Query psy8581
Match_columns 414
No_of_seqs 327 out of 2394
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 22:28:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3E-54 1E-58 405.7 21.1 255 144-407 4-291 (303)
2 1okc_A ADP, ATP carrier protei 100.0 6E-53 2.1E-57 395.9 25.2 259 139-402 5-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 7.8E-53 2.7E-57 395.1 21.7 266 42-318 5-296 (297)
4 2lck_A Mitochondrial uncouplin 100.0 4.2E-53 1.4E-57 397.8 18.9 262 47-321 4-288 (303)
5 3tgu_G UQCRQ, mitochondrial ub 37.2 30 0.001 24.3 3.3 39 369-407 33-71 (81)
6 3cx5_H Cytochrome B-C1 complex 26.8 52 0.0018 23.8 3.1 43 368-410 42-84 (93)
7 1pp9_G Ubiquinol-cytochrome C 26.2 53 0.0018 23.1 3.0 40 368-407 32-71 (81)
8 3vjj_A P9-1; 3.00A {Rice black 22.5 45 0.0015 29.2 2.4 34 337-370 273-308 (368)
9 3f2e_A SIRV coat protein; four 22.5 66 0.0023 22.1 2.8 37 169-205 1-41 (100)
10 3tgu_G UQCRQ, mitochondrial ub 20.3 1.3E+02 0.0043 21.1 4.0 41 190-230 32-72 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3e-54 Score=405.66 Aligned_cols=255 Identities=17% Similarity=0.352 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHhhhcChhHHHHHHHhcCCC-----------CcCcHHHHHHHHHHhhChHHhhhchhhHHhhhhccchh
Q psy8581 144 YLASSASAEFFADIALSPMEAVKVKIQTTAG-----------FANTLREAVPKMYAQEGMNAFFKSLVPLWGRQIPYTMM 212 (414)
Q Consensus 144 ~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~ 212 (414)
.+++|++|++++.++++|+|+||+|+|++.. .++++.+++++|+++||+++||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999753 57789999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHhccCCCCCCCcCCchhhHHHHHhhHHHHHHHHHhhchHHHHHHHhhcCCC-----------ccHHHH
Q psy8581 213 KFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKG-----------ASVGDI 281 (414)
Q Consensus 213 ~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pldvvktr~q~~~~-----------~~~~~i 281 (414)
+|.+||.+|+.+.+.. ...+....+++|++||++++++++|+|+||+|+|.+.. +++++|
T Consensus 84 ~f~~ye~~k~~~~~~~---------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i 154 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS---------EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTI 154 (303)
T ss_dssp TTTHHHHHHHHHSCCC---------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHH
Confidence 9999999999875321 12456778999999999999999999999999998652 578999
Q ss_pred HHhhCccccccchHHHHHHHHHHHHHHHHHHHHhHHHhhc----ChhhHHHHHHHHHHHHHHHhhcccHHHHHHHHhhcC
Q psy8581 282 VKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSITEK----GEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEK 357 (414)
Q Consensus 282 ~~~~G~~glyrG~~~~l~~~~~~~~~~~~~ye~~k~~~~~----~~~~~~~~~~g~~ag~~a~~~t~PlDviktr~q~~~ 357 (414)
+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+ ..+....+++|++||++++++++|+||||||+|++.
T Consensus 155 ~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 155 AREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998865 234668899999999999999999999999999875
Q ss_pred C-------chHHHHHHhhcccccccchHHHHHHHHhhHHHHHHHHhhhHHHHHhhhh
Q psy8581 358 G-------ASVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIFARDPEVVVMYQV 407 (414)
Q Consensus 358 ~-------~~~~~i~~~eG~~~lyrG~~~~~~r~~p~~~i~~~~ye~~~~~l~~~~~ 407 (414)
. +++++++|+||++|||||+.|+++|.+|.++++|.+||.+|+.+.....
