BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8588
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RID7|SNX17_DANRE Sorting nexin-17 OS=Danio rerio GN=snx17 PE=2 SV=1
Length = 473
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 132/185 (71%), Gaps = 1/185 (0%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
YWD YD ++M D VGL++LYAQ VSD+ R I+V+K+ L L+ G+KKE++ LA+
Sbjct: 204 YWDTAYDSDVMDDRVGLNLLYAQTVSDIDRGWILVNKEQHRQLKSLQEKGSKKEFIRLAQ 263
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
LKYYG+I+F+PC DFP+ V+V G E+NF ++ +++EG+FKVTRMRCW++T
Sbjct: 264 TLKYYGYIKFDPCITDFPEKGCHVIVGAGNNELNFHVKLPNEQMKEGSFKVTRMRCWRVT 323
Query: 192 INK-EEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
++ N +N ++ + +L+FEYL++K++LQW+TI S QAI+MS LQS++DEL
Sbjct: 324 SSQVPVANGTANPSSSSKCDVKLELAFEYLMSKDRLQWVTITSQQAIMMSICLQSMVDEL 383
Query: 251 VLKKT 255
++KK+
Sbjct: 384 MVKKS 388
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 15 QYVDLARKLKYYGFIEFEPCTCDFPK 40
+++ LA+ LKYYG+I+F+PC DFP+
Sbjct: 257 EFIRLAQTLKYYGYIKFDPCITDFPE 282
>sp|Q15036|SNX17_HUMAN Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1
Length = 470
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 129/184 (70%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
YWD YD ++M + VGL++LYAQ VSD+ R I+V K+ L L+ +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
L++YG++ F+ C DFP+ + VVV+ G E++ ++R ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
+ + ++++ + +L+FEYL++K++LQW+TI S QAI+MS LQS++DEL+
Sbjct: 325 SSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384
Query: 252 LKKT 255
+KK+
Sbjct: 385 VKKS 388
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 10 EVTPFQYVDLARKLKYYGFIEFEPCTCDFPK---PNISSYWDLEYDLEL 55
+V+ +++ LA+ L++YG++ F+ C DFP+ P + S + E L+L
Sbjct: 253 KVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQL 301
>sp|Q5R4A5|SNX17_PONAB Sorting nexin-17 OS=Pongo abelii GN=SNX17 PE=2 SV=1
Length = 470
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 129/184 (70%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
YWD YD ++M + VGL++LYAQ VSD+ R I+V K+ L L+ +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
L++YG++ F+ C DFP+ + VVV+ G E++ ++R ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
+ + ++++ + +L+FEYL++K++LQW+TI S QAI+MS LQS++DEL+
Sbjct: 325 SSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384
Query: 252 LKKT 255
+KK+
Sbjct: 385 VKKS 388
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 10 EVTPFQYVDLARKLKYYGFIEFEPCTCDFPK---PNISSYWDLEYDLEL 55
+V+ +++ LA+ L++YG++ F+ C DFP+ P + S + E L+L
Sbjct: 253 KVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQL 301
>sp|Q5EA77|SNX17_BOVIN Sorting nexin-17 OS=Bos taurus GN=SNX17 PE=2 SV=1
Length = 470
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 128/184 (69%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
YWD YD ++M + VGL++LYAQ V+D+ R I+V K+ L L+ +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVADIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
L++YG++ F+ C DFP+ + VVV+ G E++ ++R ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
+ + +++ + +L+FEYL++K++LQW+TI S QAI+MS LQS++DEL+
Sbjct: 325 SSVPLPSGGTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384
Query: 252 LKKT 255
+KK+
Sbjct: 385 VKKS 388
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 10 EVTPFQYVDLARKLKYYGFIEFEPCTCDFPK---PNISSYWDLEYDLEL 55
+V+ +++ LA+ L++YG++ F+ C DFP+ P + S + E L+L
Sbjct: 253 KVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQL 301
>sp|Q8BVL3|SNX17_MOUSE Sorting nexin-17 OS=Mus musculus GN=Snx17 PE=1 SV=2
Length = 470
Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 127/184 (69%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
YWD YD ++M + VGL++LYAQ VSD+ I+V K+ L L+ +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
L++YG++ F+ C DFP+ + VVV+ G E++ ++R ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
+ + +++ + +L+FEYL++K++LQW+TI S QAI+MS LQS++DEL+
