RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8581
(414 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 138 bits (350), Expect = 4e-38
Identities = 59/299 (19%), Positives = 108/299 (36%), Gaps = 42/299 (14%)
Query: 44 FLLCGLGGIVSCGSTHTLVTPLDLVKCRLQV-----------NADKYKNLIHGFKVTVAE 92
FL G ++ T PLD K RLQ+ + +Y+ ++ V
Sbjct: 5 FLGAGTAACIADLITF----PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 93 EGARGLARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAE 152
EG R L G + + GLY+ K Y+ G E+ + L + ++
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSR---LLAGSTTG 115
Query: 153 FFADIALSPMEAVKVKIQTTA------GFANTLREAVPKMYAQEGMNAFFKSLVPLWGRQ 206
A P + VKV+ Q A + +T+ EA + +EG+ +K P R
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTV-EAYKTIAREEGIRGLWKGTSPNVARN 174
Query: 207 IPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTL 266
+ ++ + L + + L F + + AG +++ P D +
Sbjct: 175 AIVNCAELVTYDLIKDTLLKANL--------MTDDLPCHFTSAFGAGFCTTVIASPVDVV 226
Query: 267 VSKL-NQEKGA--SVGDIVKKI----GFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSI 318
++ N G S G + G +KG P + +G+ + + Y+ +K
Sbjct: 227 KTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRA 285
Score = 123 bits (312), Expect = 1e-32
Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 42/284 (14%)
Query: 145 LASSASAEFFADIALSPMEAVKVKIQTTAGFANTLREAVP-----------KMYAQEGMN 193
+ +A AD+ P++ KV++Q +R A M EG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 194 AFFKSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAG 253
+ + LV RQ+ + ++ ++ + + AG G
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---------IGSRLLAGSTTG 115
Query: 254 VFCAIVSHPADTL-------VSKLNQEKGASVGD----IVKKIGFGGLWKGLGPRIIMIG 302
V+ P D + + S + I ++ G GLWKG P +
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 303 TLTALQWFIYDFVKSI----TEKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKL-NQEK 357
+ + YD +K + L F + + AG +++ P D + ++ N
Sbjct: 176 IVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235
Query: 358 GA--SVGDIVKKI----GFGGLWKGLGPRIIMIGTLTALQWFIF 395
G S G + G +KG P + +G+ + + +
Sbjct: 236 GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Score = 97.4 bits (243), Expect = 5e-23
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 20/190 (10%)
Query: 49 LGGIVSCGSTHTLVTPLDLVKCRLQVNAD-----KYKNLIHGFKVTVAEEGARGLARGWA 103
L G + + P D+VK R Q A +Y++ + +K EEG RGL +G +
Sbjct: 109 LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168
Query: 104 PT----AIGYSAQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEFFADIAL 159
P AI A+ Y+ K + + S+ A F +
Sbjct: 169 PNVARNAIVNCAE----LVTYDLIKDTLLKANLMTDD----LPCHFTSAFGAGFCTTVIA 220
Query: 160 SPMEAVKVKI--QTTAGFANTLREAVPKMYAQEGMNAFFKSLVPLWGRQIPYTMMKFACF 217
SP++ VK + + + M +EG AF+K +P + R + ++ F +
Sbjct: 221 SPVDVVKTRYMNSALGQYHSAG-HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 218 ERTVELLYAH 227
E+ L A
Sbjct: 280 EQLKRALMAA 289
Score = 77.7 bits (192), Expect = 3e-16
Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 31/181 (17%)
Query: 242 LIVTFAAGYIAGVFCAIVSHPADTL---------------VSKLNQEKG--ASVGDIVKK 284
+ V F A +++ P DT + Q +G ++ +V+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 285 IGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSITEKGEQ---LIVTFAAGYIAGVFCAI 341
G L+ GL + + +++ +YD VK KG + + AG G
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA 120
