Query psy8588
Match_columns 265
No_of_seqs 136 out of 155
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:37:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3784|consensus 100.0 2.6E-65 5.7E-70 480.8 12.1 213 12-253 136-362 (407)
2 KOG3784|consensus 99.3 1.3E-12 2.7E-17 124.6 3.2 104 6-119 240-353 (407)
3 cd01777 SNX27_RA Ubiquitin dom 98.9 7.5E-10 1.6E-14 85.9 1.6 48 13-71 31-87 (87)
4 smart00295 B41 Band 4.1 homolo 98.4 3.2E-07 6.9E-12 78.7 5.0 96 13-120 33-131 (207)
5 PF00373 FERM_M: FERM central 93.7 0.029 6.3E-07 44.4 1.1 38 82-119 5-42 (126)
6 PF00373 FERM_M: FERM central 86.1 0.34 7.4E-06 38.1 1.0 32 110-141 95-126 (126)
7 KOG4261|consensus 84.5 0.45 9.7E-06 50.1 1.2 75 67-142 191-312 (1003)
8 KOG3530|consensus 83.3 2.9 6.4E-05 42.9 6.4 112 63-187 81-241 (616)
9 KOG0792|consensus 74.0 5.6 0.00012 43.4 5.4 114 64-187 96-262 (1144)
10 KOG3552|consensus 60.4 10 0.00022 41.2 4.0 48 71-118 263-317 (1298)
11 PF02174 IRS: PTB domain (IRS- 58.6 86 0.0019 24.5 11.3 77 152-250 21-98 (100)
12 PTZ00043 cytochrome c oxidase 53.5 16 0.00034 33.7 3.5 45 67-111 77-121 (268)
13 KOG1108|consensus 45.9 17 0.00037 33.6 2.5 19 140-158 195-213 (281)
14 cd00836 FERM_C FERM_C domain. 43.7 1.4E+02 0.003 22.5 10.9 49 135-191 1-49 (92)
15 KOG3529|consensus 42.8 11 0.00024 39.0 0.9 99 83-187 103-256 (596)
16 PF09380 FERM_C: FERM C-termin 40.1 48 0.001 24.9 3.9 37 150-188 2-38 (90)
17 PF13991 BssS: BssS protein fa 39.4 65 0.0014 24.5 4.4 50 187-250 5-61 (73)
18 cd01203 DOK_PTB Downstream of 34.8 2.5E+02 0.0053 22.8 8.9 81 146-251 17-98 (104)
19 cd01272 FE65_N Fe65 Phosphotyr 29.0 2.1E+02 0.0046 24.3 6.2 76 100-191 8-89 (138)
20 PF00712 DNA_pol3_beta: DNA po 26.9 78 0.0017 25.1 3.3 51 99-171 63-113 (120)
No 1
>KOG3784|consensus
Probab=100.00 E-value=2.6e-65 Score=480.78 Aligned_cols=213 Identities=35% Similarity=0.619 Sum_probs=195.8
Q ss_pred Ccceeeecccccceee-EEEeecCC----------CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeeccccccc
Q psy8588 12 TPFQYVDLARKLKYYG-FIEFEPCT----------CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLE 80 (265)
Q Consensus 12 ~~~~~l~L~~el~~Yf-lf~~~~~~----------~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~ 80 (265)
.++.+|||++++.+|| ||++.... +|||.||.+..+. .+..+.+++||||||+..|..