Sbjct: 325 SSVPLPSGGTSSPSRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384
Query: 252 LKKT 255
+KK+
Sbjct: 385 VKKS 388
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 10 EVTPFQYVDLARKLKYYGFIEFEPCTCDFPK---PNISSYWDLEYDLEL 55
+V+ +++ LA+ L++YG++ F+ C DFP+ P + S + E L+L
Sbjct: 253 KVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQL 301
>sp|Q6AYS6|SNX17_RAT Sorting nexin-17 OS=Rattus norvegicus GN=Snx17 PE=1 SV=1
Length = 470
Score = 167 bits (422), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 126/184 (68%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
YWD YD ++M + VGL++LYAQ VSD+ I+V K+ L L+ +KKE++ LA+
Sbjct: 205 YWDSAYDDDVMENRVGLNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQ 264
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
L++YG++ F+ C DFP+ + VVV+ G E++ ++R ++REG+F+VTRMRCW++T
Sbjct: 265 TLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVT 324
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
+ + ++ + +L+FEYL++K++LQW+TI S QAI+MS LQS++DEL+
Sbjct: 325 SSVPLPSGGTSTPSRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELM 384
Query: 252 LKKT 255
+KK+
Sbjct: 385 VKKS 388
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 10 EVTPFQYVDLARKLKYYGFIEFEPCTCDFPK---PNISSYWDLEYDLEL 55
+V+ +++ LA+ L++YG++ F+ C DFP+ P + S + E L+L
Sbjct: 253 KVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQL 301
>sp|Q19532|YTDK_CAEEL PX domain-containing protein F17H10.3 OS=Caenorhabditis elegans
GN=F17H10.3 PE=2 SV=2
Length = 540
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 73 WDLEYDLELMTDPVGLDILYAQAVSDVHRESI-VVHKDTKTILNQLEASGAKKEYVDLAR 131
WD + L+ D +++LY QA+ D + V +D + L A K ++
Sbjct: 292 WDSRVEEPLLDDGNFVELLYKQAMQDYKNGHMDPVKEDLDSKLKSCMARNDSKMFLRTCH 351
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
+L Y + PC+CD+PKP T + G R+I R G+ + F+ TR+R W+I
Sbjct: 352 QLSTYSYEIMSPCSCDYPKPGTPCEIKFGRRQIIMTTRDETGKPKPSIFRATRIRVWRI- 410
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
T ++ FEYL+AK+ +WIT+ ++Q+ILMS LLQSI E++
Sbjct: 411 ---------------TQVMDKISFQFEYLMAKDTFEWITLDTDQSILMSLLLQSIGSEIL 455
>sp|Q8N9S9|SNX31_HUMAN Sorting nexin-31 OS=Homo sapiens GN=SNX31 PE=2 SV=3
Length = 440
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 110/203 (54%), Gaps = 13/203 (6%)
Query: 57 CYVALISFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQ 116
C V L + M+ L D LM V +D+LY QA+ D+ + + + L
Sbjct: 197 CKVGLRKWYMAPSL-------DSVLMDCRVAVDLLYMQAIQDIEKGWAKPTQAQRQKLEA 249
Query: 117 LEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIR 176
+ ++ ++++LAR++++YG+++ +PCTCD+P+ + V+++G EI+ I + + +
Sbjct: 250 FQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEISCCITLPDSQTQ 309
Query: 177 EGTFKVTRMRCWKIT-INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQ 235
+ F+++R++CW++T + D D N + +L F+Y + QW I + Q
Sbjct: 310 DIVFQMSRVKCWQVTFLGTLLDTDGPQRTLNQN----LELRFQY-SEDSCWQWFVIYTKQ 364
Query: 236 AILMSNLLQSIIDELVLKKTHED 258
A L+S+ L+ +I E ++K E+
Sbjct: 365 AFLLSSCLKKMISEKMVKLAAEN 387
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 7 FYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVAL----- 61
F E + ++++LAR++++YG+++ +PCTCD+P+ + + + E+ C + L
Sbjct: 250 FQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNN-EISCCITLPDSQT 308
Query: 62 --ISFNMS 67
I F MS
Sbjct: 309 QDIVFQMS 316
>sp|Q6P8Y7|SNX31_MOUSE Sorting nexin-31 OS=Mus musculus GN=Snx31 PE=2 SV=1
Length = 439
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 102/187 (54%), Gaps = 6/187 (3%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
Y D D LM D+LY QAV D+ +E + + + L L+ + ++++L++
Sbjct: 205 YLDPALDSMLMDCRAAGDLLYMQAVQDIEKEWMKPTQAQREELKALQKKENQTKFLELSQ 264
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
++++YG+++ +PCTC+ P+P ++IG EI+ I G+I++ F+++R++CW++T
Sbjct: 265 EVRHYGYVQLDPCTCNHPEPGCGAQLSIGNNEISCCITLPNGQIQDIAFQMSRVKCWQVT 324
Query: 192 -INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
+ D D N + +L F+Y + QW I + QA +S+ L+ +I E
