=143.60 Aligned_cols=67 Identities=28% Similarity=0.479 Sum_probs=60.6
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....++..+||||||||+++|||++++|++++|||||++||+.+.+.+.+.++++. +++|+|++||+
T Consensus 469 t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 535 (578)
T 4a82_A 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHR 535 (578)
T ss_dssp CBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSS
T ss_pred hhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 34445667999999999999999999999999999999999999999999998875 47999999996
No 55
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=8.4e-24 Score=143.83 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=58.4
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...+||||||||+++|||++++|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 549 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHR 549 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCC
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 347899999999999999999999999999999999999999999999875 58999999996
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=9.3e-23 Score=144.11 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=62.7
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..++++.+|||||+||++||++|+.+| +++||||||+|||+...+.+.+.|.++.++|.|||+||||
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 357889999999999999999999875 7999999999999999999999999998889999999997
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=5.2e-23 Score=146.08 Aligned_cols=69 Identities=30% Similarity=0.424 Sum_probs=64.2
Q ss_pred CCC-cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l-~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+ +...++++.+||||||||++||++++.+|+++||||||++||+.+++.+.++|++ .|.|||++|||
T Consensus 535 lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHd 604 (986)
T 2iw3_A 535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHD 604 (986)
T ss_dssp TTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSC
T ss_pred cCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECC
Confidence 466 3578899999999999999999999999999999999999999999999999987 58999999997
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=8.5e-23 Score=144.67 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=66.2
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.. ..++++.+|||||+||++||++|+.+| +++||||||+|||+..++.++++|.++.++|.|||++|||
T Consensus 832 ~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 907 (972)
T 2r6f_A 832 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907 (972)
T ss_dssp TTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 35655 678899999999999999999999865 9999999999999999999999999998789999999997
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=4.4e-23 Score=145.73 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=65.6
Q ss_pred CCcc-hhcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.. ..++++.+|||||+||++||++|+++|+ ++||||||+|||+...+.+.++++++++.|.|||+||||
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5543 3688999999999999999999999887 999999999999999999999999998779999999997
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=1.1e-22 Score=142.77 Aligned_cols=71 Identities=27% Similarity=0.464 Sum_probs=65.4
Q ss_pred CCcc-hhcCcCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~---p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+.. ..++++.+|||||+||++||++|+.+ |+++||||||+|||+..++.+++++.++.++|.|||++|||
T Consensus 718 gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd 792 (842)
T 2vf7_A 718 GLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792 (842)
T ss_dssp TCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4544 35889999999999999999999996 69999999999999999999999999998889999999997
No 61
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=1.6e-22 Score=143.53 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=65.8
Q ss_pred CCCcc-hhcCcCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~~~~~~~~lS~G~~qr~~ia~~l~~~p---~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.. ..++++.+|||||+||+++|++|+.+| +++||||||+|||+..++.++++|.++.++|.|||++|||
T Consensus 850 lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 925 (993)
T 2ygr_A 850 VGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHN 925 (993)
T ss_dssp TTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 35554 578899999999999999999999865 9999999999999999999999999998789999999997
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=3.6e-22 Score=141.77 Aligned_cols=71 Identities=25% Similarity=0.470 Sum_probs=65.8
Q ss_pred CCcch-hcCcCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEY-RHRESGRYSGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+... .++.+.+|||||+||++||++|.++ |+++||||||+|||+...+.+.+.++++++.|.|||+|+||
T Consensus 509 GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 509 GLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 55543 6889999999999999999999999 58999999999999999999999999998889999999997
No 63
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=2.5e-22 Score=128.91 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=61.8
Q ss_pred chhcCcCCCCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 5 EYRHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~q------r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++.+||||||| |+++|++++.+|+++||||||+|||+..+..+.+++.++.++|.+||++||+
T Consensus 240 ~~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp TTEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred ccCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 3457789999999999 6778888899999999999999999999999999999987778899999996
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=2.9e-22 Score=141.95 Aligned_cols=71 Identities=28% Similarity=0.491 Sum_probs=65.9
Q ss_pred CCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+... .++.+.+|||||+||++||++|.++| +++||||||+|||+...+.+++.++++++.|.|||+|+||
T Consensus 492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56543 68999999999999999999999985 8999999999999999999999999998789999999997
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.86 E-value=2.7e-22 Score=142.42 Aligned_cols=69 Identities=32% Similarity=0.430 Sum_probs=61.3
Q ss_pred CCCcc-h-hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTE-Y-RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~-~-~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+.. . .++++.+||||||||++||++++.+|+++||||||+|||+.+...+.+.++++ +.|||++|||
T Consensus 887 lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD 957 (986)
T 2iw3_A 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS 957 (986)
T ss_dssp TTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSC
T ss_pred cCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECC
Confidence 35653 3 58899999999999999999999999999999999999999999998887653 6799999997
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=5.5e-22 Score=139.32 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=66.7
Q ss_pred CCCcch-hcCcCCCCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 1 MGLTEY-RHRESGRYSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 1 ~~l~~~-~~~~~~~lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|+... .++++.+|||||+||++||++|.++| +++||||||++||+...+.+.++++.+++.|.|||+|+|+
T Consensus 366 vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp TTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred CCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 466544 78999999999999999999999999 5999999999999999999999999998789999999997
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=7.6e-22 Score=142.62 Aligned_cols=63 Identities=30% Similarity=0.563 Sum_probs=58.4
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++. .+|+|+|++||+
T Consensus 1167 e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~ 1229 (1284)
T 3g5u_A 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHR 1229 (1284)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSC
T ss_pred CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecC
Confidence 445789999999999999999999999999999999999999999999875 458999999997
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=1.8e-21 Score=140.65 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=60.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...+...+||||||||++||||++++|+++||||||++||+.+.+.+.+.++.+. +|+|+|++||+
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 584 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHR 584 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 3445677999999999999999999999999999999999999999999998764 58999999996
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.85 E-value=2.7e-21 Score=125.67 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=57.5
Q ss_pred cCCC-CChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGR-YSGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~-lS~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.. +||||+||+++|++++.+| +++||||||+|||+..++.+.+.|+++. +|.+||+|||+
T Consensus 291 ~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~ 355 (415)
T 4aby_A 291 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL 355 (415)
T ss_dssp BGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred chhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 3444 5999999999999999999 9999999999999999999999999987 58999999996
No 70
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.85 E-value=6.8e-21 Score=113.54 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=58.0
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...+.+..||||||||+++|++++ .+|+++||||||+|||+...+.+.++++++.+ +.++|++||+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~ 126 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLR 126 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSC
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEec
Confidence 345678899999999999999997 45799999999999999999999999998764 5688999985
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=5.9e-21 Score=121.74 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=60.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.++.+||+|||||++||++++ .+|+++||||||++||+..++.+.++++++. +|.++|++||+
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~ 281 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHN 281 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCC
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECC
Confidence 356678899999999999999997 6889999999999999999999999999874 58899999996
No 72
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.84 E-value=2.8e-21 Score=139.99 Aligned_cols=65 Identities=29% Similarity=0.527 Sum_probs=58.7
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
......+||||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. .|+|+|+|+|+
T Consensus 1211 vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1211 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHR 1275 (1321)
T ss_dssp ETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSS
T ss_pred ecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccC
Confidence 334557899999999999999999999999999999999999999999998754 48999999995
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.84 E-value=4.2e-21 Score=128.67 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=60.6
Q ss_pred cCcCCCC-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRY-SGGNKRKLSTAMALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~l-S~G~~qr~~ia~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+++.+| ||||+||+++|++++.+| +++||||||+|||+.++..+.++|+++.+ |.+||+|||+
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 4577888 999999999999999999 99999999999999999999999999877 8999999996
No 74
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=8.3e-21 Score=137.53 Aligned_cols=64 Identities=30% Similarity=0.533 Sum_probs=58.9
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.....+||||||||++||||++++|+++||||||++||+.+...+.+.+.++. +|+|+|+++|+
T Consensus 549 Ge~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHr 612 (1321)
T 4f4c_A 549 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHR 612 (1321)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEccc
Confidence 34567899999999999999999999999999999999999999999998875 48999999995
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=5.6e-21 Score=112.66 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPI----------------SRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~----------------~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....|+|++||+++|++++.+|++++|||||++||+. .+..+.+.++++.++|.|+|++|||
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 3456999999999999999999999999999999999 6688899988887679999999997
No 76
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.78 E-value=8.7e-19 Score=115.12 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=58.9
Q ss_pred cCcCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMALI----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+++..|||||||++++|++++ .+|+++|||||+++||+..+..+.+.+.++.+++.++|++||+
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 3456779999999999999999 5899999999999999999999999999876558899999996
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.77 E-value=1.9e-19 Score=107.24 Aligned_cols=63 Identities=8% Similarity=-0.027 Sum_probs=56.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 6 YRHRESGRYSGGNKRKLSTAMA-----LIGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~-----l~~~p~~lllDE--P~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..++++.+|||||+||+++|++ ++.+|+++++|| ||+++|+..++.+.+.+.+ .+.|+|+++|
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H 138 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIP 138 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECC
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEc
Confidence 4567788999999999999996 999999999999 9999999999999888754 4677999986
No 78
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.75 E-value=3.6e-18 Score=110.67 Aligned_cols=63 Identities=27% Similarity=0.449 Sum_probs=55.9
Q ss_pred CcCCCCChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 9 RESGRYSGGNKRKL------STAMALIGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~------~ia~~l~~~-p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++..+||||+||+ ++|+++..+ |+++||||||+|||+..+..+.+.+.++. .+.+||++||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~ 345 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHH 345 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEECh
Confidence 46778999999988 567888999 99999999999999999999999998864 35689999996
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=2.9e-18 Score=111.47 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=56.2
Q ss_pred cCcCC-CCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 8 HRESG-RYSGGNKRKLSTAMALI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~-~lS~G~~qr~~ia~~l~---------~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++. .+|+||+|++++|++|+ .+|+++||||||++||+..++.+.+.+.++. .|+|++||.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~ 330 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL 330 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec
Confidence 45666 79999999999999999 8999999999999999999999999998753 699999983
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.3e-18 Score=114.74 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMA--LIGDPPL----VFLDE-PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~--l~~~p~~----lllDE-P~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+++..+ +.+||||||||+++|++ ++.+|++ +|||| ||++||+. .+.+.+++++ .+.|+++++|+
T Consensus 226 gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~ 297 (460)
T 2npi_A 226 GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCS 297 (460)
T ss_dssp CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECC
T ss_pred CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEcc
Confidence 4555444 77999999999999999 9999999 99999 99999999 5556655544 37899999996
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=1.9e-18 Score=105.24 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 17 G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|||||+++|||++.+|+++||||||+| ++..+.++++++ ++|.||| +|||
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd 157 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGD 157 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECC
Confidence 999999999999999999999999999 888899999887 5689999 9997
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.63 E-value=3e-16 Score=105.36 Aligned_cols=69 Identities=10% Similarity=-0.021 Sum_probs=63.4
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPI-----SRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~-----~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+....+.++.+||+||+||+.+++++..+|+++++| ||++||.. .++.+.++++.+++.|.|+|+++|+
T Consensus 343 ~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 343 LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 345567788899999999999999999999999999 99999999 9999999999988789999999996
No 83
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.55 E-value=1.1e-14 Score=103.25 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=54.6
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCceEEEEecC
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~-~~l~~~~~-~g~til~~~h~ 72 (72)
|+.+...+....+|+||+++..++++ +.+|+++|||||++|+|+.....+. .++..+.+ .|.++|++||+
T Consensus 724 g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 724 GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp ----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 34455566778899999999999998 8999999999999999999999887 77777755 59999999996
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.46 E-value=3.4e-13 Score=95.93 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=51.5
Q ss_pred cCcCCCCChHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEEecC
Q psy858 8 HRESGRYSGGNKRKLSTAMAL--IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l--~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~-~g~til~~~h~ 72 (72)
+.....+|+++.++..+++++ +.+|+++|||||++|+|+.....+ +.++..+.+ .|.++|++||+
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 345567888888888888888 999999999999999999998887 777777766 49999999996
No 85
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.43 E-value=2.1e-15 Score=99.59 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=52.6
Q ss_pred CChH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----ceEEEEecC
Q psy858 14 YSGG--NKRKLSTAMALIG----------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-----KTG----QSIVLTSHR 72 (72)
Q Consensus 14 lS~G--~~qr~~ia~~l~~----------~p~~lllDEP~~gld~~~~~~i~~~l~~~~-----~~g----~til~~~h~ 72 (72)
+|+| |+||+.+|+++.. +|+++++||||+|||+..++.+++.++++. +.| .+|++++|+
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 9999 9999999999999 999999999999999999999999999874 222 568888874
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.41 E-value=4.5e-13 Score=95.91 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=53.1
Q ss_pred CcchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CceEEEEecC
Q psy858 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR-HRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 3 l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~-~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
..+...+...++|+++++ ++++++++.+|+++|||||++|+|+... ..++.++..+.++ |.++|++||+
T Consensus 841 ~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 841 ASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred CHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 333444455677877765 9999999999999999999999999985 5578899888776 9999999996
No 87
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.39 E-value=5e-13 Score=83.31 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=53.8
Q ss_pred cchhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCceEEEEecC
Q psy858 4 TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS--GVDPISR---HRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 4 ~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~--gld~~~~---~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
.+..++++..+|+|+.+++ ++++.+|+++++|||++ ++|+... ..+...|..+.+ .|+|||+++|+
T Consensus 109 ~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 109 QPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp CCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred eecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3445678889999997765 57888999999999999 9987443 778888888754 59999999995
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.25 E-value=2.8e-11 Score=75.72 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCCCChHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 11 SGRYSGGN-KRKLSTAMALIGDPPLVFLDEPTS---G---VDP-ISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~-~qr~~ia~~l~~~p~~lllDEP~~---g---ld~-~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+.++|.++ +|++. ++++..+|+++|+|||++ + +|. .....+.+.|++++++ |++||+++|+
T Consensus 127 ~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~ 196 (296)
T 1cr0_A 127 FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (296)
T ss_dssp CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 35688888 66666 999999999999999999 5 455 6667788888888665 9999999995
No 89
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.22 E-value=1.4e-11 Score=86.32 Aligned_cols=60 Identities=23% Similarity=0.222 Sum_probs=49.6
Q ss_pred cCCCCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMAL--IGDPPLVFLDEP---TSGVDPISR-HRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l--~~~p~~lllDEP---~~gld~~~~-~~i~~~l~~~~~~g~til~~~h~ 72 (72)
....+|+|+++++.+++++ +.+|+++||||| |+++|..+. ..+.+.+.+ .|.++|++||+
T Consensus 632 l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~ 697 (765)
T 1ewq_A 632 LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHY 697 (765)
T ss_dssp ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCC
T ss_pred HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCC
Confidence 3456899999999999999 999999999999 888998875 456666654 58999999996
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.18 E-value=1.8e-12 Score=82.43 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
|+.+..++++.+|| +||++++++++.+|+ ++++| ||+|+|+..+. +.+.+ .|.|++++||
T Consensus 193 gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 193 GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK 255 (302)
T ss_dssp CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEEC
T ss_pred CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeC
Confidence 45555666777888 999999999999999 99999 99999998652 34443 5899999999
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.18 E-value=2.2e-11 Score=78.20 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 16 GGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 16 ~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
||++||+++++|+..+|+++++|||++. .+.+.++.+...+.|+++++|+
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEEC
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcc
Confidence 8999999999999999999999999982 3566676665434579999995
No 92
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.18 E-value=4e-11 Score=84.34 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=47.8
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEEecC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i-~~~l~~~~~-~g~til~~~h~ 72 (72)
....+|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.+ .|.++|++||+
T Consensus 666 ~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~ 729 (800)
T 1wb9_A 666 GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 729 (800)
T ss_dssp ----CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCC
Confidence 34567777664 4555566899999999999999999888775 788888877 49999999996
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.13 E-value=7.3e-12 Score=81.49 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=49.3
Q ss_pred CCcchhcCcCCCCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 2 ~l~~~~~~~~~~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
|+.+..++++.+|| +||++++++++.+|+ ++++| ||+|+|+..+. +.+.+ .|.|++++||
T Consensus 250 Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiTh 312 (359)
T 2og2_A 250 GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTK 312 (359)
T ss_dssp CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEES
T ss_pred CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEec
Confidence 45555666777888 999999999999999 99999 99999998653 33443 4899999999
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.11 E-value=1.7e-10 Score=68.98 Aligned_cols=60 Identities=10% Similarity=-0.010 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGV--DPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~--~lllDEP~~gl--d~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
..|.++.++...+.....+|+ ++++|||++++ |+.....+.+.++++.+ .|.||++++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 348888888777777778999 99999999877 99888999999998864 59999999995
No 95
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.10 E-value=1.3e-12 Score=81.98 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=46.4
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+..+.+|||||+||+++||+++. ++++|||+.|||+.. .++++.+.+. .++|++.|
T Consensus 91 ~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~ 148 (270)
T 3sop_A 91 YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIA 148 (270)
T ss_dssp HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEET
T ss_pred HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEe
Confidence 3455677899999999999999886 999999999999988 3445555544 78887765
No 96
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.09 E-value=5.7e-13 Score=80.02 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 27 ALIGDPPLVFLDEPTSGV----DPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gl----d~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++.+|++++||||++++ |+..++.+++.++++.+ .|.|++++|||
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd 187 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR 187 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC
Confidence 788999999999999998 78899999999999875 48999999997
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.05 E-value=1.3e-10 Score=70.32 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVD-----PISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 17 G~~qr~~ia~~l~~~p~~lllDEP~~gld-----~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++.........-..+|+++++|||++++| +..++.+.++++.+++.|.|||++||+
T Consensus 121 ~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33333333344458999999999999997 677777999998887779999999996
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.93 E-value=9.2e-11 Score=78.79 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 20 RKLSTAMALI-GDPPLVFLDEPTS-----GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 20 qr~~ia~~l~-~~p~~lllDEP~~-----gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..-.+...+. .+|+++++||||+ ++|+..++.++++++.+++.|.|||+++|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~ 184 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTER 184 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3444555554 6799999999997 469999999999999997779999999996
No 99
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.92 E-value=3.5e-09 Score=63.01 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCCChHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CceEEEEecC
Q psy858 12 GRYSGGN--KRKLSTAMALIGD-PPLVFLDEPTSGVDPIS--------RHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~--~qr~~ia~~l~~~-p~~lllDEP~~gld~~~--------~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
...++++ +++++.+++++.+ |+++++|||++.+|+.. ...+...++++.++ |.++++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 3455554 5688888899886 99999999999998733 24455556776554 8999999994
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.91 E-value=1.3e-09 Score=70.30 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCceEEEEecC
Q psy858 15 SGGNKRKLSTAMALI-------GDPPLVFLDEPTSGVDPIS------------RHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 15 S~G~~qr~~ia~~l~-------~~p~~lllDEP~~gld~~~------------~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
|.++.+++.++++++ .+|+++|+||||+++|+.. ...+...|..+.+ .|.|||+++|.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 577889999999998 6899999999999999852 3455556666654 48999999994
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.84 E-value=1.1e-08 Score=63.74 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++++++..+|+++++|||+ |+.+...+ ++. .+.|.+|++++|+
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~ 132 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHT 132 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECC
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCc
Confidence 899999999999999999999 88876543 333 3469999999996
No 102
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.79 E-value=1.1e-11 Score=75.27 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-------CCceEEEEecC
Q psy858 12 GRYSGGNKRKLST-----AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-------TGQSIVLTSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~i-----a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-------~g~til~~~h~ 72 (72)
.++||||+||+++ +++++.+|++++||||++++|......+.+.+....+ .+...++++|+
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~ 193 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD 193 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSS
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCC
Confidence 4679999999999 8899999999999999999999888888887776532 35677787774
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.78 E-value=3.1e-08 Score=57.82 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=39.8
Q ss_pred HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 28 LIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 28 l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+.+|+++++|||++ ++|++.++.+.+++....++|.++|++||.
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 356899999999985 999999999999998877679999999984
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.76 E-value=6.3e-09 Score=62.18 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=41.7
Q ss_pred CChHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCceEEEEecC
Q psy858 14 YSGGNK-RKLSTAMALIG-------DPPLVFLDEPTSGVDPI-------S-----RHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~-qr~~ia~~l~~-------~p~~lllDEP~~gld~~-------~-----~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
.+.+++ +.+..+..++. +|+++++|||++++|+. . ...+...+.++.+ .|.|||+++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344443 33555555555 89999999999999883 2 2356667777654 49999999994
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.73 E-value=3.9e-09 Score=62.41 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=47.9
Q ss_pred CcCCCCChHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q psy858 9 RESGRYSGGNKRK-LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS 65 (72)
Q Consensus 9 ~~~~~lS~G~~qr-~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~t 65 (72)
.++..+|+|++|+ +..+++++.+|..+++||||+++|......+++.+.++..+|.+
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 4566789999998 89999999999989999999999999999999999887655544
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.73 E-value=6.9e-11 Score=74.91 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=44.5
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+++.++|||+|||+.++++++ ++++||||+ |||+... ++++.+.+. +.++++++||
T Consensus 109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence 667889999999988888775 999999998 5999874 455555443 7888888886
No 107
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.70 E-value=6.5e-11 Score=75.59 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=35.8
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~ 46 (72)
+.++..||+||+||+++|++++.+|+++|+|||+..+|+
T Consensus 171 ~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 171 YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 456779999999999999999999999999999999864
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.67 E-value=5.6e-08 Score=63.07 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 23 STAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 23 ~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++|..+|+++++|||+ |... .+.+.+..+.|++|++++|+
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~ 230 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHT 230 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEcc
Confidence 9999999999999999999 5544 33444445679999999995
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.65 E-value=1.5e-09 Score=65.00 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=38.2
Q ss_pred cCcCCCCChHHHHHHHH-HH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy858 8 HRESGRYSGGNKRKLST-AM---ALIGDPPLVFLDE--PTSGVDPISRHRLWAVLS 57 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~i-a~---~l~~~p~~lllDE--P~~gld~~~~~~i~~~l~ 57 (72)
.++...+|+||++++.. .+ |+..+|+++|+|| |+..+|+...+.+.+++.
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 34555789999988743 43 5789999999999 898999987666666554
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.49 E-value=2.2e-07 Score=53.48 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce-EEEEec
Q psy858 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS-IVLTSH 71 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~t-il~~~h 71 (72)
++..+|+++++|||+. ++...++.+++++....++|.+ +|++||
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 4567899999999998 6665688899999887777888 888887
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.41 E-value=7.4e-12 Score=74.78 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=54.3
Q ss_pred hhcCcCCCCChHHH----HHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH-HhCCceEEEEec
Q psy858 6 YRHRESGRYSGGNK----RKLSTAMALIGDPPLVFLDEPTSG-------VDPISRHRLWAVLSQI-QKTGQSIVLTSH 71 (72)
Q Consensus 6 ~~~~~~~~lS~G~~----qr~~ia~~l~~~p~~lllDEP~~g-------ld~~~~~~i~~~l~~~-~~~g~til~~~h 71 (72)
..+.++.++|+|++ ||++++++++.+|.++++|||+++ ||+.....+...+.+. .+.|.|++.++|
T Consensus 82 ~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34456778999974 678889999999999999999999 9999999888888775 345888887776
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.39 E-value=2.4e-08 Score=63.54 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
++...+||++++|+++.+|+.++| .||+.+.+.+.+.++.+.+. |.|++++||+
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 344558999999999999994333 34444444555666666544 8999999995
No 113
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.37 E-value=5.2e-08 Score=63.00 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=46.1
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----eEEEEecC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK--TGQ-----SIVLTSHR 72 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~--~g~-----til~~~h~ 72 (72)
..+..||+|| |++++| +.+|++ |+|+|+.....+.+++.++.+ .|. ||+++|||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thd 227 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDN 227 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSC
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCC
Confidence 3567889999 899999 577775 899999999999999998864 477 89999996
No 114
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=6.7e-07 Score=56.59 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=35.7
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 28 l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..+|+++|+|||++ ||+.++..+.+.+.+.. .+.++|++||+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~ 173 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDS 173 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCC
Confidence 356899999999999 99999999999998753 47899999985
No 115
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.33 E-value=7.1e-09 Score=63.47 Aligned_cols=56 Identities=7% Similarity=0.057 Sum_probs=44.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.++..||+|++||+++ ++++.+|+++|+|||....+.. +.++ .+.+|++++|+
T Consensus 109 ~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 109 GKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp TCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCH
T ss_pred CCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCH
Confidence 3455678899999999987 5888899999999998888764 1222 37899999983
No 116
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.27 E-value=1.6e-07 Score=62.35 Aligned_cols=52 Identities=27% Similarity=0.476 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----eEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---T-GQ-----SIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~---~-g~-----til~~~h~ 72 (72)
+..||+|+ ||+++| +.+|++ |+|+|+.....+.+++.++.+ + |. ||++++||
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 45689999 999999 788887 999999999999999998765 3 64 89999997
No 117
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.22 E-value=4e-09 Score=64.47 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=40.1
Q ss_pred hhcCcCCCCChHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy858 6 YRHRESGRYSGGNKRKLSTAMAL-IGDPPLVFLD----EPTSGVDPISRHRLWAVLSQIQK 61 (72)
Q Consensus 6 ~~~~~~~~lS~G~~qr~~ia~~l-~~~p~~lllD----EP~~gld~~~~~~i~~~l~~~~~ 61 (72)
..++++.++|| |+ +++ +.+|+++++| |||+++|+...+.+.+.+.++.+
T Consensus 145 ~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 145 LSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 34566778888 44 667 9999999999 99999999999888888877643
No 118
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.18 E-value=8.1e-09 Score=65.97 Aligned_cols=36 Identities=33% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW 53 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~ 53 (72)
+..|||||||| |||++++|+++| |++||+.+.+.+.
