BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8582
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ9|A Chain A, Crystal Strucure Of Human Redd1, A Hypoxia-Induced
Regulator Of Mtor
pdb|3LQ9|B Chain B, Crystal Strucure Of Human Redd1, A Hypoxia-Induced
Regulator Of Mtor
Length = 134
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 30 LSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQ 89
L L++ L A+ +L PS L+ V +++LRLA EP GL+G L + E +
Sbjct: 9 LXQLLQESLAQARLGSRRPARLLXPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGK 68
Query: 90 ECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKK 149
C + + DP+ V TF+L L LR D R W + F + ++ +S GF + KK
Sbjct: 69 SCHSVGQLALDPSLVPTFQLTLVLRLDSRL-WPKIQGLFSSANSPSQSLTLSTGFRVIKK 127
Query: 150 RLYRT 154
+LY +
Sbjct: 128 KLYSS 132
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 24 DSASIFLSNRLEQELRAAKSAQLACGEVLL----PSDLLPNVARDILRLAEVEPYGLKGC 79
D + +L + L +ELR +S Q AC ++ ++ + V IL V G+K
Sbjct: 20 DYKAAYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIIL---SVSAKGVK-- 74
Query: 80 TLFI-----NFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTK 134
FI N + E R I+ DP +STF Y+T H + + F NL
Sbjct: 75 --FIDATNKNIIAEHEIRNISCAAQDPEDLSTFA-YITKDLKSNHHYCHVFTAFDVNLAA 131
Query: 135 GGTIMISRGF 144
+ + + F
Sbjct: 132 EIILTLGQAF 141
>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1196
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 22 IEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTL 81
I+ S + + RL EL + +QL ++L+ + P + +PY
Sbjct: 238 IKPSDDLVIPYRLRSELENIEYSQLNIVDLLVSGGIDP-------KFINTDPYWFTDNYF 290
Query: 82 FINFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMIS 141
+ ++ R I + N ++ L L+Q FR + + + L +K +IM+
Sbjct: 291 SNAKKVFEDHRNIYETEIEGNNAIGNDIKLRLKQKFRININDIWELNLNYFSKEFSIMMP 350
Query: 142 RGFTLEKKRLYR 153
F K YR
Sbjct: 351 DRFNNALKHFYR 362
>pdb|1JS9|A Chain A, Brome Mosaic Virus
pdb|1JS9|B Chain B, Brome Mosaic Virus
pdb|1JS9|C Chain C, Brome Mosaic Virus
Length = 189
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 NNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDI 65
+ +EA + I A+ +S L EL + K+ +L G VLL LLP+VA I
Sbjct: 52 SKWEA-SSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRI 104
>pdb|1YC6|A Chain A, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|B Chain B, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|C Chain C, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|D Chain D, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|E Chain E, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|F Chain F, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|G Chain G, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|H Chain H, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|I Chain I, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|J Chain J, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|K Chain K, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|L Chain L, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|M Chain M, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|N Chain N, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|O Chain O, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|P Chain P, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|Q Chain Q, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|R Chain R, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|S Chain S, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|T Chain T, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|U Chain U, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|V Chain V, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|W Chain W, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|X Chain X, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|Y Chain Y, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|Z Chain Z, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|1 Chain 1, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|2 Chain 2, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|3 Chain 3, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
pdb|1YC6|4 Chain 4, Crystallographic Structure Of The T1 Particle Of Brome
Mosaic Virus
Length = 154
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 NNYEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDI 65
+ +EA + I A+ +S L EL + K+ +L G VLL LLP+VA I
Sbjct: 17 SKWEA-SSDAITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVAGRI 69
>pdb|3H8Z|A Chain A, The Crystal Structure Of The Tudor Domains From Fxr2
Length = 128
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 14 YEAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEP 73
Y+ F ++ EDS +IF N + E Q+ G+V LP N ++I EVE
Sbjct: 18 YKGFVKDVHEDSVTIFFENNWQSE------RQIPFGDVRLPPPADYN--KEITEGDEVEV 69
Query: 74 Y 74
Y
Sbjct: 70 Y 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,549,037
Number of Sequences: 62578
Number of extensions: 161358
Number of successful extensions: 352
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 6
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)