Sbjct: 325 FLGTLLDTDGPQRTLNQN----LELRFQY-SEDSCQQWFVIYTKQAFFLSSCLKKMISER 379
Query: 251 VLKKTHE 257
+ K T +
Sbjct: 380 MTKLTEQ 386
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 38/60 (63%), Gaps = 8/60 (13%)
Query: 15 QYVDLARKLKYYGFIEFEPCTCDFPKPNISSYWDLEYDLELMCYVAL-------ISFNMS 67
++++L++++++YG+++ +PCTC+ P+P + + + E+ C + L I+F MS
Sbjct: 258 KFLELSQEVRHYGYVQLDPCTCNHPEPGCGAQLSIGNN-EISCCITLPNGQIQDIAFQMS 316
>sp|Q28HD5|SNX31_XENTR Sorting nexin-31 OS=Xenopus tropicalis GN=snx31 PE=2 SV=1
Length = 428
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
Y + D LM +D+LY QAV + E KD + L K ++++L +
Sbjct: 203 YMNPSNDAMLMGSTEAIDLLYLQAVQEFQMEWTRPTKDQQQKLQHCLKQQNKLKFLELMK 262
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
++YYG++ CT D+P+ +++V + +G E++ S G + + CW +T
Sbjct: 263 TVEYYGYLHITSCTSDYPECDSEVTIWVGNNEMSCHFYSPGGHAENLRLSIKDLICWNVT 322
Query: 192 -INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDEL 250
+ K+++ + N +H +L F+Y + L+ ITI + QA L+S+ L+ ++ E
Sbjct: 323 LLPKKQEVMSPNHQH-------LELKFDYQQG-SSLKCITIHTEQAFLLSSCLKKMLSER 374
Query: 251 VLKKTHED 258
+ + E+
Sbjct: 375 PVHRCKEE 382
>sp|Q6DDY6|SNX31_XENLA Sorting nexin-31 OS=Xenopus laevis GN=snx31 PE=2 SV=1
Length = 431
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Query: 72 YWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLAR 131
Y + D+ LM +DILY QAV + + KD + L K ++++L +
Sbjct: 203 YMNPSNDVMLMGSTEAIDILYLQAVQEFQMDWTRPTKDQEQKLQHCLKEENKLKFLELMK 262
Query: 132 KLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191
++YYG+++ C D+P+ +++V V +G E++ S G + + CW ++
Sbjct: 263 TVEYYGYLQIASCASDYPECDSEVNVWVGNNEMSCHFHSPGGHTEHLRLNIRDLICWNVS 322
Query: 192 INKEEDNDASNARHNTSQANQTQLSFEYLLAKNKLQWITIQSNQAILMSNLLQSIIDELV 251
+ + + + + H + FEY + L+ ITI++ QA L+S+ L+ ++ E
Sbjct: 323 LLQPKKQEVMSPNH-----QHLEFKFEYQQG-SSLKCITIRTEQAFLLSSCLKKMLSEYP 376
Query: 252 LKKTHED 258
+ ++ E+
Sbjct: 377 VHRSKEE 383
>sp|O85692|ETFA_MEGEL Electron transfer flavoprotein subunit alpha OS=Megasphaera
elsdenii GN=etfA PE=3 SV=1
Length = 338
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 103 SIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDF---PKPNTKVV--V 157
+I++ KD K + +L A GA K YV +L++Y + CDF KPN +V
Sbjct: 44 AILIGKDVKPLAQELIAHGAHKVYVYDDPQLEHYNTTAYAKVICDFFHEEKPNVFLVGAT 103
Query: 158 NIGLREINFRIRSS 171
NIG R++ R+ +S
Sbjct: 104 NIG-RDLGPRVANS 116
>sp|A7YVD7|NDUF6_BOVIN NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Bos
taurus GN=NDUFAF6 PE=2 SV=1
Length = 333
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 117 LEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIR 176
L ASG + ++L RK Y G++ C P LR N + + +
Sbjct: 52 LGASGTDRYCLELLRKRDYEGYL------CSLLLPAESRSSAFALRAFNVELAQIKDSVS 105
Query: 177 EGTFKVTRMRCWKITIN 193
E T + RM+ WK T++
Sbjct: 106 EKTIGLMRMQFWKKTVD 122
>sp|Q493Q0|MURC_BLOPB UDP-N-acetylmuramate--L-alanine ligase OS=Blochmannia
pennsylvanicus (strain BPEN) GN=murC PE=3 SV=1
Length = 480
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 123 KKEYVDLARKLKYYGFIEF---EPCTCD-FPKPNTKVVVNIGLREINFRIRSSEGEIREG 178
KK ++D L +YG+ +P C+ PK K++ + N I + I +
Sbjct: 211 KKAFIDFLHNLPFYGYAIVCIDDPVICEILPKIKRKIITYGFNKNANLHIFNYRQHIEKS 270
Query: 179 TFKVTRMRCWK--ITINKEEDNDASNARHNTSQANQTQLSFEYLL 221
+F V+R K +T+N ++A NA + A + +S + +L
Sbjct: 271 SFTVSRFNQTKLQVTLNAPGCHNALNATAAIAVATEEGISDKIIL 315
>sp|A6UB63|PANC_SINMW Pantothenate synthetase OS=Sinorhizobium medicae (strain WSM419)
GN=panC PE=3 SV=1
Length = 291
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 74 DLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLA 130
DL D EL+TD G+DIL+A VSD++ + D + ++LE + + +A
Sbjct: 74 DLARDQELLTDG-GVDILFAPGVSDMYPRPMETVVDVPKLGSELEGAVRPGHFAGVA 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,438,485
Number of Sequences: 539616
Number of extensions: 3862014
Number of successful extensions: 8602
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8563
Number of HSP's gapped (non-prelim): 37
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)