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 67899999999 999999999999 9999999988876
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.17 E-value=6e-06 Score=49.49 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=29.9
Q ss_pred cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGVDPI-------S-----RHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~-------~-----~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.+|+++++|||++.+|+. . ...+...+.++.++ |.|||+++|.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~ 173 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQV 173 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 579999999999999875 3 23455555555544 9999999993
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=2.1e-07 Score=61.60 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 14 YSGGNKRKLSTAMALIGDPP---LVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~---~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
++.+++++++++++++.+|+ ++++|||| .++|+... .+++.+. .+.++|++.|
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVin 175 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIA 175 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEE
Confidence 34566677889999999999 99999999 69999874 3444444 3677777765
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.13 E-value=8.4e-08 Score=61.02 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++|+|++||+..+++++++|+++ ||| +.+.+.++++. .+.+|+++||+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~ 188 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHG 188 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEeccc
Confidence 68999999998888888888876 888 67778887764 58999999994
No 122
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=4.5e-06 Score=57.23 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=36.4
Q ss_pred cCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CceEEEEecC
Q psy858 30 GDPPLVFLDEP------TSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP------~~gld~~~~~~i~~~l~~~~~~--g~til~~~h~ 72 (72)
..|+++++||| |+|+|+..++.+.+++..+.++ +.++++++|+
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 46999999999 9999999999999999997543 6788888885
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.96 E-value=1.5e-06 Score=56.00 Aligned_cols=59 Identities=8% Similarity=-0.098 Sum_probs=43.5
Q ss_pred CCChHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 13 RYSGGNKRKLSTAMALI-GDPPLVFLDE---PT------SGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~-~~p~~lllDE---P~------~gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
.+|+|++++..++++.. .+|++++||| |+ .++|+..+..+.+.+.++.+ .|.+|++++|
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde 327 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES 327 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEEC
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 45566677777777664 6999999999 65 58899999999999988754 3889999887
No 124
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.95 E-value=1.7e-06 Score=57.19 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=45.1
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.++.++|+|++|+++++++++..|.++++ +.+|......+..+...+.+.+.+++++|
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence 455677999999999999999999999999 89998776434333333334577888776
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.92 E-value=2.7e-05 Score=50.57 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+++.++..+|+++++|||+ |+... ...++. ...|++++.++|+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~~~g~~vi~t~H~ 243 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-AETGHLVFGTLHT 243 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-HTTTCEEEECCCC
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-HhcCCEEEEEECc
Confidence 468999999999999999999 66553 333443 3458999999985
No 126
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.84 E-value=3.1e-05 Score=50.93 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGVDPISR------------HRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~------------~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
.+|+++++|||++.++.... ..+...|++++++ |.|||+++|.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 57999999999999986432 5567777777655 9999999994
No 127
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.70 E-value=2.3e-07 Score=58.61 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.2
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPI 47 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~ 47 (72)
..+..++||||+||++++++...+|+++|+|||++++|+.
T Consensus 129 p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 129 PKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 3455688999999999873333389999999999999984
No 128
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.63 E-value=2e-05 Score=55.42 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=48.4
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEE-ec
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLT-SH 71 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~-~h 71 (72)
..+..+|+|+.++..++..++.+++++|+|||.. ++|......+...+........+++++ ||
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 3455678999999999999999999999999996 999877666666665544445666664 54
No 129
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.55 E-value=0.00031 Score=47.39 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=44.4
Q ss_pred hcCcCCCCChHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 7 RHRESGRYSGGNKRKLSTAMALI--G---------------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~--~---------------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
..+..+..||||+|...++.+.+ . .-+++++||. +-+|....+.++++++++ |.=+|++
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliia 448 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIA 448 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 34457789999999655554322 1 3368999999 999999999999999864 5555655
Q ss_pred e
Q psy858 70 S 70 (72)
Q Consensus 70 ~ 70 (72)
+
T Consensus 449 t 449 (483)
T 3euj_A 449 A 449 (483)
T ss_dssp E
T ss_pred C
Confidence 4
No 130
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.52 E-value=0.00051 Score=45.41 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=42.4
Q ss_pred CCCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 12 GRYSGGNKRKLSTAMALI--GDPPLVFLDEPTSGVD--------PISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~--~~p~~lllDEP~~gld--------~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
..+|.++.+ +.++.+. .+|+++++|+++...+ ......+...|+.++++ |++|++++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 467888876 4555555 6799999999987663 23345566677777655 999999998
No 131
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.52 E-value=0.00033 Score=45.21 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCCC----------H---HHHHHHHHHHHHH----HhCCceEEEEec
Q psy858 20 RKLSTAMALIGD--PPLVFLDEPTSGVD----------P---ISRHRLWAVLSQI----QKTGQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~~~--p~~lllDEP~~gld----------~---~~~~~i~~~l~~~----~~~g~til~~~h 71 (72)
+-+.++++++.. |+++++||+++.+. + ...+.+.+.++++ .+.|++||+++|
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh 196 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINE 196 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 456677777655 99999999999883 2 1222344444444 345999999998
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.00049 Score=41.06 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=30.9
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGV--DPISRHRLWAVLSQI-QKTGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gl--d~~~~~~i~~~l~~~-~~~g~til~~~h~ 72 (72)
.+|+++++|+|+..+ |+...+.+...+.++ ++.|.+|++++|.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~ 172 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQV 172 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 579999999999877 553344444444444 4569999999984
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=1.2e-05 Score=46.80 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=39.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+.++..+|+|++|++.++|++.++|+++ +|+...+.+++.+..+...+..++.+
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t 157 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPV 157 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEEC
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEEC
Confidence 4456689999999999999999998865 58888887877776553333334433
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.39 E-value=8.5e-07 Score=52.28 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHHHhcCCCEE-------EEeCCC---CCCCHHHHHHHHHHHHHHHhCCc
Q psy858 13 RYSGGNKRKLSTAMALIGDPPLV-------FLDEPT---SGVDPISRHRLWAVLSQIQKTGQ 64 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~l-------llDEP~---~gld~~~~~~i~~~l~~~~~~g~ 64 (72)
.|||||+||+++||+++.+|++. .=|.|. -.+|....+.+.+++.+...+|.
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence 49999999999999999998763 224443 12344556778888876655654
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.26 E-value=0.0009 Score=44.94 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCceEEEEecC
Q psy858 16 GGNKRKLSTAMALIGDPPLVFLDEPT----------SGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHR 72 (72)
Q Consensus 16 ~G~~qr~~ia~~l~~~p~~lllDEP~----------~gld~~~~~~i~~~l~~~~----~~g~til~~~h~ 72 (72)
++++.|-.+.++....|.++++||+. .|.|+...+.+..++..+- ..+..||.+||.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 56678888999999999999999983 3566666666666666552 236777777763
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00099 Score=42.68 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=45.2
Q ss_pred cCcCCCCChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 8 ~~~~~~lS~G~~qr~~ia~~l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.....+++++++.+. +.+...++-++++| +|..++|......+.+.+..... +..++++.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 3455678999988765 44445666788999 99999999988887777766433 67777776
No 137
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.21 E-value=0.00056 Score=41.42 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 25 AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 25 a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+...+..++++||| ||+.++..+++.+. ++.+|++++|+
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~ 139 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPS 139 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSS
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCC
Confidence 34556678999999 99999999998765 58999999996
No 138
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.19 E-value=0.0031 Score=39.65 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 15 SGGNKRKLSTAMALIGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 15 S~G~~qr~~ia~~l~~~p~~lllDEP-~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+..+.++.+++.+...+++++|+||| +.++|......+..+..... ...+++++
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEE
Confidence 34455688888888899999999999 99999988888887766542 34444433
No 139
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.07 E-value=0.0011 Score=42.76 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CceEEEEec
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-T-GQSIVLTSH 71 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~-g~til~~~h 71 (72)
..||.++.+++..|...+.+++++|.|+|...+ ..+...++.+.+ . |..+|++.|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEEec
Confidence 479999999999999999999999999986542 355556666543 4 788888864
No 140
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.05 E-value=0.00039 Score=46.23 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCceEEEEec
Q psy858 22 LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSH 71 (72)
Q Consensus 22 ~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~-~~~~g~til~~~h 71 (72)
+.++++|..+.+++++|||+..|.+.....+.+.+++ +...|.+|++++.
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 7899999999999999999999999999999999986 6667999888764
No 141
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.82 E-value=0.00077 Score=43.27 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy858 12 GRYSGGNKRKLSTAMAL---IG--DPPLVFLDEPT 41 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l---~~--~p~~lllDEP~ 41 (72)
..+|+|++||.++++++ .. ++.++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 76 89999999996
No 142
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.79 E-value=0.00099 Score=42.35 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCCChHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy858 12 GRYSGGNKRKL---STAMALIGDPPLVFLDEPTS 42 (72)
Q Consensus 12 ~~lS~G~~qr~---~ia~~l~~~p~~lllDEP~~ 42 (72)
...|+|+.+++ ++++++..+|+++|+|+|..
T Consensus 164 ~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 35688999998 89999999999999999975
No 143
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.65 E-value=0.0044 Score=40.89 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=34.6
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 31 DPPLVFLDEPTSGVDP-ISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 31 ~p~~lllDEP~~gld~-~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++++||+....+. ..++.+...+..+.+.|..+|++||+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 8999999999876654 67778888888877778899998874
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.51 E-value=6.5e-06 Score=48.06 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 15 SGGNKRKLSTAM------ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 15 S~G~~qr~~ia~------~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|+|+++++.++. ++..+++...+| .++|+...+. ++.+..+.+.+.++|.+||.
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d---~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~ 155 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKD---EQMGERCLEL-VEEFESKGIDERYFYNTSHL 155 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSS
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhcccc---ccCCHHHHHH-HHHHhhcCCCccEEEeCCCC
Confidence 445544544444 566666655566 3889988888 88887775557899999884
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.67 E-value=0.029 Score=35.30 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~---~g~til~~~h~ 72 (72)
.+|.++++||+... |......+..++..+.. .+.++|+++|+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 45789999999776 88888888887766554 57888888874
No 146
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.39 E-value=0.01 Score=34.38 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
....+++++.+|++.++| |+++|....+.+++.+.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988865
No 147
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.37 E-value=0.037 Score=34.86 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-Cce--EEEEec
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQS--IVLTSH 71 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~t--il~~~h 71 (72)
||.++++++..|...+.++++++.|+|... ...+...++++.++ |.. +|++.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 888999999999998889999999998643 33455556666544 667 888754
No 148
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.68 E-value=0.029 Score=35.29 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
+.+++ .+.+++++|+| |+|+|+.....+.++...
T Consensus 174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 44444 45899999999 889998776666655443
No 149
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.49 E-value=0.046 Score=35.55 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCcchhcCcCCCCChHHHHHHHHHHHH
Q psy858 1 MGLTEYRHRESGRYSGGNKRKLSTAMAL 28 (72)
Q Consensus 1 ~~l~~~~~~~~~~lS~G~~qr~~ia~~l 28 (72)
+|+.++.+..+.++| |++||+++++++
T Consensus 302 ~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 302 LGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred cCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 356677888999999 999999999875
No 150
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.32 E-value=0.1 Score=32.49 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=32.3
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++++++||+.. .-+...++.+...+....+.+..++++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 35699999999855 33457788888888877667777777765
No 151
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.08 E-value=0.079 Score=33.88 Aligned_cols=46 Identities=7% Similarity=-0.026 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 19 KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 19 ~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
.+.-.+++++..++.++++|.++. +.+.+.++.+.+ .+.+++++||
T Consensus 231 ~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 231 DEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeC
Confidence 344457888887777788885554 345555666653 4899999998
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.02 E-value=0.22 Score=30.42 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy858 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45 (72)
Q Consensus 15 S~G~~qr~~ia~~l~~~p~~lllDEP~~gld 45 (72)
++++..+..+..+...+|.++++||+.+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 4566777788888888999999999976544
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.96 E-value=0.075 Score=33.50 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=33.5
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CceEEEEec
Q psy858 20 RKLSTAMALI---GDPPLVFLDEPTSGVDP--------IS----RHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~---~~p~~lllDEP~~gld~--------~~----~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+.+..++.++ .+++++++|+.++-... .. ...+...|..++++ +.+||++.|
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 4566666666 57899999998875432 11 23344444455443 899999987
No 154
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.88 E-value=0.089 Score=33.83 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 16 GGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 16 ~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...+..++.++..+|+.+++||+.. ..+.+.+..+.....+++.++|.
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHA 286 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEEC
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECC
Confidence 555678899999999999999999986 34556666654333467888884
No 155
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.80 E-value=0.038 Score=35.28 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy858 12 GRYSGGNKRKLSTAMALIG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~------~p~~lllDEP~~gld~~~~~~i~~~l~~~~~ 61 (72)
..+|+|+++++..+++++. .|+++. ++++|......+++.+.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 4578999999999998887 577765 899999999999999887643
No 156
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.75 E-value=0.33 Score=31.29 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH----HhCCceEEEEec
Q psy858 20 RKLSTAMALI--GDPPLVFLDEPTSGVDPI-------------SRHRLWAVLSQI----QKTGQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~--~~p~~lllDEP~~gld~~-------------~~~~i~~~l~~~----~~~g~til~~~h 71 (72)
+...+++.++ .+++++++|+++.-.... ..+.+.+.++.+ .+.+++||+++|
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3445555553 679999999998766421 112334444443 334899999887
No 157
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.62 E-value=0.11 Score=33.10 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhC-CceEEEEec
Q psy858 20 RKLSTAMALI----GDPPLVFLDEPTSGVDPI--------S----RHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~----~~p~~lllDEP~~gld~~--------~----~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+.+..++.++ .+++++++|+.++-.... . ...+...|..++++ +.+||+++|
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 3344444444 568999999998765332 1 23344445555544 899999987
No 158
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.47 E-value=0.12 Score=33.15 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=35.9
Q ss_pred cCCCEEEEeCCCCCC---CHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGV---DPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gl---d~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..|.++++||--.-+ ++...+.+.++++..++.|..++++||+
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~ 306 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQN 306 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCC
Confidence 347899999987666 4778888999999888889999999985
No 159
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.35 E-value=0.064 Score=30.94 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy858 22 LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59 (72)
Q Consensus 22 ~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~ 59 (72)
...+++++.+|++.++| ++++|....+.+++.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34588899999999999 9999999999988888764
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.28 E-value=0.0099 Score=40.37 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=30.0
Q ss_pred HHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH----hCCceEEEEecC
Q psy858 27 ALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHR 72 (72)
Q Consensus 27 ~l~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~----~~g~til~~~h~ 72 (72)
++...|. ++++||+...++.. ...+.+.+..+. +.|.+++++||+
T Consensus 292 ~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQr 341 (512)
T 2ius_A 292 VLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQR 341 (512)
T ss_dssp BCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESC
T ss_pred ccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecC
Confidence 3455677 79999999888733 233444444442 338899999985
No 161
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.27 E-value=0.045 Score=32.89 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=32.5
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 19 KRKLSTAMALI--GDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 19 ~qr~~ia~~l~--~~p~~lllDEP~~--gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+..+..++..+ ...+++||||... .++......+.+++.+ +-++..+|+++.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr 161 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGR 161 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECC
Confidence 34455555666 4578999999754 2333344457777754 334778888765
No 162
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=93.21 E-value=0.53 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=37.4
Q ss_pred HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 28 LIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 28 l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+..+++.+++| .....+|..+...+.++.+++.+.|..+.++.
T Consensus 45 ~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 88 (130)
T 4dgh_A 45 IQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISG 88 (130)
T ss_dssp SSSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred hccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34678899999 78999999999999999999888888888764
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.75 E-value=0.00014 Score=43.12 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHH-HHHhcCCCEEEEeCCC-----------CCCCHHHHHHHHHHHHHHHhCCc
Q psy858 13 RYSGGNKRKLSTA-MALIGDPPLVFLDEPT-----------SGVDPISRHRLWAVLSQIQKTGQ 64 (72)
Q Consensus 13 ~lS~G~~qr~~ia-~~l~~~p~~lllDEP~-----------~gld~~~~~~i~~~l~~~~~~g~ 64 (72)
..|+|++|+++.+ ++++.++.++++|||. ..+|......+...++...+.|.
T Consensus 111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~ 174 (208)
T 3c8u_A 111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGL 174 (208)
T ss_dssp TEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCC
Confidence 4688999999887 7888888888899985 23455555555555555433344
No 164
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.75 E-value=2.2e-05 Score=48.78 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH---------HHHHHHHHHHHhCCceEEEE
Q psy858 13 RYSGGNKRKLSTAMALIGDPPL--VFLDEPTSGVDPISR---------HRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p~~--lllDEP~~gld~~~~---------~~i~~~l~~~~~~g~til~~ 69 (72)
.+|+| ||+++++++..+|++ +|+||.++.+|...+ ....+.+.. ..+|.|.+.+
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~g~t~~~~ 236 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQGLITLED 236 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH-HHTTSSCHHH
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHcCCCCHHH
Confidence 46778 899999999999999 999999999987632 223444433 3457665443
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.72 E-value=0.015 Score=39.73 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
..+++|++|++..+.....++.++++||... |++..+..+...+.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5688899999888888899999999999887 899999988888864
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.58 E-value=0.11 Score=30.29 Aligned_cols=42 Identities=7% Similarity=0.301 Sum_probs=28.6
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCce-EEEEec
Q psy858 30 GDPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQS-IVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~g-ld~~~~~~i~~~l~~~~~~g~t-il~~~h 71 (72)
.++.++++||...- -+......+..++......+.. +|++++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 56899999996443 2334477788888776655655 777765
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.56 E-value=1.3 Score=28.59 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=31.8
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCH----------------HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 20 RKLSTAMALI--GDPPLVFLDEPTSGVDP----------------ISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~--~~p~~lllDEP~~gld~----------------~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+.+.+++.++ ..|+++++|+-++-... .....++..|..+.++ +.+||++.|
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 3445556554 56899999987665531 1122333444455544 899999887
No 168
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.40 E-value=0.1 Score=32.06 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=27.2
Q ss_pred HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 28 LIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 28 l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+..+|+++|+||+-. ..+.......++-+......|..++.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 446899999999764 23322222233333444556888888876
No 169
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.07 E-value=0.00022 Score=44.42 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=36.6
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS------------GVDPISRHRLWAVL 56 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~------------gld~~~~~~i~~~l 56 (72)
.++.+.+||||++|++.+++|+.++|+++ ||++. --|...+..+++.+
T Consensus 131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 34456679999999999999999999964 98753 23666777776654
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.94 E-value=0.079 Score=30.66 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=24.9
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPTS-GVDPISRHRLW-AVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~-gld~~~~~~i~-~~l~~~~~~g~til~~~h 71 (72)
+.+++++++||+-. .++.+.+..+. .++......+..+|++|+
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 34678999999933 34444455344 455443345667777775
No 171
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=91.65 E-value=0.77 Score=25.16 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=36.1
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+++.+++| .....+|..+...+.++.+++.+.|..+.++.
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 91 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSG 91 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEES
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 678899999 78899999999999999999887788888764
No 172
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.53 E-value=0.15 Score=35.00 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=45.0
Q ss_pred CCCCChHH-HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 11 SGRYSGGN-KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 11 ~~~lS~G~-~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
...++.+. ++...+.+.++.++..++++.++.++|.... ....+++.+... +.||+++|+
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 55665554 5778899999999999999999999998743 466677776544 588888886
No 173
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=91.30 E-value=0.41 Score=25.07 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=36.6
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..+|+.+++| .....+|..+...+.++.+++.+.|..+.++.
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 83 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVG 83 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 3578889998 78899999999999999999988898888763
No 174
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=90.86 E-value=0.0016 Score=42.82 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=31.9
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEec
Q psy858 31 DP--PLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p--~~lllDEP~~gld~~~~~~i~~~l~~~-~~~g~til~~~h 71 (72)
+| ++.++|||+.++|+...+..++.+... .+.|.|++ +|
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh 180 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MK 180 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cc
Confidence 77 888999999999999999999998887 55566653 55
No 175
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=90.77 E-value=1.2 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=35.5
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+++.+++| .....+|......+.++.+++.+.|..+.++.
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 103 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAG 103 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEES
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 67899999 78999999999999999999888888888764
No 176
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.77 E-value=0.12 Score=32.49 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=24.0
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPT-SGVDPISRHRLWA-VLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~-~gld~~~~~~i~~-~l~~~~~~g~til~~~h 71 (72)
+.+++++++||.- ..++.+.+..++. ++.....++..+|++|+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN 256 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSN 256 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEES
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 4578899999983 3455555554444 55543234667777775
No 177
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=90.01 E-value=0.63 Score=25.05 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=35.7
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+++.+++| .....+|..+...+.++.+++.+ |..+.++.
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~ 84 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCN 84 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEEC
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEec
Confidence 678999999 78899999999999999999888 98888874
No 178
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.00 E-value=0.37 Score=27.65 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=26.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
++.++++||.-. +++.....+...+.+. ..+..+|++++
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEES
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeC
Confidence 467999999755 7777777776666432 23556676664
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.98 E-value=0.012 Score=37.28 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=28.2
Q ss_pred hcCcCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy858 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61 (72)
Q Consensus 7 ~~~~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~ 61 (72)
+..++..||+|+++|+.++ .+||+...+.+.+++++..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH
Confidence 3456678999999998543 56777777777777776543
No 180
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.01 E-value=0.11 Score=32.45 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=22.5
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 31 DPPLVFLDEPTSGVD---PISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 31 ~p~~lllDEP~~gld---~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.|.++++||+....+ ......+.+.+..+...+.++|+++|+
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 378999999876542 222222333222112236788888874
No 181
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.66 E-value=0.0048 Score=36.37 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy858 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~ 60 (72)
+++.+|.+.+|||+++++|..+.+.+.+.+....
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556666666777788888877777777776543
No 182
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.43 E-value=1.9 Score=28.29 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=26.6
Q ss_pred cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVDP----------ISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~----------~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.+++++++|..+.-... .....+...|+.++++ +++|++++|
T Consensus 309 ~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 309 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 47889999986542221 1223455556666554 899999887
No 183
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.24 E-value=0.0012 Score=43.63 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.2
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEE
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVF 36 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~ll 36 (72)
.+.+||||++|| ++++++.+|++..
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 566799999999 9999999999865
No 184
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.11 E-value=0.88 Score=27.52 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=26.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+++++++||-.. ++.. +.+.+..+.+.|..|+++.|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLD 125 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCS
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEecc
Confidence 489999999864 5543 444455555568999999873
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.92 E-value=3.9 Score=26.41 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-----H--------HHHHHHHHHHHHH---Hh-CCceEEEEec
Q psy858 20 RKLSTAMALI--GDPPLVFLDEPTSGVD-----P--------ISRHRLWAVLSQI---QK-TGQSIVLTSH 71 (72)
Q Consensus 20 qr~~ia~~l~--~~p~~lllDEP~~gld-----~--------~~~~~i~~~l~~~---~~-~g~til~~~h 71 (72)
+.+.++..++ .+++++++|..+.-.. - ...+.+.+.++.+ .+ .+++||++.|
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 3455566665 4689999999876441 0 1113355555555 33 4899999877
No 186
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.46 E-value=0.59 Score=28.97 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+++++++|| ...+++.....+.+.+.+... ...++++++
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICN 171 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEES
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeC
Confidence 456999999 778899888888888776432 344555553
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.39 E-value=1.5 Score=29.19 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHH
Q psy858 22 LSTAMALIGDPPLVFLDEPT-SG--VDPISRHRLWAVLSQI 59 (72)
Q Consensus 22 ~~ia~~l~~~p~~lllDEP~-~g--ld~~~~~~i~~~l~~~ 59 (72)
-++..+...+++++|+|+|. .+ .|+....++..+....
