RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy858
(72 letters)
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 111 bits (281), Expect = 7e-33
Identities = 36/71 (50%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GLT+ ++ + SGG KRKLS A+ALIG P ++ LDEPTSG+DP SR +W ++ +++
Sbjct: 121 LGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180
Query: 61 KTGQSIVLTSH 71
K G+SI+LT+H
Sbjct: 181 K-GRSIILTTH 190
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 91.3 bits (228), Expect = 2e-25
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
RE+ + SGG K++L+ A AL+ DP L+ LDEPTSG+DP SR W +L +++K G++I+L
Sbjct: 91 RENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150
Query: 69 TSH 71
+SH
Sbjct: 151 SSH 153
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 93.5 bits (233), Expect = 4e-25
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + +++ SGG K++LS A+AL+ DP L+ LDEPTSG+DP SR +W +L ++ K
Sbjct: 125 GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 62 TGQ-SIVLTSH 71
G +I+L++H
Sbjct: 185 EGGVTILLSTH 195
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 95.5 bits (237), Expect = 5e-25
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL+ Y R +G YSGGNKRKLSTA+ALIG PPLV LDEPT+G+DP +R LW + I
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
Query: 61 KTGQSIVLTSH 71
+ G+++VLTSH
Sbjct: 2118 REGRAVVLTSH 2128
Score = 72.0 bits (176), Expect = 1e-16
Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL R+ E+ SGG +RKLS A+A +GD +V LDEPTSGVDP SR +W +L + +
Sbjct: 1050 GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-R 1108
Query: 62 TGQSIVLTSH 71
+G++I++++H
Sbjct: 1109 SGRTIIMSTH 1118
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 79.8 bits (198), Expect = 1e-20
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL R R SGG K++++ A L DP ++ LDEPT+G+DP R L +L +++
Sbjct: 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 61 KTGQSIVLTSHR 72
G++I++ +H
Sbjct: 182 AEGKTIIIVTHD 193
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 79.3 bits (196), Expect = 3e-20
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL E R YSGG +R+L A +L+ P ++FLDEPT G+DP +R +W + +++
Sbjct: 119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178
Query: 61 KT-GQSIVLTSH 71
+ G +I+LT+H
Sbjct: 179 EEFGMTILLTTH 190
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 76.9 bits (190), Expect = 7e-20
Identities = 24/58 (41%), Positives = 43/58 (74%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P L+ LDEPTSG+DP SR RL +L ++ + G+++++ +H
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 79.0 bits (195), Expect = 1e-19
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
L E R G YSGG +R+L A +LI P ++FLDEPT+G+DP +R +W + +++
Sbjct: 113 ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE 172
Query: 62 TGQSIVLTSH 71
G +I+LT+H
Sbjct: 173 EGVTILLTTH 182
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 69.9 bits (172), Expect = 1e-16
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
L + ++ G SGG +R++ A AL+GDP ++ +DEPT+G+DP R R +LS++ +
Sbjct: 119 NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178
Query: 62 TGQSIVLTSH 71
+ ++L++H
Sbjct: 179 D-RIVILSTH 187
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 67.9 bits (167), Expect = 6e-16
Identities = 26/71 (36%), Positives = 49/71 (69%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL+E R+ G SGG ++++ A AL+ DP L+ LDEP +GVDP ++ ++ +L +++
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 61 KTGQSIVLTSH 71
+ G +I++ +H
Sbjct: 180 REGMTILVVTH 190
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 68.0 bits (167), Expect = 1e-15
Identities = 23/71 (32%), Positives = 47/71 (66%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ + R R+ G SGG K+++ A AL +P L+ LDEP +GVD + ++ +L +++
Sbjct: 127 VGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 61 KTGQSIVLTSH 71
+ G+++++ +H
Sbjct: 187 QEGKTVLMVTH 197
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 68.7 bits (168), Expect = 1e-15
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG KR+L+ A ALI DP L+ LDEPT+G+DP +RH +W L + G++I+LT+H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 68.3 bits (167), Expect = 1e-15
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
G SGG KR+L+ A AL+ DP ++ LDEPT+G+DP +RH +W L + G++I+LT+H
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 67.3 bits (164), Expect = 3e-15
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG KR+L+ A ALI DP L+ LDEPT+G+DP +RH +W L + G++I+LT+H
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 65.9 bits (162), Expect = 4e-15
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + R +G S G +R+L A AL DP L+ LDEP +G++P L ++ +++
Sbjct: 131 VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR 190
Query: 61 KTGQSIVLTSHR 72
+ G +++L H
Sbjct: 191 ERGITVLLVEHD 202
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 64.5 bits (158), Expect = 9e-15
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + ++ +S G K++L A+AL+G+P L+ LDEPT+G+DP L ++ ++
Sbjct: 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174
Query: 62 TGQSIVLTSH 71
G +++++SH
Sbjct: 175 QGITVLISSH 184
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 64.6 bits (158), Expect = 1e-14
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL E R SGG K++++ A L P ++ LDEPT+G+DP R L +L ++
Sbjct: 126 VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185
Query: 60 QKTGQSIVLTSHR 72
++ G++I++ +H
Sbjct: 186 EEGGKTIIIVTHD 198
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 63.7 bits (156), Expect = 2e-14
Identities = 23/58 (39%), Positives = 43/58 (74%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG ++++S A+ L+ +P L+FLDEPTSG+D S ++ ++L ++ TG++I+ + H+
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 63.4 bits (155), Expect = 5e-14
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL R SGG ++++ A AL + P++ LDEPTS +D + + +L +
Sbjct: 126 LGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185
Query: 61 KT-GQSIVLTSH 71
+ G ++V+ H
Sbjct: 186 REKGLTVVMVLH 197
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 61.7 bits (150), Expect = 2e-13
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L EY R G +S G K+K++ A AL+ DP ++ LDEPTSG+D +R + + Q++
Sbjct: 121 LQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 61 KTGQSIVLTSH 71
G++++ +SH
Sbjct: 181 NEGRAVIFSSH 191
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 61.4 bits (150), Expect = 2e-13
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL E R +G S G +R+L A AL P L+ LDEP +G++P L ++ +++
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 61 KT-GQSIVLTSHR 72
G +I+L H
Sbjct: 197 DRGGVTILLIEHD 209
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 60.1 bits (147), Expect = 5e-13
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L E R + +G SGG ++ L+ A AL+ P L+ LDEP+ G+ P ++ + +++
Sbjct: 122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 63 GQSIVL 68
G +I+L
Sbjct: 182 GVTILL 187
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 60.4 bits (147), Expect = 5e-13
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
L+EY ++ S GN++K+ A+I DP L+ LDEP SG+DP++ L V+ ++ +
Sbjct: 117 ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 62 TGQSIVLTSHR 72
G++++L++H+
Sbjct: 177 AGKTVILSTHQ 187
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 59.8 bits (146), Expect = 5e-13
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL R SGG ++++ A AL +PP++ LDEPTS +D + L +L ++
Sbjct: 85 LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
Query: 60 QKTGQSIVLTSH 71
++ G+++V+ H
Sbjct: 145 RERGKTVVMVLH 156
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 59.7 bits (145), Expect = 7e-13
Identities = 24/71 (33%), Positives = 47/71 (66%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G + R R + SGG K++++ A A+ P ++ LDEPT+G+DP R ++ A+L +++
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 61 KTGQSIVLTSH 71
G ++V+++H
Sbjct: 175 AEGMTVVISTH 185
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 58.9 bits (144), Expect = 9e-13
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ DPP++ LDE TS +DP + + L + K G+++++ +HR
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHR 154
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 60.4 bits (147), Expect = 1e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L+ A L+ DPPL+F DEPTSG+D + + VL + + G++I+ T H
Sbjct: 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 60.0 bits (146), Expect = 1e-12
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MGL--TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 58
+GL +EY R SGG ++++ A AL DPP++ +DEP +DPI+R +L + +
Sbjct: 121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180
Query: 59 IQKT-GQSIVLTSH 71
+QK G++IV +H
Sbjct: 181 LQKELGKTIVFVTH 194
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 58.8 bits (143), Expect = 2e-12
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L + R SGG K++L+ A AL+ L+ DEPTSG+D + R+ ++ ++
Sbjct: 114 LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 61 KTGQSIVLTSH 71
G+++++ +H
Sbjct: 174 AQGKAVIVITH 184
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 58.2 bits (141), Expect = 3e-12
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
LT +++ ++S G K++L A+AL+ P L+ LDEPT+G+DPI L ++ +
Sbjct: 113 DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172
Query: 62 TGQSIVLTSH 71
G +++L+SH
Sbjct: 173 QGITVILSSH 182
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 58.1 bits (141), Expect = 4e-12
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
LT SGG +R++S A+ L+ DP ++ LDEPTSG+D + L + LSQ+ +
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 62 TGQSIVLTSH 71
+ ++LT H
Sbjct: 192 RNRIVILTIH 201
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 57.4 bits (139), Expect = 6e-12
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ E R G +S G ++K++ A AL+ DPP++ LDEPT+G+D ++ L + Q++
Sbjct: 124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183
Query: 61 KTGQSIVLTSHR 72
G+ I+ ++H
Sbjct: 184 ALGKCILFSTHI 195
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 56.4 bits (137), Expect = 8e-12
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
SGG +++++ A AL DP ++ LDEPTS +DPI+R + A+L +Q G ++VL +H
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 56.8 bits (138), Expect = 1e-11
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
+T R ++ SGG +R++ A AL +P + LDEP +GVDPI+ + ++ ++
Sbjct: 122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 62 TGQSIVLTSH 71
G +++T H
Sbjct: 182 RGIGVLITDH 191
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 56.8 bits (138), Expect = 1e-11
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL + + + SGG +++++ A AL P L+ LDEP +D ++R L L ++
Sbjct: 118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177
Query: 60 QKTGQSIVLTSH 71
++T ++++L +H
Sbjct: 178 EETRKTVLLVTH 189
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 56.7 bits (137), Expect = 2e-11
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
SGG RK++ L +P ++ LDEPT+G+DP S+ ++ +L +Q ++I+L SH
Sbjct: 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 56.2 bits (136), Expect = 2e-11
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G 63
E+ R SGG ++++ A AL DPPL+ +DEP +DPI+R +L ++Q+ G
Sbjct: 127 EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186
Query: 64 QSIVLTSH 71
++IV +H
Sbjct: 187 KTIVFVTH 194
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 56.4 bits (136), Expect = 2e-11
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL EY HR SGG ++++ A AL +P ++ +DE S +DP+ R + L ++Q
Sbjct: 117 VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQ 176
Query: 61 KT-GQSIVLTSH 71
T ++IV +H
Sbjct: 177 ATLQKTIVFITH 188
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 56.0 bits (136), Expect = 3e-11
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL SGG K++++ A AL DP L+ DEPT+G+DPI+ + ++ ++K
Sbjct: 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184
Query: 62 T-GQSIVLTSH 71
G + ++ +H
Sbjct: 185 ELGLTSIMVTH 195
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 55.8 bits (135), Expect = 3e-11
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+G R G S G +R++ A AL+ DP L+ LDEP G+D I+R +L L ++
Sbjct: 159 LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218
Query: 60 -QKTGQSIVLTSHR 72
+++ +H
Sbjct: 219 ASPGAPALLFVTHH 232
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 54.8 bits (133), Expect = 6e-11
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
GL+ + + + SGG +++++ A AL DP ++ LDEP S +D ++R +L L I +
Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179
Query: 61 KTGQSIVLTSH 71
+TG++++L +H
Sbjct: 180 ETGKTVLLVTH 190
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 54.1 bits (131), Expect = 6e-11
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++L A AL G+P ++ LDEP S +D L ++ ++ G + ++ +HR
Sbjct: 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 54.7 bits (132), Expect = 1e-10
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
+ + ++ S GN++K+ A+I +P L+ LDEP SG+DP++ L + ++++
Sbjct: 119 EIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 62 TGQSIVLTSHR 72
G +I+ +SHR
Sbjct: 179 EGATIIFSSHR 189
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 54.7 bits (131), Expect = 1e-10
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 MGLT-EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
+GL E+ + SGG R+++ A L +P ++ LDEPT+G+DP +R + + I
Sbjct: 131 VGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190
Query: 60 QKTGQSIVLTSH 71
++GQ++VL +H
Sbjct: 191 HQSGQTVVLVTH 202
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 54.1 bits (130), Expect = 1e-10
Identities = 22/71 (30%), Positives = 47/71 (66%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + E+RHR+ G SGG K+++ A A+ ++ LDEP +GVD + R+ ++L +++
Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 61 KTGQSIVLTSH 71
G+++++++H
Sbjct: 190 DEGKTMLVSTH 200
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 54.0 bits (131), Expect = 2e-10
