RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy858
(72 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 97.6 bits (244), Expect = 3e-27
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
GL E YS G RKL A AL+ +P L LDEPTSG+D ++ + +L Q
Sbjct: 134 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 61 KTGQSIVLTSH 71
+ G +I+++SH
Sbjct: 194 QEGLTILVSSH 204
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 84.5 bits (210), Expect = 2e-22
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + + ++ G S G R++ A L+ + + LD+P +D S+H++ + +I
Sbjct: 122 VEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 61 K-TGQSIVLTSH 71
K G I+ +
Sbjct: 181 KEKGIVIISSRE 192
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 75.7 bits (187), Expect = 1e-18
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+G++ + G S G K+++ A AL+G P ++ LDEP +G+D I+R L ++L +
Sbjct: 149 VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS 208
Query: 60 -QKTGQSIVLTSHR 72
+++ +H
Sbjct: 209 DSYPTLAMIYVTHF 222
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 63.0 bits (154), Expect = 6e-14
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ ++ R SGG KR+++ A ++ +P ++ LDEP G+D + L ++ + +
Sbjct: 126 LDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 61 KTGQSIVLTSH 71
G++++L SH
Sbjct: 186 TLGKTVILISH 196
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 62.2 bits (152), Expect = 1e-13
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
G+ + + + S G K++++ A L+ +P ++ LDEPT+G+DP+ + +L ++Q
Sbjct: 131 TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 61 K-TGQSIVLTSH 71
K G +I++ +H
Sbjct: 191 KELGITIIIATH 202
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 60.3 bits (147), Expect = 5e-13
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI- 59
+ LT RE SGG ++ + A A+ + L+ LDEPTS +D ++ + ++L +
Sbjct: 116 LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 60 QKTGQSIVLTSH 71
Q ++V T+H
Sbjct: 176 QSQNMTVVFTTH 187
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 59.3 bits (144), Expect = 1e-12
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
+ L E R+ + S G + T++AL P +V LDEP VD RH + + +
Sbjct: 115 LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY 174
Query: 60 QKTGQSIVLTSH 71
K +L +H
Sbjct: 175 GKE---GILVTH 183
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 58.7 bits (143), Expect = 2e-12
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L+ R++G SGG + + AL+ +P ++ +DEP +GV P H ++ + +++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 61 KTGQSIVLTSH 71
G + ++ H
Sbjct: 201 AKGITFLIIEH 211
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 59.3 bits (144), Expect = 2e-12
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L SGG +KL A L + L LD+P+S +D R+ + + ++
Sbjct: 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT 432
Query: 61 KTGQSIVLT-SH 71
+ +++ H
Sbjct: 433 RERKAVTFIIDH 444
Score = 54.6 bits (132), Expect = 7e-11
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ +T ++++ SGG ++L A +L+ + + D+P+S +D R + + ++
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 61 KTGQSIVLTSHR 72
K + +++ H
Sbjct: 186 K-NKYVIVVDHD 196
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 58.1 bits (141), Expect = 5e-12
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R+ + SGG ++ + M+ + + + DEP+S +D R ++ +
Sbjct: 209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268
Query: 61 KTGQSIVLTSHR 72
+ ++ H
Sbjct: 269 APTKYVICVEHD 280
Score = 55.4 bits (134), Expect = 4e-11
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + + +E SGG ++++ +AL + +DEP++ +D R V+ +
Sbjct: 455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Query: 61 K-TGQSIVLTSH 71
++ + H
Sbjct: 515 LHNKKTAFIVEH 526
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 55.4 bits (134), Expect = 4e-11
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ + R SGG ++++ A L+ D + LDEP++ +D R + + +
Sbjct: 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 61 -KTGQSIVLTSH 71
K ++ ++ H
Sbjct: 519 EKNEKTALVVEH 530
Score = 51.9 bits (125), Expect = 6e-10
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L RE + SGG ++++ A AL+ F DEP+S +D R ++ V+ ++
Sbjct: 216 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275
Query: 61 KTGQSIVLTSHR 72
G+++++ H
Sbjct: 276 NEGKAVLVVEHD 287
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 54.7 bits (131), Expect = 6e-11
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 7 RHRESGRYSGGNKR------KLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ R SGG + +L+ ++ L G+ L+ LDEPT +D R +L ++ +
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 61 KTGQSIVLTSH 71
K ++L SH
Sbjct: 302 KKIPQVILVSH 312
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 52.3 bits (126), Expect = 5e-10
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ + RE SGG ++++ A L+ D + LDEP++ +D R + + +
Sbjct: 389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448
Query: 61 -KTGQSIVLTSH 71
K ++ ++ H
Sbjct: 449 EKNEKTALVVEH 460
Score = 51.5 bits (124), Expect = 1e-09
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L RE SGG ++++ A AL+ + F DEP+S +D R + ++
Sbjct: 146 LELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 61 KTGQSIVLTSHR 72
+ G+S+++ H
Sbjct: 206 EEGKSVLVVEHD 217
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 47.5 bits (114), Expect = 2e-08
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + R+ SGG +++++ A AL +P L+F DEPT +D + R+ + +I
Sbjct: 128 LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 61 KTGQSIVLTSH 71
+ G SIV+ +H
Sbjct: 188 EGGTSIVMVTH 198
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 45.4 bits (107), Expect = 1e-07
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 8 HRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 67
H SGG K KL A P L+ LDEPT+ +D S L L + + ++
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG---VI 952
Query: 68 LTSH 71
+ +H
Sbjct: 953 IITH 956
Score = 40.4 bits (94), Expect = 8e-06
