RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8582
(161 letters)
>3lq9_A DNA-damage-inducible transcript 4 protein; REDD1 DDIT4 MTOR,
hypoxia, cancer, signaling protein; 2.00A {Homo sapiens}
Length = 134
Score = 175 bits (446), Expect = 1e-57
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 23 EDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVARDILRLAEVEPYGLKGCTLF 82
++ L L++ L A+ +L+PS L+ V +++LRLA EP GL+G L
Sbjct: 2 DEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLD 61
Query: 83 INFETDQECRKIATITCDPNTVSTFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISR 142
+ E + C + + DP+ V TF+L L LR D R W + F + ++ +S
Sbjct: 62 VCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSR-LWPKIQGLFSSANSPSQSLTLST 120
Query: 143 GFTLEKKRLYRTY 155
GF + KK+LY +
Sbjct: 121 GFRVIKKKLYSSE 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 48/176 (27%)
Query: 4 LPNPVVFANNYEAFQQEDIEDSASI--------FLSNRLEQELRAAKSAQLACGEVLLPS 55
LP P E F +D E + ++S+ +E S +VL
Sbjct: 41 LPEP------TEGFAADD-EPTTPAELVGKFLGYVSSLVEP------SKVGQFDQVLN-- 85
Query: 56 DLLPNVARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVST-FELYLTLR 114
L L ++ L + + T+ + + +
Sbjct: 86 LCLTEFENCYLEGNDIH-------ALAAKLLQEND----TTLVKTKELIKNYITARIMAK 134
Query: 115 QDFRHSWHSLLPQFLKNLTKGGT-IM--------ISRGFTLEKKRLYRTYSDSIKE 161
+ F +S L + + +G ++ F E + LY+TY + +
Sbjct: 135 RPFDKKSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDLYQTYHVLVGD 186
Score = 35.0 bits (80), Expect = 0.007
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 45/164 (27%)
Query: 2 EVLPNPVV-FANNYEAFQQEDIEDSASIFLSN------RLEQELRAAKSAQLACGEVLL- 53
+VL + F N Y + DI A+ L + ++ ++ +A++
Sbjct: 82 QVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 54 --PSDLLPNVARDILRLAEV-------EPYGLKGCTLFINFETDQECRKIATITCDPNTV 104
S L V +L + + Y FE E R +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDY----------FE---ELRDL---------- 176
Query: 105 STFELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEK 148
++ Y L D L + ++ + ++G + +
Sbjct: 177 --YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILE 217
Score = 26.9 bits (59), Expect = 4.2
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 30/107 (28%)
Query: 7 PVVFANNYEAFQ---QEDIEDSASIF--LSNRL-EQELRAAKSAQLAC-GEVLLPSDLLP 59
P + AF+ + + + + F S L E +A LA +V+ L+
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHS--LGEY------AA-LASLADVMSIESLVE 1784
Query: 60 NV-ARDILRLAEVEPYGLKGCTLFINFETDQECRKIATITCDPNTVS 105
V R + + P G + + I +P V+
Sbjct: 1785 VVFYRGMT-MQVAVPRDELGRSNY------------GMIAINPGRVA 1818
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.056
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 27 SIFLSNRLEQELRAAKSAQL----ACGEVLLPSDLLPNVARD-----ILR-LAEVEPYGL 76
SI+L +++ E A + + DL+P I L +E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 77 KGC--TLFINFE-TDQECRKIATITCDP----NTVSTFELYLTLRQDFRHSWHSLLPQFL 129
+F++F +Q+ R +T NT+ + Y D + L+ L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 130 KNLTKGGTIMISRGFT 145
L K +I +T
Sbjct: 550 DFLPKIEENLICSKYT 565
Score = 31.4 bits (70), Expect = 0.11
Identities = 31/232 (13%), Positives = 62/232 (26%), Gaps = 96/232 (41%)
Query: 4 LP------NPVVFA-------------NNYEAFQQEDIEDSASIFLSNRLEQELRAAKSA 44
LP NP + +N++ + + L+ E R
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR----- 372
Query: 45 QL--ACG----EVLLPSDLL--------PNVARDIL------RLAEVEP----YGLKGCT 80
++ +P+ LL + ++ L E +P +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 81 LFINFETDQEC---RKIATITC-------DPNTVST-----------------------F 107