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK- 61
L E R++ +G SGG ++ L+ A AL+ P L+ LDEP+ G+ P ++ + +++K
Sbjct: 126 LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 62 TGQSIVL 68
G +I+L
Sbjct: 186 GGMTILL 192
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 53.6 bits (130), Expect = 2e-10
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + + SGG +++++ A AL DP ++ DEPT +D + + +L ++
Sbjct: 128 VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187
Query: 61 K-TGQSIVLTSH 71
K G +IV+ +H
Sbjct: 188 KEAGTTIVVVTH 199
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 54.3 bits (131), Expect = 2e-10
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
R SGG +R+L+ A AL+ D PL LDEPT G+DPI+ ++ A+L + G+++++ +HR
Sbjct: 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHR 532
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 53.3 bits (129), Expect = 2e-10
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL +R SGG +++++ A AL +P L+ LDEP S +D R L L ++Q
Sbjct: 118 VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 61 K-TGQSIVLTSH 71
+ G + + +H
Sbjct: 178 RELGITTIYVTH 189
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 52.7 bits (127), Expect = 3e-10
Identities = 22/60 (36%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
R+SGG +++L+ A L+ D P+V LDEPT G+DPI+ +L +++ ++ K ++++ +H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHH 156
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 52.7 bits (127), Expect = 3e-10
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ +R+ SGG +++++ A AL+ +P ++ LDEP S +D ++ +L L +I+
Sbjct: 117 LGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176
Query: 61 K 61
K
Sbjct: 177 K 177
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 53.0 bits (128), Expect = 4e-10
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++L+ A AL+ P ++ LDE TS +DP + + L QI G+++++ +HR
Sbjct: 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHR 667
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 53.0 bits (128), Expect = 4e-10
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71
SGG ++++ AMAL +P L+ DEPT+ +D + ++ +L ++Q+ G +++L +H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 53.2 bits (128), Expect = 4e-10
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
+ S G + + A AL+ P ++FLDEPT G+D ++ + L + ++ +++LT+H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 53.0 bits (128), Expect = 4e-10
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL++ R + SGG K++++ A AL +P ++ DE TS +DP + + +L I +
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 62 T-GQSIVLTSH 71
G +IVL +H
Sbjct: 190 ELGLTIVLITH 200
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 52.6 bits (127), Expect = 4e-10
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
SGG +++++ A A+ DP L+FLDEPTSG+DPIS + ++ ++ G ++++ +H
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 52.2 bits (126), Expect = 5e-10
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL ++ SGG +++++ A A++ PPL+ DEPT +DP +R + +L ++
Sbjct: 122 VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 61 KTGQSIVLTSH 71
G++I++ +H
Sbjct: 182 DEGKTIIIVTH 192
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 52.1 bits (126), Expect = 6e-10
Identities = 17/58 (29%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
SGG +++++ A ALI +P ++ DEPT +D + + +L ++ ++ G++I++ +H
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 52.1 bits (126), Expect = 7e-10
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK- 61
L Y H SGG +++++ A AL +P L+ DEPTS +D + ++ +L ++Q+
Sbjct: 139 LNRYPHE----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE 194
Query: 62 TGQSIVLTSH 71
G +++ +H
Sbjct: 195 LGLTLLFITH 204
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 52.1 bits (125), Expect = 7e-10
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL R G SGG +++++ A L+ D P++ LDEP + +DP R + ++ +
Sbjct: 116 VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175
Query: 60 QKTGQSIVLTSH 71
+T ++++ +H
Sbjct: 176 AETKMTVLMVTH 187
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 52.0 bits (125), Expect = 1e-09
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
Y R SGG KR+++ A L +P + DEPT+G+DP + + + K G+
Sbjct: 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK 216
Query: 65 SIVLTSH 71
+I+L +H
Sbjct: 217 TIILVTH 223
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 51.7 bits (124), Expect = 1e-09
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL E R R SGG K++++ A + +P ++ LDEPT+G+DP L L+ +
Sbjct: 125 LGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP 184
Query: 61 KT-GQSIVLTSH 71
+T G +++ ++H
Sbjct: 185 ETYGMTVIFSTH 196
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 51.7 bits (124), Expect = 1e-09
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG R+++ A L +P ++ LDEPT+G+DP R L + ++ ++G +IVL +H
Sbjct: 147 SGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 51.4 bits (124), Expect = 2e-09
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
SGG ++++ AMAL P L+ DEPT+ +D ++ ++ +L +Q + G +++ +H
Sbjct: 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213
Score = 47.6 bits (114), Expect = 4e-08
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTG 63
E+ R SGG +++++ A AL +P L+ LDEP S +D + ++ +L +Q + G
Sbjct: 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG 480
Query: 64 QSIVLTSH 71
+ + SH
Sbjct: 481 LTYLFISH 488
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 51.4 bits (123), Expect = 2e-09
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG R+++ A + +P ++ LDEP +G+DP R + + QK G +++L +H
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 50.8 bits (122), Expect = 2e-09
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL Y + SGG ++++ A AL DP ++ +DE S +DP+ R + L ++Q
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 62 T-GQSIVLTSH 71
++IV +H
Sbjct: 213 KLKKTIVFITH 223
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 51.0 bits (123), Expect = 3e-09
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 10 ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS----RHRLWAVLSQIQKTGQ 64
E GR SGG ++ ++ A AL+ DPP++ LDEPTS +D S + RL L+ G+
Sbjct: 597 ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-----GK 651
Query: 65 SIVLTSHR 72
++VL +HR
Sbjct: 652 TLVLVTHR 659
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 50.3 bits (121), Expect = 3e-09
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
GL + + SGG K+++ A AL +P ++ DE TS +DP + + A+L I +
Sbjct: 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 61 KTGQSIVLTSH 71
+ G +IVL +H
Sbjct: 189 ELGLTIVLITH 199
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 50.6 bits (121), Expect = 3e-09
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG ++++S A ++ +P L+ LDEPTSG+D + +RL L + + G++IV + H+
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ 265
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 50.2 bits (120), Expect = 4e-09
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL ++ R+ G SGG ++++ A A + P++ +DEP S +DP+ R +L L ++Q
Sbjct: 153 GLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212
Query: 62 T-GQSIVLTSH 71
++IV SH
Sbjct: 213 KLKKTIVFVSH 223
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 50.4 bits (121), Expect = 4e-09
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL GDP LV LDEP S +D L + ++ G ++V+ +HR
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 49.9 bits (119), Expect = 4e-09
Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+G+ +Y R + SGG +++++ A L+ P++ LDEP S +DP+ R + A++ Q+
Sbjct: 116 VGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175
Query: 60 QKTGQSIVLTSH 71
+ +++++ +H
Sbjct: 176 SERQRTLLMVTH 187
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 49.5 bits (119), Expect = 5e-09
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
+T R ++ SGG +R++ A AL +P + LDEP +GVDPI+
Sbjct: 128 HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 49.7 bits (119), Expect = 6e-09
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ + ++ SGG K++++ A L P ++ LDEPTSG+DP+ ++ +L + K
Sbjct: 126 GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185
Query: 62 TGQSIVLTSH 71
G +I++++H
Sbjct: 186 EGITIIISTH 195
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 49.6 bits (119), Expect = 6e-09
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + H+ SGG ++++ A AL DP ++ +DE S +DP+ R + L ++Q
Sbjct: 148 VGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207
Query: 61 -KTGQSIVLTSH 71
+ ++IV +H
Sbjct: 208 AELQKTIVFITH 219
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 49.2 bits (118), Expect = 7e-09
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + SGG +++++ A A++ PPL+ DEPT +DP R+ +L ++
Sbjct: 125 VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN 184
Query: 61 KTGQSIVLTSH 71
K G ++++ +H
Sbjct: 185 KRGTTVIVATH 195
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 49.5 bits (118), Expect = 7e-09
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +R++ A AL +P + LDEP +GVDPIS + ++ ++ +G +++T H
Sbjct: 139 SGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 49.6 bits (118), Expect = 7e-09
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 6 YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS 65
+RH+ S G K++++ A AL+ + LDEPT+G+DP R ++ A++ +I G
Sbjct: 129 FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 66 IVLTSH 71
++++SH
Sbjct: 189 VIISSH 194
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 49.0 bits (117), Expect = 9e-09
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
GL H+ + SGG ++++ A AL +P L+ LDEP +D ++R ++ +L + Q
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 61 KTGQSIVLTSH 71
+TG+ ++L +H
Sbjct: 181 ETGKQVLLITH 191
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 48.8 bits (117), Expect = 9e-09
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQ 60
GL E + +GG++R++ A AL+ P L+ LDEPT G+DP SR + A + +
Sbjct: 121 GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALAR 180
Query: 61 KTGQSIVLTSH 71
G S++ +H
Sbjct: 181 DQGLSVLWATH 191
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 49.3 bits (118), Expect = 9e-09
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
E RHR +SGG +++++ A ALI P L+ LDEPTS +D + ++ A+L +Q+ Q
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476
Query: 65 -SIVLTSH 71
+ + SH
Sbjct: 477 LAYLFISH 484
Score = 33.9 bits (78), Expect = 0.003
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
LT+Y H+ SGG ++++ AMAL+ P L+ DEPT+ +D
Sbjct: 150 LTDYPHQ----LSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 48.7 bits (116), Expect = 1e-08
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L E R + +G SGG ++ L+ AL+ P L+ LDEP+ G+ PI +++ + Q+++
Sbjct: 127 LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 63 GQSIVL 68
G +I L
Sbjct: 187 GMTIFL 192
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 48.7 bits (116), Expect = 1e-08
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GLTE R G SGG ++++ A AL P ++ LDEP +G+D ++ L + ++
Sbjct: 102 GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161
Query: 62 TGQSIVLTSH 71
G +I++T+H
Sbjct: 162 AGTAILMTTH 171
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 48.9 bits (117), Expect = 1e-08
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL E H SGG +++++ A AL P L+ DEPTS +DP RH + V+ + +
Sbjct: 125 GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 62 TGQSIVLTSH 71
G ++V+ +H
Sbjct: 185 EGMTMVIVTH 194
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 48.4 bits (116), Expect = 1e-08
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 9 RESGRYSG-------GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
RE+ R+S +++L+ + L P ++FLDEPTSG+D + + ++ ++K
Sbjct: 97 REALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA---YNIVRFLKK 153
Query: 62 ---TGQSIVLTSH 71
+GQ+I+ T H
Sbjct: 154 LADSGQAILCTIH 166
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 48.5 bits (116), Expect = 1e-08
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
+SGG +++++ A I D P++ LDEPT+ +D +R + ++++ + G +++ H
Sbjct: 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 48.6 bits (116), Expect = 1e-08
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL +H++ G+ S G ++++ A ALI DP ++ LDEPT+G+DP + V+ I K
Sbjct: 122 GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181
Query: 62 TGQSIVLTSH 71
++I+L++H
Sbjct: 182 D-KTIILSTH 190
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 48.3 bits (116), Expect = 2e-08
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP-----ISRHRLWAVLS 57
L E R G SGG +++L+ A AL+ P L+ LDEPT G+ P I R V+
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR-----VIR 175
Query: 58 QIQK-TGQSIVL 68
+++ G +I+L
Sbjct: 176 RLRAEGGMAILL 187
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 46.9 bits (112), Expect = 2e-08
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 1 MGLTEYRHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTS 42
+GL ++ RE SGG K++++ A AL+ P L+ LDEPT+
Sbjct: 77 VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 48.6 bits (116), Expect = 2e-08
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++L+ A AL+ +PP++ LDE TS +D + + L ++ K ++++ HR
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA-HR 523
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 48.1 bits (115), Expect = 2e-08
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL + R G SGG +++++ A L+ + P++ LDEP S +DP R + A++SQ+
Sbjct: 117 VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176
Query: 60 QKTGQSIVLTSH 71
+ ++++ +H
Sbjct: 177 DERKMTLLMVTH 188
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 47.9 bits (114), Expect = 2e-08
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + R + S G +R+++ A L+ PL LDEPT+ +D R ++
Sbjct: 113 VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 61 KTGQSIVLTSH 71
G +VLT+H
Sbjct: 173 ARGGMVVLTTH 183
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 48.3 bits (116), Expect = 2e-08
