RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8582
         (161 letters)



>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 30.4 bits (69), Expect = 0.013
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 87  TDQE----CRKIATITCDPNTVSTFELY--LTLRQDFRHSWHSLLPQFLKNL 132
           TD +       +      P++V+   L+  +      +HSW SL  ++LK+L
Sbjct: 6   TDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57


>d1yc611 b.121.4.5 (1:36-189) Cucumovirus coat protein {BMV (Brome
          mosaic virus) [TaxId: 12302]}
          Length = 154

 Score = 25.3 bits (55), Expect = 2.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 22 IEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVA 62
          I   A+  +S  L  EL + K+ +L  G VLL   LLP+VA
Sbjct: 26 ITAKATNAMSITLPHELSSEKNKELKVGRVLLWLGLLPSVA 66


>d1cwpa_ b.121.4.5 (A:) Cucumovirus coat protein {Cowpea chlorotic
          mottle virus [TaxId: 12303]}
          Length = 149

 Score = 24.9 bits (54), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 22 IEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLPNVA 62
           E   +  ++  L  EL + ++ QL  G VLL   LLP+V+
Sbjct: 21 AEAKVTSAITISLPNELSSERNKQLKVGRVLLWLGLLPSVS 61


>d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 94

 Score = 24.1 bits (52), Expect = 5.2
 Identities = 6/41 (14%), Positives = 11/41 (26%)

Query: 19 QEDIEDSASIFLSNRLEQELRAAKSAQLACGEVLLPSDLLP 59
          ++  E         R    +       + C     P +L P
Sbjct: 19 KDLQEPQEPRVGKLRNFAPIPGEPVVPILCSNPNFPEELKP 59


>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 23.7 bits (51), Expect = 8.3
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 63  RDILRLAEVEPYGLKGCTLFINFETDQECRKI 94
           R +L+   +E +      +  NF      +K+
Sbjct: 70  RYLLQNTALEIFMANRVAVMFNFPDPATVKKV 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 589,995
Number of extensions: 25225
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 6
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)