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 34555556789999999997 35 7888888888766554
No 188
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=86.18 E-value=2.6 Score=22.65 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.0
Q ss_pred HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 28 LIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 28 l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+..+++.+++| +-...+|......+..+.+.+.+.|..+.++.
T Consensus 48 ~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~ 91 (125)
T 2ka5_A 48 LNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVS 91 (125)
T ss_dssp TTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred hhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 44567889999 78999999999999999998877788887764
No 189
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.09 E-value=2.2 Score=26.28 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=26.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+.+++++||-.-..+ +.++++.+.+.|..|++..++
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecc
Confidence 6789999999876644 555555555578999987654
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.06 E-value=4.5e-05 Score=51.54 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE--EecC
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL--TSHR 72 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~--~~h~ 72 (72)
..+|+|++||.+++ ++ | ++|+|+...+.+++.+.++...+.|+++ +||+
T Consensus 399 ~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~ 449 (511)
T 2oap_1 399 MWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKK 449 (511)
T ss_dssp EEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTH
T ss_pred EEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHH
Confidence 34688887776543 12 7 9999998877777777666556888875 7873
No 191
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=84.75 E-value=2.4 Score=22.89 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+++.+++| +-...+|..+...+.++.+++.+.|..++++.
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 87 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMAR 87 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEEC
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 46789999 77889999999999999999887788888764
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.60 E-value=0.68 Score=29.37 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEe
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTS 70 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g-~til~~~ 70 (72)
.+..++++..+++..+.+|+++|+.-..+..|... .....+++.+...| .++++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~n 211 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLT 211 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEE
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEe
Confidence 56678899999999999999777764333344332 34455666654444 5666665
No 193
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.74 E-value=2.2 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=26.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.++.++++||. ..+++.....+...+... ..+..+|+++.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEES
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeC
Confidence 46789999995 456777777777776553 23455555553
No 194
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=83.72 E-value=3.2 Score=24.49 Aligned_cols=53 Identities=13% Similarity=0.008 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 15 SGGNKRKLSTAMALIGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 15 S~G~~qr~~ia~~l~~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+.|.-.+. ....+.+.+++++||.-. ++|........+.+.....+-.+++++
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 44554443 234578899999999965 677776644443333332222345544
No 195
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=82.84 E-value=3.5 Score=21.34 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 24 TAMALIGD-PPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 24 ia~~l~~~-p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+...+..+ ++.+++| .....+|......+..+.+.+.+.|..+.++.
T Consensus 34 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 82 (116)
T 1th8_B 34 VTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCA 82 (116)
T ss_dssp HHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 33444444 7888999 67889999999999999999887788877764
No 196
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=82.54 E-value=2.1 Score=23.65 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 26 MALIGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 26 ~~l~~~p--~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.|+-.+. .+++.|+-+..-|+..+..+.+++....+.|..|.+++.
T Consensus 48 ~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~ 95 (124)
T 1x52_A 48 KANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSS 95 (124)
T ss_dssp HHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHcCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 3444443 356666665555788888888866555566888888764
No 197
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=82.47 E-value=7.2 Score=25.49 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=37.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 12 ~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
..|+..+.+++.-+...+...++++.|+|... . ..+...++++.+ .+..+|++.+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--L---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--H---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--H---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 35888898998888877778889998877443 3 234445555543 4778887743
No 198
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.17 E-value=6.9 Score=25.90 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=26.8
Q ss_pred cCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 30 GDPPLVFLDEPTS---G---VDP-ISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~---g---ld~-~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.+++++++|--+. + -+. .....+...|+.++++ +++|++++|
T Consensus 353 ~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q 402 (503)
T 1q57_A 353 LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 402 (503)
T ss_dssp TCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEc
Confidence 4699999995432 1 111 2233455566666554 999999988
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.70 E-value=4.7 Score=21.98 Aligned_cols=40 Identities=0% Similarity=0.131 Sum_probs=28.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+..++++||.- .+++..+..+...+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 46799999964 67888888888887764333566777664
No 200
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.30 E-value=1.6 Score=27.20 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=25.4
Q ss_pred cCCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHh-CCceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVD--------PIS----RHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld--------~~~----~~~i~~~l~~~~~-~g~til~~~h 71 (72)
.+++++++|..+.-.. ... ...+...|..+.+ .+.+||++.|
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 4588999998765321 111 1334444444444 4899999876
No 201
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=80.82 E-value=4.1 Score=20.80 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.0
Q ss_pred HHHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 26 MALIGDP-PLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 26 ~~l~~~p-~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..+...+ +.+++| .-...+|......+..+.+.+.+.|..+.++.
T Consensus 37 ~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 83 (110)
T 1sbo_A 37 NFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSS 83 (110)
T ss_dssp THHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3343444 788999 78889999999999999998887788887764
No 202
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=78.53 E-value=3.6 Score=23.87 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 32 p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
-..+++| +|.++...+.+.+.++++.......|+.||
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 71 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTN 71 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSS
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 3467777 456677777788888776434677899998
No 203
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=78.46 E-value=4.3 Score=23.77 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++++||-.. +|+.. .+.++.+...|..|++..+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl 116 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGL 116 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEEC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEec
Confidence 579999999544 55433 4456666666889888765
No 204
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=78.15 E-value=2.4 Score=26.47 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 25 AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 25 a~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
...+..+.+++++||+-..++......+.+.+.+
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~ 103 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGL 103 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTT
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhc
Confidence 3456778899999998776776666666666644
No 205
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=77.95 E-value=8.9 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=27.8
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.-..+.-++++| |+.|+++...+.+ +.+.+.+.+++++.|
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~~----~~~~~~~ip~ilv~N 134 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERAW----TVAERLGLPRMVVVT 134 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHHH----HHHHHTTCCEEEEEE
T ss_pred HhhcCcEEEEEc-CCcccchhHHHHH----HHHHHccCCEEEEec
Confidence 335677788889 9999998877433 222335778888776
No 206
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.94 E-value=8.7 Score=24.27 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCCEEEEeCC
Q psy858 21 KLSTAMALIGDPPLVFLDEP 40 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP 40 (72)
+-.+..+-...|.++++||.
T Consensus 166 ~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETH
T ss_pred HHHHHHHHhcCCeEEEEeCc
Confidence 33445555678899999996
No 207
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=77.79 E-value=4.5 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 41 TSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 41 ~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..||++...+.+.+++....++|..+.+++
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~s 59 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458999999999999999888898877765
No 208
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=77.76 E-value=2.2 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+++++++||--. +++. +.+.+..+.++|..|+++.+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEee
Confidence 578999999754 4432 44556656666888888765
No 209
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=76.66 E-value=0.9 Score=29.29 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCCChHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy858 11 SGRYSGGNKRKLSTA----MAL-IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia----~~l-~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~ 61 (72)
+..+|+++++++..+ +.+ ..+|++ +|++++|......+++.+.+...
T Consensus 302 ~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 302 IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 455787888877776 554 333343 79999999999999998887643
No 210
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.93 E-value=5 Score=24.05 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH
Q psy858 22 LSTAMALIGDPPLVFLDEPTS----------GVDPISRHRLWAVLSQI 59 (72)
Q Consensus 22 ~~ia~~l~~~p~~lllDEP~~----------gld~~~~~~i~~~l~~~ 59 (72)
-.+..+....|.++++||.-. +-+......+..++..+
T Consensus 101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 344455667789999999632 23556677777777665
No 211
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=75.58 E-value=2.6 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=25.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+++++++||. ..++......+.+.+.+. ..+..+|++++
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATT 157 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEES
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeC
Confidence 34689999995 456777777776666432 12455565554
No 212
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.49 E-value=5.2 Score=26.39 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCce--EEEEec
Q psy858 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQS--IVLTSH 71 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~t--il~~~h 71 (72)
|+..+.+++.-+...+.+.++++.|+|. ++... +...++++.+ .|.. +|++.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~---i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH---HHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH---HHHHHHHHHHHhCCCCeEEEEec
Confidence 6777778888777777788899988874 44433 4444555433 3667 887753
No 213
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=75.42 E-value=9.1 Score=25.05 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=31.1
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+++.|+-+..-|+..+..+.+++....+.|..|.+++.
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~ 348 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSS 348 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECC
Confidence 589999998888998888888777776666777777764
No 214
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.42 E-value=7.2 Score=23.96 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 23 STAMALIGDPPLVFLDEPTS-------------GVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 23 ~ia~~l~~~p~~lllDEP~~-------------gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
.+..+....|.++++||.-. +........+...+..+.. .+..||.+|+
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 34455566799999999532 2223334445544443322 2455666664
No 215
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.13 E-value=2.2 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.266 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-hcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEec
Q psy858 19 KRKLSTAMAL-IGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 19 ~qr~~ia~~l-~~~p~-~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
+|++.+++++ ...|. ++|...+++|.+.. +.++.+.+ -+.+.+++||
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 4677777765 34464 55555588876544 23344443 4788888887
No 216
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=75.07 E-value=5.3 Score=24.15 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=24.5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.++++|= |.++...+.+.+.+++........|+.||
T Consensus 85 ~~ilIDt---g~~~~~~~~l~~~i~~~~~~~I~~Ii~TH 120 (270)
T 4eyb_A 85 RVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTH 120 (270)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred EEEEEeC---CCCHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 4566663 45778888888887764333456788898
No 217
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=75.02 E-value=7.4 Score=20.57 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=35.2
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEe
Q psy858 30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~-~g~til~~~ 70 (72)
.+++.+++| .....+|......+..+.+...+ .|..+.++.
T Consensus 46 ~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~ 88 (121)
T 3t6o_A 46 AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCS 88 (121)
T ss_dssp SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEES
T ss_pred cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467889999 78899999999999999999887 788877764
No 218
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=74.54 E-value=6.4 Score=23.32 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 41 TSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 41 ~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-+|||+...+.+.+++....++|..+.+++
T Consensus 30 v~gLdp~~a~al~~m~~aA~~~Gi~l~v~s 59 (179)
T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 369999999999999998877788766554
No 219
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=74.36 E-value=14 Score=23.58 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHh--CCceEEEEe
Q psy858 20 RKLSTAMALIGDPPLVFLDE-PTSGVDPISRHRLWAVLSQIQK--TGQSIVLTS 70 (72)
Q Consensus 20 qr~~ia~~l~~~p~~lllDE-P~~gld~~~~~~i~~~l~~~~~--~g~til~~~ 70 (72)
=.+++..+++..|+++++=| |+ | .+.+.+.+++..+ .+.++++++
T Consensus 174 G~lAl~a~lA~ga~~iliPE~~~---~---~~~i~~~i~~~~~~gk~~~iIvva 221 (319)
T 1zxx_A 174 GDIAMRVGVACGADAIVIPERPY---D---VEEIANRLKQAQESGKDHGLVVVA 221 (319)
T ss_dssp CHHHHHHHHHTTCSEEECTTSCC---C---HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEeCCCCC---C---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 36889999999999988854 44 3 2456666665442 366777765
No 220
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=73.98 E-value=8.3 Score=20.66 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=25.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.-+.-+.||--.+.|++.++..+..+...+.+. +..|.++.|
T Consensus 3 ~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Gh 45 (118)
T 2hqs_H 3 QQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGH 45 (118)
T ss_dssp -CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 345556666666777777777666666555543 455666665
No 221
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=72.76 E-value=9.7 Score=22.04 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred hcCCCEEEEeCCCCCC----------------C---HHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGV----------------D---PISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gl----------------d---~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|...- + ...++.+.+.+.++.+.|..|+++.
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~ 85 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITE 85 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEES
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 4789999999765421 1 1244556777777777788888874
No 222
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=72.62 E-value=6 Score=24.68 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=26.1
Q ss_pred CCC--EEEEeCCCC----C--CCH-HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 31 DPP--LVFLDEPTS----G--VDP-ISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 31 ~p~--~lllDEP~~----g--ld~-~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+++ ++++|--+. . -+. .....+...|+.++++ +++|++++|
T Consensus 179 ~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 179 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 229 (315)
T ss_dssp SSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 678 999995321 1 111 2334455666666655 999999988
No 223
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=72.44 E-value=6.1 Score=21.69 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.|..+.+++++.+|...+.......+.+.+.... .-|++++.|
T Consensus 72 slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~--~~~~lvi~~ 114 (140)
T 1jql_B 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH--DDLLLIVRG 114 (140)
T ss_dssp CTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC--SSCCEEEEC
T ss_pred CCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC--CCEEEEEEe
Confidence 5678889999999987776666666666665432 334454443
No 224
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=72.01 E-value=5.9 Score=25.25 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.++++++|-|..|++....+. +. .+..++++|.+
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~-------l~-~~g~ivyvsc~ 328 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKM-------VQ-AYPRILYISCN 328 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHH-------HT-TSSEEEEEESC
T ss_pred CCCEEEECcCccccHHHHHHH-------Hh-CCCEEEEEECC
Confidence 578999999999988643332 22 45677777753
No 225
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=71.55 E-value=2.9 Score=25.28 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++++||-.- +|+.. .+.+..+...|..|++...
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhhCCCEEEEEec
Confidence 478999999866 55432 2556665566889888765
No 226
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=71.54 E-value=17 Score=23.23 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHh--CCceEEEEe
Q psy858 21 KLSTAMALIGDPPLVFLDE-PTSGVDPISRHRLWAVLSQIQK--TGQSIVLTS 70 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDE-P~~gld~~~~~~i~~~l~~~~~--~g~til~~~ 70 (72)
++++..+++..|+++++=| |++ . +.+.+.+++-.+ .+.++++++
T Consensus 176 ~lAl~a~lA~ga~~iliPE~~~~---~---~~i~~~i~~~~~~gk~~~iIvva 222 (320)
T 1pfk_A 176 DLTLAAAIAGGCEFVVVPEVEFS---R---EDLVNEIKAGIAKGKKHAIVAIT 222 (320)
T ss_dssp HHHHHHHHHTTCSEEECTTSCCC---H---HHHHHHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEeCCCCCC---H---HHHHHHHHHHHHcCCCcEEEEEe
Confidence 6889999999999988854 443 2 455566665432 356777665
No 227
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=71.48 E-value=9.9 Score=20.47 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHHHh-cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 24 TAMALI-GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 24 ia~~l~-~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+...+. .+++.+++| .-...+|......+....+.++..|..++++.
T Consensus 34 ll~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~G 82 (123)
T 3zxn_A 34 LLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTG 82 (123)
T ss_dssp HHHHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 334444 468899999 78889999999999999998876677777663
No 228
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=70.43 E-value=8.1 Score=23.36 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=25.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+++++++||. ..++......+...+.+. ..+..+|+++
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~-~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMF-SSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEE
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhc-CCCCeEEEEe
Confidence 46789999995 456677777777776553 2244555554
No 229
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=70.14 E-value=8.8 Score=23.51 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld-~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+++++++||.-. +. ......+...+.+.. .+..+|+++.
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEES
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeC
Confidence 678999999743 44 666677777776543 3556666654
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=70.09 E-value=7.7 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=25.5
Q ss_pred HHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy858 24 TAMALIGDP-PLVFLDEPTSGVDPISRHRLWAVLSQI 59 (72)
Q Consensus 24 ia~~l~~~p-~~lllDEP~~gld~~~~~~i~~~l~~~ 59 (72)
+..++...| .++++||. ..+++..+..+...+.+-
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 444555444 69999997 567888888888887653
No 231
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=70.06 E-value=9.6 Score=19.73 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=33.5
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+++.+++| +....+|......+..+.+.+.+.|..+.++.
T Consensus 41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 81 (117)
T 1h4x_A 41 AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLN 81 (117)
T ss_dssp SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 56788888 67889999999999999988877788877653
No 232
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=68.87 E-value=4.3 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=21.9
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHHH----hCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPI-SRHRLWAVLSQIQ----KTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~-~~~~i~~~l~~~~----~~g~til~~~h 71 (72)
.|.++++||.-.-.+.. ....+..++.... ..+..+|++++
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 35699999975432221 3444555554332 23567777775
No 233
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=68.59 E-value=11 Score=22.38 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=26.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.+++++||---- .. +.+.+..+.+.|+.||+...+
T Consensus 89 ~~~~DvIlIDEaQFf-k~-----~ve~~~~L~~~gk~VI~~GL~ 126 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF-PD-----IVEFCEAMANAGKTVIVAALD 126 (195)
T ss_dssp HHTCSEEEESSGGGC-TT-----HHHHHHHHHHTTCEEEEEEES
T ss_pred ccCCCEEEEEchhhh-HH-----HHHHHHHHHHCCCeEEEEecc
Confidence 567899999998665 22 444456666679999988653
No 234
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=68.04 E-value=6 Score=22.77 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=24.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++| +|.++...+.+.+.++++.......|+.||
T Consensus 33 ~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 68 (227)
T 3iog_A 33 GVTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTN 68 (227)
T ss_dssp CEEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSS
T ss_pred eEEEEE---CCCChHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 467777 356666777777777664323567799998
No 235
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=67.26 E-value=8.3 Score=26.25 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=30.5
Q ss_pred hcCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEP-------------TSGVDP------ISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP-------------~~gld~------~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-| .+..+. ..++.+.+.+.++.+.|..++++.
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~ 291 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 291 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 578999999988 333333 234456778888777888888875
No 236
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.30 E-value=6.5 Score=23.74 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+++++++||. ..++......+...+.+.. .+..+|+++.
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~-~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYS-NSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTT-TTEEEEEEES
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccC-CCceEEEEeC
Confidence 4789999995 3456666666666665532 3455666553
No 237
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=66.19 E-value=12 Score=19.41 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 27 ALIGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 27 ~l~~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+...+ .+++| +....+|......+..+.+...+.|..+.++.
T Consensus 38 ~~~~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 81 (117)
T 4hyl_A 38 RVTAKG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVLVG 81 (117)
T ss_dssp GCCTTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHccCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 333444 88888 67889999999999999998887788877753
No 238
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=65.56 E-value=12 Score=25.49 Aligned_cols=42 Identities=24% Similarity=0.480 Sum_probs=30.5
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEP-------------TSGVDPI------SRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP-------------~~gld~~------~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-| .+..+.. .++.+.+.+.++.+.|..++++.
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~ 292 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQ 292 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 578999999998 4444432 34456778877777888888875
No 239
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=65.48 E-value=11 Score=21.94 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHh--CCceEEEEec
Q psy858 49 RHRLWAVLSQIQK--TGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~~--~g~til~~~h 71 (72)
.+++...+.++.+ .+.+|++|+|
T Consensus 128 ~~R~~~~l~~l~~~~~~~~vlvVsH 152 (208)
T 2a6p_A 128 NDRADSAVALALEHMSSRDVLFVSH 152 (208)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 3445666666543 4678999999
No 240
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=65.14 E-value=9.5 Score=20.69 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+..++++||.- .+++..+..+...+.. ...+..+|.+|.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~-~~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQ-EHRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHS-SSCSSCEEEEES
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhh-cCCCEEEEEECC
Confidence 56789999984 6788888888887733 223556776664
No 241
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=65.08 E-value=22 Score=22.07 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 31 DPPLVFLDEPTS--------------GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 31 ~p~~lllDEP~~--------------gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.-.++.+|-|-. +.+.....++.+.+.++.+.|.-++++-++
T Consensus 187 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d 242 (284)
T 2dpm_A 187 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSS 242 (284)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEES
T ss_pred CCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 336888898742 357778889999999887667888887664
No 242
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=65.00 E-value=9.5 Score=23.59 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC
Q psy858 14 YSGGNKRKLSTAMALI--GDPPLVFLDEPTSGVDPIS-RHRLWAVLSQIQKT 62 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~--~~p~~lllDEP~~gld~~~-~~~i~~~l~~~~~~ 62 (72)
+++|++ .++..+. ..|.++++ +.+|... +..+.+.+.++.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHh
Confidence 788876 3445555 67888887 6777765 56677777777653
No 243
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.52 E-value=40 Score=26.48 Aligned_cols=51 Identities=10% Similarity=0.227 Sum_probs=30.9
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hCCceEEEEec
Q psy858 21 KLSTAMALI--GDPPLVFLDEPTSGVD-P------------ISRHRLWAVLSQI---Q-KTGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~--~~p~~lllDEP~~gld-~------------~~~~~i~~~l~~~---~-~~g~til~~~h 71 (72)
....++.++ .+|+++++|+...-.. . ...+.+...++.+ . +.|++||+++|
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinq 867 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 334444332 5799999999876542 1 1123455555553 3 34999999987
No 244
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=63.98 E-value=13 Score=23.25 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 42 SGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 42 ~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.++|+...+.+.+.|.++.++|.-+++|+
T Consensus 67 ~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 67 VGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 68999999999999999988887777664
No 245
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=63.94 E-value=12 Score=23.35 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCEEEEeCCCCCCC-----HH---------------HHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVD-----PI---------------SRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld-----~~---------------~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++++|-|.+|+. +. .+..+.+.+.++.+.|..++++|.
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 358899999988753 21 113444444444455767777764
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=63.78 E-value=27 Score=22.60 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-----H----------HHHHHHHHHHHH---H-HhCCceEEEEec
Q psy858 16 GGNKRKLSTAMAL--I--GDPPLVFLDEPTSGVD-----P----------ISRHRLWAVLSQ---I-QKTGQSIVLTSH 71 (72)
Q Consensus 16 ~G~~qr~~ia~~l--~--~~p~~lllDEP~~gld-----~----------~~~~~i~~~l~~---~-~~~g~til~~~h 71 (72)
.+++..+.++..+ + .+|+++++|.-++-.. - ...+.+...+++ + .+.+.++|++.|
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 4555546666665 3 3689999998655331 1 122334444443 2 346999999987
No 247
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=62.92 E-value=24 Score=21.76 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 32 PPLVFLDEPTS--------------GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 32 p~~lllDEP~~--------------gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.++.+|-|-. +.+.....++.+.+.++.+.|.-++++-++
T Consensus 175 ~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~~~~~~lS~~d 229 (278)
T 2g1p_A 175 SSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHD 229 (278)
T ss_dssp TEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 35888998853 246667788999999887778888887664
No 248
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=61.80 E-value=16 Score=24.94 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCC-------------CC-CH-----HHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTS-------------GV-DP-----ISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~-------------gl-d~-----~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+|+++++|-|.. .. +. ..++.+...+.++.+.|..++++.
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~ 299 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTT 299 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEc
Confidence 899999998752 22 31 334557888888877798888875
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=61.65 E-value=11 Score=26.75 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSG 43 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~g 43 (72)
+..+..+....|.++++||.-..
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l 309 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGT
T ss_pred HHHHHHHHhcCCcEEEeccHHHh
Confidence 34455566678899999998443
No 250
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.24 E-value=30 Score=22.30 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHHHH-HHHHHhcCCCEEEEeCCCCCCCH-----------H-HHHHHHHHHHHHHhCCceEEEEec
Q psy858 19 KRKLS-TAMALIGDPPLVFLDEPTSGVDP-----------I-SRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 19 ~qr~~-ia~~l~~~p~~lllDEP~~gld~-----------~-~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+.+. +...+.... ++++||-.+--.. . .++.+.++.....+.|.+++++++
T Consensus 170 e~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 170 NVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 34443 344444444 9999996553221 1 222233332222334889888764
No 251
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.78 E-value=3.5 Score=26.65 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=26.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 32 p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
|-++++||-.+-... ..+.+++...++.|..+++++++
T Consensus 280 ~~~~~lDE~~~l~~~---~~l~~~~~~~R~~g~~~~~~~Qs 317 (437)
T 1e9r_A 280 RLWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQS 317 (437)
T ss_dssp CEEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESC
T ss_pred cEEEEEEcccccccc---hhHHHHHHHHhccCCEEEEEecC
Confidence 457999997654321 14556777777779999999874
No 252
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=60.58 E-value=11 Score=22.10 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHh-----CCceEEEEec
Q psy858 49 RHRLWAVLSQIQK-----TGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~~-----~g~til~~~h 71 (72)
..++...+.++.+ .+.+|++|||
T Consensus 155 ~~R~~~~l~~l~~~~~~~~~~~vlvVsH 182 (237)
T 3r7a_A 155 STRIKAEIDKISEEAAKDGGGNVLVVVH 182 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEcC
Confidence 3445555555532 4789999999
No 253
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=60.52 E-value=4.2 Score=24.26 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=23.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~ 60 (72)
..+|++++-||..+|=|..-...+.+.|..++
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La 100 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLA 100 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHH
Confidence 34789999999988877666666666655543
No 254
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=60.02 E-value=21 Score=24.17 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=31.2
Q ss_pred hcCCCEEEEeCCCCC-------------CC------HHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSG-------------VD------PISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~g-------------ld------~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|... .+ ...++.+.+.+.++.+.|..++++.