T Consensus 136 ~v~~kl~l~~e~i~~f~lFlvr~~~~~~ls~vRkl~~fE~p~vs~t~~-----------~~~~~~l~LRk~~~ds~~e~~ 204 (407)
T KOG3784|consen 136 SVCRKLGLPDELIGYFGLFLVRDNDPGNLSFVRKLADFESPYVSLTSN-----------YVSACELLLRKWYWDSSRERA 204 (407)
T ss_pred HHHhhcCCchHhhhheeeeEEeccCCCcceeeeeeccccccccccccc-----------ccccccceeeeeeecchhhhH
Confidence 3567899999999999 99999662 9999998776643 123466999999999999999
Q ss_pred ccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhcCCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEe
Q psy8588 81 LMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIG 160 (265)
Q Consensus 81 L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG 160 (265)
|++++++++|+|.|||+|+++||+.++.++..||++||+++++++||+|||+|+||||++||||+||||+||+.|++++|
T Consensus 205 L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g 284 (407)
T KOG3784|consen 205 LMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVG 284 (407)
T ss_pred HhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEc
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEcc--CC-eeeEEEEecchHH
Q psy8588 161 LREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLLA--KN-KLQWITIQSNQAI 237 (265)
Q Consensus 161 ~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~--~~-~~~WIti~T~qa~ 237 (265)
++++.+++..|++++++++|+|||||||||| +.+++|+|||++. ++ +||||||+||||+
T Consensus 285 ~~~ll~~~teegq~~q~i~F~~trmr~Wrvt------------------e~~la~~FEy~~~~~~d~k~rWv~I~T~qa~ 346 (407)
T KOG3784|consen 285 NHELLLACTEEGQQNQEIAFRWTRMRCWRVT------------------EEGLAFSFEYLRDEVKDKKLRWVTIFTPQAI 346 (407)
T ss_pred chhheeeeccCCCccceeEEEeeeeEeeecc------------------HHHHHHHHHHHHhhccccceeEEEEcCcHHH
Confidence 9999998777776789999999999999999 4569999999994 55 9999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy8588 238 LMSNLLQSIIDELVLK 253 (265)
Q Consensus 238 lms~Clq~mv~E~l~~ 253 (265)
|||+|||+|++|++.+
T Consensus 347 lMs~Clq~m~~El~~~ 362 (407)
T KOG3784|consen 347 LMSECLQSMVSELLVK 362 (407)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999954
No 2
>KOG3784|consensus
Probab=99.29 E-value=1.3e-12 Score=124.61 Aligned_cols=104 Identities=18% Similarity=0.375 Sum_probs=90.6
Q ss_pred eeccCCCcceeeecccccceeeEEEeecCCCCCCCCCeeee-eccccccccceeeeecCcee------eeeeeeeccccc
Q psy8588 6 RFYPEVTPFQYVDLARKLKYYGFIEFEPCTCDFPKPNISSY-WDLEYDLELMCYVALISFNM------SSPLHYWDLEYD 78 (265)
Q Consensus 6 ~~~~~~~~~~~l~L~~el~~Yflf~~~~~~~dfe~Pyis~~-s~~~~n~el~~~~a~~~~~i------v~Rk~~wd~t~~ 78 (265)
.+|++++..++|+|+|++.+|++.+|.+|.||||.|...+. ++ ||+||.++.+.++.+. ++|+++||++
T Consensus 240 slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~--g~~~ll~~~teegq~~q~i~F~~trmr~Wrvt-- 315 (407)
T KOG3784|consen 240 SLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISV--GNHELLLACTEEGQQNQEIAFRWTRMRCWRVT-- 315 (407)
T ss_pred HHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEE--cchhheeeeccCCCccceeEEEeeeeEeeecc--
Confidence 47899999999999999999999999999999999999988 88 9999999999887422 9999999998
Q ss_pred ccccCCcccchhhhhhhh---hhccCCeEEeChhHHHHHHHHHh
Q psy8588 79 LELMTDPVGLDILYAQAV---SDVHRESIVVHKDTKTILNQLEA 119 (265)
Q Consensus 79 ~~L~~d~~al~LlY~QAv---~Dv~~gwI~~~~eq~~qL~~lq~ 119 (265)
+.++.|.|.++. .|-+..||++.++|+..|+.+-+
T Consensus 316 ------e~~la~~FEy~~~~~~d~k~rWv~I~T~qa~lMs~Clq 353 (407)
T KOG3784|consen 316 ------EEGLAFSFEYLRDEVKDKKLRWVTIFTPQAILMSECLQ 353 (407)
T ss_pred ------HHHHHHHHHHHHhhccccceeEEEEcCcHHHHHHHHHH
Confidence 556666666667 45589999999999999997654
No 3
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=98.86 E-value=7.5e-10 Score=85.93 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=43.8
Q ss_pred cceeeecccccceee-EEEeecCC-----CCCCCC---CeeeeeccccccccceeeeecCceeeeeee