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 10 ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
E GR SGG +R+L A AL+ D PL+ LDEPT G+D + ++ +L++ + +++++
Sbjct: 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLM 529
Query: 69 TSHR 72
+HR
Sbjct: 530 ITHR 533
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 47.9 bits (115), Expect = 2e-08
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + + SGG +++++ A AL +P ++ DEPTS +DP + V+ + +
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 62 TGQSIVLTSH 71
G ++V+ +H
Sbjct: 184 EGMTMVVVTH 193
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.0 bits (114), Expect = 2e-08
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL +P ++ LDEPTS +DPI+ R+ +L ++ + +IV+ +H
Sbjct: 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTH 203
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 47.7 bits (114), Expect = 2e-08
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71
S G + + A AL+ +P ++FLDEPT G+D +++ + L + + G +++LTSH
Sbjct: 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 48.1 bits (115), Expect = 3e-08
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
G SGGN++K++ A L+ P ++ LDEPT GVD ++ ++ +++Q + G SI+L S
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452
Score = 28.8 bits (65), Expect = 0.17
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L + G S G ++ + A L + ++ +DEPT + L+ V+ +++
Sbjct: 129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK 188
Query: 61 KTGQSIVLTSHR 72
G+ IV SHR
Sbjct: 189 SQGRGIVYISHR 200
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 47.6 bits (114), Expect = 3e-08
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L Y +R+ + SGG +++++ A AL+ +P ++ LDEP +D R + L ++Q
Sbjct: 118 VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177
Query: 61 K-TGQSIVLTSH 71
K G + V +H
Sbjct: 178 KELGITFVFVTH 189
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 48.0 bits (114), Expect = 3e-08
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + SGG K++++ A AL +P ++ DE TS +DP + + +L +I
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187
Query: 61 KT-GQSIVLTSH 71
+ G +I+L +H
Sbjct: 188 RRLGLTILLITH 199
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 47.3 bits (113), Expect = 3e-08
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL +R + SGG K++++ A AL P L+ LDEP S +D R +L L QI+
Sbjct: 119 LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIK 178
Query: 61 KT-GQSIVLTSH 71
K ++ +H
Sbjct: 179 KNLNIPVIFVTH 190
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 47.2 bits (113), Expect = 4e-08
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 9 RESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
E GR SGG ++ ++ A AL+ DPP++ LDEPTS +D S RL L Q+ ++++
Sbjct: 135 GERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLI 193
Query: 68 LTSHR 72
+ +HR
Sbjct: 194 IITHR 198
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 47.3 bits (113), Expect = 5e-08
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG ++L+ A A + D PL+ LDEPT+ +D + + L + + G++++L +HR
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHR 516
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 47.3 bits (113), Expect = 5e-08
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 10 ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
E G SGG ++L+ A AL+ L+ LDEPT+ +D + + L ++ K +++++
Sbjct: 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLV 510
Query: 69 TSHR 72
+HR
Sbjct: 511 ITHR 514
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 47.1 bits (112), Expect = 5e-08
Identities = 22/59 (37%), Positives = 41/59 (69%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
GR SGGN++K A L+ +P ++ LDEPT GVD +++ ++ +++Q+ + G +I++ S
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460
Score = 29.8 bits (67), Expect = 0.079
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
R G Y GG ++ + A AL L+ LDEP+S + L ++ ++ G + V
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 69 TSHR 72
SH+
Sbjct: 197 ISHK 200
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 46.9 bits (112), Expect = 5e-08
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 2 GLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
GL E R SGG R+++ A L +P ++ LDEPT+G+DP R + + ++
Sbjct: 133 GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192
Query: 61 KT-GQSIVLTSH 71
K G + VL +H
Sbjct: 193 KEKGLTTVLVTH 204
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 47.0 bits (112), Expect = 5e-08
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
+ ++R + S G K++++ A L DP ++ LDEP + +DP + L +L ++
Sbjct: 127 RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186
Query: 62 TGQSIVLTSH 71
G+++++ +H
Sbjct: 187 QGKTVIVATH 196
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 47.3 bits (112), Expect = 5e-08
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
H + SGG +++L A L P ++ LDEP S +DPIS ++ +++++++ SI+
Sbjct: 159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSII 217
Query: 68 LTSH 71
+ +H
Sbjct: 218 IVTH 221
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 47.0 bits (112), Expect = 6e-08
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
GL R + SGG ++++ A AL +P L+ LDEP +D +R ++ +L ++ Q
Sbjct: 117 GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176
Query: 61 KTGQSIVLTSH 71
+TG+ ++L +H
Sbjct: 177 ETGKQVLLITH 187
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 46.6 bits (111), Expect = 6e-08
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++++ A A++ P ++ DEPT +DP + + +L +I K G ++V+ +H
Sbjct: 138 SGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 46.8 bits (111), Expect = 7e-08
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
MGL + Y R SGG KR+++ A L P ++ DEPT+G+DP H + ++
Sbjct: 163 MGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA 222
Query: 60 QKTGQSIVLTSH 71
+ +++ + +H
Sbjct: 223 KANNKTVFVITH 234
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 46.5 bits (111), Expect = 8e-08
Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL E+ +R++G + G +R+L A ++ P ++ LDEP +G++P L ++++++
Sbjct: 141 VGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELR 200
Query: 61 KT-GQSIVLTSH 71
+++L H
Sbjct: 201 NEHNVTVLLIEH 212
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 46.4 bits (110), Expect = 8e-08
Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A + +P ++ +DEPTS +DPI+ H++ ++ +++K +IV+ +H
Sbjct: 147 SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTH 202
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 46.6 bits (111), Expect = 9e-08
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR----HRLWAVLSQIQKTGQSIVL 68
R SGG +++L+ A AL+ D P++ LDEPT +D + L A LS G+++VL
Sbjct: 471 RLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS-----GRTVVL 525
Query: 69 TSHR 72
+H
Sbjct: 526 ITHH 529
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 45.8 bits (109), Expect = 9e-08
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GLT + + + S G +R+L+ A + PL LDEPT+ +D L +L
Sbjct: 115 VGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174
Query: 61 KTGQSIVLTSH 71
G ++LT+H
Sbjct: 175 ARGGIVLLTTH 185
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 46.0 bits (110), Expect = 1e-07
Identities = 22/57 (38%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL +P ++ LDEPTS +DPIS ++ ++++++K +IV+ +H
Sbjct: 143 SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTH 198
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 46.2 bits (110), Expect = 1e-07
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
SGG KR+++ A + +P ++ LDEPT+G+DP R + + ++ K +I+L SH
Sbjct: 146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH 203
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 46.1 bits (110), Expect = 1e-07
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL GDP LV LDEP S +D L A + + G ++V+ +HR
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 46.1 bits (110), Expect = 1e-07
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
+ R SGG +++++ A ALI +P L+ LDEPTS +D + ++ +L +++K
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192
Query: 65 -SIVLTSH 71
+ + SH
Sbjct: 193 LTYLFISH 200
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 46.1 bits (110), Expect = 1e-07
Identities = 20/59 (33%), Positives = 40/59 (67%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
R SGGN++K A L+ +P ++ LDEPT G+D +++ ++ +++Q+ + G +I++ S
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462
Score = 25.3 bits (56), Expect = 3.4
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
G G ++ + A AL L+ LDEPT+ + L ++ ++ G + + SH
Sbjct: 142 GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISH 201
Query: 72 R 72
+
Sbjct: 202 K 202
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 45.6 bits (109), Expect = 1e-07
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + + SGG +++++ A AL DP ++ DEPTS +DP + V+ + +
Sbjct: 125 GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184
Query: 62 TGQSIVLTSH 71
G ++++ +H
Sbjct: 185 EGMTMIIVTH 194
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 45.9 bits (109), Expect = 2e-07
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 19 KRKLSTAMALIGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSH 71
+++L+ + L+ P L+FLDEPTSG+D + W++ ++K GQ+I+ T H
Sbjct: 907 RKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA---WSICKLMRKLADHGQAILCTIH 960
Score = 30.1 bits (68), Expect = 0.054
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG ++++S A A +G + D T G+D
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 45.3 bits (108), Expect = 2e-07
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ DPP++ LDE TS +D S + A L ++ K + V+ +HR
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVI-AHR 196
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.3 bits (107), Expect = 2e-07
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
+G+ SGG +++L A AL P ++ DEPT+ +DP + ++ ++ +++K +IVL +
Sbjct: 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVT 202
Query: 71 H 71
H
Sbjct: 203 H 203
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 44.4 bits (106), Expect = 2e-07
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K +L+ A L+ +P L+ LDEPT+ +D S L L + T ++L SH
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGT---VILVSH 125
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 45.5 bits (107), Expect = 2e-07
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALI---GDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
L S G KR L+ +AL+ L+ +DEP +G+ P +L +L ++
Sbjct: 179 LLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKEL 238
Query: 60 QKTGQSIVLTSH 71
+ G ++ T+H
Sbjct: 239 SEKGAQLIFTTH 250
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 45.4 bits (108), Expect = 2e-07
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G RK AL+ +P L+ LDEP G+D SR +L +L+ + ++G ++VL +R
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194
Score = 36.1 bits (84), Expect = 4e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR 49
S G +R AL+ P L+ LDEP G+DP++R
Sbjct: 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNR 437
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 45.4 bits (107), Expect = 2e-07
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL P L+ LDEPTS +DPIS + +L ++ S+++ +H
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN-LSMIMVTH 199
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 45.3 bits (108), Expect = 2e-07
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
G+ + ++ + SGG +++++ A AL+ P ++ DEP + +DP S ++ +L I Q
Sbjct: 136 GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQ 195
Query: 61 KTGQSIVLTSH 71
+ G ++++ H
Sbjct: 196 EDGITVIVNLH 206
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.0 bits (106), Expect = 3e-07
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
R + +SGG ++++ A AL P +V LDEPTS +DPIS + L +++ I++
Sbjct: 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMV 202
Query: 69 T 69
T
Sbjct: 203 T 203
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 45.0 bits (107), Expect = 3e-07
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ +Y +E SGG K++++ A L +P ++ DE TS +DP + + ++ ++K
Sbjct: 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190
Query: 62 TG 63
T
Sbjct: 191 TR 192
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 45.1 bits (106), Expect = 3e-07
Identities = 22/69 (31%), Positives = 41/69 (59%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + +++ RE R SGG K++++ A + P ++ LDE TS +DP R + V+ +I+
Sbjct: 128 VNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK 187
Query: 61 KTGQSIVLT 69
+ Q VL+
Sbjct: 188 EKYQLTVLS 196
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 44.8 bits (106), Expect = 3e-07
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRH--RLWAVLSQI 59
GL H++ SGG + +++ AL+ P + LDEP S +D R R W V S++
Sbjct: 123 GLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW-VFSEV 181
Query: 60 QKTGQSIVLTSH 71
+ G V +H
Sbjct: 182 RAAGIPTVQVTH 193
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 44.8 bits (106), Expect = 3e-07
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GLTE + G+ SGG K++++ A AL P ++ LDEP +D ++R L L QI
Sbjct: 102 VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161
Query: 60 QKTGQSIVLTSH 71
++ ++++ +H
Sbjct: 162 EEHRVTVLMVTH 173
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 44.9 bits (107), Expect = 3e-07
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G G S G ++ L+ A A++ DP ++ LDE TS +D + + L ++ K
Sbjct: 128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK 187
Query: 62 TGQSIVLTSHR 72
SI++ +HR
Sbjct: 188 GRTSIII-AHR 197
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 44.9 bits (107), Expect = 3e-07
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A A++ +PP++ LDE TS +D + + A L + K +IV+ HR
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA-HR 195