T Consensus 229 ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~ 289 (528)
T 3p9d_D 229 KEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQ 289 (528)
T ss_dssp ESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 678999999988662 22 2344568888888888898888875
No 255
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=59.86 E-value=4.8 Score=24.44 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCCEEEEeCCCCCCCHHH----------------HHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPIS----------------RHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~----------------~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++++|-|.+|+.... +..+.+.+.++.+.|..++++|.
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 458999999999865422 23444444444455667777653
No 256
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=59.73 E-value=14 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.519 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHh--CCceEEEEec
Q psy858 50 HRLWAVLSQIQK--TGQSIVLTSH 71 (72)
Q Consensus 50 ~~i~~~l~~~~~--~g~til~~~h 71 (72)
+++...+.++.+ .+.+|++|+|
T Consensus 127 ~R~~~~l~~l~~~~~~~~vlvVsH 150 (207)
T 1h2e_A 127 QRALEAVQSIVDRHEGETVLIVTH 150 (207)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEcC
Confidence 344555666543 3679999999
No 257
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=59.52 E-value=27 Score=21.26 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 32 PPLVFLDEPTS--------GVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 32 p~~lllDEP~~--------gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
-.++.+|-|-. +.+.....++.+.++++.+.|.-++++-+
T Consensus 165 ~~fvY~DPPY~~~~~~Y~~~f~~~d~~~L~~~l~~l~~~g~~~~lS~~ 212 (259)
T 1yf3_A 165 GDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNV 212 (259)
T ss_dssp TEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CeEEEECCCCCCccchhccCCCHHHHHHHHHHHHHHhhCCCEEEEEee
Confidence 35888998853 36788889999999988766777887765
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=59.44 E-value=16 Score=24.09 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=26.5
Q ss_pred cCCC--EEEEeCCCC----C--CC-HHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 30 GDPP--LVFLDEPTS----G--VD-PISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 30 ~~p~--~lllDEP~~----g--ld-~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.+++ ++++|--.. + -+ ......+...|+.++++ |++|++++|
T Consensus 307 ~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 358 (444)
T 3bgw_A 307 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 358 (444)
T ss_dssp SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4789 999995422 1 11 12233455566666555 999999988
No 259
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=59.38 E-value=7.3 Score=24.15 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHHHHHHHHHHHH
Q psy858 14 YSGGNKRKLSTAMALIGDP--------------PLVFLDEPTS-GVDPISRHRLWAVLS 57 (72)
Q Consensus 14 lS~G~~qr~~ia~~l~~~p--------------~~lllDEP~~-gld~~~~~~i~~~l~ 57 (72)
+-+|..|.-++.+++-.+. -.+++||.++ .|+....+...++.+
T Consensus 202 la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~~~~~~ 260 (289)
T 1ne7_A 202 LITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLML 260 (289)
T ss_dssp EECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHHTHH
T ss_pred EEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhhHHHHh
Confidence 4577888888888876654 3799999987 676544444444433
No 260
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=59.10 E-value=8.1 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=28.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+|+++++|.+.+. .+.+..++.++.+.|..++++..
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~~g~~lvii~~ 250 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQTGKPLLIIAE 250 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHTTTCCEEEEES
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHhcCCCEEEEcC
Confidence 468999999998664 34466777777777888888753
No 261
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=58.81 E-value=6.6 Score=24.54 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+.+++++||.- .++..+...+.+.+.+.. .+..+|++++
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~-~~~~~Il~t~ 146 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATR 146 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEES
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCC-CCeEEEEEeC
Confidence 456899999963 466666666655554321 2445566654
No 262
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=58.78 E-value=25 Score=20.51 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=28.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCceEEEEec
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK--TGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~--~g~til~~~h 71 (72)
..+++++|+..+.+.++......+..+...+.. ....+++.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 456799999888888888766666655543322 1256777765
No 263
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=58.65 E-value=24 Score=24.03 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=29.6
Q ss_pred hcCCCEEEEeCCCC-------------CCCH------HHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTS-------------GVDP------ISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~-------------gld~------~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|.. ..+. ..++.+.+.+.++.+.|..++++.
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~ 296 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSK 296 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEES
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 78999999998842 2322 233556777777777788888864
No 264
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=58.51 E-value=8.2 Score=22.37 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=28.0
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 29 IGDPPLVFLDEPTS----GVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~----gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
..+++++++|.-+. .-+......+...+..+.++ ++++++++|
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q 180 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45789999996422 12344455556666666554 999999886
No 265
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=58.15 E-value=13 Score=20.10 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=22.7
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 28 l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
--..|+++|+|==.-+.|-.. +.+.+ ++.+..||++|
T Consensus 50 ~~~~~DlvllDi~mP~~~G~e---l~~~l---r~~~ipvI~lT 86 (123)
T 2lpm_A 50 RKGQFDIAIIDVNLDGEPSYP---VADIL---AERNVPFIFAT 86 (123)
T ss_dssp HHCCSSEEEECSSSSSCCSHH---HHHHH---HHTCCSSCCBC
T ss_pred HhCCCCEEEEecCCCCCCHHH---HHHHH---HcCCCCEEEEe
Confidence 347899999997666666432 33333 33466666654
No 266
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=58.12 E-value=15 Score=20.36 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHh-CCceEEEEecC
Q psy858 50 HRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 50 ~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
+++.+.+.++.+ .+.++++|+|.
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~ 109 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHL 109 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred HHHHHHHHHHhccCCCeEEEEeCH
Confidence 456666666543 57799999994
No 267
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=57.44 E-value=25 Score=21.68 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----------hCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ----------KTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~----------~~g~til~~~h 71 (72)
+..++++||.- .++...+..+...+.+.. ..+..+|.+|+
T Consensus 96 ~~g~L~LDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 96 DGGTLFLDEIG-DISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp TTSEEEEESCT-TCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred CCCEEEEeccc-cCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence 45799999954 567777777776665421 12356777765
No 268
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=57.42 E-value=17 Score=21.70 Aligned_cols=22 Identities=14% Similarity=0.284 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHh----CCceEEEEec
Q psy858 50 HRLWAVLSQIQK----TGQSIVLTSH 71 (72)
Q Consensus 50 ~~i~~~l~~~~~----~g~til~~~h 71 (72)
+++...+.++.+ .+.+|++|+|
T Consensus 167 ~Rv~~~l~~l~~~~~~~~~~vlvVsH 192 (263)
T 3c7t_A 167 KRGEVAMQAAVNDTEKDGGNVIFIGH 192 (263)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 344455555532 4678999999
No 269
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.19 E-value=70 Score=25.24 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=30.5
Q ss_pred HHHHHH--hcCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH----HhCCceEEEEec
Q psy858 23 STAMAL--IGDPPLVFLDEPTSGVDPI-------------SRHRLWAVLSQI----QKTGQSIVLTSH 71 (72)
Q Consensus 23 ~ia~~l--~~~p~~lllDEP~~gld~~-------------~~~~i~~~l~~~----~~~g~til~~~h 71 (72)
.+++.+ -.+|+++++|..++-.... ..+.+...++.+ ++.+++||+++|
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQ 518 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 518 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 444444 3579999999987755411 122344444444 345999999987
No 270
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=56.91 E-value=7 Score=24.44 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=22.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++|+||+- .+...+...+.+.+.+.. ....+|++++
T Consensus 82 ~~kvviIdead-~lt~~a~naLLk~LEep~-~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCE-RMTQQAANAFLKALEEPP-EYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCC-TTEEEEEEES
T ss_pred CceEEEeccHH-HhCHHHHHHHHHHHhCCC-CCeEEEEEEC
Confidence 35799999874 456666666666654421 2344555554
No 271
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.17 E-value=16 Score=24.46 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q psy858 22 LSTAMALIGDPPLVFLDEP 40 (72)
Q Consensus 22 ~~ia~~l~~~p~~lllDEP 40 (72)
-.+..+--..|.++++||-
T Consensus 288 ~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp HHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHhcCCcEEEecch
Confidence 3455566677889999995
No 272
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=55.66 E-value=17 Score=21.68 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHH----hCCceEEEEec
Q psy858 49 RHRLWAVLSQIQ----KTGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~----~~g~til~~~h 71 (72)
..++...+.++. ..+.+|++|||
T Consensus 164 ~~Rv~~~l~~l~~~~~~~~~~vlvVsH 190 (257)
T 3gp3_A 164 VARVLPLWNESIAPAVKAGKQVLIAAH 190 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 345556665542 35789999999
No 273
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=55.34 E-value=21 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHh----CCceEEEEecC
Q psy858 50 HRLWAVLSQIQK----TGQSIVLTSHR 72 (72)
Q Consensus 50 ~~i~~~l~~~~~----~g~til~~~h~ 72 (72)
+++...+.++.+ .+.+|++|+|.
T Consensus 177 ~R~~~~l~~l~~~~~~~~~~vlvVsHg 203 (273)
T 3d4i_A 177 ERCAVSMGQIINTCPQDMGITLIVSHS 203 (273)
T ss_dssp HHHHHHHHHHHTTSTTCCSEEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEech
Confidence 344455565542 36799999994
No 274
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=54.98 E-value=1.4 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.113 Sum_probs=20.1
Q ss_pred chhcCcCCCCChHHHHHHHHHHHHhcCCC
Q psy858 5 EYRHRESGRYSGGNKRKLSTAMALIGDPP 33 (72)
Q Consensus 5 ~~~~~~~~~lS~G~~qr~~ia~~l~~~p~ 33 (72)
+..++.++.+|||..++...+++++..++
T Consensus 65 ~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 65 ILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 45567788999999999999999998877
No 275
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=54.44 E-value=20 Score=18.26 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=22.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|-...+.|-. .+.+.+++. ..+..|+++|
T Consensus 45 ~~~dlii~d~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 81 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNGI---QVLETLRKR-QYSGIIIIVS 81 (134)
T ss_dssp HCCSEEEEETTCSSSCHH---HHHHHHHHT-TCCSEEEEEE
T ss_pred cCCCEEEEecCCCCCChH---HHHHHHHhc-CCCCeEEEEe
Confidence 579999999877776642 233334332 1245565554
No 276
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=54.42 E-value=17 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHH----hCCceEEEEec
Q psy858 49 RHRLWAVLSQIQ----KTGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~----~~g~til~~~h 71 (72)
.+++...+.++. ..+.+|++|||
T Consensus 182 ~~Rv~~~l~~l~~~~~~~~~~vlvVsH 208 (274)
T 4emb_A 182 VARVIPYWTDEIAKEVLEGKKVIVAAH 208 (274)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence 344555555542 35789999999
No 277
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=54.38 E-value=10 Score=25.90 Aligned_cols=42 Identities=17% Similarity=0.395 Sum_probs=28.1
Q ss_pred hcCCCEEEEeCCCCC----------C-CHH--------HHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSG----------V-DPI--------SRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~g----------l-d~~--------~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|... + ++. .++.+.+.+.++.+.|..++++.
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~ 294 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQ 294 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEES
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEc
Confidence 679999999988332 1 111 23345777777766788888875
No 278
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=54.32 E-value=28 Score=21.15 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=30.7
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 20 RKLSTAMALI---GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 20 qr~~ia~~l~---~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+|+++..||. .+-++++.|+- .++......+.+++..+--.+..++++.
T Consensus 105 rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~LiV~ 156 (225)
T 1dmg_A 105 KKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQLSDKKTLIVL 156 (225)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCCCCCEEEEE
Confidence 5777777764 44578888875 4555566777788877632213445543
No 279
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.31 E-value=30 Score=20.14 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=13.0
Q ss_pred HHHHHHhcCCCEEEEeCCCC
Q psy858 23 STAMALIGDPPLVFLDEPTS 42 (72)
Q Consensus 23 ~ia~~l~~~p~~lllDEP~~ 42 (72)
.+..+....|.++++||.-.
T Consensus 90 ~~~~a~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDA 109 (262)
T ss_dssp HHHHHHHTCSEEEEEECC--
T ss_pred HHHHHHhcCCeEEEEeCcch
Confidence 34445556789999999754
No 280
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=53.81 E-value=32 Score=22.41 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=27.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
-+++-|+-+..-|+..+..+.+++....+.|..|.+++.
T Consensus 316 tLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~ 354 (386)
T 2vgn_A 316 YLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLST 354 (386)
T ss_dssp EEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECT
T ss_pred EEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECC
Confidence 366667766656887777766666666667888888764
No 281
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=53.80 E-value=5.6 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHh----CCceEEEEecC
Q psy858 49 RHRLWAVLSQIQK----TGQSIVLTSHR 72 (72)
Q Consensus 49 ~~~i~~~l~~~~~----~g~til~~~h~ 72 (72)
..++...+.++.+ .+.+|++|+|.
T Consensus 167 ~~R~~~~l~~l~~~~~~~~~~vlvVsHg 194 (264)
T 3mbk_A 167 INRSFQVTKEIISECKSKGNNILIVAHA 194 (264)
T ss_dssp HHHHHHHHHHHHHHHTTSCSEEEEEECT
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEecH
Confidence 3445555555532 37899999994
No 282
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=53.70 E-value=8.3 Score=25.96 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=27.0
Q ss_pred hcCCCEEEEeCCCCC-------------CC------HHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSG-------------VD------PISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~g-------------ld------~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|... .+ ...++.+.+.+.++.+.|..++++.
T Consensus 185 i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~ 245 (500)
T 3aq1_B 185 VENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQ 245 (500)
T ss_dssp EEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEES
T ss_pred ccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEC
Confidence 578999999988321 11 1123335777877777788888875
No 283
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=53.40 E-value=35 Score=20.58 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 38 DEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 38 DEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
|+-..++|+...+.+.+.+.++.+.|.-+++++
T Consensus 23 ~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~ 55 (243)
T 3ek6_A 23 GDGDYGIDPKVINRLAHEVIEAQQAGAQVALVI 55 (243)
T ss_dssp TTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333457999999999999999888787766654
No 284
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=53.28 E-value=75 Score=25.60 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHh--cCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 23 STAMALI--GDPPLVFLDEPTSGVD----------------PISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 23 ~ia~~l~--~~p~~lllDEP~~gld----------------~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+.++.+. ..|+++++|+-..-.. ......+...|..++++ +++||+++|
T Consensus 800 ~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 800 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 3344443 4689999998332111 11223344455666665 899999987
No 285
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=53.18 E-value=21 Score=18.14 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=22.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++... .+..|+++|
T Consensus 45 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s 84 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDGY---ALCGHFRSEPTLKHIPVIFVS 84 (133)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHSTTTTTCCEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhCCccCCCCEEEEe
Confidence 4679999999877666632 23334443211 245555554
No 286
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=52.91 E-value=21 Score=18.01 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=21.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-.+|+++++|--..+.|- ..+.+.+++ ..+..++++|
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~--~~~~~ii~~t 80 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRK--KYDMPIIMLT 80 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHT--TCCSCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHh--cCCCCEEEEE
Confidence 467999999976666543 223333333 1245555554
No 287
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=52.82 E-value=23 Score=18.47 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|-...+.|-. .+.+.+++. ..+..||++|
T Consensus 47 ~~~~dlvllD~~lp~~~g~---~l~~~l~~~-~~~~~ii~ls 84 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDGI---ELVDNILKL-YPDCSVIFMS 84 (141)
T ss_dssp TSCCSEEEEESCCSSSCHH---HHHHHHHHH-CTTCEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhh-CCCCcEEEEe
Confidence 3569999999877776642 334444442 2355566554
No 288
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.56 E-value=24 Score=21.33 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=10.1
Q ss_pred cCCCEEEEeCCC
Q psy858 30 GDPPLVFLDEPT 41 (72)
Q Consensus 30 ~~p~~lllDEP~ 41 (72)
.+.+++++||..
T Consensus 102 ~~~kIiiLDEad 113 (212)
T 1tue_A 102 TDTKVAMLDDAT 113 (212)
T ss_dssp TTCSSEEEEEEC
T ss_pred CCCCEEEEECCC
Confidence 357899999987
No 289
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=52.11 E-value=3.8 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.9
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q psy858 37 LDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 37 lDEP~~gld~~~~~~i~~~l~~ 58 (72)
.=|||.|+|...-..|.++..+
T Consensus 189 ~lEPTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 189 WLEPTGGIDLENYSEILKIALD 210 (249)
T ss_dssp EEEEBSSCCTTTHHHHHHHHHH
T ss_pred eECCCCCccHhhHHHHHHHHHH
Confidence 3399999999999999888766
No 290
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=52.03 E-value=0.41 Score=29.94 Aligned_cols=25 Identities=0% Similarity=-0.354 Sum_probs=19.1
Q ss_pred CCcc-hhcCcCCCCChHHHHHHHHHH
Q psy858 2 GLTE-YRHRESGRYSGGNKRKLSTAM 26 (72)
Q Consensus 2 ~l~~-~~~~~~~~lS~G~~qr~~ia~ 26 (72)
++.+ ..++++..|||..+|++.+||
T Consensus 275 ~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 275 EISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp SSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4554 667788889998888888875
No 291
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=52.01 E-value=21 Score=17.77 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=21.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++++|--..+.|-. .+.+.+++.. .+..++++|
T Consensus 46 ~~~dlil~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s 82 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNGI---DAIKEIMKID-PNAKIIVCS 82 (120)
T ss_dssp HCCSEEEEECSCGGGCHH---HHHHHHHHHC-TTCCEEEEE
T ss_pred cCCCEEEEeCCCCCCcHH---HHHHHHHhhC-CCCeEEEEe
Confidence 479999999876665532 3334444322 244555544
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=51.95 E-value=0.039 Score=33.81 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=22.3
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEP 40 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP 40 (72)
....+|||++|++.+++++.++|++ +|++
T Consensus 166 ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 166 LLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 3456788888888888888888876 5654
No 293
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=51.84 E-value=23 Score=22.55 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEe
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTS 70 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~ 70 (72)
+++...+++..|+++++=|- ..|. +.+.+.+++..++ +.++++++
T Consensus 175 ~lA~~a~la~ga~~iliPE~--~~~~---~~~~~~i~~~~~~g~~~~iivva 221 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPEA--DYDM---HEIIARLKRGHERGKKHSIIIVA 221 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTTB--CCCH---HHHHHHHHHHHTTTCCCEEEEEE
T ss_pred HHHHHHHhccCCCEEEecCC--CCCH---HHHHHHHHHHHHcCCCceEEEEE
Confidence 67889999999999888552 2333 3455555554433 56677664
No 294
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=51.70 E-value=32 Score=19.76 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=22.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++|= |.+....+.+.+.+++........|++||
T Consensus 51 ~~iliD~---G~~~~~~~~~~~~l~~~~~~~i~~ii~TH 86 (227)
T 1mqo_A 51 GLVLVDS---SWDDKLTKELIEMVEKKFQKRVTDVIITH 86 (227)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHHTSCEEEEECCC
T ss_pred eEEEEEC---CCChHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 4566773 44554455666666654234677899998
No 295
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=51.48 E-value=15 Score=24.83 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=28.4
Q ss_pred hcCCCEEEEeCCCCCC-----------CH--------HHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGV-----------DP--------ISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gl-----------d~--------~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|...- |+ ..++.+.+.+.++.+.|..++++.
T Consensus 223 ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~ 283 (529)
T 3iyg_A 223 IVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTT 283 (529)
T ss_pred cCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 4689999999886421 11 223346677777777788888875
No 296
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=51.38 E-value=25 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=15.8
Q ss_pred HHHHHHHHHHH-HH---hCCceEEEEec
Q psy858 48 SRHRLWAVLSQ-IQ---KTGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~-~~---~~g~til~~~h 71 (72)
..+++...+.+ +. ..+.+|++|||
T Consensus 156 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsH 183 (249)
T 1e58_A 156 TIDRVIPYWNETILPRMKSGERVIIAAH 183 (249)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcC
Confidence 34556666655 33 25779999999
No 297
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=51.28 E-value=4 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHH
Q psy858 38 DEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 38 DEP~~gld~~~~~~i~~~l~~ 58 (72)
=|||.|+|...-..|.++..+
T Consensus 213 lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 213 LEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp EEEBSSCCTTTHHHHHHHHHH
T ss_pred ECCCCCccHhHHHHHHHHHHH
Confidence 399999999999998888765
No 298
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=51.06 E-value=23 Score=19.66 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=22.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|-...+.| . . +...++... ....||++|
T Consensus 50 ~~~~dlvl~D~~mp~~~--g-~-l~~~~~~~~-~~~~ii~lt 86 (196)
T 1qo0_D 50 DVPVDVVFTSIFQNRHH--D-E-IAALLAAGT-PRTTLVALV 86 (196)
T ss_dssp SSCCSEEEEECCSSTHH--H-H-HHHHHHHSC-TTCEEEEEE
T ss_pred CCCCCEEEEeCCCCccc--h-H-HHHHHhccC-CCCCEEEEE
Confidence 35799999998776655 2 1 444444321 355666554
No 299
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=51.06 E-value=26 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=15.2
Q ss_pred HHHHHHHHHHH-HH---hCCceEEEEec
Q psy858 48 SRHRLWAVLSQ-IQ---KTGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~-~~---~~g~til~~~h 71 (72)
..+++...+.+ +. ..+.+|++|||
T Consensus 154 ~~~R~~~~l~~~i~~~~~~~~~vlvVsH 181 (240)
T 1qhf_A 154 VIDRLLPYWQDVIAKDLLSGKTVMIAAH 181 (240)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 34455555555 32 24778999999
No 300
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=50.93 E-value=22 Score=21.36 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=8.0
Q ss_pred CceEEEEec
Q psy858 63 GQSIVLTSH 71 (72)
Q Consensus 63 g~til~~~h 71 (72)
+..|++|||
T Consensus 175 ~~~vlvVsH 183 (265)
T 3e9c_A 175 PVHALMVSH 183 (265)
T ss_dssp CCEEEEEEC
T ss_pred CCeEEEEeC
Confidence 578999999
No 301
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=50.90 E-value=23 Score=20.43 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHh----CCceEEEEec
Q psy858 49 RHRLWAVLSQIQK----TGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~~----~g~til~~~h 71 (72)
..++...+.++.+ .+.+|++|+|
T Consensus 137 ~~R~~~~l~~l~~~~~~~~~~vlvVsH 163 (211)
T 1fzt_A 137 AERVLPYYKSTIVPHILKGEKVLIAAH 163 (211)
T ss_dssp HHHHHHHHHHHHTTHHHHTCCEEEESC
T ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEeC
Confidence 3456666666532 3678999999
No 302
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=50.13 E-value=13 Score=24.86 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.0
Q ss_pred cCCCEEEEeCCCCCCC
Q psy858 30 GDPPLVFLDEPTSGVD 45 (72)
Q Consensus 30 ~~p~~lllDEP~~gld 45 (72)
...+++++|=|.+|..