Q psy8588 13 PFQYVDLARKLKYYG-FIEFEPCT-----CDFPKP---NISSYWDLEYDLELMCYVALISFNMSSPLH 71 (265)
Q Consensus 13 ~~~~l~L~~el~~Yf-lf~~~~~~-----~dfe~P---yis~~s~~~~n~el~~~~a~~~~~iv~Rk~ 71 (265)
.+++|||++++.+|| ||++.+.+ +|||.| |+++|++ |++++|+.+|||
T Consensus 31 v~~kl~L~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~ly~~ny~s-----------a~~~~cl~~rkw 87 (87)
T cd01777 31 LVAKAGMDSYTQNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTS-----------AVPGTCLTARKW 87 (87)
T ss_pred HHHHhCCCHHHHhheeeeEEecceEEEeccCccCCceEEEEEeec-----------cCCcceEEEecC
Confidence 467899999999999 99999887 999999 8999977 568999999998
No 4
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=98.41 E-value=3.2e-07 Score=78.70 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=66.5
Q ss_pred cceeeecccccceee-EEEeecCC--CCCCCCCeeeeeccccccccceeeeecCceeeeeeeeecccccccccCCcccch
Q psy8588 13 PFQYVDLARKLKYYG-FIEFEPCT--CDFPKPNISSYWDLEYDLELMCYVALISFNMSSPLHYWDLEYDLELMTDPVGLD 89 (265)
Q Consensus 13 ~~~~l~L~~el~~Yf-lf~~~~~~--~dfe~Pyis~~s~~~~n~el~~~~a~~~~~iv~Rk~~wd~t~~~~L~~d~~al~ 89 (265)
.++++||. + ..|| ||...... ..+..|.-.+... .. .....++..|+++|-+.. ..+..|+.+++
T Consensus 33 v~~~~~l~-~-~~~F~L~~~~~~~~~~~~l~~~~~l~~~--~~-------~~~~~~l~fr~r~~~~~~-~~~~~d~~~~~ 100 (207)
T smart00295 33 VCRKLGIR-E-SEYFGLQFEDPDEDLSHWLDPAKTLLDQ--DV-------KSEPLTLYFRVKFYPPDP-LQLKEDPTRLN 100 (207)
T ss_pred HHHHhCCC-c-cceeEEEEEcCCCCcCeeCCCccCHHHh--cC-------CCCCcEEEEEEEEccCCH-HHhcchhHHHH
Confidence 35667883 4 4555 99988654 1233332222211 00 002468899999997763 34667999999
Q ss_pred hhhhhhhhhccCCeEEeChhHHHHHHHHHhc
Q psy8588 90 ILYAQAVSDVHRESIVVHKDTKTILNQLEAS 120 (265)
Q Consensus 90 LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~ 120 (265)
++|.|+..|+..|++.++.+++.+|.+|+-+
T Consensus 101 ~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q 131 (207)
T smart00295 101 LLYLQVRNDILEGRLPCPEEEALLLAALALQ 131 (207)
T ss_pred HHHHHHHHHHHcCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987544
No 5
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=93.68 E-value=0.029 Score=44.35 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=34.9
Q ss_pred cCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHh
Q psy8588 82 MTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEA 119 (265)
Q Consensus 82 ~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~ 119 (265)
.+|+.++.++|.|+..|+-.|-+.++.+.+.+|.+|+-
T Consensus 5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~ 42 (126)
T PF00373_consen 5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQL 42 (126)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999874
No 6
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=86.09 E-value=0.34 Score=38.13 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCcCeEEc
Q psy8588 110 TKTILNQLEASGAKKEYVDLARKLKYYGFIEF 141 (265)
Q Consensus 110 q~~qL~~lq~~~~k~eyL~lar~l~~YG~v~f 141 (265)
...++..+....-+..||++|+++|+||.-.|
T Consensus 95 ~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 95 QHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp HHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred HHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 34445555555677889999999999998776
No 7
>KOG4261|consensus
Probab=84.47 E-value=0.45 Score=50.09 Aligned_cols=75 Identities=31% Similarity=0.399 Sum_probs=54.8
Q ss_pred eeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc--------------------------
Q psy8588 67 SSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS-------------------------- 120 (265)
Q Consensus 67 v~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~-------------------------- 120 (265)
.+|.++|-..-.. --.|++-++|+|.|+++++-.|--.+..+++.++-.+|..