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 44.8 bits (106), Expect = 3e-07
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
EY R+ SGG +++S A L +P ++ LDEPTS +DP S
Sbjct: 123 EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 44.9 bits (106), Expect = 3e-07
Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
+ + + SGG +++L A + P ++ +DEPTS +DPIS ++ ++ +++K +IV
Sbjct: 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE-YTIV 200
Query: 68 LTSH 71
+ +H
Sbjct: 201 IVTH 204
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 45.1 bits (106), Expect = 3e-07
Identities = 19/57 (33%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ +P ++ +DEPTS +DPI+ ++ ++ +++K SI++ +H
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTH 282
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 44.6 bits (106), Expect = 3e-07
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
GL + ++ + + SGG +++++ A AL P L+ DEP + +DP + ++ L +I +
Sbjct: 134 GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK 193
Query: 61 KTGQSIVLTSH 71
+ G ++++ H
Sbjct: 194 EDGITVIINLH 204
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 44.6 bits (105), Expect = 3e-07
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL DP ++ DEPTS +DPI+ + ++S + K +I++ +H
Sbjct: 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTH 218
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 44.7 bits (106), Expect = 4e-07
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
E SGG K++++ A AL+ D ++ LDE TS +D I+ ++ L +Q ++I+
Sbjct: 608 EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFV 665
Query: 70 SHR 72
+HR
Sbjct: 666 AHR 668
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 44.6 bits (106), Expect = 4e-07
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
H + SGG +++L A AL +P ++ LDEPTS +DPI+ ++ ++ ++ K +IV
Sbjct: 139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIV 197
Query: 68 LTSH 71
+ +H
Sbjct: 198 IVTH 201
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 44.8 bits (106), Expect = 4e-07
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
G +K+ A+AL P L+ DEPT+ ++P ++ +++ +LS++ Q + +I+L SH
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 44.7 bits (106), Expect = 4e-07
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ +++ RE R SGG K++++ A A+ P ++ LDE TS +DP R L + I+
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188
Query: 62 TGQSIVLT 69
Q V++
Sbjct: 189 DYQMTVIS 196
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 44.6 bits (105), Expect = 4e-07
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ P ++ +DEP S +DPIS ++ ++ +++K +IV+ +H
Sbjct: 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD-YTIVIVTH 203
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 44.4 bits (106), Expect = 4e-07
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGGN++K+ A L DP ++ LDEPT G+D ++ ++ ++ ++ G++I++ S
Sbjct: 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458
Score = 41.0 bits (97), Expect = 7e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
G S ++ + A AL D ++ LDEPT+ + RL+ ++ +++ G +I+ SH
Sbjct: 144 GDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203
Query: 72 R 72
R
Sbjct: 204 R 204
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 44.6 bits (105), Expect = 4e-07
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 1 MGLTEYRHRESGRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
+G+ E R G+Y SGG ++++S A AL +P ++ DEPTS +DP + ++
Sbjct: 139 VGIDE---RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 57 SQIQKTGQSIVLTSH 71
Q+ + G+++V+ +H
Sbjct: 196 QQLAEEGKTMVVVTH 210
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 44.5 bits (106), Expect = 4e-07
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + ++ + + SGG +++++ A AL+ P L+ DEP + +DP S ++ +L +I +
Sbjct: 133 GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR 192
Query: 62 TGQSIVLTS 70
V+ S
Sbjct: 193 EEGITVIVS 201
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 44.4 bits (105), Expect = 4e-07
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL P ++ +DEPT+ +DP+ ++ +L ++ K +IVL +H
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTH 206
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.2 bits (104), Expect = 5e-07
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG +++L A AL +P ++ +DEPTS +DP S R+ +++ ++K I++T
Sbjct: 150 SGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVT 204
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 44.2 bits (105), Expect = 5e-07
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ D P++ LDE TS +D S + A L ++QK S+V+ +HR
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHR 538
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 43.7 bits (104), Expect = 6e-07
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++++ A A++ P ++ DEPT +DP + + +I + G ++++ +H
Sbjct: 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 44.1 bits (104), Expect = 7e-07
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A L +P ++ +DEPTS +DPIS ++ ++ +++K SI++ +H
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTH 224
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 44.0 bits (104), Expect = 7e-07
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ +Y E SGG K++++ A L +P ++ LDE TS +DP + ++ ++ +++
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190
Query: 61 KTGQ-SIVLTSH 71
K +++ +H
Sbjct: 191 KKNNLTVISITH 202
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 43.9 bits (104), Expect = 7e-07
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGGN++K+ A L P L+ +DEPT GVD +R+ ++ ++ I +++ S
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460
Score = 36.2 bits (84), Expect = 4e-04
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
L+ D ++ LDEPT+ + P RL++ + ++ G IV SH+
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK 199
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 43.6 bits (104), Expect = 7e-07
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGGN++K+ A L DP ++ LDEPT GVD ++ ++ ++ ++ G++++L S
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 43.1 bits (102), Expect = 7e-07
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 15 SGGNKRKLSTAMAL----IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLT 69
SGG K + A+ L + PL LDE G+DP L A+L + K Q IV+T
Sbjct: 79 SGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.9 bits (104), Expect = 8e-07
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ ++ +RE R SGG K++++ A L P ++ LDE TS +DP R + + Q+++
Sbjct: 129 GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188
Query: 62 TGQSIVLT 69
VL+
Sbjct: 189 QKGITVLS 196
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 43.7 bits (104), Expect = 8e-07
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + R +G S G K+ L M L+ DP L+ LDEP +G+ + +L +
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG 191
Query: 62 TGQSIVLTSH 71
S+V+ H
Sbjct: 192 -KHSVVVVEH 200
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.7 bits (103), Expect = 8e-07
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
H ++ SGG +++L A AL +P ++ +DEPTS +DP+S ++ ++ ++ K +IV
Sbjct: 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIV 208
Query: 68 LTSH 71
+ +H
Sbjct: 209 IVTH 212
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.5 bits (103), Expect = 8e-07
Identities = 21/57 (36%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL +P ++ +DEPTS +DPIS ++ ++ +++K +IV+ +H
Sbjct: 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-YTIVIVTH 203
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.8 bits (103), Expect = 8e-07
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A L P ++ DEPTS +DPIS R+ ++ ++K +IV+ +H
Sbjct: 156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTH 211
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 43.4 bits (103), Expect = 9e-07
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL G+ S G +R+++ A + PL LDEP + +D L A+++
Sbjct: 119 GLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178
Query: 62 TGQSIVLTSH 71
G ++LT+H
Sbjct: 179 QGGIVLLTTH 188
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 43.5 bits (103), Expect = 9e-07
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ- 60
G+ EYR SGG K++++ A L P + DEPT+ +DP R V++ I+
Sbjct: 133 GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE---VVNTIKE 189
Query: 61 ---KTGQSIVLTSH 71
K G +I+L +H
Sbjct: 190 LNKKYGITIILITH 203
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 42.8 bits (102), Expect = 9e-07
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G ++ + A AL + L+ LDEPT+ + P RL+ V+ +++ G +++ SHR
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 43.4 bits (103), Expect = 1e-06
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
MG+ + R G+ SGG +++++ A L+ + P++ LDEP S +DP R + ++SQ+
Sbjct: 117 MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176
Query: 61 KTGQ-SIVLTSH 71
+ Q ++++ SH
Sbjct: 177 QERQLTLLMVSH 188
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 43.2 bits (102), Expect = 1e-06
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A ALI +P ++ LDE TS +D S ++ L +++++ +HR
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHR 208
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 43.3 bits (102), Expect = 1e-06
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ + + + S G K++++ A L+ +P ++ LDEPT+G+DP+ + +L ++QK
Sbjct: 130 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 62 -TGQSIVLTSH 71
G +I++ +H
Sbjct: 190 ELGLTIIIATH 200
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.5 bits (102), Expect = 1e-06
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ +P ++ LDEP S +DPI+ R+ ++ +++K +I L +H
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIALVTH 206
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 43.2 bits (102), Expect = 1e-06
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + + + SGG ++++S A AL+ ++ DEPT +D S + A+L Q++
Sbjct: 132 LGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 61 KTGQSIVLTSH 71
G ++++ +H
Sbjct: 192 DRGHTVIIVTH 202
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 43.1 bits (101), Expect = 2e-06
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A L +P ++ +DEPTS +DPIS ++ ++ + K +I++ +H
Sbjct: 152 SGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTH 207
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 43.1 bits (101), Expect = 2e-06
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL +YRHR SGG + ++ A L +P + DE TS +DP S + + ++
Sbjct: 124 IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183
Query: 61 KTGQSIVLTSH 71
+ G++IV +H
Sbjct: 184 EKGKTIVYITH 194
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 42.7 bits (101), Expect = 2e-06
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
SGG +++++ A AL +P ++ LDEP +D R L L ++ + G + V +H
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 42.8 bits (101), Expect = 2e-06
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L+ A AL+ D P++ LDE TS +D S + A L ++ + ++V+ +H
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI-AH 526
Query: 72 R 72
R
Sbjct: 527 R 527
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.7 bits (100), Expect = 2e-06
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
H + SGG ++++ A L P ++ LDEPTS +DPIS ++ +L ++ + +I+
Sbjct: 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTII 201
Query: 68 LTSH 71
L +H
Sbjct: 202 LVTH 205
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 42.8 bits (101), Expect = 2e-06
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+ E SGG +++++ A AL +P ++ DEPTS +DP + V+ + +
Sbjct: 141 GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE 200
Query: 62 TGQSIVLTSH 71
G+++V+ +H
Sbjct: 201 EGRTMVVVTH 210
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 42.6 bits (101), Expect = 2e-06
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 10 ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
E GR SGG +++L+ A AL+ DPP++ LDE TS +D + ++ A L ++ K G++ +
Sbjct: 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFI 525
Query: 69 TSHR 72
+HR
Sbjct: 526 IAHR 529
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 42.8 bits (101), Expect = 2e-06
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 9 RESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
++SG SGG +++L A A+ P ++ +DEP S +DPIS R+ ++ ++ K +I+
Sbjct: 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTII 204
Query: 68 LTSH 71
+ +H
Sbjct: 205 IVTH 208
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 42.7 bits (101), Expect = 2e-06
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSG 43
GL + R R + S G K+ L M L DP L+ LDEP +G
Sbjct: 136 GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 42.8 bits (101), Expect = 2e-06
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 9 RESGRYSGGNKRK------LSTAMALIGDPPL--VFLDEPTSGVDPISRHRLWAVLSQIQ 60
R SGG + L+ + L G L +FLDEP +D +L +L ++
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870
Query: 61 KTGQSIVLTSH 71
G+ I++ SH
Sbjct: 871 SDGRQIIIISH 881
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 42.2 bits (100), Expect = 2e-06
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + R+ + SGG +++++ A++ +P + +DEP S +D R ++ A L ++Q
Sbjct: 118 LQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ 177
Query: 61 KT-GQSIVLTSH 71
+ G + + +H
Sbjct: 178 QRLGTTTIYVTH 189
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 42.5 bits (100), Expect = 2e-06
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSH 71
S G + +++ A LI +P +V LDEPT +DPI++ + ++L ++ Q+ ++ SH
Sbjct: 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486
Score = 39.8 bits (93), Expect = 3e-05
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR---HRLWAVLSQIQKTGQSIVLTSH 71
SGG K+++ A L +P L DEPT +DP + H A+ ++ +G S+VLTSH
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN--ALEEAVKASGISMVLTSH 227
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 42.3 bits (99), Expect = 2e-06