T Consensus 174 ~~FD~Il~DaPCSg~G 189 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEG 189 (456)
T ss_dssp TCEEEEEEECCCCCGG
T ss_pred ccCCEEEECCCCCCcc
Confidence 4568999999988764
No 303
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=50.11 E-value=26 Score=18.13 Aligned_cols=38 Identities=5% Similarity=0.052 Sum_probs=21.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|--..+.|-. .+...+++.. ....+|++|
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~-~~~~ii~~s 79 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRERW-PETVRIIIT 79 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHHHC-TTSEEEEEE
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCcEEEEe
Confidence 3579999999877776642 2333444321 244455443
No 304
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=49.75 E-value=28 Score=18.46 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=23.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 35 VFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 35 lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+.||--.+-|++.+...+..+...+... +..|.+..|
T Consensus 16 v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~i~I~Gh 53 (123)
T 3td3_A 16 VFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGH 53 (123)
T ss_dssp EECCTTCCCCCGGGHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred EEeCCCChhcCHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 5556666677777777766666555543 455666666
No 305
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=49.49 E-value=40 Score=20.21 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 41 TSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 41 ~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..++|+...+.+.+.+..+.+.|.-+++++
T Consensus 24 ~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~ 53 (240)
T 4a7w_A 24 QFGIDIHVLDHIAKEIKSLVENDIEVGIVI 53 (240)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 347999999999999999887787766654
No 306
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=49.45 E-value=75 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=16.6
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCC
Q psy858 20 RKLSTAMALI--GDPPLVFLDEPTSGV 44 (72)
Q Consensus 20 qr~~ia~~l~--~~p~~lllDEP~~gl 44 (72)
+-+.+++.++ ..|+++++||-.+-+
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 4445555553 679999999964443
No 307
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=49.40 E-value=43 Score=20.46 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 39 EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 39 EP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++...+|....+.+.+++....+.|..||+.-|.
T Consensus 61 ~~~~~~~~~~l~~~~~~v~~~~~~gi~vild~h~ 94 (305)
T 1h1n_A 61 SMTGSPDPNYLADLIATVNAITQKGAYAVVDPHN 94 (305)
T ss_dssp STTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 4456788988888999988887889999998874
No 308
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=49.25 E-value=2.5 Score=23.23 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=19.7
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhC-CceEEEEe
Q psy858 31 DPPLVFLDEPTSGV----DPISRHRLWAVLSQIQKT-GQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~gl----d~~~~~~i~~~l~~~~~~-g~til~~~ 70 (72)
.|.++++||--.-. +......+.+.+..+.++ +..+|.++
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 159 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGAT 159 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEE
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEec
Confidence 57799999942211 011112344445444444 45555554
No 309
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=48.95 E-value=30 Score=18.65 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCceEEEEec
Q psy858 52 LWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 52 i~~~l~~~~~~g~til~~~h 71 (72)
...++.++.+.+..++++.|
T Consensus 97 ~~~~~~~~~~~~~p~ilv~n 116 (165)
T 2wji_A 97 NLYLTLQLMEMGANLLLALN 116 (165)
T ss_dssp HHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHHhcCCCEEEEEE
Confidence 34455555555778888766
No 310
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=48.93 E-value=31 Score=18.80 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=35.6
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 28 l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+..-+.-+.||-=.+.|++..+..+..+...+... +..|.+..|
T Consensus 25 ~~~~~~~i~F~~~sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~Gh 69 (134)
T 2aiz_P 25 LQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGN 69 (134)
T ss_dssp HTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred hhcCcceEEecCCCceeCHHHHHHHHHHHHHHHHCCCceEEEEEE
Confidence 66677888898888899999999888888777654 567888877
No 311
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=48.88 E-value=29 Score=23.75 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCCEEEEeCCCCC----------C-CH--------HHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTSG----------V-DP--------ISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~g----------l-d~--------~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+|+++++|-|... + ++ ..++.+.+.+.++.+.|..++++.
T Consensus 244 n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~ 302 (568)
T 3p9d_H 244 KHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAG 302 (568)
T ss_dssp SCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 9999999988421 1 11 123445567777777788888875
No 312
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=48.68 E-value=25 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=15.8
Q ss_pred HHHHHHHHHHH-HH---hCCceEEEEec
Q psy858 48 SRHRLWAVLSQ-IQ---KTGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~-~~---~~g~til~~~h 71 (72)
..+++...+.+ +. ..+.+|++|+|
T Consensus 161 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsH 188 (267)
T 2hhj_A 161 VLERLLPYWNERIAPEVLRGKTILISAH 188 (267)
T ss_dssp HHHHHHHHHHHHTHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcC
Confidence 34556666665 43 25789999999
No 313
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=48.53 E-value=24 Score=17.41 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=22.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|-...+.|-. .+.+.+++.. .+..++++|
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s 80 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKK-KDAKIILLT 80 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHC-TTCCEEEEE
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccC-CCCeEEEEE
Confidence 3579999999877666642 3344444422 244455443
No 314
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=48.18 E-value=26 Score=17.73 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=9.7
Q ss_pred hcCCCEEEEeCCCCCCC
Q psy858 29 IGDPPLVFLDEPTSGVD 45 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld 45 (72)
-.+|+++|+|-...+.|
T Consensus 49 ~~~~dlvi~d~~l~~~~ 65 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMN 65 (130)
T ss_dssp TCCCSEEEECCC-----
T ss_pred cCCCCEEEEecCCCCCC
Confidence 45689999997655433
No 315
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=48.05 E-value=6.1 Score=23.95 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=8.7
Q ss_pred CCceEEEEec
Q psy858 62 TGQSIVLTSH 71 (72)
Q Consensus 62 ~g~til~~~h 71 (72)
.+.+|++|||
T Consensus 197 ~~~~vlvVsH 206 (268)
T 4eo9_A 197 TGRTVLIVAH 206 (268)
T ss_dssp TTCCEEEEEC
T ss_pred CCCEEEEEeC
Confidence 5789999999
No 316
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=47.86 E-value=35 Score=23.01 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=27.3
Q ss_pred hcCCCEEEEeCCCCCC------------CHH--------HHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGV------------DPI--------SRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gl------------d~~--------~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|...- ++. .++.+.+.+.++.+.|..++++.
T Consensus 219 ~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~ 280 (513)
T 3iyg_B 219 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINR 280 (513)
T ss_pred ecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 6799999999765321 111 22334456777777788888875
No 317
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=47.85 E-value=6.2 Score=23.59 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHH----hCCceEEEEec
Q psy858 48 SRHRLWAVLSQIQ----KTGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~~~----~~g~til~~~h 71 (72)
...++...+.++. ..+.+|++|||
T Consensus 165 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsH 192 (258)
T 3kkk_A 165 TVERVLPFWFDHIAPDILANKKVMVAAH 192 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhhhccCCCEEEEEcC
Confidence 3445666665532 35789999999
No 318
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=47.64 E-value=18 Score=23.08 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=12.9
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy858 30 GDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~ 46 (72)
...+++++|-|..+.+.
T Consensus 278 ~~fD~Ii~dpP~~~~~~ 294 (382)
T 1wxx_A 278 ERFDLVVLDPPAFAKGK 294 (382)
T ss_dssp CCEEEEEECCCCSCCST
T ss_pred CCeeEEEECCCCCCCCh
Confidence 35689999999877653
No 319
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=47.63 E-value=30 Score=18.17 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=21.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++. .....||++|
T Consensus 60 ~~~dlii~d~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 96 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDGA---QVAAAVRSY-ELPTRVLLIS 96 (152)
T ss_dssp HCCSEEEEETTCSSSCHH---HHHHHHHHT-TCSCEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhc-CCCCeEEEEE
Confidence 579999999877666632 233333332 1244555554
No 320
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=47.59 E-value=41 Score=22.33 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHHHHHh-----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEe
Q psy858 21 KLSTAMALI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTS 70 (72)
Q Consensus 21 r~~ia~~l~-----~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~ 70 (72)
++++..+++ ..|+++++=|-.- |. +.+.+.+++.. +.+.+||+++
T Consensus 196 ~lAl~aglA~~~~~~gad~ilIPE~~f--~~---~~~~~~i~~~~~~~~~~iIvVa 246 (419)
T 3hno_A 196 WIAAAGGLASSPEREIPVVILFPEISF--DK---QKFLAKVDSCVKKFGYCSVVVS 246 (419)
T ss_dssp HHHHGGGGGCCSSSCCCEEEECTTSCC--CH---HHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHhcccCCCCceEEEeCCCCC--CH---HHHHHHHHHHHHhCCCEEEEEe
Confidence 678888899 5799888755322 33 34444444432 2356777664
No 321
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=47.57 E-value=5.2 Score=27.36 Aligned_cols=38 Identities=11% Similarity=0.389 Sum_probs=21.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+|+++++|.+.+..+. +..++.++.+.|..++++..
T Consensus 215 ~en~~Ill~d~~I~~~~~-----l~~~le~i~~~g~~lvIi~~ 252 (545)
T 1iok_A 215 LEDAYILLHEKKLSSLQP-----MVPLLESVIQSQKPLLIVAE 252 (545)
T ss_dssp EEEEEEEECSSCBCCCCC----------------CCCCEEEES
T ss_pred ecCCeEEEEcCCcCCHHH-----HHHHHHHHHhcCCCEEEECC
Confidence 568999999998877654 45667666667888888753
No 322
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.44 E-value=28 Score=17.76 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=21.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++++|-...+.|-. .+...+++.. ....++++|
T Consensus 46 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s 82 (136)
T 1mvo_A 46 EKPDLIVLDVMLPKLDGI---EVCKQLRQQK-LMFPILMLT 82 (136)
T ss_dssp HCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEE
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHcCC-CCCCEEEEE
Confidence 579999999877776642 2344444321 244455544
No 323
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=47.29 E-value=38 Score=21.85 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 40 PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 40 P~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+..++|......+.+.+..+.+.|.-+++++.
T Consensus 19 ~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~g 50 (367)
T 2j5v_A 19 GSRRLNRAHIVELVRQCAQLHAAGHRIVIVTS 50 (367)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 45689999999999999998877877777653
No 324
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=47.24 E-value=18 Score=20.66 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 32 p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
-..+++|=. .+....+.+.+.+..........|++||
T Consensus 40 ~~~iLiD~G---~~~~~~~~~~~~l~~~~~~~i~~ii~TH 76 (219)
T 3l6n_A 40 KGVVLFDVP---WEKVQYQSLMDTIKKRHNLPVVAVFATH 76 (219)
T ss_dssp TEEEEESCC---SSGGGHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CEEEEEeCC---CChHHHHHHHHHHHHhcCCceeEEEecC
Confidence 346677743 3343445566666553334677899998
No 325
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=46.98 E-value=29 Score=19.78 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHh-------CCceEEEEec
Q psy858 48 SRHRLWAVLSQIQK-------TGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~~~~-------~g~til~~~h 71 (72)
..+++.+.+.++.+ .+.+|++|||
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsH 143 (202)
T 3mxo_A 113 DGARIEAAFRNYIHRADARQEEDSYEIFICH 143 (202)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCSCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhhhccCCCceEEEEeC
Confidence 34556666666643 2568999999
No 326
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=46.93 E-value=46 Score=20.17 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=32.9
Q ss_pred HHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhC-CceEEE
Q psy858 25 AMALIGDPPLVFLDEPTSG-------VDPISRHRLWAVLSQIQKT-GQSIVL 68 (72)
Q Consensus 25 a~~l~~~p~~lllDEP~~g-------ld~~~~~~i~~~l~~~~~~-g~til~ 68 (72)
..++-.+.+++.+-|+... ++......+...++++.+. |..+|+
T Consensus 50 ~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liI 101 (243)
T 3o63_A 50 EAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAV 101 (243)
T ss_dssp HHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 3566778899999999854 8888887777777777653 666655
No 327
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=46.90 E-value=34 Score=23.28 Aligned_cols=46 Identities=7% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEe
Q psy858 20 RKLSTAMALIGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 20 qr~~ia~~l~~~-p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~ 70 (72)
=.+++..+++.. ++++++=|- ..|.. .+.+.+++-.+ .+.+||+++
T Consensus 277 G~LAl~agLA~g~ad~ilIPE~--p~~l~---~i~~~i~~r~~~k~~~IIvVa 324 (487)
T 2hig_A 277 GFIAAQAAVASAQANICLVPEN--PISEQ---EVMSLLERRFCHSRSCVIIVA 324 (487)
T ss_dssp CHHHHHHHHHHTCCSEEECTTS--CCCHH---HHHHHHHHHTTSCSEEEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEeCCC--CCCHH---HHHHHHHHHHhcCCcEEEEEe
Confidence 368899999998 999888553 23333 45555554332 466777765
No 328
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=46.87 E-value=25 Score=20.39 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHh-CCceEEEEec
Q psy858 48 SRHRLWAVLSQIQK-TGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~~~~-~g~til~~~h 71 (72)
..+++...+.++.+ ...+|++|||
T Consensus 125 ~~~R~~~~l~~l~~~~~~~vlvVsH 149 (213)
T 3hjg_A 125 FSQRVSRAWSQIINDINDNLLIVTH 149 (213)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 34456666666543 2478999999
No 329
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=46.87 E-value=26 Score=19.86 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=28.4
Q ss_pred cCCCEEEEeCCCCCCC-------------------HHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVD-------------------PISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld-------------------~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+|+++++|-|...-- ...++.+.+.+.++.+.|..|+++.
T Consensus 20 ~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~ 79 (159)
T 1ass_A 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQ 79 (159)
T ss_dssp EEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEEC
Confidence 6899999997755321 2233446777777777788888874
No 330
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.53 E-value=61 Score=21.43 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---h-CCceEEEEec
Q psy858 21 KLSTAMALIGDPPLVFLDEP----------TSGVDPISRHRLWAVLSQIQ---K-TGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP----------~~gld~~~~~~i~~~l~~~~---~-~g~til~~~h 71 (72)
|-.+..|-...|.++++||- ..+-+....+.+..++..+- . .+.-||.+|+
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 33455566778999999985 22345455555555555543 2 2556666665
No 331
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=46.06 E-value=28 Score=17.45 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|--..+.|-. .+...+++. .....++++|
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 82 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKVI-DENIRVIIMT 82 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHHH-CTTCEEEEEE
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHHh-CCCCCEEEEE
Confidence 3579999999877666642 233344432 2345566554
No 332
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=46.02 E-value=60 Score=21.22 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++++|-|-.|++....+.+ ..+ +.+ .+++++.
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~~l----~~l-~p~-givyvsc 387 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVKRL----NRE-KPG-VIVYVSC 387 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHHHH----HHH-CCS-EEEEEES
T ss_pred CCCEEEEcCCccchHHHHHHHH----Hhc-CCC-cEEEEEC
Confidence 5799999999999986544443 333 233 4666654
No 333
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=45.98 E-value=27 Score=22.82 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 18 NKRKLSTAMALIGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 18 ~~qr~~ia~~l~~~p~~lllDEP-~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+....+...+.+++++|+..+ ..++.... ..+.+.+ .+.+..++++.+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~N 139 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVN 139 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEE
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEE
Confidence 66666777777888887666543 34565554 3344444 335777777653
No 334
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=45.88 E-value=13 Score=25.44 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=28.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-+.+..+. +..++.+..+.|..++++.
T Consensus 213 len~kIll~d~kIs~~~~-----l~~~le~I~~~g~~lvIi~ 249 (546)
T 3rtk_A 213 LEDPYILLVSSKVSTVKD-----LLPLLEKVIGAGKPLLIIA 249 (546)
T ss_dssp EESCEEEEBSSEECCSTT-----THHHHHHHHTTTCCEEEEE
T ss_pred ecccEEEEECCccCCHHH-----HHHHHHHHHhcCCCEEEEc
Confidence 578999999987666543 5667777777788888775
No 335
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=45.64 E-value=31 Score=17.79 Aligned_cols=38 Identities=8% Similarity=0.187 Sum_probs=22.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|
T Consensus 47 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls 84 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGM---DILREIKKIT-PHMAVIILT 84 (143)
T ss_dssp TTTCCEEEEESCCSSSCHH---HHHHHHHHHC-TTCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCeEEEEE
Confidence 3579999999877766643 2333444422 345555554
No 336
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=45.63 E-value=33 Score=18.05 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=22.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|-...+.|-. .+...+++.. ....||++|
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls 86 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSY-PDIERVVIS 86 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHC-TTSEEEEEE
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCcEEEEe
Confidence 3569999999877776643 3344444321 355666554
No 337
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=45.61 E-value=35 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=25.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+++.|+-...-|+ .+..+.+++....+.|..|.++|.
T Consensus 304 tLLV~d~l~r~~d~-~r~~~~~l~e~v~~~Gg~V~ivs~ 341 (364)
T 3obw_A 304 TVLVIEDLLSSDEQ-ERLTIERMLEDIENKRGEVILVPK 341 (364)
T ss_dssp EEEEEGGGGSSCHH-HHHHHHHHHHHHHTTTCEEEEECT
T ss_pred EEEEeccCcccccc-hHHHHHHHHHHHHhcCCEEEEECC
Confidence 47777887776676 555566666555556888887764
No 338
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=45.45 E-value=36 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhC--C-ceEEEEec
Q psy858 49 RHRLWAVLSQIQKT--G-QSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~~~--g-~til~~~h 71 (72)
.+++...+.++.++ + .+|++|+|
T Consensus 138 ~~Rv~~~l~~l~~~~~~~~~vlvVsH 163 (219)
T 2qni_A 138 QARIVEAVKAVLDRHDARQPIAFVGH 163 (219)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34556666666543 2 58999999
No 339
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=45.35 E-value=83 Score=22.67 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEe
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTS 70 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~ 70 (72)
.+++..+++..|+++++=|-.-.++. ..+.+.+.+++..+. +.+||+++
T Consensus 203 ~LAl~aglA~gAd~ilIPE~p~~~~~-~~~~v~~~i~~~~~~gk~~~IVvVa 253 (766)
T 3o8o_B 203 WLALLAGIATSADYIFIPEKPATSSE-WQDQMCDIVSKHRSRGKRTTIVVVA 253 (766)
T ss_dssp HHHHHHHHHHTCSEEECTTCCCCTTH-HHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEccCCCCChHH-HHHHHHHHHHHHHhcCCCceEEEEe
Confidence 68889999999999888664444543 345566677665433 45676664
No 340
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=45.26 E-value=35 Score=20.51 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=15.6
Q ss_pred HHHHHHHHHHH-HH---hCCceEEEEec
Q psy858 48 SRHRLWAVLSQ-IQ---KTGQSIVLTSH 71 (72)
Q Consensus 48 ~~~~i~~~l~~-~~---~~g~til~~~h 71 (72)
..+++...+.+ +. ..+.+|++|||
T Consensus 174 ~~~Rv~~~l~~~i~~~~~~~~~vlvVsH 201 (267)
T 3d8h_A 174 TVERVKPYFEDVIAPSIMSGKSVLVSAH 201 (267)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEEeC
Confidence 34555666655 32 25779999999
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=45.19 E-value=0.039 Score=33.22 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=28.8
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHH
Q psy858 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTS------------GVDPISRHRLWA 54 (72)
Q Consensus 10 ~~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~------------gld~~~~~~i~~ 54 (72)
....+|||++|++.++++..++|++ +|++.. --|...+..++.
T Consensus 142 ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 142 LLVEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHH
Confidence 3456788888888888888888876 676532 235566666554
No 342
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=45.17 E-value=33 Score=17.98 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=22.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++. ..+..||++|
T Consensus 64 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~ls 101 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTGL---EVLEWIRSE-KLETKVVVVT 101 (150)
T ss_dssp TSCCSEEEECSSCSSSCHH---HHHHHHHHT-TCSCEEEEEE
T ss_pred ccCCCEEEEeCCCCCCcHH---HHHHHHHHh-CCCCeEEEEe
Confidence 4679999999877666532 233334332 1245555554
No 343
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=45.13 E-value=38 Score=18.65 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 18 ~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.|+-.+ +..+.+..+++-|+- +|.+ ..+..+..++..+.+...-+|++.
T Consensus 21 ~~Q~~~l-~~~~~g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~~~g~id~vvv~ 70 (143)
T 3ilx_A 21 ANQVKYL-EEQVKEYDLVITDIG-SGLN-MKRKGFLKLLRMILNNEVSRVITA 70 (143)
T ss_dssp HHHHHHH-HHHCSCCSEEEEEES-CTTC-TTCHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHH-HHHhCCCeEEEEcCc-cccc-CCcHHHHHHHHHHHhCCCCEEEEE
Confidence 3444444 334446677666665 8877 566777777776544333455554
No 344
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=44.95 E-value=34 Score=20.05 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=26.6
Q ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHHHHHHHhC--CceEEEEe
Q psy858 31 DPPLVFLDEP----TSGVDPISRHRLWAVLSQIQKT--GQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP----~~gld~~~~~~i~~~l~~~~~~--g~til~~~ 70 (72)
+|++++-||- ..-+|+.-.+.+..+-..+... |..+.+++
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~S 108 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTE 108 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 7899999999 4456777777666655444331 55666654
No 345
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=44.87 E-value=9.1 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=27.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-+.+..+. +..++.++.+.|..++++.
T Consensus 214 lenp~Ill~d~~Is~~~~-----l~~~le~i~~~g~~lvIi~ 250 (547)
T 1kp8_A 214 LESPFILLADKKISNIRE-----MLPVLEAVAKAGKPLLIIA 250 (547)
T ss_dssp EESCEEECEESEECCGGG-----THHHHHHHHGGGCCEEEEE
T ss_pred ecCceEEEEcCcCCCHHH-----HHHHHHHHHhcCCCEEEEC
Confidence 478999999998765443 5677777777788888875
No 346
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=44.70 E-value=30 Score=17.42 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=21.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|--..+.|-. .+.+.+++. ..+..++++|
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 82 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGV---ELLRNLGDL-KINIPSIVIT 82 (126)
T ss_dssp GCCSEEEEEECCSTTSCHH---HHHHHHHHT-TCCCCEEEEE
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHhc-CCCCCEEEEE
Confidence 3568999999766666642 233344432 1344555554
No 347
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=44.59 E-value=15 Score=23.31 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=25.2
Q ss_pred cCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q psy858 30 GDPPLVFLDEP------TSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP------~~gld~~~~~~i~~~l~~~~~-~g~til~~~h~ 72 (72)
....++|+|.| |.|++...- -.++|..+++ .+.+|+.+++|
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~~L--~~~~I~~L~k~~~~lvvt~saD 195 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCSEL--NNKFITPLLRQCKVLIIVSNSD 195 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHHHH--HHHTHHHHHHTCSEEEEEEECG
T ss_pred CCCeEEEEcChHHHHHhccCCCHHHH--HHHHHHHHHHhcceEEEEeccC
Confidence 34679999999 445666553 0444555544 36677766653
No 348
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=44.53 E-value=18 Score=24.47 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred HhcCCCEEEEeCCCCC----------C-CHH--------HHHHHHHHHHHHHhCCceEEEEe
Q psy858 28 LIGDPPLVFLDEPTSG----------V-DPI--------SRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 28 l~~~p~~lllDEP~~g----------l-d~~--------~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-+.+|+++++|-|... + ++. .++.+.+.+.++.+.|..++++.
T Consensus 222 ~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~ 283 (515)
T 3iyg_H 222 KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSK 283 (515)
T ss_pred cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 4679999999987432 1 112 22345777777777788888764
No 349
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=44.49 E-value=50 Score=19.88 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCceEEEEecC
Q psy858 24 TAMALIGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQK--TGQSIVLTSHR 72 (72)
Q Consensus 24 ia~~l~~~-p~~lllDEP~~gld~~~~~~i~~~l~~~~~--~g~til~~~h~ 72 (72)
++..|... -.++.+|-|..|-.....+.+.+.+.++.+ ....++++.|.