T Consensus 235 ~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 235 LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 3 5799999999999999999999999999999999999999999865444
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6e-53 Score=395.86 Aligned_cols=259 Identities=19% Similarity=0.245 Sum_probs=225.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhcChhHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhChHHhhhchhhHHhhhhccc
Q psy8581 139 WRTSLYLASSASAEFFADIALSPMEAVKVKIQTTAG--------FANTLREAVPKMYAQEGMNAFFKSLVPLWGRQIPYT 210 (414)
Q Consensus 139 ~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~--------~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~ 210 (414)
.+....+++|++||+++.++++|+|++|+|+|++.. .++++.+++++|+++||++|||||+.+++++.+++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 355678999999999999999999999999998742 567899999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHhccCCCCCCCcCCchhhHHHHHhhHHHHHHHHHhhchHHHHHHHhhcCCC------------ccH
Q psy8581 211 MMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKG------------ASV 278 (414)
Q Consensus 211 ~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pldvvktr~q~~~~------------~~~ 278 (414)
+++|.+||.+|+.+...... +..........+++|++||++++++++|+|+||+|+|.+.. +++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDR----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCT----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccccCc----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 99999999999965432110 11112345678999999999999999999999999998631 578
Q ss_pred HHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHHhHHHhhc--ChhhHHHHHHHHHHHHHHHhhcccHHHHHHHHhhc
Q psy8581 279 GDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSITEK--GEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQE 356 (414)
Q Consensus 279 ~~i~~~~G~~glyrG~~~~l~~~~~~~~~~~~~ye~~k~~~~~--~~~~~~~~~~g~~ag~~a~~~t~PlDviktr~q~~ 356 (414)
++++++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+ ..+....+++|++||++++++++|+||||||+|++
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998754 33467789999999999999999999999999986
Q ss_pred CC------------chHHHHHHhhcccccccchHHHHHHHHhhHHHHHHHHhhhHHHH
Q psy8581 357 KG------------ASVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIFARDPEVV 402 (414)
Q Consensus 357 ~~------------~~~~~i~~~eG~~~lyrG~~~~~~r~~p~~~i~~~~ye~~~~~l 402 (414)
.. +++++|+|+||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 42 47899999999999999999999996 57899999999999864
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.8e-53 Score=395.08 Aligned_cols=266 Identities=20% Similarity=0.277 Sum_probs=229.8
Q ss_pred hHHHHhhhhHHHHhhhhccccchhHHHHHHHhcCcc--------CcCchHHHHHHHHHhhcccccccccccchhcccccc
Q psy8581 42 KYFLLCGLGGIVSCGSTHTLVTPLDLVKCRLQVNAD--------KYKNLIHGFKVTVAEEGARGLARGWAPTAIGYSAQG 113 (414)
Q Consensus 42 ~~~~~~~~ag~~a~~~~~~~~~Pld~iK~r~Q~~~~--------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 113 (414)
.+++..+++|+++++++.+++||||+||+|+|++.. .|+++++++++|+++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 456777888999999999999999999999999752 589999999999999999999999999999999999
Q ss_pred ceeeehhHHHHHHHhchhccccchhhhHHHHHHHHHHHHHHHhhhcChhHHHHHHHhcCC------CCcCcHHHHHHHHH
Q psy8581 114 LCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEFFADIALSPMEAVKVKIQTTA------GFANTLREAVPKMY 187 (414)
Q Consensus 114 ~i~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~q~~~------~~~~~~~~~~~~i~ 187 (414)
+++|.+||.+|+.+....+.+..........+++|++||+++.++++|+|+||+|+|++. ..++++.+++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 999999999999543322222222234567899999999999999999999999999974 25688999999999
Q ss_pred HhhChHHhhhchhhHHhhhhccchhhHhhHHHHHHHHHhccCCCCCCCcCCchhhHHHHHhhHHHHHHHHHhhchHHHHH
Q psy8581 188 AQEGMNAFFKSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLV 267 (414)
Q Consensus 188 ~~~G~~gly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pldvvk 267 (414)
++||++|||||+.+++++.+++.+++|.+||.+|+.+.+. ...+....+++|++||++++++++|+|+||
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvk 234 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCccHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999999865321 123456778999999999999999999999
Q ss_pred HHhhcCCC------------ccHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHHhHHH
Q psy8581 268 SKLNQEKG------------ASVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSI 318 (414)
Q Consensus 268 tr~q~~~~------------~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~~~~ye~~k~~ 318 (414)
+|+|.+.. +++++|+++||++|||||+.++++|. +..+++|.+||.+|++
T Consensus 235 tr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 235 RRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 99997631 57899999999999999999999996 5789999999999875
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.2e-53 Score=397.81 Aligned_cols=262 Identities=19% Similarity=0.295 Sum_probs=234.3
Q ss_pred hhhhHHHHhhhhccccchhHHHHHHHhcCcc-----------CcCchHHHHHHHHHhhcccccccccccchhccccccce