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSI 66
H+ + SGG +++L A AL P ++ +DEP G+DPI+ ++ +++ ++ ++ ++
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM 204
Query: 67 VLTSH 71
V+ SH
Sbjct: 205 VIVSH 209
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 42.3 bits (99), Expect = 3e-06
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
+ + SGG +++L+ A AL P ++ +DEPTS +D ++ + ++++++ +IV+ S
Sbjct: 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVS 209
Query: 71 H 71
H
Sbjct: 210 H 210
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.4 bits (99), Expect = 3e-06
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
H+ SGG +++L A L +P ++ +DEP S +DP+S R+ ++ ++ K +I
Sbjct: 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIA 200
Query: 68 LTSH 71
+ +H
Sbjct: 201 IVTH 204
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 41.9 bits (99), Expect = 3e-06
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL ++ SGG K++++ A AL+ P LV DEPT+ +D S + ++ ++ +
Sbjct: 130 GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 62 -TGQSIVLTSH 71
G +I++ +H
Sbjct: 190 EQGCTILIVTH 200
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 42.1 bits (99), Expect = 3e-06
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L Y R SGG +++++ A AL+ +P ++ DEPT+ +DP ++ +++ ++ +T
Sbjct: 131 LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET 190
Query: 63 GQSIVLTSH 71
G + V+ +H
Sbjct: 191 GITQVIVTH 199
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 41.9 bits (98), Expect = 4e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL Y H SGG ++++ A AL +P ++ +DE S +DP+ R + L ++Q
Sbjct: 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ 211
Query: 61 -KTGQSIVLTSH 71
K ++IV SH
Sbjct: 212 AKHQRTIVFISH 223
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 42.0 bits (99), Expect = 4e-06
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
G SGGN++K+ L+ P ++ LDEPT G+D ++ ++ +++++ K + I++ S
Sbjct: 390 GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448
Score = 28.2 bits (63), Expect = 0.27
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 25 AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
A A + +V +DEPTS + + L+ ++ ++++ G IV SH+
Sbjct: 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK 193
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 41.6 bits (98), Expect = 5e-06
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ P ++ +DEP S +DPIS +L + ++ K +I++ +H
Sbjct: 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTH 220
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 41.5 bits (98), Expect = 5e-06
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL +R+ + SGG +++++ A AL+ P + LDEP S +D R + + + ++
Sbjct: 121 LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180
Query: 61 KT-GQSIVLTSHR 72
+ G + + +H
Sbjct: 181 ERLGTTTIYVTHD 193
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 41.6 bits (97), Expect = 5e-06
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHR 72
SGG K++++ A AL+ +P ++ LDE TS +D S + + I+ K ++I+ +HR
Sbjct: 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
Score = 40.0 bits (93), Expect = 2e-05
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI-VLT 69
+ + SGG K+++S A A+I +P ++ LDE TS +D S + + ++ ++ I ++
Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636
Query: 70 SHR 72
+HR
Sbjct: 637 AHR 639
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 41.5 bits (98), Expect = 5e-06
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 10 ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
E G SGG +++L A AL+ +P ++ LDE TS +DP + + +++ G + ++
Sbjct: 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI---IDDNLRRRGCTCII 667
Query: 69 TSHR 72
+HR
Sbjct: 668 VAHR 671
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 41.5 bits (98), Expect = 6e-06
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 7 RHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQS 65
R+R +SGG +++++ A ALI P L+ LDEPTS +D + ++ +L +Q K G S
Sbjct: 420 RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479
Query: 66 IVLTSH 71
+ SH
Sbjct: 480 YLFISH 485
Score = 39.2 bits (92), Expect = 3e-05
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
SGG ++++ AMAL +P L+ DEPT+ +D + ++ +L ++Q G +I+ +H
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 40.6 bits (96), Expect = 7e-06
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++L+ A L+ P VFLDE TS +D S RL +++ G +++ HR
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL---YQLLKELGITVISVGHR 147
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 41.0 bits (97), Expect = 7e-06
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ +P ++ LDE TS +D S + L + K G++ ++ +HR
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIAHR 197
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.1 bits (96), Expect = 7e-06
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A + P ++ +DEP S +DPIS ++ ++ ++ K +IV+ +H
Sbjct: 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTH 203
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 41.3 bits (97), Expect = 7e-06
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+G+P ++ DE TS +D S + + +I + G+++++ +HR
Sbjct: 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHR 651
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 41.1 bits (96), Expect = 7e-06
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G 63
+Y R SGG KR+++ A + D + LDEPT G+DP + ++ K
Sbjct: 142 DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK 201
Query: 64 QSIVLTSH 71
+ I++ +H
Sbjct: 202 KRIIMVTH 209
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 40.8 bits (96), Expect = 8e-06
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A A++ D P++ LDE TS +D S + L + K G++ ++ +HR
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHR 534
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 40.9 bits (96), Expect = 9e-06
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG +++L A A+ DP ++ +DEP S +DP++
Sbjct: 182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 40.5 bits (95), Expect = 1e-05
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGGN++K+ + L P ++ DEPT G+D ++ ++ V+ Q+ G+ I++ S
Sbjct: 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS 466
Score = 39.8 bits (93), Expect = 2e-05
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 19 KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
K+ L A L+ D ++ +DEPTS + L+ +++Q++K G +IV SH+
Sbjct: 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK 204
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 40.6 bits (95), Expect = 1e-05
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 19 KRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+++L+ A+ L+ +P ++F+DEPTSG+D + + + TG+++V T H+
Sbjct: 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078
Score = 34.4 bits (79), Expect = 0.002
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGG K++++T ++G +F+DE ++G+D + +++ L QI ++ VL S
Sbjct: 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMS 393
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 40.2 bits (95), Expect = 1e-05
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
H+ + SGG +++L A AL P ++ +DEPTS +DPIS
Sbjct: 144 HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 40.0 bits (94), Expect = 2e-05
Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ +P ++ LDEPTS +DPIS ++ +++++ K+ +IV+ +H
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTH 225
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.1 bits (94), Expect = 2e-05
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG ++++ A L P ++ LDEPTS +DPIS ++ L ++ +++T
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 40.0 bits (94), Expect = 2e-05
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A + P ++ LDEP S +DPIS R+ +++++ K ++V+ +H
Sbjct: 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTH 213
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 39.8 bits (93), Expect = 2e-05
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG +++L A AL +P ++ +DEP S +DPI+ ++ ++ +++ I++T
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVT 205
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 39.8 bits (93), Expect = 2e-05
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A ALI +P ++ DE TS +D S H + + I G+++++ +HR
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHR 196
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 39.7 bits (93), Expect = 2e-05
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
SGG +++ A+AL+ +PP + DEPT+ +D +++ R+ +L ++ Q G I+L +H
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 39.4 bits (92), Expect = 3e-05
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG +++L A L DP ++ +DEP S +DPI+ ++ ++ ++ + +V+T
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT 256
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 39.4 bits (93), Expect = 3e-05
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL++ R + SGG K++++ A AL +P ++ DE TS +DP + + +L I +
Sbjct: 129 GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 62 T-GQSIVLTSH 71
G +IVL +H
Sbjct: 189 ELGLTIVLITH 199
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 39.6 bits (92), Expect = 3e-05
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + + SGG +++++ A A+ +P ++ LDEP S +D R + ++ +
Sbjct: 125 VGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184
Query: 61 K 61
+
Sbjct: 185 E 185
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 39.2 bits (91), Expect = 3e-05
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+G+ + H+ SGG +++++ A AL+ ++ DEP + +DP S + L I
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199
Query: 60 QKTGQSIVLTSHR 72
Q G ++V+T H+
Sbjct: 200 QNDGITVVVTLHQ 212
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 39.1 bits (92), Expect = 3e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+SGG +++L A L+ P LVF+DEPT G+D
Sbjct: 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 39.0 bits (91), Expect = 3e-05
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 10 ESG-RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
ESG SGG +++L A + +P ++ +DEP S +DPIS ++ + +++K +IV+
Sbjct: 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVI 208
Query: 69 TSH 71
+H
Sbjct: 209 VTH 211
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 39.0 bits (91), Expect = 3e-05
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSH 71
+SGG +++L A L+ P LVF+DEPT G+D + RL +L ++ G ++++ +H
Sbjct: 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 39.2 bits (92), Expect = 4e-05
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++L+ A L+ P VFLDE TS +D + RL+ +L + + +++ HR
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHR 573
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 38.8 bits (91), Expect = 4e-05
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRH-RLWAVLSQIQKTGQSIVLTSH 71
SGG +++ AM L D P+V LDEPT+ +D I+ L ++ ++ G+++V H
Sbjct: 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQGKTVVTVLH 196
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 38.8 bits (90), Expect = 4e-05
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ P ++ +DEP S +DPIS ++ + ++ K +I++ +H
Sbjct: 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTH 218
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 38.8 bits (91), Expect = 5e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTS--GVDPISRHRLWAVLSQIQKTGQ-SIVLTSH 71
SGG RK + AL+ +P ++ LDEPT+ ++ I W L KT Q SI+ SH
Sbjct: 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIE----W--LEGFLKTFQGSIIFISH 211
Score = 25.7 bits (57), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG + +L A + L+ LDEPT+ +D
Sbjct: 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 38.7 bits (90), Expect = 5e-05
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG +++L A L +P ++ +DEP S +DPI+ ++ ++ ++K I++T
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT 205
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 38.5 bits (90), Expect = 5e-05
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
SGG +++ A+AL+ + P + DEPT+ +D +++ R+ +L I QK ++L +H
Sbjct: 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 38.5 bits (90), Expect = 5e-05
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL + G+ SGG +++++ A AL P L+ LDEP S +D R L + Q+Q+
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 38.5 bits (89), Expect = 6e-05
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A AL P ++ +DEP S +DPI+ ++ ++ ++ + +I + +H
Sbjct: 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTH 207
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 36.8 bits (86), Expect = 7e-05
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 8 HRESGRYSGGNKRKL-STAMAL---------IGDPP--LVFLDEPTSGVDPISRHRLWAV 55
R+SG SGG K+ L A+A G P L+FLDE + +D + L +
Sbjct: 17 SRDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLEL 76
Query: 56 LSQ 58
L +
Sbjct: 77 LRE 79
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 38.2 bits (89), Expect = 7e-05
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
+ E E SGG K++++ A L +P ++ LDE TS +DP +R L ++ +++
Sbjct: 131 DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190
Query: 62 T 62
Sbjct: 191 E 191
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 38.1 bits (89), Expect = 7e-05
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A ++ +PP++ LDE TS +D + + A L ++ ++V+ +HR
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI-AHR 457
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 38.2 bits (89), Expect = 8e-05
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
SGG +++ A AL+ P L+ LDEPT GVD + L+ ++ Q+++ ++++ SH
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 38.2 bits (89), Expect = 8e-05
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-K 61
L E+ R+ + SGG +++++ A AL+ P ++ LDEP S +D R ++ L IQ +
Sbjct: 90 LEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149