T Consensus 191 llRrk~f~sd~nv-dsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~~~~~k~k~~ld~kd~lpk~y~ 269 (1003)
T KOG4261|consen 191 LLRRKFFFSDQNV-DSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGPHNEDKHKGFLDLKDFLPKEYV 269 (1003)
T ss_pred HHHHHHhhccccc-cccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCCchhhccccchhccccChHHHh
Confidence 5555555332222 2458999999999999999999998888888777655432
Q ss_pred ---------------------CCHHHHHHHHHhCCCcCeEEcC
Q psy8588 121 ---------------------GAKKEYVDLARKLKYYGFIEFE 142 (265)
Q Consensus 121 ---------------------~~k~eyL~lar~l~~YG~v~f~ 142 (265)
..|..|.++||.|+.||--.|-
T Consensus 270 k~k~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~ 312 (1003)
T KOG4261|consen 270 KQKGEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFL 312 (1003)
T ss_pred ccccchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEE
Confidence 2344589999999999976663
No 8
>KOG3530|consensus
Probab=83.34 E-value=2.9 Score=42.85 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=77.7
Q ss_pred CceeeeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHH--hc-CC-----------------
Q psy8588 63 SFNMSSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLE--AS-GA----------------- 122 (265)
Q Consensus 63 ~~~iv~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq--~~-~~----------------- 122 (265)
...+-+|.+|+.. |..-+..+..==++|.|.-+|+-.|-+.|.-+.|.+|.||. ++ |+
T Consensus 81 pytL~~rVKfY~s--dP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~ 158 (616)
T KOG3530|consen 81 PYTLHLRVKFYPS--DPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFL 158 (616)
T ss_pred CeEEEEEEEeccC--ChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEec
Confidence 3456777777521 22212334443478899999999999999889999998764 32 11
Q ss_pred --------------------------HHHHHHHHHhCCCcCe---EEcCCcccCCCCCCceEEEEEecCceEEEEecCCC
Q psy8588 123 --------------------------KKEYVDLARKLKYYGF---IEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEG 173 (265)
Q Consensus 123 --------------------------k~eyL~lar~l~~YG~---v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~ 173 (265)
..+||+-|+-|..||- ++-++ .|+..-+.+...+|..= +|
T Consensus 159 p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~-------dg~ey~LGLTptGIlvf----~g 227 (616)
T KOG3530|consen 159 PNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGH-------DGSEYYLGLTPTGILVF----EG 227 (616)
T ss_pred ccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecC-------CCceeEeeccCceEEEE----EC
Confidence 2349999999999993 34443 56666677777777663 35
Q ss_pred ceEEEEEEeceEEE
Q psy8588 174 EIREGTFKVTRMRC 187 (265)
Q Consensus 174 ~~~e~~F~~trmr~ 187 (265)
..+.+.|.|.+|-.
