Query psy8580
Match_columns 274
No_of_seqs 153 out of 346
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:27:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v3m_A NAF1; ribosomal protein 100.0 1.1E-35 3.9E-40 248.0 9.6 121 1-125 1-126 (131)
2 2eqn_A Hypothetical protein LO 100.0 6.7E-31 2.3E-35 211.1 10.1 97 12-109 6-103 (103)
3 3u28_C H/ACA ribonucleoprotein 99.8 7.5E-20 2.6E-24 149.6 10.7 84 24-111 21-104 (114)
4 2ey4_C Small nucleolar RNP sim 99.7 6E-18 2.1E-22 131.1 8.5 75 28-110 6-81 (82)
5 2hvy_B GAR1, small nucleolar R 99.7 2E-17 6.9E-22 133.4 10.2 76 28-111 6-82 (104)
6 2a7y_A Hypothetical protein RV 41.4 26 0.0009 27.0 3.8 38 40-90 8-45 (83)
7 2f1l_A 16S rRNA processing pro 40.2 1.2E+02 0.0043 25.6 8.3 83 26-110 16-102 (187)
8 2pi2_E Replication protein A 1 36.6 37 0.0013 28.0 4.3 48 29-82 45-96 (142)
9 2xmf_A Myosin 1E SH3; motor pr 35.4 35 0.0012 22.7 3.4 33 78-110 1-34 (60)
10 4gop_A Putative uncharacterize 31.3 38 0.0013 26.7 3.4 58 29-91 20-83 (114)
11 3p8c_D Wiskott-aldrich syndrom 27.9 24 0.00082 32.5 1.9 12 193-204 213-224 (279)
12 3h43_A Proteasome-activating n 26.8 1.2E+02 0.0041 22.7 5.3 43 31-73 19-75 (85)
13 1wb1_A Translation elongation 26.5 23 0.00079 33.8 1.6 66 33-109 408-476 (482)
14 3h9n_A Ribosome maturation fac 21.3 1.2E+02 0.0042 25.2 4.9 33 57-90 101-133 (177)
15 3kdf_A Replication protein A 1 20.6 1.1E+02 0.0038 24.3 4.3 53 29-88 24-80 (121)
16 2dig_A Lamin-B receptor; tudor 20.2 1.1E+02 0.0036 22.8 3.7 27 58-92 25-51 (68)
17 3gqb_A V-type ATP synthase alp 20.1 3.1E+02 0.011 27.6 8.3 65 33-109 3-67 (578)
18 2lkw_A Membrane fusion protein 20.1 35 0.0012 20.7 0.9 11 247-257 7-17 (26)
No 1
>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=248.05 Aligned_cols=121 Identities=14% Similarity=0.361 Sum_probs=83.5
Q ss_pred CCCCcccCCCCCCCCCCCCCccccC-CCCceeeceeEEeeecCeEEEEeCCC--CCCCCCCCeEEecCCCeeeEEEEeee
Q psy8580 1 MKSTRNKGELDLGDLPPIEDLQISV-PEDQCLPVGKILNIVDTLVLIKTLKN--TPTLDLDSVLFLDKGQRSLGKIFDVI 77 (274)
Q Consensus 1 ~~~~rTknEl~~e~LPpi~~l~i~l-Pe~~I~~LGtV~sIVe~~VVVks~~~--~~VLd~gSvLclEnDRt~IGkV~EVF 77 (274)
|.|+|||||+..+.||++|+ .++| |+++|++||+|+|+|++.+||++..+ .++|++||+||+| ||++||+|+|||
T Consensus 1 ~~p~rtknE~~~~~~p~~p~-~~~i~~~~~v~~lG~i~~ive~~vVik~~~~g~~~vl~~~s~l~le-dr~~IGkV~EiF 78 (131)
T 2v3m_A 1 MGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCLE-DRTLIGMLTEVF 78 (131)
T ss_dssp --------------CCCCCT-TCCCCTTSCEEEEEEEEEEETTEEEEEEC-----CCCCTTCEEEET-TCCEEEECCEEE
T ss_pred CCCcccccccccccCCCCCC-ceecCCCCEEEEeeeEEEEeCCcEEEEecCCCCccccCCCCEEEec-CCcEEEEEEEEe
Confidence 78999999998888999995 3455 45689999999999999999999863 4899999999999 599999999999
Q ss_pred cCCCCcEEEEEeCCC--cccccccccCCCeeeecCCCCceeeccCccccc
Q psy8580 78 GPVSGPVYCVRFNSH--QHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIK 125 (274)
Q Consensus 78 GPV~~PyYsVRfns~--e~I~~~~l~vG~kVYyvP~~~~t~~V~t~~l~~ 125 (274)
|||++|||+|||+++ +++.+.++++|++|||+| +|++||++.+|+.