Query: 62 TGQSIVLTSH 71
G + V +H
Sbjct: 150 LGITFVFVTH 159
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 38.3 bits (89), Expect = 8e-05
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
L+ R+ SGG ++++ A AL +P L+ LDEPT+ +D ++ A++ ++
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 61 KTGQSIVLTSH 71
TG ++V H
Sbjct: 185 ATGVTVVAALH 195
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.3 bits (89), Expect = 8e-05
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL---SQIQK 61
E + + + +SGG + +++ A AL +P L+ LDEPT+ +D L AVL + + K
Sbjct: 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD------LHAVLWLETYLLK 389
Query: 62 TGQSIVLTSH 71
++ ++ SH
Sbjct: 390 WPKTFIVVSH 399
Score = 26.4 bits (58), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG K +++ A P ++ LDEP++ +D
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 38.1 bits (88), Expect = 8e-05
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A + P ++ +DEP S +DPIS ++ ++ ++ K +I++ +H
Sbjct: 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTH 205
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 38.1 bits (89), Expect = 8e-05
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L Y R SGG +++++ A AL+ +P ++ DEPT+ +DP ++ +++ ++ +T
Sbjct: 131 LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET 190
Query: 63 GQSIVLTSH 71
G + V+ +H
Sbjct: 191 GITQVIVTH 199
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 37.9 bits (88), Expect = 9e-05
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A L +P ++ LDEPTS +DP + ++ ++ +++ + +I++ +H
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTH 239
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 38.2 bits (89), Expect = 9e-05
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ P ++ LDE TS +D L S+ +T ++L +HR
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRT---VLLIAHR 673
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 37.8 bits (88), Expect = 9e-05
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSH 71
+SGG +++L A L+ P LVF+DEPT G+D + RL +L +++ G ++V+ +H
Sbjct: 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 37.7 bits (87), Expect = 1e-04
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD-PISRHRLWA-VLSQIQKTGQSIVLTSHR 72
SGG ++++ A AL + +VFLD+P S +D +S H + +L +Q +++VL +H+
Sbjct: 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 37.8 bits (88), Expect = 1e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIV 67
R GR SGG K++++ AL+ P L+ +DEP + +D ++ + L ++ + G I+
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 68 LTSH 71
SH
Sbjct: 187 YVSH 190
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 37.6 bits (88), Expect = 1e-04
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + R+ + SGG +++++ A AL+ +P ++ LDEP S +D R ++ L ++Q
Sbjct: 124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183
Query: 61 K-TGQSIVLTSH 71
+ G + V +H
Sbjct: 184 RELGITFVYVTH 195
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 37.7 bits (88), Expect = 1e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISR-------HRLWAVLSQIQKTGQSIV 67
SGG K++++ A ALI P L+ LDEP +D ++R LW Q+ G +++
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW------QQHGFTVL 188
Query: 68 LTSH 71
L +H
Sbjct: 189 LVTH 192
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 37.9 bits (88), Expect = 1e-04
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK 61
+ E+ R+ + SGG +++++ A +L P L+ LDEP +D R R+ V+ +++
Sbjct: 139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198
Query: 62 TGQSIVLTSH 71
G + V+ +H
Sbjct: 199 VGVTCVMVTH 208
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 37.5 bits (87), Expect = 1e-04
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+GL + SGG +++++ A AL+ +P LV DEPT +D + ++ +L ++
Sbjct: 133 VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 60 QKTGQSIVLTSH 71
+ G + ++ +H
Sbjct: 193 RLQGTAFLVVTH 204
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 37.4 bits (87), Expect = 1e-04
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
R SGG +++++ A AL P ++ DEPTS +DP + + Q+ + +++V+ +H
Sbjct: 144 RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 37.6 bits (88), Expect = 1e-04
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
G + R SGG +R+++ A AL+ +P L+ LDEPT+ +D
Sbjct: 143 GFPD-EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Score = 36.5 bits (85), Expect = 4e-04
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG K +L A L+ P L+ LDEPT+ +D S L L + T ++L SH
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT---VLLVSH 494
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 37.1 bits (87), Expect = 2e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72
+SGG K++ L+ +P L LDEP SG+D I RL A V++++++ G+S+++ +H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVAEVINKLREEGKSVLIITHY 163
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.0 bits (86), Expect = 2e-04
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ +P ++ +DEP S +DPIS + +++++ K +IV+ +H
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTH 205
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 37.1 bits (87), Expect = 2e-04
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 11 SGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
+ S G ++L+ A AL+ L+ LDEPT+ +D S + L+ + Q+ ++ +
Sbjct: 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVT 541
Query: 71 HR 72
H+
Sbjct: 542 HQ 543
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 37.1 bits (86), Expect = 2e-04
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSH 71
SGG R+ + A A+ +P L+ DEP G DPI+ L ++S++ G + V+ SH
Sbjct: 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 36.8 bits (86), Expect = 2e-04
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 9 RESGRYSGGNKRKLS------TAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--- 59
GR SGG K S A + ++ LDEPT+ +D + L++I
Sbjct: 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEE 167
Query: 60 ---QKTGQSIVLTSHR 72
QK Q IV+T
Sbjct: 168 RKSQKNFQLIVITHDE 183
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 37.0 bits (86), Expect = 2e-04
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K+++S A AL+ + ++ LD+ S VD + H++ L Q + G+++++++HR
Sbjct: 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAHR 509
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 36.8 bits (86), Expect = 2e-04
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL H G S G KR+++ A L+ + P+ LDEPT+ +D + ++
Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 61 KTGQSIVLTSH 71
G ++ +H
Sbjct: 175 AQGGIVIAATH 185
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 36.9 bits (86), Expect = 2e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
G SGG ++ LS MA + P ++ LDE T+ +DP
Sbjct: 147 GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP 181
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 36.6 bits (85), Expect = 3e-04
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG +++L A A+ P ++ +DEP S +DPI+ ++ ++ ++ + +IV+ +H
Sbjct: 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTH 220
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.4 bits (84), Expect = 3e-04
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
R SGG +++L+ A A++ + P++ LDE TS +D + R+ + ++K + ++ +HR
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII-AHR 529
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 36.6 bits (84), Expect = 3e-04
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
R SGG ++ L A L +P ++ LDEPTS +DP + ++ + + I++T
Sbjct: 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 36.1 bits (84), Expect = 4e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG ++++S A AL+ ++ D T G+D +
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 36.3 bits (84), Expect = 4e-04
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
G +K+ A+AL P L+ DEPT+ ++P ++ +++ +L+++ Q +I+L SH
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 35.9 bits (84), Expect = 4e-04
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALI------GDPPLVFLDEPTSGVDPISRHRL 52
L R+ + SGG ++++ A L G P + LDEPTS +D H+
Sbjct: 123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL--AHQH 177
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 35.9 bits (83), Expect = 4e-04
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
+ L R + SGG +++++ A AL +P ++ LDEP +D R L + L ++
Sbjct: 118 VQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 35.9 bits (83), Expect = 5e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
E+ R+SGG K +L A+ + P L+ LDEPT+ +D R L L I G ++V+
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEG-ALVVV 483
Query: 70 SH 71
SH
Sbjct: 484 SH 485
Score = 31.7 bits (72), Expect = 0.018
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+SGG + +L+ A ALI L+ LDEPT+ +D
Sbjct: 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 36.0 bits (83), Expect = 5e-04
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
SGG +++L A A+ P ++ +DEP S +DP++ + + ++ +++K IV+T
Sbjct: 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVT 205
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 36.0 bits (84), Expect = 5e-04
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
AL L+ LDEPT+ + P L+ +L ++ G++I+ +H+
Sbjct: 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
Score = 31.4 bits (72), Expect = 0.022
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGGN++KL A L P L+ +PT G+D
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 35.5 bits (82), Expect = 6e-04
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
+SGG +++++ A I D P++ LDEPT+ +D +R + ++ + + G ++V
Sbjct: 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 35.8 bits (83), Expect = 6e-04
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 71
+SGG +++ A ALI +P L+ DEP S +D + ++ +L Q+Q+ G S++ +H
Sbjct: 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 35.4 bits (82), Expect = 6e-04
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSI 66
HR S SGG +++++ A AL+ P LV DEPT +D + ++ ++ ++ + S
Sbjct: 137 HRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSF 195
Query: 67 VLTSH 71
++ +H
Sbjct: 196 LVVTH 200
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 35.0 bits (81), Expect = 0.001
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R + SGG ++++ A AL D F DEP+S +D R ++ ++
Sbjct: 127 LELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186
Query: 61 KTGQSIVLTSH 71
+ +++ H
Sbjct: 187 EDDNYVLVVEH 197
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 35.3 bits (82), Expect = 0.001
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 70
SGGN++K L D ++ LDEPT G+D ++H ++ V+ ++ G +++ S
Sbjct: 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVS 453
Score = 27.2 bits (61), Expect = 0.59
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 25 AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
A AL + ++ DEPTS + +L+ V+ +++ G+ I+ SHR
Sbjct: 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR 199
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 34.8 bits (80), Expect = 0.001
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A ++ P L+ LDEP + +D + L
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172
Query: 54 AVLSQIQKTGQSIVLTSH 71
+LS + + G +IV++SH
Sbjct: 173 RLLSALCQQGLAIVMSSH 190
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 35.0 bits (81), Expect = 0.001
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL R+ SGG ++++ A AL+ D + F DEP+S +D R V+ ++
Sbjct: 201 LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA 260
Query: 61 KTGQSIVLTSH 71
+ G+ +++ H
Sbjct: 261 EDGKYVIVVEH 271
Score = 28.0 bits (63), Expect = 0.28
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG ++++ A AL + L LDEP++ +D
Sbjct: 457 SGGELQRVAIAAALSREADLYLLDEPSAYLD 487
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 34.7 bits (80), Expect = 0.001
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + + SGG +++++ A A G P ++F DEPT +D + ++ +L +
Sbjct: 134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193
Query: 61 KT-GQSIVLTSH 71
+ G ++VL +H
Sbjct: 194 RERGTTLVLVTH 205
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 34.4 bits (80), Expect = 0.001
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS-----IVL 68
S G ++ L A AL+ ++ LDE T+ VDP + + IQKT + VL
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETD-------ALIQKTIREAFKDCTVL 192
Query: 69 T-SHR 72
T +HR
Sbjct: 193 TIAHR 197
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 34.4 bits (80), Expect = 0.001
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHR 72
SGG K+++S A A+ D + LD+P S VD ++ + + ++ +L +H+
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 34.6 bits (80), Expect = 0.001
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 2 GL-TEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
GL E+ R +SGG +++++ A AL+ DP +V DEP S +D
Sbjct: 142 GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 34.7 bits (80), Expect = 0.001
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+SGG ++++ AMAL+ P L+ DEPT+ +D
Sbjct: 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 34.5 bits (80), Expect = 0.002
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+SGG K++ L+ +P L LDEP SG+D
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 34.1 bits (78), Expect = 0.002
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL Y + S G K++L+ A + PL LDEP + +D + ++S
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL 184
Query: 61 KTGQSIVLTSH 71
+ G + ++T+H
Sbjct: 185 RGGGAALVTTH 195
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 34.2 bits (79), Expect = 0.002
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
MG+ G SGG +++L A AL+ P ++ DE TS +D ++ + L +++
Sbjct: 576 MGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK 635
Query: 61 KTGQSIVLTSHR 72
T ++ +HR
Sbjct: 636 VTR---IVIAHR 644
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 33.8 bits (78), Expect = 0.002
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI 66