T Consensus 228 ~~kig~f~WpkI~K 241 (616)
T KOG3530|consen 228 KKKIGLFFWPKITK 241 (616)
T ss_pred CceeeEEecchheE
Confidence 56799999999853
No 9
>KOG0792|consensus
Probab=74.04 E-value=5.6 Score=43.44 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=76.8
Q ss_pred ceeeeeeeeecccccccccCCcccchhh-hhhhhhhccCCeEEeChhHHHHHHHHHhc------------CC--------
Q psy8588 64 FNMSSPLHYWDLEYDLELMTDPVGLDIL-YAQAVSDVHRESIVVHKDTKTILNQLEAS------------GA-------- 122 (265)
Q Consensus 64 ~~iv~Rk~~wd~t~~~~L~~d~~al~Ll-Y~QAv~Dv~~gwI~~~~eq~~qL~~lq~~------------~~-------- 122 (265)
..+-.|.+++=+. -..| ++-+.++. |.|.-.|+--|-+.|+-+++.+|..+--| ..
T Consensus 96 p~l~frV~fyV~~-p~~L--qeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~s~~~l~~~~~~p 172 (1144)
T KOG0792|consen 96 PLLHFRVKFYVPD-PSGL--QEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQSQDGLEYLSVFP 172 (1144)
T ss_pred ceEEEEEEEEecC-hhHH--HHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhcCCccchhccccc
Confidence 4555666665443 2222 23345544 45888999999999998999888765321 11
Q ss_pred --------------------------------HHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEEec
Q psy8588 123 --------------------------------KKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRS 170 (265)
Q Consensus 123 --------------------------------k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~ 170 (265)
-..||+.|+.|.|||.-.|+.= |. .|..+.+.|+..+|.+..
T Consensus 173 ~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~ak--D~--~g~~i~lGi~~~Gi~V~~-- 246 (1144)
T KOG0792|consen 173 QCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAK--DL--HGNDINLGIARVGILVPG-- 246 (1144)
T ss_pred cccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccc--cC--CCcceeeeeeeceeEeec--
Confidence 1129999999999999988762 21 345677888888887752
Q ss_pred CCCceEEEEEEeceEEE
Q psy8588 171 SEGEIREGTFKVTRMRC 187 (265)
Q Consensus 171 ~~~~~~e~~F~~trmr~ 187 (265)
..| .+.+.|+|-+|.-
T Consensus 247 ~~g-~~~~~~~W~di~~ 262 (1144)
T KOG0792|consen 247 QNG-RQSVKFPWGDIIK 262 (1144)
T ss_pred cCc-cccceechhhhhh
Confidence 134 5788999999964
No 10
>KOG3552|consensus
Probab=60.40 E-value=10 Score=41.24 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=33.6
Q ss_pred eeeccccc-----ccccCCcccchhhhhhhhhhccCCeEEe--ChhHHHHHHHHH
Q psy8588 71 HYWDLEYD-----LELMTDPVGLDILYAQAVSDVHRESIVV--HKDTKTILNQLE 118 (265)
Q Consensus 71 ~~wd~t~~-----~~L~~d~~al~LlY~QAv~Dv~~gwI~~--~~eq~~qL~~lq 118 (265)
.+|++++- ..|..|++|+.+||.|-.+||...-+-+ ..+-+-.|.+|+
T Consensus 263 CLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALh 317 (1298)
T KOG3552|consen 263 CLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALH 317 (1298)
T ss_pred EEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHH
Confidence 34666654 3357999999999999999999888754 334444444443
No 11
