RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8581
(414 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 89.8 bits (221), Expect = 8e-21
Identities = 54/290 (18%), Positives = 94/290 (32%), Gaps = 25/290 (8%)
Query: 42 KYFLLCGLGGIVSCGSTHTLVTPLDLVKCRLQVN--------ADKYKNLIHGFKVTVAEE 93
K FL G+ +S T V P++ VK LQV +YK +I E+
Sbjct: 8 KDFLAGGVAAAIS----KTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 63
Query: 94 GARGLARGWAPTAIGYSAQGLCKFGLYEYFKVLYSDILGEENTYLWRTSLYLASSASAEF 153
G RG I Y F + +K ++ + + + LAS +A
Sbjct: 64 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 123
Query: 154 FADIALSPMEAVKVKIQTTAGFANTLRE------AVPKMYAQEGMNAFFKSLVPLWGRQI 207
+ + P++ + ++ G RE + K++ +G+ ++ I
Sbjct: 124 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGII 183
Query: 208 PYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLV 267
Y F ++ +L VT AG ++ F +
Sbjct: 184 IYRAAYFGVYDTAKGMLPDPKNVHIIVSWM--IAQTVTAVAGLVSYPFDTVRRRMMMQSG 241
Query: 268 SKLNQEKGASVGDIVKKI----GFGGLWKGLGPRIIMIGTLTALQWFIYD 313
K D +KI G +KG ++ G A +YD
Sbjct: 242 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYD 290
Score = 61.3 bits (147), Expect = 3e-11
Identities = 50/285 (17%), Positives = 99/285 (34%), Gaps = 39/285 (13%)
Query: 145 LASSASAEFFADIALSPMEAVKVKIQT--------TAGFANTLREAVPKMYAQEGMNAFF 196
+ A + A++P+E VK+ +Q + + V ++ ++G +F+
Sbjct: 10 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFW 69
Query: 197 KSLVPLWGRQIPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFC 256
+ + R P + FA ++ ++ V + A+G AG
Sbjct: 70 RGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR----YFAGNLASGGAAGATS 125
Query: 257 AIVSHPADTLVSKLNQEK------------GASVGDIVKKIGFGGLWKGLGPRIIMIGTL 304
+P D ++L + G + I K G GL++G + I
Sbjct: 126 LCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 185
Query: 305 TALQWFIYDFVKSITEKG--EQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVG 362
A + +YD K + +IV++ +VS+P DT+ ++ + G
Sbjct: 186 RAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGA 245
Query: 363 D------------IVKKIGFGGLWKGLGPRIIMIGTLTALQWFIF 395
D I K G +KG ++ G A ++
Sbjct: 246 DIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLY 289
Score = 32.8 bits (73), Expect = 0.061
Identities = 35/187 (18%), Positives = 57/187 (30%), Gaps = 34/187 (18%)
Query: 243 IVTFAAGYIAGVFCAIVSHPADTLVSKL-NQEKGASVG-------------DIVKKIGFG 288
+ F AG +A P + + L Q + I K+ GF
Sbjct: 7 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 66
Query: 289 GLWKGLGPRIIMIGTLTALQWFIYDFVKSI--------TEKGEQLIVTFAAGYIAGVFCA 340
W+G +I AL + D K I + A+G AG
Sbjct: 67 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSL 126
Query: 341 IVSHPADTLVSKLNQEK------------GASVGDIVKKIGFGGLWKGLGPRIIMIGTLT 388
+P D ++L + G + I K G GL++G + I
Sbjct: 127 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 186
Query: 389 ALQWFIF 395
A + ++
Sbjct: 187 AAYFGVY 193
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 288
Score = 29.0 bits (64), Expect = 0.97
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 207 IPYTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTL 266
+P+T + F + V+ C+ G G F I D +
Sbjct: 197 VPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAG---------VGRTGTFVVI-----DAM 242
Query: 267 VSKLNQEKGASVGDIVKKI 285