T Consensus 79 GpV~~P~ysVk~~~~~~e~i~~~~~~~G~kvY~~~--~~s~fv~t~~~~~ 126 (131)
T 2v3m_A 79 GPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVT--PDAHWIDTFELKH 126 (131)
T ss_dssp SCSSSCEEEEECCGGGHHHHHHHHTTTTSEEEEEC---------------
T ss_pred CCCCCcEEEEEeCCcchhhhhhcccCCCCEEEECc--CccceEechhhcc
Confidence 999999999999977 678888999999999998 5899999999974
No 2
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=6.7e-31 Score=211.14 Aligned_cols=97 Identities=40% Similarity=0.828 Sum_probs=92.7
Q ss_pred CCCCCCCCCccccCCCC-ceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeC
Q psy8580 12 LGDLPPIEDLQISVPED-QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFN 90 (274)
Q Consensus 12 ~e~LPpi~~l~i~lPe~-~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfn 90 (274)
+++|||+|+++|++|++ +|++||+|+|+|++.+||++....++|++||+||+| ||+.||+|+||||||++|||+|||+
T Consensus 6 ~~~lPp~~~~~i~~~~~~~v~~lG~v~~~~e~~vvik~~~~~~vl~~~s~l~~e-dk~~IGkV~EiFGpV~~PyysVk~~ 84 (103)
T 2eqn_A 6 SGELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFN 84 (103)
T ss_dssp SCCCSSCCCCCCBCCTTSCCEEEEEEEEECSSSEEEEECSSCCCCCTTCEEECT-TSBEEEEEEEEESCSSSCEEEECCS
T ss_pred cccCCCCCCcceEcCCCCeeEEeEEEEEEcCCeEEEEeCCCCcCCcCCCEEEec-CCcEEEEEEEEECCCCCCEEEEEeC
Confidence 58999999999999887 999999999999999999999888899999999999 5999999999999999999999999
Q ss_pred CCcccccccccCCCeeeec
Q psy8580 91 SHQHIVDSNIKIDQDVYCA 109 (274)
Q Consensus 91 s~e~I~~~~l~vG~kVYyv 109 (274)
+.+++.+.++++|++|||+
T Consensus 85 ~~~~i~a~~~~~G~kvY~~ 103 (103)
T 2eqn_A 85 SSDHIESKGIKIKETMYFA 103 (103)
T ss_dssp SHHHHHHHTCCTTCEEEEC
T ss_pred cccccccccccCCCEEEeC
Confidence 9889988999999999995
No 3
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=99.81 E-value=7.5e-20 Score=149.59 Aligned_cols=84 Identities=17% Similarity=0.428 Sum_probs=75.8
Q ss_pred cCCCCceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCC
Q psy8580 24 SVPEDQCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKID 103 (274)
Q Consensus 24 ~lPe~~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG 103 (274)
+-|++++++||+++|.|++.+||+++. ..++.+|+.||++| ++.||+|+|||||+++||++|++. +.+.+.++++|
T Consensus 21 ~gpp~~v~elG~f~H~ceg~lV~k~~~-~~VP~fNapVy~en-K~~IGKVdEIFGPin~~YfsVK~~--~gv~a~Sfk~g 96 (114)
T 3u28_C 21 MGPPDTVLEMGAFLHPCEGDIVCRSIN-TKIPYFNAPIYLEN-KTQVGKVDEILGPLNEVFFTIKCG--DGVQATSFKEG 96 (114)
T ss_dssp --CCSCEEEEEEEEEEETTEEEEEECS-SSEECTTCEEECTT-CCEEEEEEEEESBTTSCEEEEEEC--TTCCGGGCCTT
T ss_pred CCCCHHHheeeeEEEEeCCeEEEEeCC-CCCCCCCCEeEccC-CccceeEeEEeCCCCccEEEEEec--CCCcccccccC
Confidence 358899999999999999999999985 47999999999995 999999999999999999999988 56666789999
Q ss_pred CeeeecCC
Q psy8580 104 QDVYCAPQ 111 (274)
Q Consensus 104 ~kVYyvP~ 111 (274)
++||+++.
