RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy858
(72 letters)
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 74.9 bits (184), Expect = 4e-19
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
L E + G SGG ++ L+ AL+ P L+ +DEP+ G+ PI ++ V+ +I +
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 62 TGQSIVLTSH 71
G +I+L
Sbjct: 188 EGTTILLVEQ 197
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 72.5 bits (178), Expect = 3e-18
Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + E +R + SGG +++++ A A++ +P ++ +DEP S +D R + A + ++Q
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 61 -KTGQSIVLTSH 71
K + + +H
Sbjct: 184 QKLKVTTIYVTH 195
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 71.2 bits (174), Expect = 2e-17
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L+ R++G SGG + + AL+ +P ++ +DEP +GV P H ++ + +++
Sbjct: 138 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 61 KTGQSIVLTSH 71
G + ++ H
Sbjct: 198 AKGITFLIIEH 208
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 67.7 bits (165), Expect = 3e-16
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
GL E YS G RKL A AL+ +P L LDEPTSG+D ++ + +L Q
Sbjct: 121 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180
Query: 61 KTGQSIVLTSH 71
+ G +I+++SH
Sbjct: 181 QEGLTILVSSH 191
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 62.5 bits (152), Expect = 2e-14
Identities = 18/76 (23%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 1 MGLTEYRHRESGRY----SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVL 56
+ + E R + SGG +++++ A AL +PP++ D+PT +D + ++ +L
Sbjct: 129 LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 57 SQIQK-TGQSIVLTSH 71
++ + G+++V+ +H
Sbjct: 189 KKLNEEDGKTVVVVTH 204
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 62.2 bits (151), Expect = 3e-14
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GL + SGG K++++ A AL +P ++ DE TS +DP + + +L I
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 61 K-TGQSIVLTSH 71
+ G +I+L +H
Sbjct: 188 RRLGLTILLITH 199
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 61.1 bits (148), Expect = 8e-14
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+GLTE +R+ SGG +++++ A++ P + +DEP S +D R R+ A L ++Q
Sbjct: 127 LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 61 -KTGQSIVLTSH 71
+ G + + +H
Sbjct: 187 RQLGVTTIYVTH 198
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 60.3 bits (146), Expect = 9e-14
Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + + + + G S G R++ A L+ + + LD+P +D S+H++ + +I
Sbjct: 114 VEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172
Query: 61 KTGQSIVLTSH 71
K ++++S
Sbjct: 173 KEKGIVIISSR 183
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 61.0 bits (148), Expect = 1e-13
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
GL SGG +++++ A AL+ D P++ LDE TS +D S + A L ++QK
Sbjct: 141 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 200
Query: 62 TGQSIVLTSHR 72
++ ++ +HR
Sbjct: 201 -NRTSLVIAHR 210
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 60.3 bits (146), Expect = 2e-13
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALI-------GDPPLVFLDEPTSGVDPISRHRLW 53
+ L + R + + SGG +++ A ++ L+ LDEP + +D + L
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172
Query: 54 AVLSQIQKTGQSIVLTSHR 72
+LS + + G +IV++SH
Sbjct: 173 KILSALCQQGLAIVMSSHD 191
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 59.9 bits (145), Expect = 3e-13
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MGLTE-YRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI 59
+G+ E + + SGG ++++S A AL +P ++ DEPTS +DP + ++ Q+
Sbjct: 136 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 195
Query: 60 QKTGQSIVLTSH 71
+ G+++V+ +H
Sbjct: 196 AEEGKTMVVVTH 207
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 59.5 bits (144), Expect = 4e-13
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 2 GLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 61
SGG + ++S A A+ D L LD P +D + +++
Sbjct: 147 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206
Query: 62 TGQSIVLTSHR 72
++ +L + +
Sbjct: 207 ANKTRILVTSK 217
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 58.0 bits (140), Expect = 1e-12
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
G + SGG +++++ A AL+ +P ++ DE TS +D S H + + +I
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186
Query: 61 KTGQSIVLTSHR 72
K G+++++ +HR
Sbjct: 187 K-GRTVIIIAHR 197
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 57.9 bits (138), Expect = 2e-12