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 1 MGLTEYRHRES-GRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
G T+ SGG K KL+ A A++ + ++ LDEPT+ +D ++ L L+
Sbjct: 535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC 594
Query: 60 QKTGQSIVLTSH 71
T + SH
Sbjct: 595 GIT---SITISH 603
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 44.3 bits (105), Expect = 3e-07
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A AL+ +P ++ LDE TS +D S + A L + ++ G++ ++ +HR
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHR 584
Score = 36.6 bits (85), Expect = 2e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG K++++ A AL+ P ++ LDE TS +D S
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 43.2 bits (102), Expect = 4e-07
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 9 RESGRYSGGNK------RKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
R SGG + +L+ ++ L G+ L+ LDEPT +D R +L ++ + K
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112
Query: 63 GQSIVLTSH 71
++L SH
Sbjct: 113 IPQVILVSH 121
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 43.7 bits (104), Expect = 5e-07
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMAL-------IGDPPLVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A + L+ LDEP + +D + L
Sbjct: 114 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173
Query: 54 AVLSQIQKTGQSIVLTSH 71
+LS + + G +IV++SH
Sbjct: 174 KILSALSQQGLAIVMSSH 191
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.5 bits (100), Expect = 1e-06
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 7 RHRESGRYSGGNKRKLSTAMAL-------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
SGG + ++ ++ L + LDEPT +D R +L + ++
Sbjct: 274 GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333
Query: 60 QKTGQSIVLTSHR 72
+ Q I++ +H
Sbjct: 334 KSIPQMIII-THH 345
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 41.1 bits (97), Expect = 4e-06
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG K++++ A ++ P ++ LDE TS +D + + A L+++ +IV+ +HR
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV-AHR 248
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 40.9 bits (97), Expect = 4e-06
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 3 LTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
L E + G SGG ++ L+ AL+ P L+ +DEP+ G+ PI ++ V+ +I +
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 63 GQSIVL 68
G +I+L
Sbjct: 189 GTTILL 194
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 40.4 bits (95), Expect = 7e-06
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-Q 60
GL + SGG K++++ A AL +P ++ D+ TS +DP + + +L I +
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 61 KTGQSIVLTSH 71
+ G +I+L +H
Sbjct: 212 RLGLTILLITH 222
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 39.9 bits (94), Expect = 1e-05
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A L+ DP +V DE TS +D + + + ++K I++ +HR
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIII-AHR 213
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 38.7 bits (91), Expect = 3e-05
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ R+ R SGG +++++ A AL+ P L+ LDEP S VD ++ L L +Q
Sbjct: 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173
Query: 61 K-TGQSIVLTSH 71
+ I+ +H
Sbjct: 174 REFDVPILHVTH 185
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 38.6 bits (91), Expect = 3e-05
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++++ A AL+ +P ++ DE TS +D S H + + +I K I++ HR
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA-HR 203
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 37.9 bits (89), Expect = 6e-05
Identities = 16/58 (27%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSH 71
SGG +++++ A AL +PP++ D+PT +D + ++ +L ++ ++ G+++V+ +H
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Score = 25.2 bits (56), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSG 43
SG K ST + +IG LD+PT G
Sbjct: 40 SGSGK---STMLNIIG-----CLDKPTEG 60
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 37.2 bits (87), Expect = 9e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG K++LS A + +PP++ LDE TS +D
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALD 509
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG +++L+ A A + +P ++ LDE T+ +D
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 36.0 bits (84), Expect = 3e-04
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG +++++ A AL+ D P++ LDE TS +D
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALD 512
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 35.6 bits (83), Expect = 4e-04
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
SGG +++++ A AL+ D P++ LDE TS +D
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD 512
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 34.8 bits (81), Expect = 6e-04
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHR 72
SGG ++ ++ A ALI P L+ LD TS +D ++ R+ +L + + ++++L + +
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 34.5 bits (80), Expect = 9e-04
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 10 ESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVD 45
S G ++ L+ A + +P ++ LDE TS VD
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 34.5 bits (80), Expect = 9e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
GL + H SGG ++++ A AL +P ++ DEPTS +DP
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 34.1 bits (78), Expect = 0.002
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 9 RESGRYSGGNKRKLSTAMAL-----IGDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKT 62
R + SGG + +S ++A+ F+DE S +D ++ ++ +VL ++++
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 63 GQSIVLTSH 71
+ IV +H
Sbjct: 335 NKVIVFITH 343
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 33.7 bits (78), Expect = 0.002
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + R SGG +++++ A AL+ +P ++ LDEP S +DP ++ +LS +
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 61 K 61
K
Sbjct: 175 K 175
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 33.3 bits (77), Expect = 0.003
