BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8580
         (274 letters)

Database: pdbaa 
           65,211 sequences; 15,674,573 total letters

Searching..................................................done



>pdb|2EQN|A Chain A, Solution Structure Of The Naf1 Domain Of Hypothetical
           Protein Bc008207 [homo Sapiens]
          Length = 103

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 67/98 (68%), Gaps = 2/98 (2%)

Query: 13  GDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLG 71
           G+LP +E+L I +PED  L P+G + +I++ LV+I+++ N P ++ ++V+F    +++ G
Sbjct: 7   GELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIF-KSDRQAAG 65

Query: 72  KIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA 109
           KIF++ GPV+ P Y +RFNS  HI    IKI + +Y A
Sbjct: 66  KIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFA 103


  Database: pdbaa
    Posted date:  Jul 29, 2013  4:35 PM
  Number of letters in database: 15,674,573
  Number of sequences in database:  65,211
  
Lambda     K      H
   0.316    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,773,011
Number of Sequences: 65211
Number of extensions: 304662
Number of successful extensions: 514
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 5
length of query: 274
length of database: 15,674,573
effective HSP length: 98
effective length of query: 176
effective length of database: 9,283,895
effective search space: 1633965520
effective search space used: 1633965520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)