Query: 342 VSHPADTL-------VSKLNQEKGASVGD----IVKKIGFGGLWKGLGPRIIMIGTLTAL 390
V+ P D + + S + I ++ G GLWKG P + +
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 391 Q 391
+
Sbjct: 181 E 181
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 127 bits (322), Expect = 4e-34
Identities = 58/304 (19%), Positives = 102/304 (33%), Gaps = 43/304 (14%)
Query: 42 KYFLLCGLGGIVSCGSTHTLVTPLDLVKCRLQVN--------ADKYKNLIHGFKVTVAEE 93
K FL G+ +S T V P++ VK LQV +YK +I E+
Sbjct: 9 KDFLAGGVAAAIS----KTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 94 GARGLARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEF 153
G RG I Y F + +K ++ + + + LAS +A
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 154 FADIALSPMEAVKVKIQTTAGFA------NTLREAVPKMYAQEGMNAFFKSLVP-LWGRQ 206
+ + P++ + ++ G L + K++ +G+ ++ + G
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQG-I 183
Query: 207 IPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTL 266
I Y F ++ K K +IV++ +VS+P DT+
Sbjct: 184 IIYRAAYFGVYDTA----------KGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233
Query: 267 --------VSKLNQEKGASVGDIVKKI----GFGGLWKGLGPRIIMIGTLTALQWFIYDF 314
K D +KI G +KG ++ G A +YD
Sbjct: 234 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDE 292
Query: 315 VKSI 318
+K
Sbjct: 293 IKKF 296
Score = 90.4 bits (225), Expect = 1e-20
Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 38/273 (13%)
Query: 144 YLASSASAEFFADIALSPMEAVKVKIQT--------TAGFANTLREAVPKMYAQEGMNAF 195
+ A + A++P+E VK+ +Q + + V ++ ++G +F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 196 FKSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVF 255
++ + R P + FA ++ ++ V A+G AG
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHK----QFWRYFAGNLASGGAAGAT 125
Query: 256 CAIVSHPADTL--------VSKLNQEKGASVGDIVKKI----GFGGLWKGLGPRIIMIGT 303
+P D Q + +G+ + KI G GL++G + I
Sbjct: 126 SLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 185
Query: 304 LTALQWFIYDFVKSITEKGEQL--IVTFAAGYIAGVFCAIVSHPADTL--------VSKL 353
A + +YD K + + + IV++ +VS+P DT+ K
Sbjct: 186 YRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG 245
Query: 354 NQEKGASVGDIVKKI----GFGGLWKGLGPRII 382
D +KI G +KG ++
Sbjct: 246 ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 278
Score = 88.9 bits (221), Expect = 4e-20
Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 48 GLGGIVSCGSTHTLVTPLDLVKCRLQVNADK------YKNLIHGFKVTVAEEGARGLARG 101
G G S V PLD + RL + K + L + +G RGL +G
Sbjct: 120 GAAGATSL----CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQG 175
Query: 102 WAPTAIG---YSAQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEFFADIA 158
+ + G Y A FG+Y+ K + D +N ++ + + + A +
Sbjct: 176 FNVSVQGIIIYRA---AYFGVYDTAKGMLPD---PKNVHIIVS---WMIAQTVTAVAGLV 226
Query: 159 LSPMEAVKVKIQTTAGFA------NTLREAVPKMYAQEGMNAFFKSLVPLWGRQIPYTMM 212
P + V+ ++ +G + K+ EG AFFK R + +
Sbjct: 227 SYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV 286
Query: 213 KFACFERTVELL 224
++ + +
Sbjct: 287 -LVLYDEIKKFV 297
Score = 35.3 bits (82), Expect = 0.024
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 14/77 (18%)
Query: 329 FAAGYIAGVFCAIVSHPADTL----------VSKLNQEKGASVGDIVKKI----GFGGLW 374
F AG +A P + + +++ + D V +I GF W
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFW 70
Query: 375 KGLGPRIIMIGTLTALQ 391
+G +I AL