T Consensus 31 ~~~~L~~~G~~v~~~d~~g~g~s~~~~~~~~~~i~~~~~~~~~~~v~lvGhS 82 (285)
T 1ex9_A 31 IPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHS 82 (285)
T ss_dssp HHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHHHHHHHCCSCEEEEEET
T ss_pred HHHHHHhCCCEEEEEeCCCCCCchhhHHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 44555544 789999999988887777777777766543 23578888884
No 350
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=44.09 E-value=44 Score=19.69 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=20.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
+..++++||.- .+++..+..+...+.+
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~ 126 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEY 126 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHH
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHh
Confidence 46799999964 5667777777777754
No 351
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.98 E-value=38 Score=20.93 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=24.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+++++++||.- .+....+..+...+.+.. ....+++++
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~-~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEE
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhcCC-CCeEEEEEe
Confidence 357899999974 455667777777776542 234455544
No 352
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=43.81 E-value=33 Score=17.64 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=20.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|- ..+. ....+...+++.. .+..||+++
T Consensus 46 ~~~~dlvi~d~-~~~~---~g~~~~~~l~~~~-~~~pii~ls 82 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGE---ESLNLIRRIREEF-PDTKVAVLS 82 (142)
T ss_dssp TSCCSEEEEEC-TTTH---HHHHHHHHHHHHC-TTCEEEEEE
T ss_pred ccCCCEEEEeC-CCCC---cHHHHHHHHHHHC-CCCCEEEEE
Confidence 35799999997 5442 2233444444422 245566554
No 353
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=43.65 E-value=33 Score=17.55 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=21.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++. ..+..|+++|
T Consensus 48 ~~~dlvilD~~lp~~~g~---~~~~~l~~~-~~~~~ii~ls 84 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTGL---EVLAEIRKK-HLNIKVIIVT 84 (133)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHT-TCSCEEEEEE
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHHH-CCCCcEEEEe
Confidence 579999999766666632 233344432 2345666654
No 354
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=43.60 E-value=29 Score=21.94 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCceEEEEec
Q psy858 52 LWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 52 i~~~l~~~~~~g~til~~~h 71 (72)
+.+.+.++...+.++++++|
T Consensus 276 ~~~~~~~~~~~~~~vlvV~H 295 (364)
T 3fjy_A 276 FREQITQTLNSRETTAICMH 295 (364)
T ss_dssp HHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHhcCCCeEEEEeC
Confidence 34445444445789999999
No 355
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=43.56 E-value=36 Score=17.91 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=21.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.+.. .+.+.+++.. .+..||++|
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~~-~~~pii~ls 82 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILALD-PDLPMILVT 82 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHHC-TTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhC-CCCCEEEEE
Confidence 468999999877766643 3344444422 245555554
No 356
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=43.51 E-value=34 Score=17.67 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=13.3
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy858 29 IGDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~ 46 (72)
-..|+++++|--..+.|-
T Consensus 46 ~~~~dlvllD~~l~~~~g 63 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDG 63 (136)
T ss_dssp HCCCSEEEEESEETTEEH
T ss_pred hcCCCEEEEeCCCCCCCH
Confidence 357999999976655553
No 357
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=43.45 E-value=4.2 Score=27.22 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=27.3
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecC
Q psy858 26 MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHR 72 (72)
Q Consensus 26 ~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h~ 72 (72)
+||..+ +++|+ ||++.+||. +..+.. ++.++ +.++.+++|+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~---eLt~~~~~~iP~vsa~ 69 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTS---ALTRKITLKTPLISSP 69 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCE---ESSSSCEESSCEEECC
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEe---eccCCeeEeceEEEEe
Confidence 788888 99999 999999994 333322 22222 5566666663
No 358
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=43.39 E-value=36 Score=17.86 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=22.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||+++
T Consensus 49 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls 86 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGGI---EATRHIRQWD-GAARILIFT 86 (153)
T ss_dssp TTCCSEEEECSCCSSSCHH---HHHHHHHHHC-TTCCEEEEE
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCeEEEEE
Confidence 4569999999877766632 3444444432 244555554
No 359
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=43.25 E-value=41 Score=19.40 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=21.4
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++|=. ........+.+.+++........|++||
T Consensus 47 ~~iLiD~G---~~~~~~~~~~~~l~~~~~~~i~~ii~TH 82 (232)
T 1a7t_A 47 QAALLDTP---INDAQTEMLVNWVTDSLHAKVTTFIPNH 82 (232)
T ss_dssp EEEEESCC---SSHHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred EEEEEeCC---CCHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 46667743 3344555666666654223467889988
No 360
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=43.20 E-value=39 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=14.8
Q ss_pred HHHHHHHHHH-HH---hCCceEEEEec
Q psy858 49 RHRLWAVLSQ-IQ---KTGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~-~~---~~g~til~~~h 71 (72)
..++...+.+ +. ..+.+|++|+|
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsH 183 (265)
T 1rii_A 157 VARFLPYFTDVIVGDLRVGKTVLIVAH 183 (265)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 4445555554 32 35789999999
No 361
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=43.16 E-value=33 Score=22.04 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=26.3
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+++.|+....-|+..+..+.+++....+.|..|.+++.
T Consensus 291 tLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~ 329 (358)
T 3agj_B 291 TVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPG 329 (358)
T ss_dssp EEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECC
Confidence 466667765544777666676666666567888888764
No 362
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=42.63 E-value=32 Score=17.11 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=22.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|--..+.|-. .+.+.+++ .....++++|
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~--~~~~~ii~~s 80 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE--RSTVGIILVT 80 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT--TCCCEEEEEE
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh--cCCCCEEEEE
Confidence 3579999999877666642 23333433 2345566554
No 363
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.62 E-value=76 Score=21.43 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---h-CCceEEEEec
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSG----------VDPISRHRLWAVLSQIQ---K-TGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~g----------ld~~~~~~i~~~l~~~~---~-~g~til~~~h 71 (72)
|-.+..|-...|.++++||--+- -+......+..+|.++- . .+.-||.+|+
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 55666777788999999996432 23344555556665552 1 2445555554
No 364
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=42.59 E-value=35 Score=17.53 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.6
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy858 30 GDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~ 46 (72)
..|+++|+|--..+.|-
T Consensus 61 ~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCcEEEEECCCCCCCH
Confidence 57999999987777664
No 365
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.33 E-value=75 Score=21.27 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-CCceEEEEec
Q psy858 21 KLSTAMALIGDPPLVFLDEPTS----------GVDPISRHRLWAVLSQIQ---K-TGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~----------gld~~~~~~i~~~l~~~~---~-~g~til~~~h 71 (72)
|-.+..|-...|.++++||--+ +-+....+.+..++..+- . .+.-||.+|+
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 4556666677899999999532 223444555566665542 1 2445666664
No 366
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=42.30 E-value=92 Score=23.26 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC--ceEEEEe
Q psy858 20 RKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG--QSIVLTS 70 (72)
Q Consensus 20 qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g--~til~~~ 70 (72)
=.+++..+++..|+++++=|-.-.++.+ ...+.+.+++..+.| .+||+++
T Consensus 408 G~LAl~agLA~GAd~IlIPE~pf~l~~~-~~~l~~~i~k~~~~Gk~~~IVVVA 459 (989)
T 3opy_A 408 GWLGLMSGIATGADYIFIPERPPSESNW-KDDLKKVCLRHREKGRRKTTVIVA 459 (989)
T ss_dssp THHHHHHHHHHTCSEEECTTSCCCTTTH-HHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred hHHHHHHHHhcCCCEEEeCCCCCChHHH-HHHHHHHHHHHHhcCCCceEEEEe
Confidence 3688999999999988886644444332 344666666654443 5666664
No 367
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=42.30 E-value=35 Score=17.48 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~-~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++. ...+..||++|
T Consensus 48 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDGV---SLIRALRRDSRTRDLAIVVVS 87 (140)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHTSGGGTTCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhCcccCCCCEEEEe
Confidence 4679999999877776642 333344431 11356666665
No 368
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=42.25 E-value=37 Score=17.76 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=21.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++.. ..+..||++|
T Consensus 57 ~~~~dliilD~~l~~~~g~---~~~~~lr~~~~~~~~pii~~t 96 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGI---DILKLVKENPHTRRSPVVILT 96 (152)
T ss_dssp TTCBEEEEECSBCSSSBHH---HHHHHHHHSTTTTTSCEEEEE
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHhcccccCCCEEEEe
Confidence 3578999999776666532 2334444421 1244555554
No 369
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.16 E-value=36 Score=17.58 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=13.0
Q ss_pred hcCCCEEEEeCCCCCCC
Q psy858 29 IGDPPLVFLDEPTSGVD 45 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld 45 (72)
-..|+++|+|--..+.|
T Consensus 49 ~~~~dlii~D~~l~~~~ 65 (144)
T 3kht_A 49 QAKYDLIILDIGLPIAN 65 (144)
T ss_dssp TCCCSEEEECTTCGGGC
T ss_pred cCCCCEEEEeCCCCCCC
Confidence 46799999997666655
No 370
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=42.12 E-value=36 Score=17.51 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=10.1
Q ss_pred cCCCEEEEeCCCCCCC
Q psy858 30 GDPPLVFLDEPTSGVD 45 (72)
Q Consensus 30 ~~p~~lllDEP~~gld 45 (72)
..|+++|+|-...+.|
T Consensus 45 ~~~dlvi~D~~l~~~~ 60 (140)
T 3n53_A 45 HHPDLVILDMDIIGEN 60 (140)
T ss_dssp HCCSEEEEETTC----
T ss_pred CCCCEEEEeCCCCCCc
Confidence 5799999997655444
No 371
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.03 E-value=34 Score=17.21 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=22.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++.. ..+..|+++|
T Consensus 45 ~~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s 84 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSGL---ALVKQLRALPMEKTSKFVAVS 84 (127)
T ss_dssp HSCCSEEEEESBCSSSBHH---HHHHHHHHSCCSSCCEEEEEE
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhhccCCCCEEEEE
Confidence 3679999999877776642 3444444421 1245566554
No 372
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=41.84 E-value=36 Score=17.48 Aligned_cols=39 Identities=5% Similarity=0.158 Sum_probs=21.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~-~~~g~til~~~ 70 (72)
..|+++|+|--..+ ......+.+.+++. ...+..||++|
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIAT 88 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEE
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEe
Confidence 57999999965540 23344455555551 11345555554
No 373
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=41.78 E-value=28 Score=20.99 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHHH
Q psy858 13 RYSGGNKRKLSTAMALIGDP--------------PLVFLDEPTS-GVDPIS 48 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~p--------------~~lllDEP~~-gld~~~ 48 (72)
-+-+|..|.-++..++-.+. -.+++||.++ .|+...
T Consensus 201 ~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~~ 251 (266)
T 1fs5_A 201 ILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKT 251 (266)
T ss_dssp EEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHHH
T ss_pred EEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccch
Confidence 35678888888888876542 4699999987 566443
No 374
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.70 E-value=3.6 Score=24.25 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=23.2
Q ss_pred CCCEEEEeCCCCCCCH----HHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 31 DPPLVFLDEPTSGVDP----ISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 31 ~p~~lllDEP~~gld~----~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
...++++||--.-+.+ ...-++...+...+..+..+|+++++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4779999995332111 01112333443334458899998863
No 375
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.73 E-value=5.5 Score=20.55 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy858 35 VFLDEPTSGVDPISRHRLWAVLSQIQ 60 (72)
Q Consensus 35 lllDEP~~gld~~~~~~i~~~l~~~~ 60 (72)
-|+||-|.|-...+++++-.+-+...
T Consensus 14 kildevtdgapdearerieklakdvk 39 (101)
T 2lse_A 14 KILDEVTDGAPDEARERIEKLAKDVK 39 (101)
Confidence 37899999998888888877665543
No 376
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=41.51 E-value=51 Score=19.11 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=22.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+|+|= |..+.....+.+.+++........|++||
T Consensus 58 ~~iLID~---G~~~~~~~~l~~~l~~~~~~~i~~vi~TH 93 (243)
T 4hl2_A 58 RVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTH 93 (243)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred cEEEEEC---CCCCccHHHHHHHHHHhhCCCeeEEEECC
Confidence 3666663 45566667777777664222467799998
No 377
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=41.39 E-value=38 Score=20.25 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.9
Q ss_pred CceEEEEec
Q psy858 63 GQSIVLTSH 71 (72)
Q Consensus 63 g~til~~~h 71 (72)
+..|++|+|
T Consensus 168 ~~~vliVsH 176 (265)
T 3f3k_A 168 ASDIMVFAH 176 (265)
T ss_dssp CCEEEEEEC
T ss_pred CCcEEEEeC
Confidence 579999999
No 378
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=41.35 E-value=36 Score=17.36 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=21.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++.. .+..|+++|
T Consensus 50 ~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s 86 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGGL---EMLDRIKAGG-AKPYVIVIS 86 (137)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHTT-CCCEEEECC
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCcEEEEe
Confidence 579999999877666642 2333343321 245566554
No 379
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=41.35 E-value=21 Score=22.79 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=12.8
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy858 30 GDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~ 46 (72)
...+++++|-|..+...
T Consensus 288 ~~fD~Vi~dpP~~~~~~ 304 (396)
T 2as0_A 288 EKFDIVVLDPPAFVQHE 304 (396)
T ss_dssp CCEEEEEECCCCSCSSG
T ss_pred CCCCEEEECCCCCCCCH
Confidence 35689999999876543
No 380
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=41.17 E-value=40 Score=17.78 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=22.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 35 VFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 35 lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
+.|+--.+.|++.++..+..+...+... +..|.+..|
T Consensus 19 i~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~Gh 56 (123)
T 3oon_A 19 IEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGH 56 (123)
T ss_dssp EEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEEC
T ss_pred EEeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEE
Confidence 4555556667777776666666555543 446666666
No 381
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=41.16 E-value=8.6 Score=21.72 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=21.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
.+-+++++||.=.-++......+..++..+.+.-..++++
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~S 184 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYS 184 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEE
Confidence 4568999999754444444455555554433223344443
No 382
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=41.11 E-value=42 Score=19.89 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=12.0
Q ss_pred HHHHHhcCCCEEEEeCC
Q psy858 24 TAMALIGDPPLVFLDEP 40 (72)
Q Consensus 24 ia~~l~~~p~~lllDEP 40 (72)
+..+...++.++++||.
T Consensus 117 ~~~~~~~~~~vl~iDEi 133 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDI 133 (272)
T ss_dssp HHHHHTSSEEEEEECCH
T ss_pred HHHHHhcCCcEEEEECh
Confidence 33444567899999994
No 383
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=41.04 E-value=49 Score=19.84 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEe
Q psy858 20 RKLSTAMALI---GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTS 70 (72)
Q Consensus 20 qr~~ia~~l~---~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~ 70 (72)
+|+++..||. .+-+++++|+-. ++..-...+.++|+.+--. +..+++++
T Consensus 106 rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~ 158 (210)
T 3v2d_F 106 RKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVT 158 (210)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEEC
T ss_pred HHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEe
Confidence 5677777764 455799999854 4555667777888776321 24566654
No 384
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=40.62 E-value=52 Score=18.98 Aligned_cols=36 Identities=11% Similarity=0.304 Sum_probs=20.7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++|= |......+.+.+.+++........+++||
T Consensus 41 ~~iLiD~---G~~~~~~~~l~~~l~~~~~~~~~~vi~TH 76 (246)
T 2fhx_A 41 TVVIVSS---PFENLGTQTLMDWVAKTMKPKKVVAINTH 76 (246)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred eEEEEeC---CCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 3777773 44555566677777664222222467888
No 385
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=40.37 E-value=5.2 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=21.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+++++++||. ..++......+...+.+. ..+..+|+++
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~-~~~~~~i~~~ 139 (319)
T 2chq_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSC 139 (319)
T ss_dssp CCCEEEEEETG-GGSCHHHHHTTGGGTSSS-SSSEEEEEEE
T ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHHhc-CCCCeEEEEe
Confidence 45789999995 345665555554444321 1234455544
No 386
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=40.33 E-value=43 Score=17.91 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=28.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 34 LVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 34 ~lllDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
-+.|+-=.+.|++.+...+..+...+... +..|.+..|
T Consensus 25 ~i~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~i~I~Gh 63 (129)
T 2kgw_A 25 PIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGY 63 (129)
T ss_dssp CBCCCTTSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEEC
T ss_pred ceEeCCCCcccCHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 45677777789999998888877766554 567888877
No 387
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=40.14 E-value=1e+02 Score=22.29 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEe
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTS 70 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~--g~til~~~ 70 (72)
.+++..+++..|+++++=|-.-.++.+ .+.+.+.+++.... +.+||+++
T Consensus 204 ~LAl~agLA~gAd~ilIPE~p~~~~~~-~~~v~~~i~~~~~~gk~~~IVvVa 254 (787)
T 3o8o_A 204 WLALMAGIATGADYIFIPERAVPHGKW-QDELKEVCQRHRSKGRRNNTIIVA 254 (787)
T ss_dssp HHHHHHHHHTTCSEEECGGGCBCTTTH-HHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHhhCCCEEEeCCCCCChHHH-HHHHHHHHHHHHhcCCCceEEEEe
Confidence 688999999999988886643344422 34566677665433 45666664
No 388
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=40.13 E-value=0.17 Score=33.00 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=23.5
Q ss_pred CcCCCCChHHHHHHHHHHHHhcCCCEEE-EeCCCC
Q psy858 9 RESGRYSGGNKRKLSTAMALIGDPPLVF-LDEPTS 42 (72)
Q Consensus 9 ~~~~~lS~G~~qr~~ia~~l~~~p~~ll-lDEP~~ 42 (72)
.....+++|+++|+..+.++...|++++ +|+|+.
T Consensus 278 ~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 278 MNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp ECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 3455678899988877766667777655 666654
No 389
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=40.02 E-value=65 Score=22.01 Aligned_cols=42 Identities=14% Similarity=0.387 Sum_probs=28.5
Q ss_pred hcCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSG----------V-DPIS--------RHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~g----------l-d~~~--------~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|... + ++.. ++.+.+.+.++.+.|..++++.
T Consensus 241 ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~ 301 (553)
T 3ko1_A 241 LENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQ 301 (553)
T ss_dssp CBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECS
T ss_pred cccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEec
Confidence 678999999987432 1 2222 3346677777777788888765
No 390
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=39.96 E-value=43 Score=17.77 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=21.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.|+++|+|--..+.|-. .+.+.+++.. ....||++|
T Consensus 83 ~~dliilD~~l~~~~g~---~~~~~lr~~~-~~~~ii~ls 118 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGI---TCLSNIMEFD-KNARVIMIS 118 (157)
T ss_dssp GCCEEEECSSCSSSCHH---HHHHHHHHHC-TTCCEEEEE
T ss_pred CCCEEEEeccCCCccHH---HHHHHHHhhC-CCCcEEEEe
Confidence 68999999877776642 3344444432 244455544
No 391
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=39.90 E-value=31 Score=23.45 Aligned_cols=42 Identities=12% Similarity=0.290 Sum_probs=28.6
Q ss_pred hcCCCEEEEeCCCC-------------CCCH------HHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTS-------------GVDP------ISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~-------------gld~------~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.+|+++++|-|.. ..+. ..++.+.+.+.++.+.|..++++.
T Consensus 227 ~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~ 287 (543)
T 3ruv_A 227 VTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQ 287 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEES
T ss_pred ccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 57899999998742 2222 234457777777777788888875
No 392
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=39.90 E-value=60 Score=19.42 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTS--------GVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~--------gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+.++++||--. ..+......+.+.+... ..+..+|+++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~~i~~~ 176 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDDLVVILAG 176 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTTCEEEEEE
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCCEEEEEeC
Confidence 678999999642 33666666676666542 2355666665
No 393
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=39.85 E-value=37 Score=23.01 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=34.4
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllD-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
...+.+++| --...+|...++-+.+.++++...|+.|+++.
T Consensus 402 ~~~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d 443 (456)
T 3agd_A 402 GPIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVED 443 (456)
T ss_dssp CCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 445678888 45667999999999999999998899998873
No 394
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=39.84 E-value=42 Score=17.71 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=22.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++... .+..||++|
T Consensus 49 ~~~~dlii~D~~l~~~~g~---~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDGY---ALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp TCCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhCCCcCCCCEEEEE
Confidence 4579999999877776642 33344444221 245555554
No 395
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=39.76 E-value=39 Score=17.29 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=21.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++ ...+..+|++|
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKE-QTKQPSVLILT 95 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTT-SSSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHh-hCCCCCEEEEE
Confidence 579999999877666642 23333332 11255666665
No 396
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=39.70 E-value=39 Score=17.24 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=22.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++. ..+..++++|
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 82 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGT---ELLEKAHKL-RPGMKKIMVT 82 (132)
T ss_dssp HSCCSEEEECSBCSSSBHH---HHHHHHHHH-CTTSEEEEEE
T ss_pred cCCCCEEEEecCCCCCchH---HHHHHHHhh-CCCCcEEEEe
Confidence 3579999999766666532 233344432 2355566554
No 397
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=39.35 E-value=17 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.3
Q ss_pred CCCEEEEeCCCCCCC
Q psy858 31 DPPLVFLDEPTSGVD 45 (72)
Q Consensus 31 ~p~~lllDEP~~gld 45 (72)
..+++++|=|.+|..
T Consensus 315 ~fD~Vl~D~Pcsg~g 329 (429)
T 1sqg_A 315 QFDRILLDAPCSATG 329 (429)
T ss_dssp CEEEEEEECCCCCGG
T ss_pred CCCEEEEeCCCCccc
Confidence 458999999998864
No 398
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=39.18 E-value=51 Score=18.45 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=21.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+...+++. .....|+++|
T Consensus 50 ~~~dlvllD~~lp~~~g~---~~~~~lr~~-~~~~~ii~ls 86 (215)
T 1a04_A 50 LDPDLILLDLNMPGMNGL---ETLDKLREK-SLSGRIVVFS 86 (215)
T ss_dssp HCCSEEEEETTSTTSCHH---HHHHHHHHS-CCCSEEEEEE
T ss_pred cCCCEEEEeCCCCCCcHH---HHHHHHHHh-CCCCcEEEEE
Confidence 579999999876666642 233333332 1244555554
No 399
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.02 E-value=26 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=19.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
.+.++++||.- .+++.....+...+.+
T Consensus 660 ~~~vl~lDEi~-~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 660 PYSVILFDEIE-KAHPDVFNILLQILDD 686 (854)
T ss_dssp SSEEEEESSGG-GSCHHHHHHHHHHHTT
T ss_pred CCeEEEEeccc-ccCHHHHHHHHHHhcc
Confidence 34799999984 5777776666666643
No 400
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=38.93 E-value=41 Score=17.23 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=22.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQI---QKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~---~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++. ......+|++|
T Consensus 59 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~~~ii~~t 99 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGW---ELIDLFKQHFQPMKNKSIVCLLS 99 (146)
T ss_dssp CCCSEEEEESSCSSSCHH---HHHHHHHHHCGGGTTTCEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHH---HHHHHHHHhhhhccCCCeEEEEe
Confidence 679999999877776643 344444442 11345565554
No 401
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=38.86 E-value=64 Score=19.50 Aligned_cols=36 Identities=11% Similarity=0.338 Sum_probs=24.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.+.+++++||--- +|+ .+.+.+.++...|+.|++..
