RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8581
(414 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 89.2 bits (222), Expect = 6e-22
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 40 SPKYFLLCGLGGIVSCGSTHTLVTPLDLVKCRLQVNAD----KYKNLIHGFKVTVAEEGA 95
SP FL L G ++ T+ PLD+VK RLQ +A KYK ++ FK EEG
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 96 RGLARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDIL 131
RGL +G P + + FG YE K L L
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 60.3 bits (147), Expect = 1e-11
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 144 YLASSASAEFFADIALSPMEAVKVKIQTTAGFA----NTLREAVPKMYAQEGMNAFFKSL 199
L + A A P++ VK ++Q++A + + K+Y +EG+ +K L
Sbjct: 8 SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67
Query: 200 VPLWGRQIPYTMMKFACFERTVELL 224
+P R P + F +E +LL
Sbjct: 68 LPNLLRVAPAAAIYFGTYETLKKLL 92
Score = 56.9 bits (138), Expect = 2e-10
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 242 LIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGA------SVGDIVKKI----GFGGLW 291
+ + AG IAG A V++P D + ++L + D KKI G GL+
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 292 KGLGPRIIMIGTLTALQWFIYDFVKSI 318
KGL P ++ + A+ + Y+ +K +
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLKKL 91
Score = 49.2 bits (118), Expect = 9e-08
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 325 LIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGA------SVGDIVKKI----GFGGLW 374
+ + AG IAG A V++P D + ++L + D KKI G GL+
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 375 KGLGPRIIMIGTLTALQWFIF 395
KGL P ++ + A+ + +
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTY 85
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 45.3 bits (107), Expect = 2e-05
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 31/243 (12%)
Query: 51 GIVSCGSTHTLVTPLDLVKCRLQVNADKYKNLIHGFKVTVAEEGARGLARGWAPTAIGYS 110
G +S ++ P+D +K +Q + + + L G PT +G
Sbjct: 10 GALSGVIVDAVLYPIDSIKTNIQAKK------------SFSFSDIKKLYSGILPTLVGTV 57
Query: 111 AQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEFFADIALSPMEAVKVKIQ 170
+ YE K L L E + +T+LYL S++ AE A I P E VK +Q
Sbjct: 58 PASAFFYCFYELSKKL----LTEYRENISKTNLYLISTSIAEITACIVRLPFEIVKQNMQ 113
Query: 171 TTAGFANTLREAVPKMYAQEGMNAFF-KSLVPLWGRQIPYTMMKFACFERTVELLYAHVV 229
+ G + L+ + ++ +EG+ +F KS + R+IP+ +++ +E E
Sbjct: 114 VS-GNISVLK-TIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLKE------- 164
Query: 230 PKPRADCTKGEQL---IVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIG 286
K + D K + I + G +AG ++ P D + S+ G S + V +I
Sbjct: 165 -KAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR-QIIYGKSYIETVTEIA 222
Query: 287 FGG 289
G
Sbjct: 223 EEG 225
Score = 28.4 bits (63), Expect = 6.7
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 246 FAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIGFGGLWKGLGPRIIMIGTLT 305
G ++GV V +P D++ + + +K S DI K L+ G+ P ++GT+
Sbjct: 7 LVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSFSDIKK------LYSGILP--TLVGTVP 58
Query: 306 ALQWF--IYDFVKS-ITEKGEQLIVT---FAAGYIAGVFCAIVSHPADTLVSKLNQEKGA 359
A +F Y+ K +TE E + T + IA + IV P + + +
Sbjct: 59 ASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSGNI 118
Query: 360 SV 361
SV
Sbjct: 119 SV 120
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 40.9 bits (96), Expect = 8e-04
Identities = 57/306 (18%), Positives = 112/306 (36%), Gaps = 41/306 (13%)