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 13 RYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
R + G +L+ ++ L G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 284 RIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 343
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 56.7 bits (137), Expect = 3e-12
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
G + SGG K++LS A + +PP++ LDE TS +D S + L +
Sbjct: 142 QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 201
Query: 61 KTGQSIVLTSHR 72
K ++ ++ +HR
Sbjct: 202 K-DRTTLIVAHR 212
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 51.8 bits (124), Expect = 2e-10
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
SGG +++L+ A A + +P ++ LDE T+ +D S + L + K G++ ++ +HR
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 51.9 bits (124), Expect = 2e-10
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ L R+ SGG +++++ L+ +P + LDEP S +D R ++ +S++
Sbjct: 118 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177
Query: 61 -KTGQSIVLTSH 71
+ G++++ +H
Sbjct: 178 KRLGRTMIYVTH 189
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.1 bits (123), Expect = 2e-10
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 1 MGLTEYRHRESGRYSGGNKRKL------STAMALIGDPPLVFLDEPTSGVDPISRHRLWA 54
+ E + R SGG + L + ++ L G+ L+ LDEPT +D R +L
Sbjct: 189 FVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 248
Query: 55 VLSQIQKTGQSIVLTSHR 72
++ + K ++L SH
Sbjct: 249 IMERYLKKIPQVILVSHD 266
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 49.5 bits (118), Expect = 2e-09
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 15 SGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHR 72
SGG ++ ++ A ALI P ++ LD+ TS +D S+ ++ +L + + +S++L +
Sbjct: 153 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 42.7 bits (100), Expect = 4e-07
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + R SGG +++++ A AL+ +P ++ LDEP S +DP ++ +LS +
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 61 -KTGQSIVLTSH 71
K +++ +H
Sbjct: 175 KKNKLTVLHITH 186
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 42.8 bits (100), Expect = 4e-07
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+ + + SG +++++ A AL+ DP L+ LDEP S +D R A++ ++Q
Sbjct: 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 61 -KTGQSIVLTSH 71
+ G ++++ SH
Sbjct: 188 SRLGVTLLVVSH 199
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 40.4 bits (94), Expect = 3e-06
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MGLTEYRHRESGRYSGGNKRKLSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ 60
+G+ R+ R SGG +++++ A AL+ P L+ LDEP S VD ++ L L +Q
Sbjct: 114 LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173
Query: 61 -KTGQSIVLTSH 71
+ I+ +H
Sbjct: 174 REFDVPILHVTH 185
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 39.3 bits (90), Expect = 7e-06
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 22 LSTAMALIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHR 72
L A+ P LDE + +D + R+ A + + + ++ S +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 395
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 23.7 bits (51), Expect = 1.7
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 29 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG 63
+P FL + S R ++ + +G
Sbjct: 54 KDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPSSG 88
>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
BC3120 {Bacillus cereus [TaxId: 1396]}
Length = 403
Score = 23.0 bits (49), Expect = 5.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 22 LSTAMALIGDPPLVFLDEPTSGVDPISRHR 51
L ++G +V L E T G + +
Sbjct: 26 LKPLKNMVGSASIVGLGEATHGAHEVFTMK 55
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast
fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 267
Score = 22.7 bits (48), Expect = 6.1
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 7 RHRESGRYSGGNKRKLSTAMALIGDP 32
+H+ G++ ++++ G P
Sbjct: 237 QHKFEIENKDGSRETRTSSLCEYGAP 262
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
BC3205 {Bacillus cereus [TaxId: 1396]}
Length = 413
Score = 22.6 bits (48), Expect = 6.2
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 22 LSTAMALIGDPPLVFLDEPTSGVDPISRHR 51
L +IG+ V L E T G I +
Sbjct: 32 LKPLKKMIGNAQYVGLGENTHGSSEIFTMK 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,755
Number of extensions: 8793
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 27
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.9 bits)