Query psy8582
Match_columns 161
No_of_seqs 58 out of 60
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 22:30:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lq9_A DNA-damage-inducible tr 100.0 3.3E-66 1.1E-70 404.4 12.1 133 23-156 2-134 (134)
2 1e6y_C Methyl-coenzyme M reduc 52.7 3.8 0.00013 34.5 0.7 26 58-83 130-157 (247)
3 1hbn_C Methyl-coenzyme M reduc 52.5 3.9 0.00013 34.5 0.7 26 58-83 129-156 (248)
4 1e6v_C Methyl-coenzyme M reduc 51.7 4.1 0.00014 34.5 0.7 26 58-83 134-161 (258)
5 3sqg_C Methyl-coenzyme M reduc 43.5 6.5 0.00022 33.6 0.7 26 58-83 130-157 (279)
6 4dka_C RNA-editing complex pro 30.2 17 0.00057 27.2 1.0 78 74-154 6-89 (105)
7 1fiz_L Beta-acrosin light chai 30.1 13 0.00044 21.6 0.3 7 71-77 7-13 (26)
8 1fiw_L Beta-acrosin light chai 29.0 14 0.00047 21.5 0.3 7 71-77 6-12 (26)
9 2f5t_X Archaeal transcriptiona 27.4 99 0.0034 24.8 5.3 51 28-88 9-59 (233)
10 2kbv_A Sodium/hydrogen exchang 22.8 18 0.00061 21.0 0.0 8 74-81 10-17 (28)
11 4dix_A Plectin-related protein 21.2 85 0.0029 26.2 3.8 60 94-157 94-164 (230)
No 1
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR, hypoxia, cancer, signaling protein; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-66 Score=404.36 Aligned_cols=133 Identities=30% Similarity=0.524 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccccceeecCCCchHHHHHHHHHhhhcCCCcccceEEEEEeecccceeeeeeEeeCCC
Q psy8582 23 EDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPN 102 (161)
Q Consensus 23 e~~~~~~L~~~le~~Lr~AK~~~L~C~~lLlP~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~~~~~~~l~~i~~DP~ 102 (161)
||.+|++|+++||.||++||.++|+|++||||++|++|||+||||+|++||||+|||+|||++|+|++|+++++|+|||+
T Consensus 2 ee~~c~~l~~~le~~L~~AK~~~L~Cs~vLlP~~L~~rIa~dvLrls~~EPCGlRGc~i~v~vE~~~~c~~l~~I~~Dp~ 81 (134)
T 3lq9_A 2 DEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPS 81 (134)
T ss_dssp CHHHHHHHHHHHHHHHTTEESSSSCEECEECCHHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEETTEEEEEEEEESCTT
T ss_pred chHHHHHHHHHHHHHHHHHhhccccCceEEChHHHHHHHHHHHHHHhcCCCCccceeEEEEEEecCccccccCcEeeCCC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEecCCCCCccchhhhhhccCCCceEEeCCCcEEeeeccccccc
Q psy8582 103 TVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRLYRTYS 156 (161)
Q Consensus 103 ~VpTFELtLvlrqd~~~~W~~~~~~F~~~~~~~~tl~Lsp~frliKkKLYsS~~ 156 (161)
||||||||||||||+ ++||+++|+|+++.++++||+|||||||+|||||||++
T Consensus 82 ~vpTFEL~Lvlr~d~-~~W~~l~~~f~~~~~~~~tl~lSp~frl~KkKLYsS~~ 134 (134)
T 3lq9_A 82 LVPTFQLTLVLRLDS-RLWPKIQGLFSSANSPSQSLTLSTGFRVIKKKLYSSEQ 134 (134)
T ss_dssp SCCCEEEEEEEECCT-TCC-CCCCSCCTTSCCCCCEECCSCEEEEEEECC----
T ss_pred CCccEEEEEEEeeCC-CCCHhHHHHHhcCCCCCceEEECCCcEEEeeecccCCC
Confidence 999999999999999 59999999999888889999999999999999999974
No 2
>1e6y_C Methyl-coenzyme M reductase subunit gamma; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: d.58.31.1
Probab=52.74 E-value=3.8 Score=34.51 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 58 LPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 58 ~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
+..||++++...--. -||+|||++|=
T Consensus 130 lEk~sK~l~etE~fDpA~~g~RGaTVHG 157 (247)