T Consensus 97 dk~YId~~ 104 (114)
T 3u28_C 97 DKFYIAAD 104 (114)
T ss_dssp CEEEEEGG
T ss_pred CEEEECcc
Confidence 99999975
No 4
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=99.73 E-value=6e-18 Score=131.13 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=65.1
Q ss_pred CceeeceeEEeee-cCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCee
Q psy8580 28 DQCLPVGKILNIV-DTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDV 106 (274)
Q Consensus 28 ~~I~~LGtV~sIV-e~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kV 106 (274)
++|++||+|+|+| ++.+||+++ .++.+|+.||+++ ++.||+|+||||||++||++|++.+. ...++ +|++|
T Consensus 6 ~~mk~lG~~~h~~~~g~lV~k~~---~~P~~na~Vy~e~-~~~IGkV~dIfGPv~~pY~sVk~~~~---~~~s~-~g~kl 77 (82)
T 2ey4_C 6 EKMKRLGKVLHYAKQGFLIVRTN---WVPSLNDRVVDKR-LQFVGIVKDVFGPVKMPYVAIKPKVS---NPEIY-VGEVL 77 (82)
T ss_dssp --CBCCCCEEEEETTTEEEEECS---SCCCTTCEEECTT-CCCCEEEEEEEEESSSCEEEEEECSS---SCSTT-BTCCC
T ss_pred ceeEEeEEEEEEcCCCCEEEEeC---CCCCCCCEeEcCC-CCEeEEEEEEECCCCCcEEEEEeCCC---Chhhc-CCCeE
Confidence 4799999999999 999999985 6999999999995 99999999999999999999999852 23455 99999
Q ss_pred eecC
Q psy8580 107 YCAP 110 (274)
Q Consensus 107 YyvP 110 (274)
|++|
T Consensus 78 Yi~~ 81 (82)
T 2ey4_C 78 YVDE 81 (82)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9986
No 5
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=99.72 E-value=2e-17 Score=133.38 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=64.9
Q ss_pred CceeeceeEEeee-cCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCee
Q psy8580 28 DQCLPVGKILNIV-DTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDV 106 (274)
Q Consensus 28 ~~I~~LGtV~sIV-e~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kV 106 (274)
++|++||+|+|+| ++.+||+++ .++.+|+.||+++ ++.||+|+||||||++||++|++.+. . ....+|++|
T Consensus 6 ~~mk~lG~~~H~~~~g~lVvk~~---~vP~~na~Vy~en-k~~IGKV~DIfGPV~~pY~sVKp~~~-s---~~~~~G~kl 77 (104)
T 2hvy_B 6 EKMKRLGKVLHYAKQGFLIVRTN---WVPSLNDRVVDKR-LQFVGIVKDVFGPVKMPYVAIKPKVS-N---PEIYVGEVL 77 (104)
T ss_dssp --CEEEEEEEEEETTTEEEEECS---SCCCTTCEEECTT-CCEEEEEEEEEEESSSCEEEEEECSS-C---GGGGTTCEE
T ss_pred ceeeEeEEEEEEcCCCCEEEEeC---CCCCCCCEeEcCC-CCEeEEEEEEECCCCCcEEEEEecCC-C---ccccCCCEE
Confidence 4799999999999 999999985 6999999999995 99999999999999999999999852 1 122299999
Q ss_pred eecCC
Q psy8580 107 YCAPQ 111 (274)
Q Consensus 107 YyvP~ 111 (274)
|+.+.
T Consensus 78 YI~~~ 82 (104)
T 2hvy_B 78 YVDER 82 (104)
T ss_dssp EECC-
T ss_pred EEcCc
Confidence 99975
No 6
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=41.42 E-value=26 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=29.0
Q ss_pred ecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeC
Q psy8580 40 VDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFN 90 (274)
Q Consensus 40 Ve~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfn 90 (274)
+++.|||++.... .-...|.|.||-|+--.|=|.|||.