Sbjct: 71 RGNLANVIRYFPTQALN 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 79/482 (16%), Positives = 135/482 (28%), Gaps = 167/482 (34%)
Query: 8 VAKSNVFKNPFTQAKCATASTTIQPGDSCAF-----GSPKYFLLCGLGGIVSCGST---- 58
V + KN + A+ + +S F G+ + + G G G+T
Sbjct: 117 VKTKELIKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQ----GNTDDYF 170
Query: 59 ----------HTLVTPL-----DLVKCRLQVNADKYKNLIHGFKVTVAEEGARGLARGW- 102
H LV L + + ++ D K G + W
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-----------LEWL 219
Query: 103 -----APTAIGYSAQ--------GLCKFGLY------------EYFKVLYS------DIL 131
P Y G+ + Y E L ++
Sbjct: 220 ENPSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 132 GEENTYLWRTSLYLASSASAEFFADIALSPMEAVKVKIQTTAGFANTLR--EAVPKMYAQ 189
T++ +A + S E F + + F +R EA P
Sbjct: 279 ---------TAVAIAETDSWESFFVSVRKAITVL---------FFIGVRCYEAYPNTSLP 320
Query: 190 EGMNAFFKSLVPLWGRQIPYTM-----MKFACFERTVELLYAHVVPKPRADCTKGEQLIV 244
+ SL +P M + + V +H+ P G+Q+
Sbjct: 321 PSILE--DSLEN--NEGVPSPMLSISNLTQEQVQDYVNKTNSHL---PA-----GKQV-- 366
Query: 245 TFAAGYIA---GVFCAIVS-HPAD--TLVSKLNQEKGASVGDIVKKIGFGGLWKGLGPRI 298
I+ G +VS P L L + K A G +I F K +
Sbjct: 367 -----EISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLDQSRIPFSER-K---LKF 416
Query: 299 IM----IGT------LT-ALQWFIYDFVK-SITEKGEQLIV----TF-------AAGYIA 335
+ + L A D VK +++ + + + TF +G I+
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 336 GVFC-AIVSHPAD-TLVSKLNQEK-------GAS-VGDIVKKIGFGGLWKGLGPRIIMIG 385
I+ P ++ GAS +G + + G G R+I+ G
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN-----KDGTGVRVIVAG 531
Query: 386 TL 387
TL
Sbjct: 532 TL 533
Score = 45.0 bits (106), Expect = 4e-05
Identities = 54/316 (17%), Positives = 98/316 (31%), Gaps = 100/316 (31%)
Query: 1 MSPSLFEVAKSNVFKNPFTQAKCATAST---TIQPGDSCAFGSPK--YFLLCGLGG--IV 53
M L++ S ++ + +A T +I +P G G I
Sbjct: 1631 MGMDLYK--TSKAAQDVWNRADNHFKDTYGFSIL---DIVINNPVNLTIHFGGEKGKRIR 1685
Query: 54 SCGSTHTLVTPLDLVKCRLQVNADKYKNLIHGFKVTVAEEGARG-LARGWAPT-----AI 107
S T +D ++ + ++ + +G L+ T A+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHST-----SYTFRSEKGLLSA----TQFTQPAL 1736
Query: 108 ---GYSA-QGLCKFGLYEYFKVL--YSDILGEENTYLWRTSLY--LASSASAEFFADIAL 159
+A + L GL +S LGE Y LAS A
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHS--LGE----------YAALASLADVMSIES--- 1781
Query: 160 SPMEAVK-VKIQTTAGFANTLREAVPK---MYAQEGMNAFFKSLVPLWGRQIPYTMMKFA 215
V+ V + G T++ AVP+ + GM A + P GR + +
Sbjct: 1782 ----LVEVVFYR---G--MTMQVAVPRDELGRSNYGMIA----INP--GR------VAAS 1820
Query: 216 CFERTVELLYAHVVPKPRADC------TKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSK 269
+ ++ + V + + +Q + AG + + DT+ +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA---AGDLRAL---------DTVTNV 1868
Query: 270 LNQEKGASVGDIVKKI 285
LN K ++KI
Sbjct: 1869 LNFIK-------LQKI 1877
Score = 38.5 bits (89), Expect = 0.005
Identities = 36/232 (15%), Positives = 62/232 (26%), Gaps = 82/232 (35%)
Query: 134 ENTYLWRTSLYLASSASAEFFADIALSPMEAVKVKIQTTAGFANTLREAVPKMYAQEGMN 193
E+ L T+ + +S E F I P T GFA E
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEP----------TEGFAA----------DDE--- 53
Query: 194 AFFKSLVPLWGRQIPYTMMK----------------FACFERT------VELLYAHVVPK 231
+ L G+ + Y FE + L A ++ +
Sbjct: 54 --PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 232 PRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLV-SKLNQEKGASVGDIVKKIG--FG 288
K ++LI + A + P D S L + G+ ++ FG