T 1e6y_C 130 MEQCAKVQMETEITDHALAGVRGATVHG 157 (247)
T ss_dssp HHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred HHHHHHHHHhhhccCchhccccccceec
Confidence 567888777654443 49999999983
No 3
>1hbn_C Methyl-coenzyme M reductase I gamma subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: d.58.31.1 PDB: 1hbm_C* 1hbo_C* 1hbu_C* 3m1v_C* 3m2r_C* 3m2u_C* 3m2v_C* 3m30_C* 3m32_C* 3pot_C* 1mro_C*
Probab=52.52 E-value=3.9 Score=34.49 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 58 LPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 58 ~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
+..||++++...--. -||+|||++|=
T Consensus 129 lEk~sK~l~etE~fDpA~~g~RGaTVHG 156 (248)
T 1hbn_C 129 LEKISKELLETEFFDPARSGVRGKSVHG 156 (248)
T ss_dssp HHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred HHHHHHHHHhhhccCchhccccccceec
Confidence 567888777654443 49999999984
No 4
>1e6v_C Methyl-coenzyme M reductase I gamma subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI enzyme; HET: F43 TP7; 2.70A {Methanopyrus kandleri} SCOP: d.58.31.1
Probab=51.73 E-value=4.1 Score=34.54 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 58 LPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 58 ~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
+..||++++...--. -||+|||++|=
T Consensus 134 lEk~sK~l~etE~fDpA~~g~RGaTVHG 161 (258)
T 1e6v_C 134 LEKIAKELLETEIFDPARSGVRGATVHG 161 (258)
T ss_dssp HHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred HHHHHHHHHhhhccCchhccccccceec
Confidence 567888777654433 49999999984
No 5
>3sqg_C Methyl-coenzyme M reductase, gamma subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=43.46 E-value=6.5 Score=33.58 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 58 LPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 58 ~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
+..||++++...--- -||+|||++|=
T Consensus 130 lEk~sK~l~etE~fDpA~~g~RGaTVHG 157 (279)
T 3sqg_C 130 IEKIAKIEVDCELYDTARTGLRGRTVHG 157 (279)
T ss_dssp HHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred HHHHHHHHHhhhccCchhccccccceec
Confidence 567788777544333 49999999984
No 6
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=30.16 E-value=17 Score=27.20 Aligned_cols=78 Identities=17% Similarity=0.032 Sum_probs=42.0
Q ss_pred CcccceEEEEEe---ecccceeeeeeEeeCCCCCceeEEEEEEEecCCCCCccchhhhhh-cc--CCCceEEeCCCcEEe
Q psy8582 74 YGLKGCTLFINF---ETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLK-NL--TKGGTIMISRGFTLE 147 (161)
Q Consensus 74 CGlRGc~I~v~~---E~~~~~~~l~~i~~DP~~VpTFELtLvlrqd~~~~W~~~~~~F~~-~~--~~~~tl~Lsp~frli 147 (161)
|-|=|...+|.- ..+...+ =.+.+|....+-=|.+.+=.-.. ..|...+...++ +- .-.++|++.|.|.--
T Consensus 6 ~vlvG~V~DVQ~Gfl~~~~V~Q--ftl~~d~e~~~eke~~tVRC~Gd-~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~~ 82 (105)
T 4dka_C 6 ALMIGRIADVQHGFLGAMTVTQ--YVLEVDGGASGEKEFIVIRCMGD-NFPASLLKDQVKLGSRVLVQGTLRMNRHVDDV 82 (105)
T ss_dssp EEEEEEEEEEEEEEETTEEEEE--EEEEECC----CCEEEEEEEECC----------CCCTTCEEEEEEEEECCCEECTT
T ss_pred eEEEEEEEEeeecccccceEEE--EEEEEeCCCCCcccEEEEEEcCc-cchHHHHHHHHhCCCEEEEEeEEEeeeccccc