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=58.61 E-value=86 Score=24.47 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=59.8
Q ss_pred CceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEc-cCCeeeEEE
Q psy8588 152 NTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLL-AKNKLQWIT 230 (265)
Q Consensus 152 ~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~-~~~~~~WIt 230 (265)
.+...+-+....|.|. .++......+++.+.||.+-.+ + --|+||-=+ ...-.-.++
T Consensus 21 ~g~~~L~l~~~~l~L~--~~~~~~~~~~Wpl~~lRryG~~----~----------------~~F~fEaGRrc~tG~G~f~ 78 (100)
T PF02174_consen 21 SGPYLLCLTPDELILI--DPQSGEPILEWPLRYLRRYGRD----D----------------GIFSFEAGRRCPTGEGLFW 78 (100)
T ss_dssp EEEEEEEEESSEEEEE--ETTTTEEEEEEEGGGEEEEEEE----T----------------TEEEEEESTTSTTCSEEEE
T ss_pred eEEEEEEECCCEEEEe--cCCCCceEEEEEhHHhhhhccC----C----------------CEEEEEECCcCCCCCcEEE
Confidence 4677888999999993 3344456779999999999554 1 489999844 355677999
Q ss_pred EecchHHHHHHHHHHHHHHH
Q psy8588 231 IQSNQAILMSNLLQSIIDEL 250 (265)
Q Consensus 231 i~T~qa~lms~Clq~mv~E~ 250 (265)
+.|++|--|..++++.+..+
T Consensus 79 f~t~~a~~I~~~v~~~i~~~ 98 (100)
T PF02174_consen 79 FQTPDAEEIFETVERAIKAQ 98 (100)
T ss_dssp EEESTHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHh
Confidence 99999999999998888754
No 12
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=53.54 E-value=16 Score=33.69 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=36.2
Q ss_pred eeeeeeecccccccccCCcccchhhhhhhhhhccCCeEEeChhHH
Q psy8588 67 SSPLHYWDLEYDLELMTDPVGLDILYAQAVSDVHRESIVVHKDTK 111 (265)
Q Consensus 67 v~Rk~~wd~t~~~~L~~d~~al~LlY~QAv~Dv~~gwI~~~~eq~ 111 (265)
+---|||++.-+..|++-..-.+=.|.|..-|.-.+-+....+..
T Consensus 77 ~~~ywyw~ir~e~~ll~~~~l~~ksykqla~d~gmqi~~~~~~hm 121 (268)
T PTZ00043 77 FESYWYWRIRGESTLLDPETLPKKSYKQLARDMGMQIVNEPSEHM 121 (268)
T ss_pred hhhhhhheecccccccChhhcchHHHHHHHHHhCceecCCchHHH
Confidence 345699999999999998888889999998888777665554443
No 13
>KOG1108|consensus
Probab=45.89 E-value=17 Score=33.60 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=15.7
Q ss_pred EcCCcccCCCCCCceEEEE
Q psy8588 140 EFEPCTCDFPKPNTKVVVN 158 (265)
Q Consensus 140 ~f~pC~cD~p~~~~~v~vs 158 (265)
.||||-..|.+.|++|--|
T Consensus 195 ~fp~CNsewsq~G~RvWCs 213 (281)
T KOG1108|consen 195 RFPPCNSEWSQEGTRVWCS 213 (281)
T ss_pred hCCCCchhhhccCceEEEe
Confidence 5999999999988887543
No 14
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=43.71 E-value=1.4e+02 Score=22.50 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=35.5
Q ss_pred CcCeEEcCCcccCCCCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEee
Q psy8588 135 YYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKIT 191 (265)
Q Consensus 135 ~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt 191 (265)
+||--.|+--. ..++.+.|.|+..+|.+.- +......|+|++|+.+.-.