T Consensus 8 vGDrlvv~g~~vg-------------~~~R~GeIvEV~g~dG~PPY~VRw~ 45 (83)
T 2a7y_A 8 VGDYLVVKGTTTE-------------RHDQHAEIIEVRSADGSPPYVVRWL 45 (83)
T ss_dssp TTEEEEESCTTTS-------------CCEEEEEEEECSCSSSCSCEEEEET
T ss_pred CCCEEEEecCcCC-------------CCCcEEEEEEEECCCCCCCEEEEec
Confidence 3556677765321 2457899999999999999999984
No 7
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=40.24 E-value=1.2e+02 Score=25.57 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=51.8
Q ss_pred CCCceeeceeEEeeec--CeEEEEeCCCCC-CCCCCCeEEecCCCeee-EEEEeeecCCCCcEEEEEeCCCccccccccc
Q psy8580 26 PEDQCLPVGKILNIVD--TLVLIKTLKNTP-TLDLDSVLFLDKGQRSL-GKIFDVIGPVSGPVYCVRFNSHQHIVDSNIK 101 (274)
Q Consensus 26 Pe~~I~~LGtV~sIVe--~~VVVks~~~~~-VLd~gSvLclEnDRt~I-GkV~EVFGPV~~PyYsVRfns~e~I~~~~l~ 101 (274)
|++....+|+|.+.-+ +-|-|++....+ .+..+..++++.++... =.|...= ...=.+.|+|..-..+.+...-
T Consensus 16 ~~~~~v~VG~I~~~hGikGeVkV~~~Td~pe~~~~~~~~~l~~~~~~~~~~v~~~r--~~~~~~ivkf~gi~dr~~Ae~L 93 (187)
T 2f1l_A 16 PADDLVVIGKIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGR--LHGKVLAAKLKGLDDREEARTF 93 (187)
T ss_dssp ---CEEEEEEEEEEETTTTEEEEEECSSSGGGGGGCCEEEEEETTEEEEEEEEEEE--EETTEEEEEETTCCSHHHHHTT
T ss_pred CCCCEEEEEEEeCCEeeCEEEEEEECCCCHHHhccCCEEEEecCCcEEEEEEEEEE--EECCEEEEEEeCCCCHHHHHHh
Confidence 6678889999999976 788898876532 34445666664322211 1222221 1233788999877666666677
Q ss_pred CCCeeeecC
Q psy8580 102 IDQDVYCAP 110 (274)
Q Consensus 102 vG~kVYyvP 110 (274)
.|..||+.-
T Consensus 94 ~G~~l~v~r 102 (187)
T 2f1l_A 94 TGYEICIPR 102 (187)
T ss_dssp TTCEEEEEG
T ss_pred CCCEEEEEH
Confidence 999999864
No 8
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=36.62 E-value=37 Score=28.01 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=32.1
Q ss_pred ceeeceeEEee--ecCeEEEEeCCCCCCCCCCCeEEecCC--CeeeEEEEeeecCCCC
Q psy8580 29 QCLPVGKILNI--VDTLVLIKTLKNTPTLDLDSVLFLDKG--QRSLGKIFDVIGPVSG 82 (274)
Q Consensus 29 ~I~~LGtV~sI--Ve~~VVVks~~~~~VLd~gSvLclEnD--Rt~IGkV~EVFGPV~~ 82 (274)
.+.-+|+|.++ -++.+++++..+. .+.|.-+. ...+|.+.||.|-|+.
T Consensus 45 ~VriVGkV~~~~~~G~~~~l~s~Dg~------~VtV~l~~pL~~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 45 PVCFVGRLEKIHPTGKMFILSDGEGK------NGTIELMEPLDEEISGIVEVVGRVTA 96 (142)
T ss_dssp EEEEEEEEEEECTTSSEEEEECTTSC------EEEEECSSCCSSCCCSEEEEEEEECT
T ss_pred EEEEEEEEeEEcCCCCEEEEEeCCCc------EEEEEeCCCCCccCCCEEEEEEEECC
Confidence 46779999999 6788999987542 22232111 1346778888888866
No 9
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=35.40 E-value=35 Score=22.70 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=24.1
Q ss_pred cCCCCcEEEEEeCCC-cccccccccCCCeeeecC
Q psy8580 78 GPVSGPVYCVRFNSH-QHIVDSNIKIDQDVYCAP 110 (274)
Q Consensus 78 GPV~~PyYsVRfns~-e~I~~~~l~vG~kVYyvP 110 (274)
||+..+++.+.++-. ..-.++.++.|+.|++..