Query: 44 FLLCGLGGIVSCGSTHTLVTPLDLVKCRLQV----------NADKYKNLIHGFKVTVAEE 93
F L G +S + T V P++ VK +Q +Y +++ F+ E+
Sbjct: 7 FATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQ 66
Query: 94 GARGLARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDILGEENTYLWR-TSLYLASSASAE 152
G L RG I Y F +YFK ++ + T W+ + + S A
Sbjct: 67 GVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKY--NQKTDFWKFFGVNILSGGLAG 124
Query: 153 FFADIALSPMEAVKVKIQTTAGFANT-----LREAVPKMYAQEGMNAFFKSLVPLWGRQI 207
+ + + P++ + ++ + G L + + K+ Q G + ++ I
Sbjct: 125 ASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGII 184
Query: 208 PYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLV 267
Y F ++ LL+ + K ++ +A + ++S+P DT+
Sbjct: 185 VYRGAYFGLYDSAKALLFGN---------DKNTNILYKWAVAQTVTILAGLISYPFDTVR 235
Query: 268 SKLNQEKGASVGD-------------IVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDF 314
++ G I+K G GG +KG ++ G AL YD
Sbjct: 236 RRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR-GAGGALVLVFYDE 294
Query: 315 VKSITE 320
++ + +
Sbjct: 295 LQKLLK 300
Score = 32.4 bits (74), Expect = 0.34
Identities = 52/256 (20%), Positives = 99/256 (38%), Gaps = 42/256 (16%)
Query: 158 ALSPMEAVKVKIQTTAGFANTLREAVPK----------MYAQEGMNAFFKSLVPLWGRQI 207
A++P+E VK+ IQT VP+ + ++G+ + ++ R
Sbjct: 24 AVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGVLSLWRGNTANVIRYF 83
Query: 208 PYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLV 267
P FA F+ + ++ PK + V +G +AG ++ +P D
Sbjct: 84 PTQAFNFA-FKDYFKNMF----PKYNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFAR 138
Query: 268 SKLNQE--KGAS---------VGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVK 316
++L + KG + I K+ GF L++G G + I + +YD K
Sbjct: 139 TRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAK 198
Query: 317 SI---TEKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGD---------- 363
++ +K ++ +A + ++S+P DT+ ++ G
Sbjct: 199 ALLFGNDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDC 258
Query: 364 ---IVKKIGFGGLWKG 376
I+K G GG +KG
Sbjct: 259 WKKILKNEGLGGFFKG 274
>gnl|CDD|215912 pfam00423, HN, Haemagglutinin-neuraminidase.
Length = 545
Score = 31.2 bits (71), Expect = 1.2
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 243 IVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIGFGGLWKGLGPRIIMIG 302
++ A I + A +S + S+ VK I L L P+ +IG
Sbjct: 11 LIILIAIIIIRIHSATISTGEIQNILNTLLSITESIDHQVKDI--SSLISELTPKFKIIG 68
Query: 303 T---------LTALQWFIYDFVKSITE 320
L+ L FI D +K +
Sbjct: 69 DEVGLTIPQKLSDLGSFISDKIKFLNP 95
Score = 30.4 bits (69), Expect = 2.1
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 326 IVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIGFGGLWKGLGPRIIMIG 385
++ A I + A +S + S+ VK I L L P+ +IG
Sbjct: 11 LIILIAIIIIRIHSATISTGEIQNILNTLLSITESIDHQVKDI--SSLISELTPKFKIIG 68
Query: 386 TLTALQ 391
L
Sbjct: 69 DEVGLT 74
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 30.0 bits (67), Expect = 2.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 252 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 285
AG FCAI D + +L +EK +G+IV KI
Sbjct: 261 AGTFCAI-----DNALEQLEKEKEVCLGEIVLKI 289
Score = 30.0 bits (67), Expect = 2.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 335 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 368
AG FCAI D + +L +EK +G+IV KI
Sbjct: 261 AGTFCAI-----DNALEQLEKEKEVCLGEIVLKI 289
>gnl|CDD|179115 PRK00767, PRK00767, transcriptional regulator BetI; Validated.