L + + + E R I + D + +
Sbjct: 433 LELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 108 ELYLTLRQDFRHSWHSLLPQFLKN-LTKGGTIMISRGF---TLEKKRLYRTY 155
L+ + DFR FL+ + T + G TL++ + Y+ Y
Sbjct: 491 TLFRMVFLDFR---------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Score = 25.6 bits (55), Expect = 9.3
Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 31/153 (20%)
Query: 2 EVLPNPVVFANNY-EAFQQEDIEDSASIFLSNRLEQELRAAKSAQLACG---EVLL--PS 55
++L VF + + + F +D++D LS + +K A LL
Sbjct: 20 DILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 56 DLLPNVARDILR-----LAE---VEPYGLKGCTLFINFETDQECRKIATITCDPNTVSTF 107
+++ ++LR L E T + D+ VS
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRL 134
Query: 108 ELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMI 140
+ YL LRQ L L ++I
Sbjct: 135 QPYLKLRQA------------LLELRPAKNVLI 155
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.30A {Streptococcus mutans}
Length = 192
Score = 30.0 bits (68), Expect = 0.23
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 1 MEVLPNPVVFANNYEAFQQEDIEDSASI--FLSNRLEQELRAAKSAQ 45
M ++ N EA+ ++ SA LS + + L A ++ +
Sbjct: 140 MHLVDQLTGVPINSEAWSTGILKVSAEKLAELSAQADALLSAIENLE 186
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 28.7 bits (63), Expect = 0.85
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 107 FELYLTLRQDFRHSWHSLLPQFLKNLTKGGTIMISRGFTLEKKRL 151
+E +L RQ + + +P L + T SR + L+K
Sbjct: 33 WETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTF 77
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A
{Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A*
2o3c_A
Length = 285
Score = 27.6 bits (62), Expect = 2.1
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 86 ETDQECRKIATITCDPNTVSTFELYL------TLRQDFRHSWHSLLPQFLKNLTKG 135
E DQE R I + ++ Y+ +R ++R W +FLK L
Sbjct: 117 EHDQEGR---VIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR 169
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 26.9 bits (60), Expect = 2.9
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 86 ETDQECRKIATITCDPNTVSTFELYL------TLRQDFRHSWHSLLPQFLKNLTKG 135
E DQE R I + ++ Y+ +R ++R W +FLK L
Sbjct: 150 EHDQEGR---VIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASR 202
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Length = 59
Score = 25.1 bits (55), Expect = 3.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 118 RHSWHSLLPQFLKNL 132
+HSW SL ++LK+L
Sbjct: 43 QHSWQSLKDRYLKHL 57
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis}
Length = 259
Score = 25.6 bits (57), Expect = 7.2
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 86 ETDQECRKIATITCDPNTVSTFELYL------TLRQDFRHSWHSLLPQFLKNLTKGG 136
E D+E R + CD +S LYL RQ ++ + L+ + G
Sbjct: 88 EFDREGR---FVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEG 141
>1kth_A Collagen alpha 3(VI) chain; anisotropic refinement, kunitz
inhibitor, extracellular matrix, connective tissue,
structural protein; 0.95A {Homo sapiens} SCOP: g.8.1.1
PDB: 1knt_A 1kun_A 2knt_A
Length = 58
Score = 24.1 bits (53), Expect = 7.6
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 13/32 (40%)
Query: 79 CTLFI---------NFETDQECRKIATITCDP 101
C F F + +EC K C P
Sbjct: 30 CARFWYGGCGGNENKFGSQKECEK----VCAP 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,428,985
Number of extensions: 132010
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 21
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)