++ SGG +++ A L +PP L LDEP++G+ ++L V+ + G ++
Sbjct: 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142
Query: 67 VLTSH 71
+L H
Sbjct: 143 ILIEH 147
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 33.7 bits (77), Expect = 0.003
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
SGG K++++ L P ++ LDE TS +D ++ + ++
Sbjct: 135 SGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 33.6 bits (77), Expect = 0.003
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
SGG +++++ A AL P ++ DE TS +DP
Sbjct: 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 33.1 bits (75), Expect = 0.004
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 5 EYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA------VLSQ 58
+ SG + +L+ A+A P ++ LDE TS +D L +L
Sbjct: 52 IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL 111
Query: 59 IQKTGQSIVLTSHR 72
+ +++LT++
Sbjct: 112 KSEKNLTVILTTND 125
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 33.2 bits (76), Expect = 0.004
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL HR SGG +++ AM + D + LDEPTS +D I+ H++ VL+ +
Sbjct: 135 VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IA-HQV-DVLALVH 191
Query: 61 KTGQSIVLT 69
+ Q LT
Sbjct: 192 RLSQERGLT 200
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 33.2 bits (76), Expect = 0.004
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL-SQI 59
+GL + + SGG +++++ A A G P ++F DEPT +D + ++ +L S
Sbjct: 134 LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLN 193
Query: 60 QKTGQSIVLTSH 71
++ G +++L +H
Sbjct: 194 REHGTTLILVTH 205
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 33.5 bits (77), Expect = 0.004
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 9 RESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
R G SGG K++++ AL+ P L+ +DEP + +D
Sbjct: 124 RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.1 bits (76), Expect = 0.006
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 9 RESGRYSGGNKRKLSTA------MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQK 61
R SGG + L A + L G+ PL+ LDEPT +D R +L ++ + ++K
Sbjct: 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK 843
Query: 62 TGQSIVLTSH 71
Q I++ SH
Sbjct: 844 IPQVIIV-SH 852
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 32.9 bits (75), Expect = 0.006
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 15 SGGNKRKLSTAMALIG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG ++L A L+ P L LDEPT+G+ L VL + G ++V+ H
Sbjct: 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Score = 31.3 bits (71), Expect = 0.022
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 37 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEP+ G+ P H+L V+ +++ G +++L H
Sbjct: 502 LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH 536
Score = 25.2 bits (55), Expect = 3.4
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
P L LDE + +D + L L + G S++ H
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDH 1760
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 32.9 bits (75), Expect = 0.006
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSH 71
S G K++L+ +AL+ + ++ LDE + DP R + V L +++ G++I SH
Sbjct: 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 32.4 bits (74), Expect = 0.008
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
SGG +++ AMA+ P L+ DEPT+ +D + ++ +L ++Q K ++VL +H
Sbjct: 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 32.3 bits (74), Expect = 0.008
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 14 YSGGNKRKLST-AMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSH 71
+SGG K++ MAL+ D L LDE SG+D I ++ A ++++ + SI+L +H
Sbjct: 152 FSGGEKKRNEILQMALL-DSELAILDETDSGLD-IDALKIIAEGINKLMTSENSIILITH 209
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 32.2 bits (74), Expect = 0.009
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 12 GRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
RY SGG ++++ A AL +P L+ DEP S +D
Sbjct: 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 32.2 bits (74), Expect = 0.009
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 9 RESGRYSGGNKRKLSTA----MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
R + SGG +++ A L G L LDEP+ G+ P RL L +++ G
Sbjct: 133 RSAPTLSGGEAQRIRLATQIGSGLTG--VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGN 190
Query: 65 SIVLTSH 71
++++ H
Sbjct: 191 TVLVVEH 197
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 32.1 bits (74), Expect = 0.012
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
L ++ YS G K +L+ A+A +P ++ +DE + D + + L ++ K
Sbjct: 131 ELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190
Query: 62 TGQSIVLTSH 71
G++++L SH
Sbjct: 191 QGKTVILVSH 200
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 31.9 bits (73), Expect = 0.014
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R + SGG +++++ A AL +P ++ LDEP +D R L L ++
Sbjct: 124 VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 61 -KTGQSIVLTSH 71
+ + V +H
Sbjct: 184 DELHVTTVFVTH 195
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 31.6 bits (72), Expect = 0.015
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 15 SGGNKRKLSTAMAL------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
SGG ++++ A L + +FLDEPTS +D +H + Q+ + G +++
Sbjct: 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA 196
Query: 69 TSH 71
H
Sbjct: 197 VLH 199
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 31.8 bits (72), Expect = 0.015
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG ++++ A A++ P ++ DEPT +D + + + + G ++++ +H
Sbjct: 139 SGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 31.9 bits (72), Expect = 0.015
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G+T + SGG +++ AM L + ++ LDEPT+ +D + L +LS++ +
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 62 T 62
Sbjct: 192 E 192
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 31.6 bits (72), Expect = 0.017
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G ++ L A AL+ P ++ LDE T+ +D + + + + + T +I+ +HR
Sbjct: 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAHR 183
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 31.4 bits (71), Expect = 0.019
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
SGG ++++ A AL P++ LDEPT+ +D + R ++ ++ G++ V H
Sbjct: 141 SGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH 197
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 31.5 bits (72), Expect = 0.020
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 14 YSGGNKRKLST-AMALIGDPPLVFLDEPTSGVD 45
+SGG K++ MAL+ +P L LDE SG+D
Sbjct: 145 FSGGEKKRNEILQMALL-EPKLAILDEIDSGLD 176
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 31.1 bits (70), Expect = 0.024
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ---KTGQSIVL 68
G S G KR+++ + L LDEP +D +S L ++++IQ G +++L
Sbjct: 126 GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHRAKGGAVLL 182
Query: 69 TSHR 72
TSH+
Sbjct: 183 TSHQ 186
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 31.1 bits (71), Expect = 0.024
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+ L + R SGG +++ AM L D V LDEP + +D
Sbjct: 123 LHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 30.7 bits (69), Expect = 0.036
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG K+++S A A+ + + D+P S VD
Sbjct: 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 30.6 bits (69), Expect = 0.036
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G+K+ + A +++ ++ LDEP++ +DPI+ + L Q +++L+ HR
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHR 196
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 30.6 bits (69), Expect = 0.042
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G+K+ + A +++ ++ LDEP++ +DP++ + L Q + +++L+ HR
Sbjct: 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ-SFSNCTVILSEHR 1411
Score = 28.0 bits (62), Expect = 0.38
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTS 70
SGG + ++S A A+ D L LD P + +D ++ ++ + L ++ I++TS
Sbjct: 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 30.5 bits (69), Expect = 0.042
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
+ SGG ++++ A AL P L+ LDE S +D + + + +L ++ Q G + + +H
Sbjct: 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 30.6 bits (69), Expect = 0.043
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
L+ Y H+ SGG ++++ AMAL P ++ DEPT+ +D
Sbjct: 162 LSRYPHQ----LSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Score = 29.4 bits (66), Expect = 0.094
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L E+ R +SGG ++++ A AL +P ++ DE S +D R ++ +L +Q+
Sbjct: 453 LPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512
Query: 63 -GQSIVLTSH 71
G + + SH
Sbjct: 513 FGIAYLFISH 522
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 30.3 bits (69), Expect = 0.044
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG +R+++ L+ P ++ LDEPT+ +D
Sbjct: 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
Score = 27.2 bits (61), Expect = 0.58
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 12 GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
G+ SGG + ++ A L ++ LDEPT+ +D
Sbjct: 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 30.2 bits (68), Expect = 0.046
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA 54
SGG ++++ A AL+ + DEP++ +D RL A
Sbjct: 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLD--IEQRLNA 110
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 30.3 bits (69), Expect = 0.050
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-K 61
L E+ R+ + SGG +++++ A A++ P ++ LDE S +D R ++ L +Q K
Sbjct: 134 LEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193
Query: 62 TGQSIVLTSH 71
G + V +H
Sbjct: 194 LGITFVFVTH 203
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 30.3 bits (68), Expect = 0.056
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSH 71
S G +++L+ A + D P++ DE + DP + + +L +++ G++I++ SH
Sbjct: 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 29.7 bits (67), Expect = 0.073
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
SGG K++++ A AL +P ++ LDEP +D R L L Q+
Sbjct: 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 29.7 bits (67), Expect = 0.073
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG +++++ A ALI P ++ DEP S +D
Sbjct: 138 SGGQQQRVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 29.8 bits (67), Expect = 0.077
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
P L+ LDE +GVD +R L+ +L + V+TS R
Sbjct: 1278 PRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 29.7 bits (67), Expect = 0.086
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 34 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
+ LDEP + + P + L A+L + +G I++ +H
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 29.2 bits (66), Expect = 0.10
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALI-----GDP-PLVFLDEPTSGVDPISRHRLWA 54
M E + + + SGG K + A+ALI DP P DE + +D R +
Sbjct: 148 MKQDEQQEMQ--QLSGGQKSLV--ALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN 203
Query: 55 VLSQIQKTGQSIVLT 69
++ ++ Q I T
Sbjct: 204 MIKELSDGAQFITTT 218
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 29.0 bits (66), Expect = 0.12
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG ++++ A L D L LDEP++ +D
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 28.6 bits (65), Expect = 0.21
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
GL R+ SGG ++++ A AL+ D F DEPTS +D
Sbjct: 201 GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 29.0 bits (65), Expect = 0.12
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L E+ ++ +YS G + KL ++ + +P ++ +DE S D + + + ++
Sbjct: 133 LGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192
Query: 63 GQSIVLTSH 71
++I SH
Sbjct: 193 NKTIFFVSH 201
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 29.2 bits (65), Expect = 0.15
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+S G ++ LS A AL+ ++ LDE T+ VD
Sbjct: 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
Score = 28.4 bits (63), Expect = 0.24
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K+++S A A+ + + D+P S +D H+++ + + G++ VL +++
Sbjct: 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ 799
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 28.4 bits (64), Expect = 0.21
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSH 71
+ S G K++L+ +AL + ++ LDE + DP R + V L +Q+ G++I SH
Sbjct: 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 28.5 bits (64), Expect = 0.22
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH 71
SGG +++ A AL +P L+ LDE S +D + + + +L ++Q + G + + +H
Sbjct: 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 28.4 bits (64), Expect = 0.26
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 9 RESGRYSGGNKRKLSTAM----ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ 64
R +G SGG +++ A L G L LDEP+ G+ RL L +++ G
Sbjct: 484 RAAGTLSGGEAQRIRLATQIGSGLTG--VLYVLDEPSIGLHQRDNRRLINTLKRLRDLGN 541
Query: 65 SIVLTSH 71
++++ H
Sbjct: 542 TLIVVEH 548
Score = 24.6 bits (54), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
L LDEPT+G+ +L VL ++ G ++V+ H
Sbjct: 851 RTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 28.3 bits (64), Expect = 0.28
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 25 AMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
A AL +P ++ LDEPT+ +D + L VL++ T +++ SH
Sbjct: 167 AQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNST---MIIISH 210
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 28.3 bits (63), Expect = 0.29
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 15 SGGNKRKLSTAMA------LIGDPPLVFLDEPTSGVDPISRHRLWAV----LSQIQKTGQ 64
SGG K ++ A+ L D L+ +DEPT+ +D R L + L Q
Sbjct: 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQ 862
Query: 65 SIVLTSHR 72
I+++ HR
Sbjct: 863 VIMISHHR 870
>gnl|CDD|233798 TIGR02244, HAD-IG-Ncltidse, HAD superfamily (subfamily IG)
hydrolase, 5'-nucleotidase. This model includes a
5'-nucleotidase specific for purines (IMP and GMP).
