BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8580
(274 letters)
Database: swissprot
455,621 sequences; 169,969,125 total letters
Searching..................................................done
>gi|74869367|sp|Q9VJ62.2|NAF1_DROME RecName: Full=H/ACA ribonucleoprotein complex non-core subunit NAF1
Length = 564
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 125/169 (73%)
Query: 7 KGELDLGDLPPIEDLQISVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKG 66
+GE+ L DLPPI L+I+VPED+C+ +GK+ +IVD LVL+ L N+ DLD+VLFL+KG
Sbjct: 263 RGEMLLDDLPPIHQLEITVPEDECVELGKVQSIVDQLVLVSVLPNSMLFDLDTVLFLEKG 322
Query: 67 QRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKV 126
++ LG++FDV+G VS P+YCVRFNS++ I+D IKI VYCAP+TEHT +V L L++V
Sbjct: 323 RKVLGEVFDVLGQVSDPLYCVRFNSNKQILDRGIKIGDVVYCAPKTEHTQFVILSKLMQV 382
Query: 127 KGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTD 175
+GSDASWE D EPP V+ SDDEEER + Q + R T+STD D
Sbjct: 383 RGSDASWEHDVEPPARYVDHSDDEEEREARAEQRKRRQRDRTNSTDSVD 431
>gi|81909058|sp|Q52KK4.1|NAF1_RAT RecName: Full=H/ACA ribonucleoprotein complex non-core subunit NAF1
Length = 457
Score = 140 bits (353), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 111/164 (67%), Gaps = 6/164 (3%)
Query: 5 RNKGELDLGDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
+ K EL L +LP +E+L +++PED L P+GK+ +I++ LV+I+++ N P ++ D+V+F
Sbjct: 137 KTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVIFK 196
Query: 64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
Q + GKIF++ GPV+ P Y +RFNS +HI IKI +Y AP + T Y+
Sbjct: 197 SDRQ-AAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFTEK 255
Query: 123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRV---KRNQLRTR 163
L + +GSDASW+ DQEPPPE ++FSDDE+E+ K++Q++ R
Sbjct: 256 LKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQGR 299
>gi|166233265|sp|Q3UMQ8.2|NAF1_MOUSE RecName: Full=H/ACA ribonucleoprotein complex non-core subunit NAF1
Length = 489
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 111/164 (67%), Gaps = 6/164 (3%)
Query: 5 RNKGELDLGDLPPIEDLQISVPEDQCL-PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
+ K EL L +LP +E+L + +PED L P+GK+ +I++ LV+I+++ N P ++ D+V+F
Sbjct: 165 KTKDELLLNELPSVEELTVILPEDIALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVIFK 224
Query: 64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
Q + GKIF++ GPV+ P Y +RFNS HI IKI+ +Y AP + T Y+
Sbjct: 225 SDRQ-AAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMKDFTQYIFTEK 283
Query: 123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRV---KRNQLRTR 163
L + +GSDASW+ DQEPPPEV++FSDDE+E+ K++Q++ R
Sbjct: 284 LKQDRGSDASWKNDQEPPPEVLDFSDDEKEKEAKQRKKSQIQGR 327
>gi|296439238|sp|Q96HR8.2|NAF1_HUMAN RecName: Full=H/ACA ribonucleoprotein complex non-core subunit
NAF1; Short=hNAF1
Length = 494
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 5 RNKGELDLGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFL 63
+ K EL L +LP +E+L I +PED + P+G + +I++ LV+I+++ N P ++ ++V+F
Sbjct: 172 KTKDELLLNELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFK 231
Query: 64 DKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQT-EHTSYVPLPD 122
Q + GKIF++ GPV+ P Y +RFNS HI IKI + +Y AP + T Y+
Sbjct: 232 SDRQ-AAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMKDFTQYIFTEK 290
Query: 123 LIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRNTSSTDGTDP 176
L + KGSDASW+ DQEPPPE ++FSDDE+E+ K+ + R ++ +P
Sbjct: 291 LKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQGRKKLKSEFNEP 344
>gi|3219924|sp|O14360.1|NAF1_SCHPO RecName: Full=H/ACA ribonucleoprotein complex non-core subunit
NAF1; AltName: Full=Nuclear assembly factor 1
Length = 516
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 32 PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSL-GKIFDVIGPVSGPVYCVRFN 90
P+GKI+ ++ V++K+ + + D L RS+ G I + GPVS P Y VRF+
Sbjct: 252 PLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCFEDRSIIGYIHETFGPVSSPYYIVRFS 311
Query: 91 SHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEPPPEVVEFSDDE 150
+ + N + + V+ P T P P L +KGSDAS D+E P EFSDDE
Sbjct: 312 TEEECSAINACMGRPVFYVP-TMANKIDPEP-LKYIKGSDASNVYDEEINPSEQEFSDDE 369
Query: 151 EE 152
E
Sbjct: 370 AE 371
>gi|229891124|sp|A6ZRW0.1|NAF1_YEAS7 RecName: Full=H/ACA ribonucleoprotein complex non-core subunit
NAF1; AltName: Full=Nuclear assembly factor 1
Length = 492
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 19 EDLQISVPEDQCLPVGKILNIVDTLVLI-KTLKNTPTLDLDSVLFLDKGQRSLGKIFDVI 77
ED +IS + P+G + + + ++I T+ + + +F + + +G + +V
Sbjct: 127 EDYEISE-KTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVF 185
Query: 78 GPVSGPVYCVRF-NSHQHIVDS-NIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWER 135
GP+ P Y ++ +S +++ D +++ + + H ++ +L + KG+DAS
Sbjct: 186 GPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPDAH--WIDTFELKRNKGTDASNGY 243
Query: 136 DQEPPPEVVEFSDDEEE 152
D+E P E EFSDDE+E
Sbjct: 244 DEELPEEEQEFSDDEKE 260
>gi|1730772|sp|P53919.1|NAF1_YEAST RecName: Full=H/ACA ribonucleoprotein complex non-core subunit
NAF1; AltName: Full=Nuclear assembly factor 1
Length = 492
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 19 EDLQISVPEDQCLPVGKILNIVDTLVLI-KTLKNTPTLDLDSVLFLDKGQRSLGKIFDVI 77
ED +IS + P+G + + + ++I T+ + + +F + + +G + +V
Sbjct: 127 EDYEISE-KTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLEDRTLIGMLTEVF 185
Query: 78 GPVSGPVYCVRF-NSHQHIVDS-NIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWER 135
GP+ P Y ++ +S +++ D +++ + + H ++ +L + KG+DAS
Sbjct: 186 GPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPDAH--WIDTFELKRNKGTDASNGY 243
Query: 136 DQEPPPEVVEFSDDEEE 152
D+E P E EFSDDE+E
Sbjct: 244 DEELPEEEQEFSDDEKE 260
>gi|1711516|sp|P20424.2|SRP54_YEAST RecName: Full=Signal recognition particle subunit SRP54; AltName:
Full=Signal recognition particle 54 kDa protein homolog
Length = 541
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 183 PKTRRPTPFEQRMNLRNLLMTASYERRNRINDTATTSRPANKSFTPGSIIRAPTLPDIPP 242
K + FE M L M A R+ TAT +P PG+ R P +P++P
Sbjct: 413 AKGSGTSVFEVEMILMQQQMMA------RMAQTATQQQPG----APGANARMPGMPNMPG 462
Query: 243 LPLPMSQPSAPP-PRFTPPQHQHQQE 267
+P P+ P P+ TP Q Q+
Sbjct: 463 MPNMPGMPNMPGMPKVTPQMMQQAQQ 488
Database: swissprot
Posted date: Jul 29, 2013 6:00 PM
Number of letters in database: 169,969,125
Number of sequences in database: 455,621
Lambda K H
0.315 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,791,861
Number of Sequences: 455621
Number of extensions: 4923192
Number of successful extensions: 25814
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 400
Number of HSP's that attempted gapping in prelim test: 23198
Number of HSP's gapped (non-prelim): 2556
length of query: 274
length of database: 169,969,125
effective HSP length: 115
effective length of query: 159
effective length of database: 117,572,710
effective search space: 18694060890
effective search space used: 18694060890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)