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
SGG K++LS A AL+ P ++ LD+ TS VDPI+ R+ L + T
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK--RYTKGCTTF 532
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 32.5 bits (75), Expect = 0.005
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
G++E R SGG +++ + A AL DP L+ LDEP S +D R ++ + +
Sbjct: 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186
Query: 62 -TGQSIVLTSH 71
G+S V SH
Sbjct: 187 ANGKSAVFVSH 197
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 31.8 bits (73), Expect = 0.008
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPIS 48
SGG K++++ A AL+ +P ++ LDE TS +D +
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 31.8 bits (73), Expect = 0.008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
M L Y +R SGG +++++ A AL P ++ DEP + +D R L + Q+
Sbjct: 133 MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192
Query: 61 K 61
Sbjct: 193 D 193
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 31.4 bits (72), Expect = 0.012
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP 46
SGG ++++S A AL +P ++ DEPTS +DP
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 29.3 bits (66), Expect = 0.061
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 10 ESGR-YSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-----G 63
+ G S G+K+ + A +++ ++ LDEP++ +DP++ I++T
Sbjct: 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-------QIIRRTLKQAFA 203
Query: 64 QSIVLT-SHR 72
V+ R
Sbjct: 204 DCTVILCEAR 213
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 28.4 bits (64), Expect = 0.16
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFL-DEPTSGVD 45
+ + + SG +++++ A AL+ DP + L DEP S +D
Sbjct: 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPS-LLLLDEPFSNLD 172
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 27.7 bits (62), Expect = 0.24
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP-ISRH 50
SGG + ++S A A+ D L LD P +D +
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 197
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.5 bits (62), Expect = 0.24
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP-ISRH 50
SGG + ++S A A+ D L LD P +D +
Sbjct: 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 27.5 bits (62), Expect = 0.25
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDP-ISRH 50
SGG K+++S A A+ + + D+P S VD + +H
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 26.9 bits (60), Expect = 0.41
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 15 SGGNKRKLSTAMALI-----GDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 68
SGG K L TA+A + P P DE + +D + R+ ++ + K Q IV+
Sbjct: 66 SGGEK-AL-TALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI 123
Query: 69 TSHR 72
T R
Sbjct: 124 T-LR 126
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical
dehydratase, lyase; 1.82A {Clostridium difficile} PDB:
3o3n_A* 3o3o_A
Length = 408
Score = 27.0 bits (59), Expect = 0.50
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 18 NKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
K ++ D PL+ +D + D +++ R+ + +Q ++
Sbjct: 119 QVIKWYENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQFEE 162
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 25.9 bits (58), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 37 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEPT+G+ P RL L ++ G +++ H
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 24.8 bits (55), Expect = 2.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 14 YSGGNKRKLSTA-MALIGDPPLVFLDEPTSGVD 45
+SGG K++ + ++ +P LDE SG+D
Sbjct: 144 FSGGEKKRNEILQLLVL-EPTYAVLDETDSGLD 175
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 24.8 bits (55), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 14 YSGGNKRKLSTA-MALIGDPPLVFLDEPTSGVD 45
+SGG K++ MA++ +P L LDE SG+D
Sbjct: 165 FSGGEKKRNDILQMAVL-EPELCILDESDSGLD 196
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme,
dimer, structural genomics; HET: PLP; 1.50A
{Mycobacterium tuberculosis} PDB: 3vom_A*
Length = 398
Score = 24.1 bits (53), Expect = 4.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 54 AVLSQIQKTGQSIVLTSHR 72
L + T ++ TSHR
Sbjct: 54 EQLQTLTTTAAALFGTSHR 72
>4fib_A Uncharacterized protein YDHK; structural genomics, PSI-biology,
northeast structural genom consortium, NESG, SR518A,
DUF1541, PF07563; 2.00A {Bacillus subtilis subsp} PDB:
2ky9_A
Length = 129
Score = 23.8 bits (51), Expect = 5.4
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 39 EPTSGVDPISRHRLWAVLSQIQKTGQS 65
PT+G + H+ W + +I+ G
Sbjct: 38 TPTNGGQRVDHHK-WVIQEEIKDAGDK 63
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 23.7 bits (52), Expect = 5.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 27 ALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
G+ P++ LD+ T+ +DP R L L Q+IV +
Sbjct: 288 EKFGEDPVLLLDDFTAELDPHRRQYL---LDLAASVPQAIVTGTEL 330
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 23.6 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 37 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEPT G + + +L VL ++ G ++++ H
Sbjct: 832 LDEPTVGLHFEDV--RKLVEVLHRLVDRGNTVIVIEH 866
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 23.6 bits (52), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 37 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEPT+G VD I RL VL ++ G ++++ H
Sbjct: 570 LDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEH 604
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 23.2 bits (51), Expect = 8.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 37 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSH 71
LDEPT+G VD I RL VL ++ G ++++ H
Sbjct: 872 LDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEH 906
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,059,184
Number of extensions: 49761
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 64
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)