Query psy8582
Match_columns 161
No_of_seqs 58 out of 60
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 22:30:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8582.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8582hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e6vc_ d.58.31.1 (C:) Methyl- 48.6 2.3 0.00017 33.9 0.7 27 57-83 127-155 (248)
2 d1hbnc_ d.58.31.1 (C:) Methyl- 48.4 2.3 0.00017 33.8 0.7 27 57-83 128-156 (247)
3 d1e6yc_ d.58.31.1 (C:) Methyl- 47.8 2.4 0.00017 33.8 0.7 26 58-83 130-157 (247)
4 d1zdna1 d.20.1.1 (A:6-156) Ubi 29.0 45 0.0032 23.0 5.1 57 53-114 3-62 (151)
5 d1skye2 b.49.1.1 (E:1-82) F1 A 19.8 55 0.004 21.3 3.8 26 75-100 8-33 (82)
6 d1y0jb1 g.37.1.2 (B:1-36) U-sh 19.4 14 0.001 21.2 0.5 6 72-77 12-17 (36)
7 d1j7db_ d.20.1.1 (B:) Ubiquiti 17.7 1.4E+02 0.01 20.0 6.4 63 55-126 1-66 (149)
8 d2f5tx2 d.136.1.5 (X:110-246) 16.8 1.1E+02 0.0081 21.7 5.1 47 31-87 12-58 (137)
9 d1o51a_ d.58.5.4 (A:) Hypothet 16.0 40 0.0029 22.2 2.4 27 61-89 21-47 (102)
10 d1ehia2 d.142.1.1 (A:135-362) 14.0 1.8E+02 0.013 19.5 5.7 44 42-85 126-172 (228)
No 1
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=48.57 E-value=2.3 Score=33.89 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=19.1
Q ss_pred chHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 57 LLPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 57 L~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
=+..||++++...--- -||+|||++|=
T Consensus 127 DlEk~sK~l~ete~fDpA~~GiRGaTVHG 155 (248)
T d1e6vc_ 127 DLEKIAKELLETEIFDPARSGVRGATVHG 155 (248)
T ss_dssp HHHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred hHHHHHHHHHhhhccCchhcccccceeec
Confidence 3567888876543333 49999999984
No 2
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=48.36 E-value=2.3 Score=33.84 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=19.1
Q ss_pred chHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 57 LLPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 57 L~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
=+..||++++...--- -||+|||++|=
T Consensus 128 DlEk~sK~l~ete~fDpA~~GiRGaTVHG 156 (247)
T d1hbnc_ 128 DLEKISKELLETEFFDPARSGVRGKSVHG 156 (247)
T ss_dssp HHHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred hHHHHHHHHHhhhccCchhcccccceeec
Confidence 3567888876543333 49999999984
No 3
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=47.79 E-value=2.4 Score=33.76 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhhhcC--CCcccceEEEE
Q psy8582 58 LPNVARDILRLAEVE--PYGLKGCTLFI 83 (161)
Q Consensus 58 ~~rIa~dvLrls~~E--PCGlRGc~I~v 83 (161)
+..||++++...--- -||+|||++|=
T Consensus 130 lEk~sK~l~ete~fDpA~~giRGaTVHG 157 (247)
T d1e6yc_ 130 MEQCAKVQMETEITDHALAGVRGATVHG 157 (247)
T ss_dssp HHHHHHHHHHBTTCCTTTEEECSSCCCC
T ss_pred HHHHHHHHHhhhccCchhcccccceeec
Confidence 567888777543333 49999999984
No 4
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}
Probab=28.95 E-value=45 Score=22.98 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=36.2
Q ss_pred cCCCchHHHHHHHHHhhhcCCCcccceEEEEEeecccceeeeeeEeeCCCC---CceeEEEEEEE
Q psy8582 53 LPSDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNT---VSTFELYLTLR 114 (161)
Q Consensus 53 lP~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~~~~~~~l~~i~~DP~~---VpTFELtLvlr 114 (161)
+|...+.||.+|+-.+..+-|.|+ ++....++-.+=-..|..-++| -=+|.+.+.|-
T Consensus 3 ~~~~~~kRl~kEl~~l~~~~~~gi-----~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp 62 (151)
T d1zdna1 3 LPPHIIRLVYKEVTTLTADPPDGI-----KVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLG 62 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTE-----EEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCe-----EEEEcCcchheeEEEEecCCCcCccCCceeeeeecC
Confidence 577889999999999998888763 3333333322223445544333 33588888875
No 5
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=19.82 E-value=55 Score=21.31 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=17.8