T Consensus 1 gp~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~ 34 (60)
T 2xmf_A 1 GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIK 34 (60)
T ss_dssp CCSCSCEEEESSCBCCSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcEEEECccCCcCCcCCcCCCCCCEEEEEE
Confidence 788888888876622 233457899999998864
No 10
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=31.32 E-value=38 Score=26.73 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=37.9
Q ss_pred ceeeceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCe-eeEEEEeeecCCCCc-----EEEEEeCC
Q psy8580 29 QCLPVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQR-SLGKIFDVIGPVSGP-----VYCVRFNS 91 (274)
Q Consensus 29 ~I~~LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt-~IGkV~EVFGPV~~P-----yYsVRfns 91 (274)
.+.-+|+|.++-++.+++++.....|- +...+ +-. .+|.+.||.|-|+.- =-+|+..+
T Consensus 20 ~VrivGkV~~~~g~~~~l~s~d~~~Vt----v~l~~-~~~~~~~~~vEViG~V~~~~~~~~~~~I~~~~ 83 (114)
T 4gop_A 20 TVRIVGKVHKVTGNTLLMQTSDLGNVE----IAMTP-DSDVSSSTFVEVTGKVSDAGSSFQANQIREFT 83 (114)
T ss_dssp EEEEEEEEEEEETTEEEEECTTSCEEE----EECCS-SCCGGGCSEEEEEEEECTTSSEEEEEEEEECS
T ss_pred eEEEEEEEeeeCCCEEEEEeCCCCEEE----EEeCC-CCCcccCcEEEEEEEEcCCCCcccCCeEEEEE
Confidence 467799999999999999987543221 11111 122 268899999988854 16666543
No 11
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=27.88 E-value=24 Score=32.49 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=6.9
Q ss_pred ccCCcccccchh
Q psy8580 193 QRMNLRNLLMTA 204 (274)
Q Consensus 193 ~~~~~r~~~~~~ 204 (274)
...++|+.|+-+
T Consensus 213 ~~~~~rs~Ll~a 224 (279)
T 3p8c_D 213 VISDARSVLLEA 224 (279)
T ss_dssp ----CSCHHHHH
T ss_pred CccchHHHHHHH
Confidence 356789999877
No 12
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=26.80 E-value=1.2e+02 Score=22.69 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=29.3
Q ss_pred eeceeEEeeec-CeEEEEeCCC------------CCCCCCCCeEEecC-CCeeeEEE
Q psy8580 31 LPVGKILNIVD-TLVLIKTLKN------------TPTLDLDSVLFLDK-GQRSLGKI 73 (274)
Q Consensus 31 ~~LGtV~sIVe-~~VVVks~~~------------~~VLd~gSvLclEn-DRt~IGkV 73 (274)
..+|+|..++| +.+||+++.+ ..-|..|+.|.+.+ .-++++..
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vL 75 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVL 75 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEEC
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhh
Confidence 46899999987 6689986543 14678899999853 23444443
No 13
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=26.53 E-value=23 Score=33.77 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=48.1
Q ss_pred ceeEEeeecCeEEEEeCCC---CCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCeeeec
Q psy8580 33 VGKILNIVDTLVLIKTLKN---TPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA 109 (274)
Q Consensus 33 LGtV~sIVe~~VVVks~~~---~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kVYyv 109 (274)
.|.|. +-++.+||++.-. ....-.|-.|++. .+.+.|.|.+.||. +=+|.|.|+ .++..+|.|++-
T Consensus 408 ~g~v~-~~~~~~i~~~lf~~~~~~~~f~g~~v~~~-~g~~~G~I~~~fg~--~G~~~~~f~-------~~~~~~d~v~~~ 476 (482)
T 1wb1_A 408 EGKVK-IDKGRTVIDGLAQSKVAAEKLIGEEISIE-GKDIVGKIKGTFGT--KGLLTAEFS-------GNVENRDKVILN 476 (482)
T ss_dssp EEEEE-CCSSCCEETTSCSSHHHHHHSCSCCCEET-TTCCCBCCCCCBTT--TTBBCCCBS-------SCCCSSCEEEEE
T ss_pred cCcEE-EcCCEEEEEcCccchhhhHHhcCcEEEEc-CCceEEEEeccCCC--CceEEEEec-------CCCCCCCeeeee
Confidence 46666 4457788887533 2344568888997 57679999999999 457888888 347788888874
No 14