These enzymes are members of the Haloacid Dehalogenase
(HAD) superfamily. HAD members are recognized by three
short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either
{hhhh(D/E)(D/E)x(3-4)(G/N)} or
{hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a
hydrophobic residue). Crystal structures of many HAD
enzymes has verified PSI-PRED predictions of secondary
structural elements which show each of the "hhhh"
sequences of the motifs as part of beta sheets. This
subfamily of enzymes is part of "Subfamily I" of the HAD
superfamily by virtue of a "cap" domain in between
motifs 1 and 2. This subfamily's cap domain has a
different predicted secondary structure than all other
known HAD enzymes and thus has been designated
"subfamily IG". This domain appears to consist of a
mixed alpha/beta fold. A Pfam model (pfam05761) detects
an identical range of sequences above the trusted
cutoff, but does not model the N-terminal motif 1
region. A TIGRFAMs model (TIGR01993) represents a
(putative) family of _pyrimidine_ 5'-nucleotidases which
are also subfamily I HAD's, which should not be confused
with the current model.
Length = 343
Score = 28.1 bits (63), Expect = 0.30
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 3 LTEYRHRESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLW 53
E E G+ YSGG+ ++ + G L F D + + R W
Sbjct: 266 WGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 28.0 bits (63), Expect = 0.33
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
+ G+ P++ LD+ + +D R A+L I+ Q+ V T+
Sbjct: 207 VSGEYPVLLLDDVLAELDL---GRQAALLDAIEGRVQTFVTTTDL 248
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 27.6 bits (62), Expect = 0.38
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 34 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
L LDEPT+G+ +L VL ++ G ++V+ H
Sbjct: 193 LYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 27.9 bits (63), Expect = 0.39
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG K++++ AL+ P L+ +DEP + +D
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 27.7 bits (62), Expect = 0.40
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 15 SGGNKRKLST-----AMALIGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVL 68
SGG ++ LS A+ I P LDE + +DP +R R+ + + T Q IV+
Sbjct: 96 SGG-EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 69 T 69
T
Sbjct: 155 T 155
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 27.9 bits (62), Expect = 0.41
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
YS G K +L A+++ +P ++ +DE S D + +++ ++ G++I SH
Sbjct: 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 27.8 bits (62), Expect = 0.44
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A P LDE TS V ++ + ++ G ++ SHR
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC---REFGITLFSVSHR 638
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 27.6 bits (62), Expect = 0.48
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPP-------LVFLDEPTSGVDPISRHRLWA 54
GL + R + SGG +++ A ++ P L+ LDEP + +D + L
Sbjct: 115 GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDR 174
Query: 55 VLSQIQKTGQSIVLTSH 71
+LS++ + G ++V++SH
Sbjct: 175 LLSELCQQGIAVVMSSH 191
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 27.3 bits (61), Expect = 0.51
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
SGG +++++ L+ +P + LDEP S +D R ++ +S++ K
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 27.5 bits (62), Expect = 0.52
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEP-----TSGVDPISRHRLWAV 55
+GL + + S G +R+++ A + PL LDEP GV +
Sbjct: 117 VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL----- 171
Query: 56 LSQIQKTGQSIVLTSH 71
L+Q + G ++LT+H
Sbjct: 172 LAQHAEQGGMVILTTH 187
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 26.8 bits (60), Expect = 0.76
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
L ++ + YS G +L+ ++A +P ++ LDE + D + + L+++ +
Sbjct: 136 ELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195
Query: 62 TGQSIVLTSH 71
++IVL SH
Sbjct: 196 KNKTIVLVSH 205
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 26.8 bits (60), Expect = 0.78
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 7 RHRESGRYSGGN--KRKLSTAMAL------IGDPPL--VFLDEPTSGVDPISRHRLWAVL 56
R + SGG LS A+AL G L +F+DE +DP + + L
Sbjct: 119 RPVST--LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL 176
Query: 57 SQIQKTGQSIVLTSH 71
I+ + + + SH
Sbjct: 177 ELIRTENRMVGVISH 191
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 26.7 bits (59), Expect = 0.81
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQS-IVLTSH 71
+ G K++++ A ALI P ++ DE + +D R +L ++ ++Q K G S I +T H
Sbjct: 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 27.0 bits (60), Expect = 0.82
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG K+++S A A+ + + D+P S +D
Sbjct: 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Score = 25.9 bits (57), Expect = 2.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+S G ++ LS A AL+ ++ LDE T+ VD
Sbjct: 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 27.0 bits (61), Expect = 0.82
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPT 41
SGG +R+++ L+ P ++ LDEPT
Sbjct: 165 SGGERRRVALCRLLLEKPDMLLLDEPT 191
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 26.7 bits (59), Expect = 0.94
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 15 SGGNKRKLSTAMALIGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
S G R L+ A L+ PPL+ LDEP + + P L ++ K Q IV T
Sbjct: 272 SDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVST 328
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 26.7 bits (59), Expect = 0.99
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 31 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 69
P + LDEPT+ +D +HRL + ++ + VL
Sbjct: 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA 210
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 26.4 bits (59), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 30 GDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSH 71
LV LDE SG DP+ L A+L ++ + G ++ T+H
Sbjct: 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTH 149
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 26.3 bits (58), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG K ++S A A+ + + LD+P S +D
Sbjct: 784 SGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 26.0 bits (57), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG + ++S A A+ D L LD P +D
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels of
palindromic sequences in DNA. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1042
Score = 26.1 bits (57), Expect = 1.7
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 9 RESGRYSGGNKRKLSTAMAL-IGDP---------PLVFLDEPTSGVDPISRHRLWAVLSQ 58
R S SGG S ++AL + D +F+DE +D S R +L
Sbjct: 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDA 1005
Query: 59 IQKTGQSIVLTSH 71
I++ + I + SH
Sbjct: 1006 IREGSKMIGIISH 1018
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 25.8 bits (57), Expect = 2.2
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
S G K+ L+ A L+ P ++ LDE T+ +D + + L+ +++ ++V+ +HR
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHR 534
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 25.5 bits (56), Expect = 2.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 14 YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
+SGG K++ + +P L LDE SG+D
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 25.8 bits (56), Expect = 2.5
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 2 GLTEYRHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAV 55
G T R GR S G K +L+ A + ++ LDEPT+ +D + L
Sbjct: 1190 GDTALDMR--GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHA 1247
Query: 56 LSQI------QKTGQSIVLT 69
L +I Q+ Q +V+T
Sbjct: 1248 LVEIIKSRSQQRNFQLLVIT 1267
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 25.3 bits (56), Expect = 2.7
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 26 MALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
G+ P++ LD+ S +D R A+L I+ Q V T+
Sbjct: 297 REETGEYPILLLDDVASELDD---GRRAALLDTIELGVQVFVTTTDL 340
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 25.6 bits (56), Expect = 2.9
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 32 PPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSIVLTSH 71
LV DE +G DP L ++L + K +++T+H
Sbjct: 403 NSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTH 443
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional.
Length = 218
Score = 25.1 bits (55), Expect = 3.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 18 NKRKLSTAMALIGDP 32
R L TAM +I DP
Sbjct: 203 GDRVLRTAMVIIADP 217
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 25.2 bits (55), Expect = 3.2
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 5 EYRHRES-GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKT 62
+R S G K + A L P ++ +DE + +D ++ R+ +S++ ++
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 63 GQSIVLTSHR 72
G ++++ +HR
Sbjct: 558 GITLIVVTHR 567
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 25.1 bits (55), Expect = 3.6
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 15 SGGNKRKLS-TAMALI-----GDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
SGG K S TA+AL+ P P LDE + +D + R+ ++ ++ K Q IV
Sbjct: 1068 SGGEK---SLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIV 1124
Query: 68 LTSHR 72
+T HR
Sbjct: 1125 IT-HR 1128
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 25.1 bits (55), Expect = 3.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 30 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
G+ P++ +D+ T+ +DP R A+L+ Q+IV
Sbjct: 289 GEAPVLLVDDFTAELDP---RRRGALLALAASLPQAIV 323
>gnl|CDD|236779 PRK10864, PRK10864, putative methyltransferase; Provisional.
Length = 346
Score = 24.7 bits (54), Expect = 4.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 44 VDPISRHRLWAVLSQIQKTGQSIVLTS 70
V PI+ VL ++ G +IV TS
Sbjct: 251 VQPITGDSFVDVLDDFRQAGYTIVTTS 277
>gnl|CDD|119192 pfam10672, Methyltrans_SAM, S-adenosylmethionine-dependent
methyltransferase. Members of this family are
S-adenosylmethionine-dependent methyltransferases from
gamma-proteobacterial species. The diversity in the
roles of methylation is matched by the almost
bewildering number of methyltransferase enzymes that
catalyze the methylation reaction. Although several
classes of methyltransferase enzymes are known, the
great majority of methylation reactions are catalyzed
by the S-adenosylmethionine-dependent
methyltransferases.
Length = 286
Score = 24.8 bits (54), Expect = 4.9
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
L + FLD G+ + WA K G+ +VL HR
Sbjct: 30 LFKEVDDAFLDALKRGLAALVAAPAWA-----SKQGRRLVL-QHR 68
>gnl|CDD|226121 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD
family [DNA replication, recombination, and repair].
Length = 581
Score = 24.7 bits (54), Expect = 4.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 32 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
P ++ ++EP + + P + LW +L+ + Q IV T+H
Sbjct: 302 PNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIV-TTH 340
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 24.6 bits (55), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 37 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEPT+G + I +L VL ++ G ++V+ H
Sbjct: 857 LDEPTTGLHFEDI--RKLLEVLHRLVDKGNTVVVIEH 891
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 24.2 bits (52), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 15 SGGNKRKLSTAMALIGD--PPLVFLDEPTSGVD 45
+ G+ + T M+L+ PP + LD+P G+D
Sbjct: 346 AAGSVEAIITVMSLVDQIVPPTINLDDPEEGLD 378
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 24.2 bits (53), Expect = 7.0
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 30 GDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKTGQSIVLTSH 71
G+P L LDE G + R AVL ++ ++++H
Sbjct: 104 GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTH 146
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 24.0 bits (52), Expect = 7.6
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 17 GNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQS-IVLTSH 71
G K++L A ALI P ++ DE + +D R +L ++ ++Q K G S I +T H
Sbjct: 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 24.1 bits (53), Expect = 7.9
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 37 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEP+ G+ RL L +++ G ++++ H
Sbjct: 507 LDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541
Score = 24.1 bits (53), Expect = 8.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 37 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEPT+G+ +L VL ++ G ++++ H
Sbjct: 849 LDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883
>gnl|CDD|177588 PHA03347, PHA03347, uracil DNA glycosylase; Provisional.
Length = 252
Score = 23.9 bits (52), Expect = 8.0
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 28 LIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
L+ DP L FL + P + +L A+L+ +++ + V+
Sbjct: 25 LLSDPWLDFLQ-----LSPFLKQKLLALLNCVRELRKQTVI 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,666,983
Number of extensions: 279442
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 398
Length of query: 72
Length of database: 10,937,602
Length adjustment: 42
Effective length of query: 30
Effective length of database: 9,074,734
Effective search space: 272242020
Effective search space used: 272242020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)