Sbjct: 112 NDTTLVKTKELIKNY---ITA---RIMAKRPFDKKSNSALFR--AVGEGNA--QLVAIFG 161
Query: 289 GLWKGLGPRIIMIGTLTALQWF-----IYD----FVKSITEKGEQLIVTFAA 331
G +G +F +Y V + + + +
Sbjct: 162 G--QG-----------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 75/508 (14%), Positives = 133/508 (26%), Gaps = 183/508 (36%)
Query: 2 SPSLFEVAKSNVF-KNPFTQAKCATASTTIQPGDSCAFGSPKYFLLCGLGG--------- 51
+F AK NV P+ + + A ++P K L+ G+ G
Sbjct: 122 DNQVF--AKYNVSRLQPYLKLR--QALLELRPA--------KNVLIDGVLGSGKTWVALD 169
Query: 52 -------------------IVSCGSTHTLVTPL-DL---VKCRLQVNADKYKNLIHGFKV 88
+ +C S T++ L L + +D N+ ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RI 227
Query: 89 TVAEEGARGLARG-------------WAPTAIGYSAQGLCKFGLYEYF----KVL----- 126
+ R L + A F K+L
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-------------NAFNLSCKILLTTRF 274
Query: 127 --YSDILGEENTY---LWRTSLYLASSASAEFFA---DIALS--PMEAVKVKIQTTAGFA 176
+D L T L S+ L D P E + + + A
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 177 NTLREAVP-----KMYAQEGMN----------------AFFKSL--------VP------ 201
++R+ + K + + F L +P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 202 LWGRQIPYTMMKFAC------------FERTVEL--LYAHVVPKPRAD------------ 235
+W I +M E T+ + +Y + K +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 236 ---CTKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIV-------KKI 285
+ LI + Y + I H L + + E+ + +KI
Sbjct: 455 IPKTFDSDDLIPPYLDQYF---YSHIGHH----LKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 286 GFGGL-WKGLGPRIIMIGTLTALQWFIY-DFVKSITEKGEQL---IVTFAAGYIAGVFCA 340
W G ++ TL L+ Y ++ K E+L I+ F +
Sbjct: 508 RHDSTAWNASGS---ILNTLQQLK--FYKPYICDNDPKYERLVNAILDFLPKIEENL--- 559
Query: 341 IVSHPADTLVSKLNQEKGASVGDIVKKI 368
I S D L L E A + K++
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 34.8 bits (79), Expect = 0.061
Identities = 30/208 (14%), Positives = 55/208 (26%), Gaps = 49/208 (23%)
Query: 127 YSDILGEEN----TYLWRTSLYLASSASAEFFADIALSP-----MEAVKVKIQTTAGFAN 177
I+ ++ T +L + F + L M +K + + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 178 TLREAVPKMYAQEGMNAFFKSLVPLWGRQIPYTMMKFACFE-RTVELLYAHVVPKPRADC 236
E ++Y F K V R PY ++ A E R + +
Sbjct: 111 MYIEQRDRLY--NDNQVFAKYNVS---RLQPYLKLRQALLELRPAKNVLID--------- 156
Query: 237 TKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIGFGGLWKGLGP 296
G G +G + + + K+ F W L
Sbjct: 157 --G-------VLG--SG---------KTWVALDVCLSY-----KVQCKMDFKIFWLNLKN 191
Query: 297 RIIMIGTLTALQWFIYDFVKSITEKGEQ 324
L LQ +Y + T + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDH 219
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 29.0 bits (66), Expect = 2.7
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 88 VTVAEEGARGLARGWAPTAIGYSAQGLCKFGLYEY 122
+ V EE +A WA A+ S L L +
Sbjct: 81 LQVLEE----IAARWASVAVAVSVHSLSSHPLLVF 111
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 27.9 bits (61), Expect = 6.4
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 117 FGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAE-----FFADIALSPMEAVKVKIQT 171
F+ Y ++ +T TS +++ F D + + +
Sbjct: 138 MKHGIAFRTKYGELFDTNDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIISED 197
Query: 172 TAGFANTLR 180
AN+L
Sbjct: 198 ADMGANSLT 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,331,705
Number of extensions: 389923
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 21
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)