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=21.27 E-value=1.2e+02 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeC
Q psy8580 57 LDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFN 90 (274)
Q Consensus 57 ~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfn 90 (274)
+|--|+.+ ++..||+|.+|+=.-.+..|.|+.+
T Consensus 101 iGl~V~~~-~g~~lG~V~~v~~~gandvl~V~~~ 133 (177)
T 3h9n_A 101 IGCTVVNL-EGYTMGTVTEMMETGSNDVLVVKAN 133 (177)
T ss_dssp TTCEEEET-TCCEEEEEEEEEESSSCEEEEEECC
T ss_pred cCCEEEeC-CCCEEEEEEEEeeCCCcEEEEEEec
Confidence 34567776 5889999999998888999999964
No 15
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=20.59 E-value=1.1e+02 Score=24.28 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=31.7
Q ss_pred ceeeceeEEeee--cCeEEEEeCCCCCCCCCCCeEEecCC--CeeeEEEEeeecCCCCcEEEEE
Q psy8580 29 QCLPVGKILNIV--DTLVLIKTLKNTPTLDLDSVLFLDKG--QRSLGKIFDVIGPVSGPVYCVR 88 (274)
Q Consensus 29 ~I~~LGtV~sIV--e~~VVVks~~~~~VLd~gSvLclEnD--Rt~IGkV~EVFGPV~~PyYsVR 88 (274)
.+.-+|+|.++- ++.+++++..+. .+-+.-+. ...++.+.||.|-|+.. -+|+
T Consensus 24 ~VrivGkV~~~~~~g~~~~l~s~Dg~------~Vtv~l~~p~~~~l~~~vEViG~V~~~-~tI~ 80 (121)
T 3kdf_A 24 PVCFVGRLEKIHPTGKMFILSDGEGK------NGTIELMEPLDEEISGIVEVVGRVTAK-ATIL 80 (121)
T ss_dssp EEEEEEEEEEECTTSSEEEEECTTSC------EEEEECSSCCSSCCCSEEEEEEEECTT-SCEE
T ss_pred eEEEEEEEEEEcCCCCEEEEEeCCCC------EEEEEeCCCCCcccCcEEEEEEEECCC-CeEE
Confidence 467799999985 677888887542 11121110 12335577888888764 2444
No 16
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.24 E-value=1.1e+02 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=19.5
Q ss_pred CCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCC
Q psy8580 58 DSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSH 92 (274)
Q Consensus 58 gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~ 92 (274)
|+-+|.+ ++|..+= -++|.|.|+|.+.
T Consensus 25 Gd~~yYp------arItSit--s~~~~Y~VkfKdg 51 (68)
T 2dig_A 25 GSSLYYE------VEILSHD--STSQLYTVKYKDG 51 (68)
T ss_dssp TTCCEEE------EEEEEEE--TTTTEEEEECTTS
T ss_pred CCccceE------EEEEEec--cCCceEEEEecCC
Confidence 6777776 2344444 8899999999974
No 17
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=20.07 E-value=3.1e+02 Score=27.56 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=46.2
Q ss_pred ceeEEeeecCeEEEEeCCCCCCCCCCCeEEecCCCeeeEEEEeeecCCCCcEEEEEeCCCcccccccccCCCeeeec
Q psy8580 33 VGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNSHQHIVDSNIKIDQDVYCA 109 (274)
Q Consensus 33 LGtV~sIVe~~VVVks~~~~~VLd~gSvLclEnDRt~IGkV~EVFGPV~~PyYsVRfns~e~I~~~~l~vG~kVYyv 109 (274)
.|+|.+|.+.+|.|.+.. -...|.++.+. +...+|.|..+-|-. -+.+-|.+. .++..|+.|+.-
T Consensus 3 ~G~V~~V~G~vv~v~g~~---~~~~gE~v~v~-~~~l~gEVi~~~~d~---~~i~v~e~t-----~Gl~~G~~V~~t 67 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGML---GARMYDISKVG-EEGLVGEIIRLDGDT---AFVQVYEDT-----SGLKVGEPVVST 67 (578)
T ss_dssp EEEEEEEETTEEEEESCT---TCCTTEEEEET-TTTEEEEEEEEETTE---EEEEESSCC-----TTCCTTCEEEEE
T ss_pred eeEEEEEECCEEEEEcCC---CCccCCEEEEC-CCcEEEEEEEEcCCc---EEEEEcCCC-----CCCCCCCEEEEC
Confidence 499999999999999864 25678888886 356888887776643 244444432 467889888653
No 18
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=20.06 E-value=35 Score=20.65 Aligned_cols=11 Identities=55% Similarity=1.072 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q psy8580 247 MSQPSAPPPRF 257 (274)
Q Consensus 247 ~~~~~~~~~~~ 257 (274)
.-||.+|||+.
T Consensus 7 ivqppapppna 17 (26)
T 2lkw_A 7 IVQPPAPPPNA 17 (26)
T ss_pred cccCCCcCCCe
Confidence 35788888874
Done!