Confidence 556677777732 2222222 23456777777777777666766 678664444443 22 235899999999999
Q ss_pred eeccccc
Q psy8582 148 KKRLYRT 154 (161)
Q Consensus 148 KkKLYsS 154 (161)
+||+|.+
T Consensus 83 ~kkyy~y 89 (105)
T 4dka_C 83 SKRLHAY 89 (105)
T ss_dssp TCSEECC
T ss_pred cceeccC
Confidence 9999865
No 7
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=30.11 E-value=13 Score=21.63 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=5.1
Q ss_pred cCCCccc
Q psy8582 71 VEPYGLK 77 (161)
Q Consensus 71 ~EPCGlR 77 (161)
.=|||+|
T Consensus 7 dgpCGlr 13 (26)
T 1fiz_L 7 DGPCGLR 13 (26)
T ss_pred cccccce
Confidence 4588887
No 8
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=29.02 E-value=14 Score=21.49 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=5.1
Q ss_pred cCCCccc
Q psy8582 71 VEPYGLK 77 (161)
Q Consensus 71 ~EPCGlR 77 (161)
.-|||+|
T Consensus 6 dgpCGlr 12 (26)
T 1fiw_L 6 DGPCGVR 12 (26)
T ss_pred ccccCce
Confidence 4588887
No 9
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=27.43 E-value=99 Score=24.83 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhccccccceeecCCCchHHHHHHHHHhhhcCCCcccceEEEEEeecc
Q psy8582 28 IFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETD 88 (161)
Q Consensus 28 ~~L~~~le~~Lr~AK~~~L~C~~lLlP~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~~ 88 (161)
..+.+++++.++.||..-+ +.+|.+.++++..++.+... ||..|.|-+-+.
T Consensus 9 e~Ii~r~~e~I~~A~~el~----lsi~~e~l~~l~~~L~~A~~------rGV~V~liv~~~ 59 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVI----VVTPSEFFETIREDLIKTLE------RGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEE----EEECGGGHHHHHHHHHHHHH------TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhhEEE----EEeCHHHHHHHHHHHHHHHH------CCCEEEEEEcCC
Confidence 4677899999999998833 48999999999988887776 799999876653
No 10
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=22.82 E-value=18 Score=21.04 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=6.2
Q ss_pred CcccceEE
Q psy8582 74 YGLKGCTL 81 (161)
Q Consensus 74 CGlRGc~I 81 (161)
+|+|||..
T Consensus 10 ~GLRGAva 17 (28)
T 2kbv_A 10 GGLRGAIA 17 (28)
T ss_dssp TSSCHHHH
T ss_pred ecchHHHH
Confidence 68999853
No 11
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=21.23 E-value=85 Score=26.23 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred eeeEeeCCCCCce---------eEEEEEEEecCCCCCcc-chhhhhhccCCC-ceEEeCCCcEEeeecccccccc
Q psy8582 94 IATITCDPNTVST---------FELYLTLRQDFRHSWHS-LLPQFLKNLTKG-GTIMISRGFTLEKKRLYRTYSD 157 (161)
Q Consensus 94 l~~i~~DP~~VpT---------FELtLvlrqd~~~~W~~-~~~~F~~~~~~~-~tl~Lsp~frliKkKLYsS~~~ 157 (161)
.+-|.+||-+... -|..+++-|.++.-|++ ....|. .+ =.|||..|...+-|-.|||.-.
T Consensus 94 ~gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~----vgk~RiKL~kg~~t~akE~YSssmQ 164 (230)
T 4dix_A 94 VGKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFH----VGKMRIKLCKGKTVIAKEYYSSAMQ 164 (230)
T ss_dssp EEEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEE----EESSEEEEEETTEEEEEEECCTTCE
T ss_pred cCCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEE----eccEEEEEecCceEEeeeeecccce
Confidence 5788888887443 67788888888889985 222222 22 3499999998888889998643
Done!