Q ss_pred cccceEEEEEeecccceeeeeeEeeC
Q psy8582 75 GLKGCTLFINFETDQECRKIATITCD 100 (161)
Q Consensus 75 GlRGc~I~v~~E~~~~~~~l~~i~~D 100 (161)
-++|..+||.|+.++--.-...+.++
T Consensus 8 qV~G~VVDV~F~~~~lP~I~~AL~v~ 33 (82)
T d1skye2 8 QVMGPVVDVKFENGHLPAIYNALKIQ 33 (82)
T ss_dssp EEETTEEEEEESTTCCCCTTEEEEEE
T ss_pred EEEcceEEEECCCCCCCCcceEEEEE
Confidence 47899999999877533334455554
No 6
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=19.38 E-value=14 Score=21.19 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=4.9
Q ss_pred CCCccc
Q psy8582 72 EPYGLK 77 (161)
Q Consensus 72 EPCGlR 77 (161)
-|||+|
T Consensus 12 ~pcgir 17 (36)
T d1y0jb1 12 LPCGIA 17 (36)
T ss_dssp TTTCCB
T ss_pred ccccee
Confidence 489987
No 7
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}
Probab=17.73 E-value=1.4e+02 Score=20.02 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHHhhhcCCCcccceEEEEEeecccceeeeeeEeeC---CCCCceeEEEEEEEecCCCCCccchh
Q psy8582 55 SDLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCD---PNTVSTFELYLTLRQDFRHSWHSLLP 126 (161)
Q Consensus 55 ~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~~~~~~~l~~i~~D---P~~VpTFELtLvlrqd~~~~W~~~~~ 126 (161)
++|.+||.+|+-.+..+-|= |+ .+....++..+=-+.|..- |.--=+|.+.++|- ..||.--|
T Consensus 1 ~~~~kRl~kEl~~l~~~~~~---gi--~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp----~~YP~~pP 66 (149)
T d1j7db_ 1 AGLPRRIIKETQRLLAEPVP---GI--KAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP----EEYPMAAP 66 (149)
T ss_dssp CCSCHHHHHHHHHHTTSCCT---TE--EEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECC----TTTTTSCC
T ss_pred CCccHHHHHHHHHHHhCCCC---CE--EEEECCCcccEeeeEEECCcccccCCCEEEEEEecC----CcccCCCc
Confidence 46889999999999887664 43 3445544444435555542 44445698888884 35664334
No 8
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}
Probab=16.84 E-value=1.1e+02 Score=21.66 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccccccceeecCCCchHHHHHHHHHhhhcCCCcccceEEEEEeec
Q psy8582 31 SNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLFINFET 87 (161)
Q Consensus 31 ~~~le~~Lr~AK~~~L~C~~lLlP~~L~~rIa~dvLrls~~EPCGlRGc~I~v~~E~ 87 (161)
-.|+...|..|+.-. -|+-|...-..|-.++...-. ||+++-++.+.
T Consensus 12 IEM~rEsLe~~e~Ev----IvvtP~eFF~~Ire~L~~~L~------rGvTlSlY~d~ 58 (137)
T d2f5tx2 12 IEMFRESLYSAKNEV----IVVTPSEFFETIREDLIKTLE------RGVTVSLYIDK 58 (137)
T ss_dssp HHHHHHHHHTCSSEE----EEEECGGGHHHHHHHHHHHHH------TTCEEEEEESS
T ss_pred HHHHHHHHHhccceE----EEEchHHHHHHHHHHHHHHHh------cCcEEEEEecC
Confidence 356777888887663 367899999999888877654 89999998874
No 9
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=16.05 E-value=40 Score=22.22 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.5
Q ss_pred HHHHHHHhhhcCCCcccceEEEEEeeccc
Q psy8582 61 VARDILRLAEVEPYGLKGCTLFINFETDQ 89 (161)
Q Consensus 61 Ia~dvLrls~~EPCGlRGc~I~v~~E~~~ 89 (161)
+...|++.+... |++||+++=-+++=.
T Consensus 21 l~~~iv~~ar~~--giaGaTv~rgi~GfG 47 (102)
T d1o51a_ 21 LFEYLVKRAYEL--GMKGVTVYRGIMGFG 47 (102)
T ss_dssp HHHHHHHHHHHT--TCSCCEEEECSCCCC
T ss_pred HHHHHHHHHHHC--CCCcEEEEeeeeeeC
Confidence 577888999876 999999999888643
No 10
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Probab=14.00 E-value=1.8e+02 Score=19.52 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=27.5
Q ss_pred hccccccceeecCCCchHHHHHHHHHhhhc--CCCcccceE-EEEEe
Q psy8582 42 KSAQLACGEVLLPSDLLPNVARDILRLAEV--EPYGLKGCT-LFINF 85 (161)
Q Consensus 42 K~~~L~C~~lLlP~~L~~rIa~dvLrls~~--EPCGlRGc~-I~v~~ 85 (161)
|...........|..+.+.+.+++-.++.. +-.|++|.. |++-+
T Consensus 126 k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lg~~~~~~iD~~~ 172 (228)
T d1ehia2 126 KFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLL 172 (228)
T ss_dssp HTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHhhhhcCCeeeEEEEE
Confidence 333334445677888888777777666643 556777765 55554
Done!