RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8580
         (274 letters)



>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 73

 Score = 65.1 bits (159), Expect = 1e-14
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 32  PVGKILNIVDTLVLIKTLKNTPTLDLDSVLFLDKGQRSLGKIFDVIGPVSGPVYCVRFNS 91
            +GK+L+      LI      P   L+  +   + Q  +G + DV GPV  P   ++   
Sbjct: 3   RLGKVLHYAKQGFLIVRTNWVP--SLNDRVVDKRLQF-VGIVKDVFGPVKMPYVAIKPKV 59

Query: 92  HQHIVDSNIKIDQDVYC 108
                   I + + +Y 
Sbjct: 60  SNPE----IYVGEVLYV 72


>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 287

 Score = 28.0 bits (60), Expect = 1.3
 Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 4/39 (10%)

Query: 68  RSLGKIFDVIGPVSGPVYCVRFNSHQHIV----DSNIKI 102
           +   KI   +      V  + + +   +V    D+ IK 
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283


>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
           bifunctional isomerase/decarboxylase HpcE {Escherichia
           coli [TaxId: 562]}
          Length = 213

 Score = 27.2 bits (59), Expect = 1.9
 Identities = 8/67 (11%), Positives = 20/67 (29%)

Query: 80  VSGPVYCVRFNSHQHIVDSNIKIDQDVYCAPQTEHTSYVPLPDLIKVKGSDASWERDQEP 139
           + G ++ V  N    +        Q  Y AP      ++   + +   G    + + ++ 
Sbjct: 1   MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQGEKV 60

Query: 140 PPEVVEF 146
                  
Sbjct: 61  LSGATVA 67


>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
          Length = 89

 Score = 25.6 bits (56), Expect = 2.4
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 119 PLPDLIKVKGSDASWERDQEPPPEVVEFSDDEEERRVKRNQLR-TRNNRNTSS 170
           PL D +K    +   + + +   ++ E    E E+ +    ++ TR N   ++
Sbjct: 17  PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNATRAA 69


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 26.9 bits (59), Expect = 2.9
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 230 SIIRAPTLPDIPPLPLPMSQP-SAPPPRFTPP 260
            ++     P++   PLP ++  S P  R    
Sbjct: 478 VLLSRERKPELAEAPLPFAEVISGPEDRRLVL 509


>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 26.4 bits (58), Expect = 3.7
 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 7/56 (12%)

Query: 119 PLPDLIKVKGSDASWERDQEP-------PPEVVEFSDDEEERRVKRNQLRTRNNRN 167
           P   ++ V+        +  P           V   + E     K   L  R ++ 
Sbjct: 60  PQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAEFKSGNLSARVSKG 115


>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
           domain 1 {Propionibacterium freudenreichii, subsp.
           shermanii [TaxId: 1744]}
          Length = 557

 Score = 25.8 bits (56), Expect = 7.6
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 133 WERDQEPPPEVVEFSDDEEERRVKRNQLRTRNNRN 167
           +  + EPP +V++  +       K   ++ R  R+
Sbjct: 467 YRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERD 501


>d1cgme_ a.24.5.1 (E:) Cucumber green mottle mosaic virus {Cucumber
           green mottle mosaic virus, strain watermelon [TaxId:
           12235]}
          Length = 160

 Score = 24.8 bits (54), Expect = 8.7
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 158 NQLRTRNNRNTSSTDGTDPPDVPPEPKTRRPTPFEQRMNLRNL----LMTA---SYERRN 210
              +T+  R++     +  P    +  +R P        L       +  +   S + RN
Sbjct: 33  TAFQTQAGRDSFRESLSALPSSVVDINSRFPDA-GFYAFLNGPVLRPIFVSLLSSTDTRN 91

Query: 211 RINDTATTSRPAN 223
           R+ +    S P  
Sbjct: 92  RVIEVVDPSNPTT 104


>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
           virus type 2 [TaxId: 11909]}
          Length = 137

 Score = 24.4 bits (53), Expect = 9.7
 Identities = 8/39 (20%), Positives = 12/39 (30%)

Query: 231 IIRAPTLPDIPPLPLPMSQPSAPPPRFTPPQHQHQQETP 269
           +++    P  P  P+P        P   PP        P
Sbjct: 88  LVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,035,562
Number of extensions: 49089
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 14
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)