T Consensus 100 ~~~dvV~IDEaQF-f~~----~~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQF-FDD----EIVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGG-SCT----HHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEechhc-CCH----HHHHHHHHHHHCCCEEEEee
Confidence 5788999999754 343 24455556655688888754
No 402
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.83 E-value=83 Score=20.76 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---h-CCceEEEEec
Q psy858 21 KLSTAMALIGDPPLVFLDEPTSG----------VDPISRHRLWAVLSQIQ---K-TGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~g----------ld~~~~~~i~~~l~~~~---~-~g~til~~~h 71 (72)
|-.+..|-...|.++++||--+- -|....+.+..++..+- . .+.-||.+|+
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 44555666778999999995432 23445555666665553 1 2445666654
No 403
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.67 E-value=19 Score=23.94 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=20.4
Q ss_pred cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 30 GDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~--gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+.++++||.-. +-+......+..++. ..+..+|+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~---~~~~~iIli~~ 187 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICN 187 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEES
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH---hcCCCEEEEEc
Confidence 4577999999632 222222233333332 34556777664
No 404
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=38.67 E-value=43 Score=17.49 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=17.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.+ ...+...+++. ..+..||++|
T Consensus 49 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~-~~~~~ii~ls 85 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAE---AIDGLVRLKRF-DPSNAVALIS 85 (154)
T ss_dssp CCCSEEEECC---------CHHHHHHHHHH-CTTSEEEEC-
T ss_pred CCCCEEEEeCCCCCCc---hHHHHHHHHHh-CCCCeEEEEe
Confidence 5699999997554433 22333344432 2245566554
No 405
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=38.44 E-value=44 Score=18.37 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=20.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|=-..+.|- ..+...+++. ..+..||++|
T Consensus 49 ~~~~dlvl~D~~lp~~~g---~~~~~~l~~~-~~~~~ii~lt 86 (184)
T 3rqi_A 49 AEKFEFITVXLHLGNDSG---LSLIAPLCDL-QPDARILVLT 86 (184)
T ss_dssp TSCCSEEEECSEETTEES---HHHHHHHHHH-CTTCEEEEEE
T ss_pred hCCCCEEEEeccCCCccH---HHHHHHHHhc-CCCCCEEEEe
Confidence 467999999965544432 1233334432 2345566554
No 406
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=38.36 E-value=25 Score=21.01 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=15.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+..++.+++||..| .+.+...++++|+
T Consensus 54 CSGRIsv~~~~~~~----------------~K~~g~wl~~sH~ 80 (200)
T 2it2_A 54 CSGRISVMEMPHFG----------------DKVNAKWLGKWHR 80 (200)
T ss_dssp BCCEEEEEEEC-----------------------CEEEEEESS
T ss_pred CCccEEEEecCCcC----------------CCCCCEEEEEECC
Confidence 44578888988422 1235578888885
No 407
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=38.27 E-value=64 Score=19.31 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.0
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 38 DEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 38 DEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
|+...++|+.....+.+.+..+.+.|.-+++++
T Consensus 21 ~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVh 53 (252)
T 1z9d_A 21 GEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVI 53 (252)
T ss_dssp CSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 333457888888999999988877676665553
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=38.20 E-value=1.9 Score=24.75 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 15 S~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.|+.+|..++..+..+|...... .+.++|..++.+.+.+... .+..+++.+|
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~ 113 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVP 113 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECT
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEec
Confidence 467777888887777766532222 2344555555555544322 2446666554
No 409
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=38.11 E-value=41 Score=16.99 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.3
Q ss_pred cCCCEEEEeCCCCCCCH
Q psy858 30 GDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~ 46 (72)
..|+++++|--..+.+-
T Consensus 54 ~~~dlvi~d~~~~~~~g 70 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG 70 (140)
T ss_dssp CCCSEEEECSSCSSSCH
T ss_pred CCCcEEEEecCCCcccH
Confidence 47999999987766664
No 410
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=37.79 E-value=37 Score=17.97 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCceEEEEec
Q psy858 51 RLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 51 ~i~~~l~~~~~~g~til~~~h 71 (72)
...+.++++.+.|..++++|-
T Consensus 28 ~~~~~l~~l~~~Gi~~~iaTG 48 (126)
T 1xpj_A 28 DVIEQLREYHQLGFEIVISTA 48 (126)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEeC
Confidence 345566666667888888774
No 411
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=37.54 E-value=49 Score=17.75 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=21.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++. ....+|+++
T Consensus 69 ~~~~dlvilD~~l~~~~g~---~l~~~lr~~--~~~~ii~~s 105 (164)
T 3t8y_A 69 ELKPDVITMDIEMPNLNGI---EALKLIMKK--APTRVIMVS 105 (164)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHH--SCCEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhc--CCceEEEEe
Confidence 3479999999776666642 233334432 234555544
No 412
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=37.44 E-value=67 Score=19.30 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=21.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~ 58 (72)
.++.++++||-- .++......+...+.+
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMED 116 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHh
Confidence 478899999974 5677777777777665
No 413
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=37.38 E-value=42 Score=16.95 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=21.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++++|--..+.|-. .+.+.+++.......++++|
T Consensus 47 ~~~dlvllD~~l~~~~g~---~~~~~l~~~~~~~~~ii~ls 84 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDGL---AVLERIRAGFEHQPNVIMLT 84 (130)
T ss_dssp HCCSEEEEESCCSSSCHH---HHHHHHHHHCSSCCEEEEEE
T ss_pred CCCCEEEEecCCCCCCHH---HHHHHHHhcCCCCCcEEEEe
Confidence 579999999877666642 33444444212244455443
No 414
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=37.35 E-value=40 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 44 VDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 44 ld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.|....+.-++.+..++++...+|.+.|
T Consensus 191 ~~~~~I~~qL~~a~~~Ar~~G~AIaIGh 218 (261)
T 2qv5_A 191 VTEASILRKLDDLERIARRNGQAIGVAS 218 (261)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEeC
Confidence 3555555555555555444336677766
No 415
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=37.25 E-value=80 Score=20.11 Aligned_cols=55 Identities=9% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE
Q psy858 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~ 68 (72)
+.+.+.|.++-+.--..=.-.|..++|.-|.. +.....+.+++....+.++.|++
T Consensus 89 a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~---~e~~~~y~~~i~~~~~~~~nVli 143 (294)
T 3g40_A 89 TAEFEENLVVGMEALTGSFFRPSILFLRLPEN---RDRDEEIREIIRKASMYRMGVLL 143 (294)
T ss_dssp ----CHHHHHHHHHHTTCSSCSCEEEEECCSS---GGGHHHHHHHHHHHHHTTCEEEE
T ss_pred cCChhHHHHHHHHHcCCCCCCCCEEEeCCCCC---hhhhHHHHHHHHHHHHhCceEEE
Confidence 45688999988877777778899999987744 35555677777776655555554
No 416
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=37.25 E-value=42 Score=23.26 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=23.7
Q ss_pred EEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 34 LVFLDEPTSGVD---PISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 34 ~lllDEP~~gld---~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
++++||--.-+. ......+..+.+.-++-|..++++|+.
T Consensus 346 vvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQR 387 (574)
T 2iut_A 346 VVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQR 387 (574)
T ss_dssp EEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESC
T ss_pred EEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 799999865432 333333444444434458889988863
No 417
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=37.19 E-value=56 Score=18.35 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=22.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+...+++.. .+..|+++|
T Consensus 42 ~~~dlvllD~~lp~~~g~---~~~~~lr~~~-~~~~ii~lt 78 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGY---EICRMIKETR-PETWVILLT 78 (220)
T ss_dssp SCCSEEEEESBCSSSBHH---HHHHHHHHHC-TTSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCcEEEEE
Confidence 789999999766666542 3344444422 355566554
No 418
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=37.07 E-value=40 Score=19.27 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=26.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..++++...+...++......+.+.+.+..+.|..+++++
T Consensus 109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3467777777778887777666666666655555555554
No 419
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=37.01 E-value=57 Score=18.32 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=22.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|--..+.|-. .+...+++. ..+..||++|
T Consensus 44 ~~~~dlvllD~~l~~~~g~---~~~~~lr~~-~~~~~ii~ls 81 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDGW---EILKSMRES-GVNTPVLMLT 81 (225)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHT-TCCCCEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhc-CCCCCEEEEe
Confidence 4679999999877666642 233334332 1245555554
No 420
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=36.98 E-value=55 Score=18.16 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=21.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++. ..+..||++|
T Consensus 47 ~~~dlvl~D~~lp~~~g~---~~~~~l~~~-~~~~~ii~ls 83 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSGI---ELQEQLTAI-SDGIPIVFIT 83 (208)
T ss_dssp TSCEEEEEESCCSSSCHH---HHHHHHHHT-TCCCCEEEEE
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhc-CCCCCEEEEe
Confidence 468999999766666642 233344432 1345555554
No 421
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=36.95 E-value=52 Score=19.64 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHH-H---hCCceEEEEec
Q psy858 49 RHRLWAVLSQI-Q---KTGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~-~---~~g~til~~~h 71 (72)
.+++...+.++ . ..+.+|++|||
T Consensus 160 ~~Rv~~~l~~li~~~~~~~~~vlvVsH 186 (262)
T 1yfk_A 160 IARALPFWNEEIVPQIKEGKRVLIAAH 186 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEcC
Confidence 34455555553 1 35779999999
No 422
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=36.90 E-value=34 Score=19.40 Aligned_cols=12 Identities=17% Similarity=0.374 Sum_probs=9.6
Q ss_pred hCCceEEEEecC
Q psy858 61 KTGQSIVLTSHR 72 (72)
Q Consensus 61 ~~g~til~~~h~ 72 (72)
..+.++++|+|+
T Consensus 100 ~~~~~vllVgH~ 111 (172)
T 3f2i_A 100 PENAQIAIVGHE 111 (172)
T ss_dssp CTTCEEEEEECT
T ss_pred CCCCEEEEEeCC
Confidence 346799999995
No 423
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.78 E-value=92 Score=20.67 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-CCceEEEEec
Q psy858 21 KLSTAMALIGDPPLVFLDEPTS----------GVDPISRHRLWAVLSQIQ---K-TGQSIVLTSH 71 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP~~----------gld~~~~~~i~~~l~~~~---~-~g~til~~~h 71 (72)
|-.+..|-...|.++++||--+ +-|......+..+|..+- . .+.-||.+|+
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 5556667778899999999633 224444555555665552 1 2455666664
No 424
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=36.72 E-value=67 Score=19.11 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 39 EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 39 EP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+...++|+...+.+.+.+..+.+.|.-+++|+
T Consensus 23 ~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVh 54 (247)
T 2a1f_A 23 EDGLGIDPAILDRMAVEIKELVEMGVEVSVVL 54 (247)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33457888889999999988876676665553
No 425
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=36.72 E-value=46 Score=17.20 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=21.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+.| ...+.+.+++.. ....||++|
T Consensus 66 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~~ii~lt 102 (146)
T 4dad_A 66 DAFDILMIDGAALDTA---ELAAIEKLSRLH-PGLTCLLVT 102 (146)
T ss_dssp TTCSEEEEECTTCCHH---HHHHHHHHHHHC-TTCEEEEEE
T ss_pred CCCCEEEEeCCCCCcc---HHHHHHHHHHhC-CCCcEEEEe
Confidence 6799999997665533 233444444422 345566554
No 426
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=36.63 E-value=66 Score=18.99 Aligned_cols=53 Identities=4% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEEEec
Q psy858 18 NKRKLSTAMAL---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSH 71 (72)
Q Consensus 18 ~~qr~~ia~~l---~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~---~g~til~~~h 71 (72)
++..-.+.+++ ..+++++|+--+.+.++... ..+.+.+.+... .+.+++++++
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEc
Confidence 33344555555 37888766544444555443 344455555421 1578888775
No 427
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=36.60 E-value=45 Score=17.08 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=21.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|=-..+.|-. .+...+++.......|+++|
T Consensus 51 ~~~dlvllD~~mp~~~G~---~~~~~lr~~~~~~~~ii~lt 88 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGL---LSTKMIRRDLGYTSPIVALT 88 (133)
T ss_dssp CCCSEEEECSCCSSSCHH---HHHHHHHHHSCCCSCEEEEE
T ss_pred CCCCEEEEeCCCCCCChH---HHHHHHHhhcCCCCCEEEEE
Confidence 579999999766666642 23334433211234455544
No 428
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=36.57 E-value=73 Score=19.45 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=28.9
Q ss_pred CCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 11 SGRYSGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 11 ~~~lS~G~~qr~~ia~~l~~~--p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.+...+.+..+..+.+.++.. ++++=+ |-+ .+... +.+++...++.+..||++.||
T Consensus 91 GG~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~--~~~~~---~~~l~~~a~~~~~kiI~S~Hd 148 (258)
T 4h3d_A 91 GGEKLISRDYYTTLNKEISNTGLVDLIDV-ELF--MGDEV---IDEVVNFAHKKEVKVIISNHD 148 (258)
T ss_dssp TCSCCCCHHHHHHHHHHHHHTTCCSEEEE-EGG--GCHHH---HHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCchhhHH-hhh--ccHHH---HHHHHHHHHhCCCEEEEEEec
Confidence 344555566777776665543 444322 221 22222 223333334467889999985
No 429
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=36.55 E-value=1e+02 Score=21.09 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 17 G~~qr~~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
-..|+-|+..++..+|-.+|.=-|-+|=... +.+++..+.+.|..|+++++
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t----i~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPPGTGKTTT----VVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCTTSCHHHH----HHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHHHH----HHHHHHHHHhCCCeEEEEcC
Confidence 4567778888887665445554476774332 55566666667888999886
No 430
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.43 E-value=45 Score=16.97 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.9
Q ss_pred hcCCCEEEEeCCCC
Q psy858 29 IGDPPLVFLDEPTS 42 (72)
Q Consensus 29 ~~~p~~lllDEP~~ 42 (72)
-..|+++|+|--..
T Consensus 45 ~~~~dlvi~d~~~~ 58 (140)
T 2qr3_A 45 EENPEVVLLDMNFT 58 (140)
T ss_dssp HSCEEEEEEETTTT
T ss_pred cCCCCEEEEeCCcC
Confidence 35689999997665
No 431
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=36.26 E-value=45 Score=16.95 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=20.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 32 p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
|+++|+|--..+.|-. .+.+.+++.......||++|
T Consensus 53 ~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~ii~~s 88 (136)
T 3hdv_A 53 IGLMITDLRMQPESGL---DLIRTIRASERAALSIIVVS 88 (136)
T ss_dssp EEEEEECSCCSSSCHH---HHHHHHHTSTTTTCEEEEEE
T ss_pred CcEEEEeccCCCCCHH---HHHHHHHhcCCCCCCEEEEe
Confidence 8999999877776642 23333333211245566554
No 432
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=36.09 E-value=44 Score=16.82 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=14.5
Q ss_pred HhcCCCEEEEeCCCCCCCH
Q psy858 28 LIGDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 28 l~~~p~~lllDEP~~gld~ 46 (72)
--..|+++++|=-..+.|-
T Consensus 43 ~~~~~dlvllD~~~p~~~g 61 (122)
T 3gl9_A 43 SEFTPDLIVLXIMMPVMDG 61 (122)
T ss_dssp TTBCCSEEEECSCCSSSCH
T ss_pred HhcCCCEEEEeccCCCCcH
Confidence 3467999999977767664
No 433
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=36.05 E-value=98 Score=21.79 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~ 64 (72)
.+-+++++||- --+|......+..++..+...+.
T Consensus 317 ~~l~~lVlDEA-H~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 317 GAYDIIICDEC-HSTDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp TSCSEEEETTT-TCCSHHHHHHHHHHHHHTTTTTC
T ss_pred CcccEEEEccc-hhcCccHHHHHHHHHHhhhhcCC
Confidence 34788999999 77888877777766665544443
No 434
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=35.88 E-value=45 Score=16.80 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=20.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.|+++|+|-...+.|- ..+.+.+++.. ....|+++|
T Consensus 46 ~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s 81 (135)
T 3eqz_A 46 KQDIIILDLMMPDMDG---IEVIRHLAEHK-SPASLILIS 81 (135)
T ss_dssp TTEEEEEECCTTTTHH---HHHHHHHHHTT-CCCEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhCC-CCCCEEEEE
Confidence 4899999977665443 23344444322 345566554
No 435
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=35.82 E-value=35 Score=19.19 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhCCceEEEEec
Q psy858 49 RHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 49 ~~~i~~~l~~~~~~g~til~~~h 71 (72)
.+++...+.++ + .+|++|+|
T Consensus 114 ~~R~~~~l~~l-~--~~vlvVsH 133 (177)
T 1v37_A 114 QERVFRFLEGL-K--APAVLFTH 133 (177)
T ss_dssp HHHHHHHHHHC-C--SCEEEEEC
T ss_pred HHHHHHHHHHc-C--CCEEEEcC
Confidence 34455566665 3 68999999
No 436
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=35.82 E-value=48 Score=17.15 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.4
Q ss_pred CCCEEEEeCCCCCCC
Q psy858 31 DPPLVFLDEPTSGVD 45 (72)
Q Consensus 31 ~p~~lllDEP~~gld 45 (72)
.|+++|+|--..+.|
T Consensus 60 ~~dlvilD~~l~~~~ 74 (145)
T 3kyj_B 60 NVDLILLDIEMPVMD 74 (145)
T ss_dssp TCCEEEECTTSCCCT
T ss_pred CCCEEEEeCCCCCCC
Confidence 699999997655544
No 437
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=35.65 E-value=45 Score=19.50 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCceEEEEe
Q psy858 52 LWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 52 i~~~l~~~~~~g~til~~~ 70 (72)
..+.++++.+.|..++++|
T Consensus 25 ~~~al~~l~~~G~~~~iaT 43 (261)
T 2rbk_A 25 TIEALEAAHAKGLKIFIAT 43 (261)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEC
Confidence 4445566666788877766
No 438
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*
Probab=35.20 E-value=72 Score=19.99 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 39 EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 39 EP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+|...+|+...+.+.+.+....+.|.-||+--|.
T Consensus 72 ~~~~~~~~~~l~~l~~~v~~a~~~Gi~vildlH~ 105 (345)
T 3ndz_A 72 APEYTIDQTWMKRVEEIANYAFDNDMYVIINLHH 105 (345)
T ss_dssp TTTCCBCHHHHHHHHHHHHHHHTTTCEEEECCCS
T ss_pred CCCCccCHHHHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3456678888888888887776778888887773
No 439
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.09 E-value=38 Score=17.38 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=19.7
Q ss_pred cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~g--ld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--..+ .|- ..+.+.+++.. ....||++|
T Consensus 49 ~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~~-~~~~ii~~s 87 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSG---IELLETLVKRG-FHLPTIVMA 87 (136)
T ss_dssp TTEEEEEEETTGGGBTTHH---HHHHHHHHHTT-CCCCEEEEE
T ss_pred cCCCEEEEeCcCCCCCccH---HHHHHHHHhCC-CCCCEEEEE
Confidence 45889999976544 432 23333444322 245555554
No 440
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=35.08 E-value=1.2e+02 Score=21.98 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCCCEEEEeCC
Q psy858 21 KLSTAMALIGDPPLVFLDEP 40 (72)
Q Consensus 21 r~~ia~~l~~~p~~lllDEP 40 (72)
|-.+..|--..|.++++||-
T Consensus 287 r~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 287 RKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp HHHHHHHTTSCSEEEEEESG
T ss_pred HHHHHHHHHcCCeEEEEehh
Confidence 44566677788999999994
No 441
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=34.92 E-value=21 Score=19.31 Aligned_cols=42 Identities=14% Similarity=0.058 Sum_probs=20.1
Q ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 30 GDPPLVFLDEPTSGVDP---ISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~---~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
.++.++++||--.-.+. .....+.+.+..+.+. +..+|.++.
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 159 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEEC
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCC
Confidence 44669999996432211 1112233444444443 455666553
No 442
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=34.69 E-value=75 Score=19.06 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 39 EPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 39 EP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+.+.++|+...+.+.+.+..+.+.|.-++++
T Consensus 27 ~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV 57 (255)
T 2jjx_A 27 QTGNSFNSKRLEHIANEILSIVDLGIEVSIV 57 (255)
T ss_dssp SSSCSCCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3356788999999999998887667665555
No 443
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.58 E-value=52 Score=17.22 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=22.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++. .....||++|
T Consensus 56 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 93 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDGP---TLLARIHQQ-YPSTTRILLT 93 (153)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHH-CTTSEEEEEC
T ss_pred cCCCCEEEEeCCCCcCcHH---HHHHHHHhH-CCCCeEEEEE
Confidence 3579999999877776643 233344442 2355666655
No 444
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=34.47 E-value=99 Score=22.29 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CceEEEEe
Q psy858 19 KRKLSTAMALIGDPPLVFLDEPTSGVDPISR-HRLWAVLSQIQKT-GQSIVLTS 70 (72)
Q Consensus 19 ~qr~~ia~~l~~~p~~lllDEP~~gld~~~~-~~i~~~l~~~~~~-g~til~~~ 70 (72)
.=.+++..+++..|+++++=|- ..|.... +.+..+.++..+. +.+||+++
T Consensus 577 aG~lAl~aglA~gad~ilIPE~--~~~l~~~~~~i~~~~~r~~~~~~~~iVvva 628 (762)
T 3o8l_A 577 CGYLATMAGLAAGADAAYIFEE--PFTIRDLQANVEHLVQKMKTTVKRGLVLRN 628 (762)
T ss_dssp CCHHHHHHHHHTTCSEEECSSS--CCCHHHHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhHHHHHHHHhhCCCEEEECCC--CCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 3478999999999999888553 3444433 3344444444332 34566654
No 445
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=34.42 E-value=80 Score=19.30 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=25.8
Q ss_pred EEEeCCC--CCCCHHHHHHHHHHHHHHHhC-CceEEEE
Q psy858 35 VFLDEPT--SGVDPISRHRLWAVLSQIQKT-GQSIVLT 69 (72)
Q Consensus 35 lllDEP~--~gld~~~~~~i~~~l~~~~~~-g~til~~ 69 (72)
+-|+-|- +.++......+.+.+.++.+. ..-++++
T Consensus 41 itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 78 (276)
T 3rrv_A 41 ITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVI 78 (276)
T ss_dssp EEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 5567775 899999999999999887654 4444444
No 446
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=34.35 E-value=51 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 43 GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 43 gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|..-.+.....|+.+.++|..|++.||-
T Consensus 30 Itdd~RI~a~lpTI~~ll~~gakvil~SHl 59 (398)
T 1vpe_A 30 VQDDTRIRAALPTIKYALEQGAKVILLSHL 59 (398)
T ss_dssp ESCCHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCChHHHHHHHHHHHHHHHCCCEEEEEccC
Confidence 457777777888888888888889999993
No 447
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=34.34 E-value=49 Score=16.78 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=21.8
Q ss_pred CEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~-~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
+.+++|=-- -.-.......+.+.++.+++.|..+.++|.
T Consensus 3 k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~ 42 (137)
T 2pr7_A 3 RGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSN 42 (137)
T ss_dssp CEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeC
Confidence 455665221 111233444567777777777877777664
No 448
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.24 E-value=48 Score=16.68 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.1
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy858 29 IGDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~ 46 (72)
-.+|+++|+|--..+.|-
T Consensus 48 ~~~~dlii~d~~l~~~~g 65 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDG 65 (132)
T ss_dssp HTCCSEEEEESCBTTBCH
T ss_pred hcCCCEEEEecCCCCCCH
Confidence 467999999987777664
No 449
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=34.16 E-value=80 Score=19.19 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.4
Q ss_pred hcCCCEEEEeCCCC
Q psy858 29 IGDPPLVFLDEPTS 42 (72)
Q Consensus 29 ~~~p~~lllDEP~~ 42 (72)
-..|.++++||--.
T Consensus 97 ~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 97 KGNMCCLFINDLDA 110 (293)
T ss_dssp TSSCCCEEEECCC-
T ss_pred cCCCeEEEEechhh
Confidence 44789999999743
No 450
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=34.15 E-value=81 Score=19.28 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 44 VDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 44 ld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.|....+.-++.+..++++...+|.+.|
T Consensus 165 ~~~~~I~~ql~~a~~~A~~~G~aIaIGh 192 (245)
T 2nly_A 165 SSRKEVIKNMRKLAKKAKQGSEPIGIGH 192 (245)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCcEEEEEC
Confidence 3445555555555555555446666666
No 451
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=34.05 E-value=52 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 43 GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 43 gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|..-.+.-...|+.+.++|..|++.||-
T Consensus 31 Itdd~RI~aalpTI~~ll~~gakvil~SHl 60 (387)
T 1zmr_A 31 VTSDARIRASLPTIELALKQGAKVMVTSHL 60 (387)
T ss_dssp ESCCHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCChHHHHHHHHHHHHHHHCCCEEEEEccC
Confidence 456677777788888888888889999993
No 452
>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.80A {Sulfolobus solfataricus} SCOP: d.282.1.1
Probab=33.97 E-value=30 Score=20.88 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=7.8
Q ss_pred CCCEEEEeCCCC
Q psy858 31 DPPLVFLDEPTS 42 (72)
Q Consensus 31 ~p~~lllDEP~~ 42 (72)
..++.+++||..