+ ++ E+ V V +I
Sbjct: 243 LDMMHSERKVDVYGFVSRI 261
Score = 29.0 bits (64), Expect = 1.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 335 AGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKI 368
G F I D ++ ++ E+ V V +I
Sbjct: 233 TGTFVVI-----DAMLDMMHSERKVDVYGFVSRI 261
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
shp-1 [TaxId: 9606]}
Length = 284
Score = 28.3 bits (62), Expect = 1.7
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 303 TLTALQWFIYDFVKSITEKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGA--- 359
+ + I +S+ G ++ + A G I D L+ ++ +
Sbjct: 186 GVLSFLDQINQRQESLPHAGPIIVHSSAGIGRTGTIIVI-----DMLMENISTKGLDCDI 240
Query: 360 SVGDIVKKI 368
+ ++ +
Sbjct: 241 DIQKTIQMV 249
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 27.8 bits (61), Expect = 2.9
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 8/135 (5%)
Query: 209 YTMMKFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLVS 268
+ LL A + I GV + T++
Sbjct: 242 GWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTML- 300
Query: 269 KLNQEKGASVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSITEKGEQLIVT 328
+ D+ G G+ IM G A F + +T G QL+V
Sbjct: 301 -KRLLRVDDPCDVFGVHGVCGIVGC-----IMTGIFAASSLGGVGFAEGVTM-GHQLLVQ 353
Query: 329 FAAGYIAGVFCAIVS 343
+ I V+ +V+
Sbjct: 354 LESIAITIVWSGVVA 368
>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 27.2 bits (60), Expect = 2.9
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 307 LQWFIYDFVKSITEKGEQLIVTFAAGYIAGVF--CAIVSHPA--DTLVSKLNQEKGASVG 362
Q + + VK + ++ + + A V C KL A++G
Sbjct: 137 KQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALG 196
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia
enterocolitica, YfuA [TaxId: 630]}
Length = 311
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 7/99 (7%)
Query: 240 EQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKKIGFGGLWKGLGPRII 299
+ + F G+ + + L ++L QE AS D+ + +
Sbjct: 18 KSWVDGFTKDT--GIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMV-----LVD 70
Query: 300 MIGTLTALQWFIYDFVKSITEKGEQLIVTFAAGYIAGVF 338
L V AA V+
Sbjct: 71 NAKLFAPLDAVTQAQVAQEYRPEHGRWTGIAARSTVFVY 109
>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 300
Score = 25.9 bits (56), Expect = 9.9
Identities = 33/246 (13%), Positives = 64/246 (26%), Gaps = 32/246 (13%)
Query: 170 QTTAGFANTLREAVPKMYA-----------------QEGMNAFFKSLVPLWGRQIPYTMM 212
A A L EA+P + +E F + +V + I ++
Sbjct: 5 DDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVV 64
Query: 213 KFACFERTVELLYAHVVPKPRADCTKGEQLIVTFAAGYIAGVFCAIVSHPADTLVSKLNQ 272
+ L + G ++ + V V+ +V+ +N+
Sbjct: 65 HGGGPQIGDLLKRLSIESH----FIDGMRVTDAATMDVVEMVLGGQVNK---DIVNLINR 117
Query: 273 EKGASVGDIVKKIGFGGLWKGLGPRIIMIGTLTALQWFIYDFVKSITEKGEQLIVTFAAG 332
G+++G K K +T + V +T L+ G
Sbjct: 118 HGGSAIGLTGKDAELIRAKK--LTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKG 175
Query: 333 YIAGVFCAIVSHPADTLVSKLNQEKGASVGDIVKK------IGFGGLWKGLGPRIIMIGT 386
V I + V + +K GL G + + T
Sbjct: 176 DFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLST 235
Query: 387 LTALQW 392
+
Sbjct: 236 EQVNEL 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,515,603
Number of extensions: 70146
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)