T Consensus 1 ~YGv~~~~vkd----~~g~~~~lGV~~~Gi~v~~----~~~~~~~f~W~~I~~isf~ 49 (92)
T cd00836 1 MYGVDLHPVKD----KKGTELLLGVTAEGILVYD----DGTPINEFPWPEIRKISFK 49 (92)
T ss_pred CCCeeeEEEEC----CCCCeEEEEEeCCCcEEec----CCCEEEEEEcccceEEEEc
Confidence 47776666432 2588999999999999852 2226789999999887444
No 15
>KOG3529|consensus
Probab=42.81 E-value=11 Score=39.01 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=72.3
Q ss_pred CCcccchhhhhhhhhhccCCeEEeChhHHHHHHHHHhc------------------------------------------
Q psy8588 83 TDPVGLDILYAQAVSDVHRESIVVHKDTKTILNQLEAS------------------------------------------ 120 (265)
Q Consensus 83 ~d~~al~LlY~QAv~Dv~~gwI~~~~eq~~qL~~lq~~------------------------------------------ 120 (265)
-+++...|.|.|+-+-+-.+-|-+++|+...|.+.+-+
T Consensus 103 i~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~ 182 (596)
T KOG3529|consen 103 IQDITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIK 182 (596)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhccccHHHHHHHHH
Confidence 36677789999999999999999888888888765433
Q ss_pred ------------CCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEEecCCCceE-EEEEEeceEEE
Q psy8588 121 ------------GAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSSEGEIR-EGTFKVTRMRC 187 (265)
Q Consensus 121 ------------~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~~~~~~-e~~F~~trmr~ 187 (265)
.+..+||..|+.|+.||---|+-+ .++|+.--+.|+..+|+.. ..+..+. -..|.|.-||-
T Consensus 183 ~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~----~k~gt~~~lgv~~~gl~~y--~~~~k~~P~~~f~w~eirn 256 (596)
T KOG3529|consen 183 EWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIK----NKKGTDLWLGVDALGLNIY--DESDKLTPKIGFPWSEIRN 256 (596)
T ss_pred HHHHHHHhhhhhhHHHHHHHHhccccccccceeecC----CCCCCccccccccCCcccc--ccccCCCCCCCCCccccCC
Confidence 345689999999999995555554 2478887787887777774 2222222 44788888874
No 16
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=40.09 E-value=48 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEE
Q psy8588 150 KPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCW 188 (265)
Q Consensus 150 ~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~W 188 (265)
+.|..+.|.|+.++|.+. .. ++.+.-..|+|++|..=
T Consensus 2 ~~~~~~~LGv~~~GI~i~-~~-~~~~~~~~f~W~~I~~l 38 (90)
T PF09380_consen 2 KNGSPLWLGVSPRGISIY-RD-NNRISTQFFPWSEISKL 38 (90)
T ss_dssp TTSBEEEEEEESSEEEEE-ET-TBSSSSEEEEGGGEEEE
T ss_pred CCCCEEEEEEcCCEeEEE-eC-CCcccceeeehhheeEE
Confidence 357889999999999997 32 22111389999999653
No 17
>PF13991 BssS: BssS protein family
Probab=39.43 E-value=65 Score=24.47 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred EEEeeeccccccccccccCCCCCCcceEEEEEEEccCCe-------eeEEEEecchHHHHHHHHHHHHHHH
Q psy8588 187 CWKITINKEEDNDASNARHNTSQANQTQLSFEYLLAKNK-------LQWITIQSNQAILMSNLLQSIIDEL 250 (265)
Q Consensus 187 ~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~~~~~-------~~WIti~T~qa~lms~Clq~mv~E~ 250 (265)
-|.|..+...+ -+-|+|.||.+.+. =+-.-+.|++|--+-.=|++-++-+
T Consensus 5 GW~i~pv~~~d--------------al~lrl~yls~~~q~~e~a~~~~~~~lT~e~Ar~Li~~L~~~I~ki 61 (73)
T PF13991_consen 5 GWDIGPVDSYD--------------ALMLRLHYLSSPDQPPEEAQVGRTYWLTTEMARQLISILEAGIDKI 61 (73)
T ss_pred cceeccccccc--------------eeEEEecccCCCCCCccccccCceeEecHHHHHHHHHHHHHHHHHH
Confidence 58888654444 39999999987542 2445566888887666666655543
No 18
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=34.83 E-value=2.5e+02 Score=22.76 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=59.3
Q ss_pred cCCCCCCceEEEEEecCceEEEEecCCCceEEEEEEeceEEEEEeeeccccccccccccCCCCCCcceEEEEEEEc-cCC
Q psy8588 146 CDFPKPNTKVVVNIGLREINFRIRSSEGEIREGTFKVTRMRCWKITINKEEDNDASNARHNTSQANQTQLSFEYLL-AKN 224 (265)
Q Consensus 146 cD~p~~~~~v~vsiG~~~l~l~~~~~~~~~~e~~F~~trmr~Wrvt~~~~~~~~~~~~~~~~~~~~~l~f~FEYl~-~~~ 224 (265)
|+.+ +.+.+-++.+.|.|.-. +....-.+.+.+-+|.+-.+ .--|+||-=+ .+.