T Consensus 51 SGRIsv~~~~~~ 62 (213)
T 1tlj_A 51 SGRITIVDAEMP 62 (213)
T ss_dssp CCEEEEEEESST
T ss_pred CccEEEEecCCC
Confidence 346777788754
No 453
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=33.90 E-value=53 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 43 GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 43 gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|..-.+.-...|+.+.++|..|++.||-
T Consensus 31 Itdd~RI~aalpTI~~ll~~gakvil~SHl 60 (394)
T 1php_A 31 ITDDTRIRAALPTIRYLIEHGAKVILASHL 60 (394)
T ss_dssp ESCCHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCChHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 456677777888888888888889999993
No 454
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=33.67 E-value=53 Score=21.86 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 44 VDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 44 ld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
.|..-.+.....|+.+.++|..|++.||-
T Consensus 37 tdd~RI~aalpTI~~ll~~GakVil~SHl 65 (403)
T 3q3v_A 37 TDDRRIRSAIPTIRYCLDNGCSVILASHL 65 (403)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 46677777788888888888889999993
No 455
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=33.65 E-value=46 Score=16.32 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=21.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++++|--..+.|-. .+.+.+++ .....++++|
T Consensus 44 ~~~dlvl~D~~l~~~~g~---~~~~~l~~--~~~~~ii~~s 79 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGL---EVAKTIRK--TSSVPILMLS 79 (120)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHH--HCCCCEEEEE
T ss_pred CCCCEEEEeccCCCCCHH---HHHHHHHh--CCCCCEEEEe
Confidence 579999999876666643 23344443 2345555544
No 456
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=33.43 E-value=54 Score=21.71 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 43 GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 43 gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|..-.+.....|+.+.++|..|++.||-
T Consensus 29 Itdd~RI~aalpTI~~ll~~gakvil~SHl 58 (390)
T 1v6s_A 29 VQDETRILESLPTLRHLLAGGASLVLLSHL 58 (390)
T ss_dssp ESCCHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCChHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 456777777888888888888889999993
No 457
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=33.40 E-value=47 Score=18.73 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=22.9
Q ss_pred CEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 33 PLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 33 ~~lllDEP~~gl-d~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
++++.......+ |+.....+.+.+.+..+.|..+++++
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 455555555555 56666667666666655565555553
No 458
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A
Probab=33.14 E-value=74 Score=21.05 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 41 TSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 41 ~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
....|.......-+++..+.+.|..++++.|
T Consensus 88 ~g~~n~~gl~~y~~~id~l~~~GI~p~vtL~ 118 (431)
T 1ug6_A 88 RGRINPKGLAFYDRLVDRLLASGITPFLTLY 118 (431)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3578999999999999999888999988875
No 459
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=33.10 E-value=46 Score=20.50 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE
Q psy858 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68 (72)
Q Consensus 27 ~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~ 68 (72)
..+.+.+++.++--+.++++...+.+.++++..++.|..+++
T Consensus 125 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~ 166 (346)
T 3ktn_A 125 AFLAEVDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCF 166 (346)
T ss_dssp HHHTTCSEEEECTHHHHHCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 456778888886433335666667777777766666766654
No 460
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=33.03 E-value=74 Score=18.48 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=29.4
Q ss_pred HHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 20 RKLSTAMALIG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 20 qr~~ia~~l~~---~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+|+++..||.. +-+++++|+- .++..-...+.+++..+.- +..++++
T Consensus 74 rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~~-~~~~LiV 123 (175)
T 2ftc_D 74 RALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRRW-GDSVLLV 123 (175)
T ss_pred HHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCCC-CCceEEE
Confidence 67888887754 5578888874 3444556677777766532 2344444
No 461
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.02 E-value=50 Score=16.55 Aligned_cols=36 Identities=22% Similarity=0.079 Sum_probs=20.9
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~g-ld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.|+++|+|--..+ .|-. .+.+.+++.. .+..++++|
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~-~~~~ii~~s 86 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREID-PNMPIVYIS 86 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHC-TTCCEEEEE
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcC-CCCCEEEEe
Confidence 7999999976664 5542 3344444432 245555554
No 462
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=33.02 E-value=73 Score=18.42 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=21.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+...+++. ..+..||+.|
T Consensus 65 ~~~~dlvllD~~lp~~~g~---~~~~~lr~~-~~~~~ii~lt 102 (250)
T 3r0j_A 65 ETRPDAVILDVXMPGMDGF---GVLRRLRAD-GIDAPALFLT 102 (250)
T ss_dssp HHCCSEEEEESCCSSSCHH---HHHHHHHHT-TCCCCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhc-CCCCCEEEEE
Confidence 3579999999776666642 233333332 1244555554
No 463
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=33.00 E-value=39 Score=22.52 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=11.6
Q ss_pred CCCEEEEeCCCCCC
Q psy858 31 DPPLVFLDEPTSGV 44 (72)
Q Consensus 31 ~p~~lllDEP~~gl 44 (72)
..+.+++|=|.+|.
T Consensus 187 ~fD~Il~D~PcSg~ 200 (479)
T 2frx_A 187 MFDAILLDAPCSGE 200 (479)
T ss_dssp CEEEEEEECCCCCG
T ss_pred cCCEEEECCCcCCc
Confidence 46899999999875
No 464
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ...
Probab=32.80 E-value=1.1e+02 Score=20.48 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=27.3
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 39 EPT--SGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 39 EP~--~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
||. ...|.......-+++..+.+.|..++++.|
T Consensus 108 ~P~G~g~~n~~gl~~yd~lid~l~~~GI~pivtL~ 142 (468)
T 2j78_A 108 LPEGTGRVNQKGLDFYNRIIDTLLEKGITPFVTIY 142 (468)
T ss_dssp STTSSSCCCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 454 467888889999999998888999999875
No 465
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=32.78 E-value=53 Score=16.77 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=21.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~ 70 (72)
..|+++|+|--..+.|-. .+.+.+++... .+..+|+++
T Consensus 58 ~~~dlii~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~ls 96 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNGI---EFLKELRDDSSFTDIEVFVLT 96 (143)
T ss_dssp CCCSEEEEETTCTTSCHH---HHHHHHTTSGGGTTCEEEEEE
T ss_pred CCCCEEEEecCCCCCCHH---HHHHHHHcCccccCCcEEEEe
Confidence 569999999876666642 33333333211 345555554
No 466
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=32.67 E-value=52 Score=17.96 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=23.8
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC---CceEEEEec
Q psy858 37 LDEPTSGVDPISRHRLWAVLSQIQKT---GQSIVLTSH 71 (72)
Q Consensus 37 lDEP~~gld~~~~~~i~~~l~~~~~~---g~til~~~h 71 (72)
|+--.+.|++.+...+..+...+... +..|.+..|
T Consensus 26 F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~Gh 63 (148)
T 4erh_A 26 FNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGF 63 (148)
T ss_dssp BCTTCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEE
T ss_pred ecCCccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEE
Confidence 44456678888888777777666543 567777777
No 467
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=32.44 E-value=57 Score=21.80 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 43 GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 43 gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|..-.+.-...|+.+.++|..|++.||-
T Consensus 30 Itdd~RI~aalpTI~~ll~~Gakvil~SHl 59 (415)
T 16pk_A 30 ITNDYRIRSALPTLKKVLTEGGSCVLMSHL 59 (415)
T ss_dssp ESCCHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCchHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 356667777788888888888889999993
No 468
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=32.18 E-value=54 Score=19.49 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=22.0
Q ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPI---SRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~---~~~~i~~~l~~~~~~g~til~~~ 70 (72)
...+++++|=--+=+|.. -.....+.++++.+.|..++++|
T Consensus 19 ~~~kli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaT 62 (283)
T 3dao_A 19 GMIKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCS 62 (283)
T ss_dssp CCCCEEEECCBTTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCceEEEEeCcCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEc
Confidence 345788887432222211 11334445555566788888776
No 469
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.15 E-value=56 Score=16.81 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=21.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++. .....|+++|
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~l~~~l~~~-~~~~~ii~ls 83 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSGE---DVLDWINQN-DIPTSVIIAT 83 (137)
T ss_dssp HHCCSEEEECSBCSSSBHH---HHHHHHHHT-TCCCEEEEEE
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHhc-CCCCCEEEEE
Confidence 3579999999766666532 233344332 2345566554
No 470
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=32.12 E-value=54 Score=18.25 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 32 p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
.++++.......++......+.+.+.+..+.|..+++++
T Consensus 108 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 356666666667776655666666666555565666654
No 471
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=32.08 E-value=50 Score=16.21 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=13.0
Q ss_pred hcCCCEEEEeCCCCCCCH
Q psy858 29 IGDPPLVFLDEPTSGVDP 46 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~ 46 (72)
-..|+++++|--..+.|-
T Consensus 43 ~~~~dlvi~D~~l~~~~g 60 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDG 60 (121)
T ss_dssp HHCCSEEEEESEETTEEH
T ss_pred cCCCCEEEEeCCCCCCcH
Confidence 357999999976655553
No 472
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=32.07 E-value=1.1e+02 Score=20.30 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+.++-+..+....+|+..++.+.+.+..+.+.|.+|+-+
T Consensus 244 ~lrIgv~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~v 282 (471)
T 3kfu_E 244 PLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREV 282 (471)
T ss_dssp SCEEEEEGGGTTTCCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCEEEEECCccCCCCHHHHHHHHHHHHHHHHcCCeeeee
Confidence 346777777667899999999999998887778887654
No 473
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=32.07 E-value=61 Score=17.83 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=23.6
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEec
Q psy858 37 LDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71 (72)
Q Consensus 37 lDEP~~gld~~~~~~i~~~l~~~~~~-g~til~~~h 71 (72)
||-=.+.|++.+...+..+...+.+. +..|.+..|
T Consensus 38 F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~i~I~Gh 73 (149)
T 2k1s_A 38 FDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGY 73 (149)
T ss_dssp BSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred eCCCCccCCHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 33445678888888877777666554 456777776
No 474
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=32.05 E-value=17 Score=22.02 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=7.8
Q ss_pred CceEEEEec
Q psy858 63 GQSIVLTSH 71 (72)
Q Consensus 63 g~til~~~h 71 (72)
+..|++++|
T Consensus 195 ~~~VlvVsH 203 (275)
T 3dcy_A 195 AASVLVVSH 203 (275)
T ss_dssp SCEEEEEEC
T ss_pred CceEEEEec
Confidence 578999999
No 475
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=32.00 E-value=57 Score=17.63 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCCEEE-EeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 31 DPPLVF-LDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~ll-lDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
+.++-| +|-|++ +|.+..+..+.............+++.+
T Consensus 41 ~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~ 82 (112)
T 1j26_A 41 NSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTS 82 (112)
T ss_dssp CCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEE
T ss_pred cceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEE
Confidence 345655 699985 9999999988877654333222344443
No 476
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=31.93 E-value=97 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHHhcCCCEEEEeCC
Q psy858 24 TAMALIGDPPLVFLDEP 40 (72)
Q Consensus 24 ia~~l~~~p~~lllDEP 40 (72)
+..+-...|.++++||-
T Consensus 200 ~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 200 FAVARELQPSIIFIDQV 216 (389)
T ss_dssp HHHHHHSSSEEEEEETG
T ss_pred HHHHHhcCCeEEEEECc
Confidence 34444567889999997
No 477
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=31.92 E-value=51 Score=16.24 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=21.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++++|--..+.|-. .+.+.+++. .....++++|
T Consensus 42 ~~~~dlil~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s 79 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDGL---SLIRRWRSN-DVSLPILVLT 79 (121)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHT-TCCSCEEEEE
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHhc-CCCCCEEEEe
Confidence 3579999999766666642 233333332 1244555554
No 478
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=31.70 E-value=90 Score=19.06 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=26.6
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHhC-CceEEEEe
Q psy858 35 VFLDEP--TSGVDPISRHRLWAVLSQIQKT-GQSIVLTS 70 (72)
Q Consensus 35 lllDEP--~~gld~~~~~~i~~~l~~~~~~-g~til~~~ 70 (72)
+-||-| .+.++....+.+.+.+.++.+. .. +++++
T Consensus 39 itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVlt 76 (280)
T 2f6q_A 39 IMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLT 76 (280)
T ss_dssp EEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEE
T ss_pred EEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEe
Confidence 456766 5999999999999999987654 56 55554
No 479
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=31.55 E-value=12 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=17.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~ 60 (72)
-+|++++-||..+|-|..-.+++.+.|..+.
T Consensus 42 ~n~dIvF~dEe~~g~dR~MT~R~k~kL~~La 72 (150)
T 2ibg_E 42 YNRDILFRDEEGTGADRLMSKRCKEKLNVLA 72 (150)
T ss_dssp CCTTEEECC-------CEECHHHHHHHHHHH
T ss_pred CCCCcEecCCCCCCcchHHHHHHHHHHHHHH
Confidence 4789999999988877766666666666553
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=31.44 E-value=33 Score=20.19 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.0
Q ss_pred HHHHHhcCCCEEEEeCC
Q psy858 24 TAMALIGDPPLVFLDEP 40 (72)
Q Consensus 24 ia~~l~~~p~~lllDEP 40 (72)
+..+....|.++++||.
T Consensus 96 ~~~a~~~~~~vl~iDEi 112 (268)
T 2r62_A 96 FETAKKQAPSIIFIDEI 112 (268)
T ss_dssp HHHHHHSCSCEEEESCG
T ss_pred HHHHHhcCCeEEEEeCh
Confidence 44455568999999997
No 481
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.39 E-value=74 Score=19.71 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=21.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 34 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 34 ~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
+++.|.|+.. | ...+.++.++++++|++|-++
T Consensus 111 Ilf~ds~~~~-~---~~~l~~lak~lkk~gI~v~vI 142 (268)
T 4b4t_W 111 VAFVCSPISD-S---RDELIRLAKTLKKNNVAVDII 142 (268)
T ss_dssp EEEECSCCSS-C---HHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEECCCCCC-C---HHHHHHHHHHHHHcCCEEEEE
Confidence 5666888774 3 345666677777778776554
No 482
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.06 E-value=53 Score=16.23 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=21.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEe
Q psy858 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~-~g~til~~~ 70 (72)
..|+++++|--..+.|-. .+.+.+++... ....++++|
T Consensus 44 ~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 44 NKPDLILMDIQLPEISGL---EVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp HCCSEEEEESBCSSSBHH---HHHHHHHHSTTTTTSCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHcCccccCCcEEEEE
Confidence 579999999877666642 23444443211 244555554
No 483
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.02 E-value=24 Score=19.76 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=12.0
Q ss_pred HHHHHHHhCCceEEEEecC
Q psy858 54 AVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 54 ~~l~~~~~~g~til~~~h~ 72 (72)
+.+ ++...+.+|++|+|.
T Consensus 99 ~~l-~~~~~~~~vlvVsH~ 116 (173)
T 2rfl_A 99 SLI-AAQTEVQSVMLVGHN 116 (173)
T ss_dssp HHH-HTCTTCSEEEEEECT
T ss_pred HHH-hCCCCCCeEEEEeCC
Confidence 344 443457799999994
No 484
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=31.00 E-value=54 Score=16.29 Aligned_cols=16 Identities=25% Similarity=0.192 Sum_probs=11.9
Q ss_pred cCCCEEEEeCCCCCCC
Q psy858 30 GDPPLVFLDEPTSGVD 45 (72)
Q Consensus 30 ~~p~~lllDEP~~gld 45 (72)
..|+++++|--..+.|
T Consensus 45 ~~~dlvi~D~~l~~~~ 60 (127)
T 2jba_A 45 PWPDLILLAWMLPGGS 60 (127)
T ss_dssp SCCSEEEEESEETTEE
T ss_pred cCCCEEEEecCCCCCC
Confidence 4689999997655554
No 485
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=30.92 E-value=68 Score=17.40 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=23.4
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHHHHHhC--CceEEEEec
Q psy858 35 VFLDEPTSG-VDPISRHRLWAVLSQIQKT--GQSIVLTSH 71 (72)
Q Consensus 35 lllDEP~~g-ld~~~~~~i~~~l~~~~~~--g~til~~~h 71 (72)
++|+--.+. |++.+...+..+...+... +..|.+..|
T Consensus 5 i~F~~~s~~~l~~~~~~~L~~ia~~l~~~p~~~~i~I~Gh 44 (138)
T 3cyp_B 5 FTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGF 44 (138)
T ss_dssp EECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 345555556 7777777777666655543 466777766
No 486
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=30.84 E-value=30 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=11.8
Q ss_pred CCEEEEeCCCCCCC
Q psy858 32 PPLVFLDEPTSGVD 45 (72)
Q Consensus 32 p~~lllDEP~~gld 45 (72)
.+++++|=|.+|..
T Consensus 331 fD~Vl~D~Pcsg~g 344 (450)
T 2yxl_A 331 ADKVLLDAPCTSSG 344 (450)
T ss_dssp EEEEEEECCCCCGG
T ss_pred CCEEEEcCCCCCCe
Confidence 48899999998874
No 487
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=30.80 E-value=79 Score=18.12 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCceEEEEecC
Q psy858 50 HRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 50 ~~i~~~l~~~~~~g~til~~~h~ 72 (72)
..+.+.+.++.....++++++|+
T Consensus 99 ~~~l~~i~~~~~~~~~vllvGHn 121 (186)
T 4hbz_A 99 DEILAEVAAVPADASTVLVVGHA 121 (186)
T ss_dssp HHHHHHHHTSCTTCSEEEEEECT
T ss_pred HHHHHHHHhccCCCCeeeecccC
Confidence 44566666654557799999995
No 488
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=30.67 E-value=76 Score=17.88 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCceEEEEe
Q psy858 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ---KTGQSIVLTS 70 (72)
Q Consensus 31 ~p~~lllDEP~~gld~~~~~~i~~~l~~~~---~~g~til~~~ 70 (72)
.|+++|+|--..+.|-. .+...+++.. .....||++|
T Consensus 119 ~~dlillD~~lp~~~G~---el~~~lr~~~~~~~~~~piI~ls 158 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGY---EATREIRKVEKSYGVRTPIIAVS 158 (206)
T ss_dssp SCSEEEEESCCSSSCHH---HHHHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCEEEEcCCCCCCCHH---HHHHHHHhhhhhcCCCCcEEEEE
Confidence 79999999777666643 3444444431 1345566555
No 489
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=30.58 E-value=46 Score=18.51 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCceEEEEec
Q psy858 51 RLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 51 ~i~~~l~~~~~~g~til~~~h 71 (72)
...+.|+++.+.|..++++|-
T Consensus 28 ~~~~al~~l~~~G~~iii~Tg 48 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSV 48 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHHCCCEEEEEeC
Confidence 356777777778999998873
No 490
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=30.54 E-value=76 Score=17.87 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=22.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+...+++.. .+..||++|
T Consensus 49 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~~-~~~~ii~lt 86 (233)
T 1ys7_A 49 ENRPDAIVLDINMPVLDGV---SVVTALRAMD-NDVPVCVLS 86 (233)
T ss_dssp HSCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEE
Confidence 4579999999876666643 2333443321 345555554
No 491
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=30.49 E-value=58 Score=16.49 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=20.9
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEe
Q psy858 30 GDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTS 70 (72)
Q Consensus 30 ~~p~~lllDEP~~-gld~~~~~~i~~~l~~~~~~g~til~~~ 70 (72)
..|+++|+|--.. +.+.. .+...+++. .+..||+.|
T Consensus 53 ~~~dlii~d~~~~~~~~g~---~~~~~l~~~--~~~~ii~ls 89 (140)
T 3cg0_A 53 LRPDIALVDIMLCGALDGV---ETAARLAAG--CNLPIIFIT 89 (140)
T ss_dssp HCCSEEEEESSCCSSSCHH---HHHHHHHHH--SCCCEEEEE
T ss_pred CCCCEEEEecCCCCCCCHH---HHHHHHHhC--CCCCEEEEe
Confidence 5799999997664 45532 334444443 345555544
No 492
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=30.41 E-value=1e+02 Score=19.38 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 39 EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 39 EP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
.|...+|+...+.+.+++....+.|.-||+--|
T Consensus 92 ~~~~~~~~~~l~~~~~vv~~a~~~Gi~vildlH 124 (376)
T 3ayr_A 92 APDYKIDEKWLKRVHEVVDYPYKNGAFVILNLH 124 (376)
T ss_dssp TTTCCBCHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred CCCCccCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 344557888888888888777777998888777
No 493
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=30.28 E-value=82 Score=18.13 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=29.7
Q ss_pred cCCCCChHHHHHH------HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy858 10 ESGRYSGGNKRKL------STAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG 63 (72)
Q Consensus 10 ~~~~lS~G~~qr~------~ia~~l~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~~~g 63 (72)
.+.+.|..+.+++ .|..++-.+..+++|||--..+|... +.+.|.+....|
T Consensus 47 ~~~~~s~~~~~~~~~~Eg~~il~~i~~~~~vI~LD~~Gk~~sS~~---fA~~l~~~~~~g 103 (163)
T 4fak_A 47 APENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEG---LAQELNQRMTQG 103 (163)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHTCCTTSEEEEEEEEEEECCHHH---HHHHHHHHHHTT
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHH---HHHHHHHHHhcC
Confidence 3556776643221 22333334456899999988888765 444555554455
No 494
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=30.15 E-value=61 Score=16.63 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=22.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEe
Q psy858 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTS 70 (72)
Q Consensus 29 ~~~p~~lllDEP~~gld~~~~~~i~~~l~~~~-~~g~til~~~ 70 (72)
-..|+++|+|--..+.|-. .+.+.+++.. .....|+++|
T Consensus 46 ~~~~dlvl~D~~lp~~~g~---~~~~~lr~~~~~~~~pii~~t 85 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDGY---TLCKRVRQHPLTKTLPILMLT 85 (136)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHSGGGTTCCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHcCCCcCCccEEEEe
Confidence 4679999999877777642 2333444321 1244555554
No 495
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=30.06 E-value=1.1e+02 Score=19.41 Aligned_cols=56 Identities=11% Similarity=-0.037 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcC-CCEEEE-----e-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 17 GNKRKLSTAMALIGD-PPLVFL-----D-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 17 G~~qr~~ia~~l~~~-p~~lll-----D-EP~~gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
+.+|...+.+..-.+ -++-+- + .+...+|+...+.+.+.+....+.|.-||+--|.
T Consensus 44 ~t~~m~~~i~~~G~N~vRipi~w~~~~~~~~~g~~~~~~l~~ld~vV~~a~~~Gi~vIlDlH~ 106 (340)
T 3qr3_A 44 GIGQMQHFVNEDGMTIFRLPVGWQYLVNNNLGGNLDSTSISKYDQLVQGCLSLGAYCIVDIHN 106 (340)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred cHHHHHHHHHHCCCCEEEEEeeHHHhCCCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 456666665544322 233321 1 3456789999999999998877889999988773
No 496
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=30.01 E-value=7.3 Score=23.87 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHhcC-CCEEEEeCCCC
Q psy858 13 RYSGGNKRKLSTAMALIGD-PPLVFLDEPTS 42 (72)
Q Consensus 13 ~lS~G~~qr~~ia~~l~~~-p~~lllDEP~~ 42 (72)
-+.+|..|--+|..++-.+ ...++.||.++
T Consensus 229 ~vA~G~~Ka~AI~aal~g~~~~~LItDe~aA 259 (264)
T 2r5f_A 229 GLAGGVRKVQAIKGALLGGYLDVLITDVGTA 259 (264)
T ss_dssp EECCCGGGHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred EEEcCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 3577888888887777666 47899998764
No 497
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=29.99 E-value=95 Score=18.79 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=26.4
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhC-CceEEEE
Q psy858 34 LVFLDEPT--SGVDPISRHRLWAVLSQIQKT-GQSIVLT 69 (72)
Q Consensus 34 ~lllDEP~--~gld~~~~~~i~~~l~~~~~~-g~til~~ 69 (72)
.+-|+-|- +.++......+.+.+..+.+. ..-++++
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl 61 (274)
T 3tlf_A 23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVV 61 (274)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36677774 899999999999999887654 4434443
No 498
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=29.95 E-value=93 Score=18.66 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=26.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCceEEEE
Q psy858 34 LVFLDEP--TSGVDPISRHRLWAVLSQIQKTGQSIVLT 69 (72)
Q Consensus 34 ~lllDEP--~~gld~~~~~~i~~~l~~~~~~g~til~~ 69 (72)
.+-|+-| .+.++....+.+.+.+....+...-++++
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~~~vr~vVl 56 (254)
T 3isa_A 19 TFTLSRPEKRNALSAELVEALIDGVDAAHREQVPLLVF 56 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 3566766 58999999999999998875544334433
No 499
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=29.89 E-value=62 Score=18.43 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=19.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec
Q psy858 33 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71 (72)
Q Consensus 33 ~~lllDEP~~gld~~~~~~i~~~l~~~~~~g~til~~~h 71 (72)
..+++|=.. .....+.+.+.+++........|++||
T Consensus 37 ~~iLiD~G~---~~~~~~~~~~~l~~~~g~~i~~vi~TH 72 (223)
T 1m2x_A 37 GVVVIDCPW---GEDKFKSFTDEIYKKHGKKVIMNIATH 72 (223)
T ss_dssp EEEEESCCS---SGGGHHHHHHHHHHHHCCCEEEEECSS
T ss_pred EEEEEeCCC---ChhHHHHHHHHHHHHhCCCeEEEEecc
Confidence 466676433 223334455555543123567789998
No 500
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=29.82 E-value=54 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q psy858 43 GVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72 (72)
Q Consensus 43 gld~~~~~~i~~~l~~~~~~g~til~~~h~ 72 (72)
-.|..-.+.....|+.+.++|..|++.||-
T Consensus 29 Itdd~RI~a~lpTI~~ll~~gakVvl~SHl 58 (410)
T 2cun_A 29 IISDARFKAVLPTIRYLIESGAKVVIGTHQ 58 (410)
T ss_dssp ECCCHHHHHTHHHHHHHHHTTCEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 456666777778888888888889999993
Done!