Q psy8581 47 CGLGGIVSCGSTHTLVTPLDLVKCRLQVNAD-----------KYKNLIHGFKVTVAEEGARGLARGWAPTAIGYSAQGLC 115 (414)
Q Consensus 47 ~~~ag~~a~~~~~~~~~Pld~iK~r~Q~~~~-----------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 115 (414)
.+++|++|++++.+++||||+||+|+|++.. .|+++++++++|+++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888999999999999999753 58899999999999999999999999999999999999
Q ss_pred eeehhHHHHHHHhchhccccchhhhHHHHHHHHHHHHHHHhhhcChhHHHHHHHhcCCC-----CcCcHHHHHHHHHHhh
Q psy8581 116 KFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEFFADIALSPMEAVKVKIQTTAG-----FANTLREAVPKMYAQE 190 (414)
Q Consensus 116 ~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~-----~~~~~~~~~~~i~~~~ 190 (414)
+|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|++.. .+++..+++++|+++|
T Consensus 84 ~f~~ye~~k~~~~~~~~-----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhc
Confidence 99999999998865311 1345678999999999999999999999999999763 5789999999999999
Q ss_pred ChHHhhhchhhHHhhhhccchhhHhhHHHHHHHHHhccCCCCCCCcCCchhhHHHHHhhHHHHHHHHHhhchHHHHHHHh
Q psy8581 191 GMNAFFKSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKL 270 (414)
Q Consensus 191 G~~gly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~Pldvvktr~ 270 (414)
|++|||||+.+++++.+++.+++|.+||.+|+.+.+.. ....+....+++|++||++++++++|+|+||+|+
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999999875421 1233456789999999999999999999999999
Q ss_pred hcCCC-------ccHHHHHHhhCccccccchHHHHHHHHHHHHHHHHHHHHhHHHhhc
Q psy8581 271 NQEKG-------ASVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSITEK 321 (414)
Q Consensus 271 q~~~~-------~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~~~~ye~~k~~~~~ 321 (414)
|.+.. +++++++++||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 231 q~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 231 MNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp TTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98752 6899999999999999999999999999999999999999987754
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=37.17 E-value=30 Score=24.31 Aligned_cols=39 Identities=3% Similarity=0.249 Sum_probs=32.1
Q ss_pred cccccccchHHHHHHHHhhHHHHHHHHhhhHHHHHhhhh
Q psy8581 369 GFGGLWKGLGPRIIMIGTLTALQWFIFARDPEVVVMYQV 407 (414)
Q Consensus 369 G~~~lyrG~~~~~~r~~p~~~i~~~~ye~~~~~l~~~~~ 407 (414)
|+...+|-+...+++++|..++.+.+|+..++.-+.++.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 556677778888888999999999999999988765543
No 6
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=26.85 E-value=52 Score=23.77 Aligned_cols=43 Identities=7% Similarity=0.203 Sum_probs=36.5
Q ss_pred hcccccccchHHHHHHHHhhHHHHHHHHhhhHHHHHhhhhccC
Q psy8581 368 IGFGGLWKGLGPRIIMIGTLTALQWFIFARDPEVVVMYQVEEG 410 (414)
Q Consensus 368 eG~~~lyrG~~~~~~r~~p~~~i~~~~ye~~~~~l~~~~~~~~ 410 (414)
.|+...+|-+.-+++.++|...+.+.+|+..++.-+.++.+.+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~KaG 84 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSKAG 84 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhcccc
Confidence 4677788888899999999999999999999998877665544
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.18 E-value=53 Score=23.06 Aligned_cols=40 Identities=5% Similarity=0.096 Sum_probs=33.1
Q ss_pred hcccccccchHHHHHHHHhhHHHHHHHHhhhHHHHHhhhh
Q psy8581 368 IGFGGLWKGLGPRIIMIGTLTALQWFIFARDPEVVVMYQV 407 (414)
Q Consensus 368 eG~~~lyrG~~~~~~r~~p~~~i~~~~ye~~~~~l~~~~~ 407 (414)
.|+...+|-+.-.++.++|..++.+.+|+..++.-+.++.
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~r 71 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKR 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhC
Confidence 4566778888888899999999999999999988865544
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=22.53 E-value=45 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHHhhcccHHHHHHHHhhcC--CchHHHHHHhhcc
Q psy8581 337 VFCAIVSHPADTLVSKLNQEK--GASVGDIVKKIGF 370 (414)
Q Consensus 337 ~~a~~~t~PlDviktr~q~~~--~~~~~~i~~~eG~ 370 (414)
.+|++--||||.+|-.++..- ...+.+.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcCc
Confidence 567888999999988777643 3568888888874
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=22.45 E-value=66 Score=22.08 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=21.7
Q ss_pred HhcCCCCcCcHHHHHHHHHHhhCh----HHhhhchhhHHhh
Q psy8581 169 IQTTAGFANTLREAVPKMYAQEGM----NAFFKSLVPLWGR 205 (414)
Q Consensus 169 ~q~~~~~~~~~~~~~~~i~~~~G~----~gly~G~~~~l~~ 205 (414)
||++-.++.+.-+-+..++.+-|+ |.+|.|++..+.|
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 566666777777777778888775 5678887766553
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=20.32 E-value=1.3e+02 Score=21.09 Aligned_cols=41 Identities=2% Similarity=0.011 Sum_probs=33.2
Q ss_pred hChHHhhhchhhHHhhhhccchhhHhhHHHHHHHHHhccCC
Q psy8581 190 EGMNAFFKSLVPLWGRQIPYTMMKFACFERTVELLYAHVVP 230 (414)
Q Consensus 190 ~G~~gly~G~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~ 230 (414)
.|+...+|-+...++..+|..++.+.+|++.++.......+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46677778888889999999999999999999887665433
Done!