BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8581
(414 letters)
Database: pdbaa
65,211 sequences; 15,674,573 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 15/190 (7%)
Query: 48 GLGGIVSCGSTH-----TLVTPLDLVKCRLQVNAD-----KYKNLIHGFKVTVAEEGARG 97
G+G + GST + P D+VK R Q A +Y++ + +K EEG RG
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162
Query: 98 LARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEFFADI 157
L +G +P + + Y+ K D L + N + S+ A F +
Sbjct: 163 LWKGTSPNVARNAIVNCAELVTYDLIK----DTLLKANLMTDDLPCHFTSAFGAGFCTTV 218
Query: 158 ALSPMEAVKVKIQTTA-GFANTLREAVPKMYAQEGMNAFFKSLVPLWGRQIPYTMMKFAC 216
SP++ VK + +A G ++ M +EG AF+K +P + R + ++ F
Sbjct: 219 IASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 217 FERTVELLYA 226
+E+ L A
Sbjct: 279 YEQLKRALMA 288
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 113/296 (38%), Gaps = 43/296 (14%)
Query: 148 SASAEFFADIALSPMEAVKVKIQTTAGFANTLREAVPKMYA-----------QEGMNAFF 196
+ +A AD+ P++ KV++Q +R A Y EG + +
Sbjct: 8 AGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLY 67
Query: 197 KSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFC 256
LV RQ+ + ++ ++ +V+ Y K G +L+ AG G
Sbjct: 68 NGLVAGLQRQMSFASVRIGLYD-SVKQFYT----KGSEHAGIGSRLL----AGSTTGALA 118
Query: 257 AIVSHPADTLVSKLNQEKGASVGD-----------IVKKIGFGGLWKGLGPRIIMIGTLT 305
V+ P D + + + A G I ++ G GLWKG P + +
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 306 ALQWFIYDFVKSITEKG----EQLIVTFAAGYIAGVFCAIVSHPADTLVSK-LNQEKGA- 359
+ YD +K K + L F + + AG +++ P D + ++ +N G
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQY 238
Query: 360 -SVGD----IVKKIGFGGLWKGLGPRIIMIGTLTALQWFIFAR-DPEVVVMYQVEE 409
S G +++K G +KG P + +G+ + + + + ++ YQ E
Sbjct: 239 HSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 30/256 (11%)
Query: 44 FLLCGLGGIVSCGSTHTLVTPLDLVKCRLQV-------NADK-YKNLIHGFKVTVAEEGA 95
FL L G V+ + T V P++ VK LQV +A+K YK +I E+G
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 96 RGLARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDILG--EENTYLWRT-SLYLASSASAE 152
RG I Y F + +K ++ LG + + WR + LAS +A
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIF---LGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 153 FFADIALSPMEAVKVKIQTTAGFANTLRE------AVPKMYAQEGMNAFFKSLVPLWGRQ 206
+ + P++ + ++ G RE + K++ +G+ ++
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 207 IPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTL 266
I Y F ++ +L P P K +IV++ +VS+P DT+
Sbjct: 184 IIYRAAYFGVYDTAKGML-----PDP-----KNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233
Query: 267 VSKLNQEKGASVGDIV 282
++ + G DI+
Sbjct: 234 RRRMMMQSGRKGADIM 249
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 35/248 (14%)
Query: 144 YLASSASAEFFADIALSPMEAVKVKIQTTAGFANTLREA--------VPKMYAQEGMNAF 195
+LA +A + A++P+E VK+ +Q E V ++ ++G +F
Sbjct: 11 FLAGGVAAAI-SKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 196 FKSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFA----AGYI 251
++ + R P + FA ++ ++ V + +Q FA +G
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV--------DRHKQFWRYFAGNLASGGA 121
Query: 252 AGVFCAIVSHPADTLVSKLNQE--KGAS------VGDIVKKI----GFGGLWKGLGPRII 299
AG +P D ++L + KGA+ +G+ + KI G GL++G +
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181
Query: 300 MIGTLTALQWFIYDFVKSI--TEKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEK 357
I A + +YD K + K +IV++ +VS+P DT+ ++ +
Sbjct: 182 GIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241
Query: 358 GASVGDIV 365
G DI+
Sbjct: 242 GRKGADIM 249
>pdb|2CQ8|A Chain A, Solution Structure Of Rsgi Ruh-033, A Pp-Binding Domain Of
10-Fthfdh From Human Cdna
Length = 110
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 146 ASSASAEFFADIALSPMEAVKVKIQTTAGFANTLREAVPKMYAQEGMNAFFKS 198
SS S+ FF A S +E + ++ T + + +PK+ E FFKS
Sbjct: 1 GSSGSSGFFKGAASSVLELTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKS 53
Database: pdbaa
Posted date: Jul 29, 2013 4:35 PM
Number of letters in database: 15,674,573
Number of sequences in database: 65,211
Lambda K H
0.323 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,257,395
Number of Sequences: 65211
Number of extensions: 491878
Number of successful extensions: 1054
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 8
length of query: 414
length of database: 15,674,573
effective HSP length: 102
effective length of query: 312
effective length of database: 9,023,051
effective search space: 2815191912
effective search space used: 2815191912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)