Length = 197
Score = 29.0 bits (66), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 71 RLQ-VNADK-YKNLIHGFKVTVAEEGARGLARGWA 103
RLQ +N+ + Y NL+ F+ + E AR A G A
Sbjct: 123 RLQRINSRRLYSNLLFEFRRLLPREQAREAAEGLA 157
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 252 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 285
G F AI D L+ +L K + +IVK++
Sbjct: 208 TGTFIAI-----DILLQQLEAGKEVDIFEIVKEL 236
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 335 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 368
G F AI D L+ +L K + +IVK++
Sbjct: 208 TGTFIAI-----DILLQQLEAGKEVDIFEIVKEL 236
>gnl|CDD|234427 TIGR03976, chp_LLNDYxLRE, His-Xaa-Ser system protein HsxD. This
rare conserved hypothetical protein of small size occurs
exclusively, and perhaps universally, in the context of
a pair of (uncharacterized) radical SAM proteins,
TIGR03977 and TIGR03978. Many members of this family
have invariant motifs LYW and LLNDYxLRE, but PSI-BLAST
starting from family members well below 20 % pairwise
sequence identity to this group eventually brings in the
entire family as modeled here. The family TIGR03979
represents the fourth regularly conserved member of this
system.
Length = 89
Score = 27.2 bits (61), Expect = 5.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 306 ALQWFIYDFVKSITEKGEQLIVTFAA 331
A WF F + E Q VTFAA
Sbjct: 14 AAYWFSDRFYIHLGEDDNQWFVTFAA 39
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 28.4 bits (64), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 252 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 285
G F AI D L+ +L E V IVK++
Sbjct: 182 TGTFIAI-----DILLQQLEAEGEVDVFQIVKEL 210
Score = 28.4 bits (64), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 335 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 368
G F AI D L+ +L E V IVK++
Sbjct: 182 TGTFIAI-----DILLQQLEAEGEVDVFQIVKEL 210
>gnl|CDD|107309 cd06314, PBP1_tmGBP, Periplasmic sugar-binding domain of Thermotoga
maritima glucose-binding protein (tmGBP) and its close
homologs. Periplasmic sugar-binding domain of
Thermotoga maritima glucose-binding protein (tmGBP) and
its close homologs from other bacteria. They are a
member of the type I periplasmic binding protein
superfamily which consists of two domains connected by a
three-stranded hinge. TmGBP is specific for glucose and
its binding pocket is buried at the interface of the two
domains. TmGBP also exhibits high thermostability and
the highest structural similarity to E. coli glucose
binding protein (ecGBP).
Length = 271
Score = 28.5 bits (64), Expect = 6.6
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 271 NQEKGASVGDIVKKIGFGGLWKGLGPRIIMIGTLTA--LQWFIYDFVKSITEKGEQLIVT 328
N G + G+I+KK GG G I +G+L A + I +I + +++ T
Sbjct: 102 NYAAGRTAGEIMKKALPGG-----GKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVDT 156
Query: 329 F-----AAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIGFGG 372
A + A+ +HP + L G ++ + VK G G
Sbjct: 157 RGDEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLG 205
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 28.3 bits (64), Expect = 8.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 248 AGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 285
A +IA + CA+ +HP L+S+ EK S+ DIV I
Sbjct: 253 ASHIA-LECALQTHPNICLISEEVAEKKMSLQDIVHYI 289
Score = 28.3 bits (64), Expect = 8.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 331 AGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 368
A +IA + CA+ +HP L+S+ EK S+ DIV I
Sbjct: 253 ASHIA-LECALQTHPNICLISEEVAEKKMSLQDIVHYI 289
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,867,488
Number of extensions: 2018845
Number of successful extensions: 1687
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1677
Number of HSP's successfully gapped: 33
Length of query: 414
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 315
Effective length of database: 6,546,556
Effective search space: 2062165140
Effective search space used: 2062165140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)