T Consensus 17 c~L~---G~y~L~v~~~~l~L~d~--~~~~~l~~WP~~~LRryG~d--------------------~~~FsFEAGRrC~t 71 (104)
T cd01203 17 CCLP---GSYMLRMGPTELQLKSE--DLGATLYMWPYRFLRKYGRD--------------------KGKFSFEAGRRCTS 71 (104)
T ss_pred cCCc---eeEEEEEcCCEEEEEcC--CCCcEEEEeehHhhhhhccc--------------------CCEEEEEecCcCCC
Confidence 5665 78999999999998742 33334556777778888665 1589999855 344
Q ss_pred eeeEEEEecchHHHHHHHHHHHHHHHh
Q psy8588 225 KLQWITIQSNQAILMSNLLQSIIDELV 251 (265)
Q Consensus 225 ~~~WIti~T~qa~lms~Clq~mv~E~l 251 (265)
-.-=+++.|.++--+-.|+++.+.-..
T Consensus 72 GeG~f~F~t~~~~~if~~v~~~i~~q~ 98 (104)
T cd01203 72 GEGVFTFDTTQGNEIFRAVEAAIKSQK 98 (104)
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHHHH
Confidence 556789999999999999888776543
No 19
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=29.03 E-value=2.1e+02 Score=24.28 Aligned_cols=76 Identities=8% Similarity=0.094 Sum_probs=46.1
Q ss_pred cCCeEEeChhHHHHHHHHHhcCCHHHHHHHHHhCCCcCeEEcCCcccCCCC------CCceEEEEEecCceEEEEecCCC
Q psy8588 100 HRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPK------PNTKVVVNIGLREINFRIRSSEG 173 (265)
Q Consensus 100 ~~gwI~~~~eq~~qL~~lq~~~~k~eyL~lar~l~~YG~v~f~pC~cD~p~------~~~~v~vsiG~~~l~l~~~~~~~ 173 (265)
..||+-+..|+..-=++-.+.++ -.++ +..|.+|.+. .|...++-+-...++| .+|.+
T Consensus 8 slGWve~~Eedl~p~~sS~avn~------cI~~--------Ls~~~~d~~d~~g~wgeGk~~~m~L~~g~lkL--iDP~~ 71 (138)
T cd01272 8 SLGWVEIAEEDLTPEKSSKAVNK------CIVD--------LSLGRNDMLDVVGRWGDGKDLFMDLDEGALKL--IDPEN 71 (138)
T ss_pred ccceEEcchhhcCCcccHHHHHH------HHHH--------HhccccccccCcCcccCcceeEEEecCCceEe--eCCCC
Confidence 47999887555432222222222 2233 3345555542 3455666666666666 56777
Q ss_pred ceEEEEEEeceEEEEEee
Q psy8588 174 EIREGTFKVTRMRCWKIT 191 (265)
Q Consensus 174 ~~~e~~F~~trmr~Wrvt 191 (265)
...-.+|++.+||.|=|-
T Consensus 72 ~s~LhSqPI~~IRvwGvG 89 (138)
T cd01272 72 LTVLHSQPIHTIRVWGVG 89 (138)
T ss_pred CceEEeeeeeEEEEEEec
Confidence 666779999999999777
No 20
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=26.90 E-value=78 Score=25.06 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=38.8
Q ss_pred ccCCeEEeChhHHHHHHHHHhcCCHHHHHHHHHhCCCcCeEEcCCcccCCCCCCceEEEEEecCceEEEEecC
Q psy8588 99 VHRESIVVHKDTKTILNQLEASGAKKEYVDLARKLKYYGFIEFEPCTCDFPKPNTKVVVNIGLREINFRIRSS 171 (265)
Q Consensus 99 v~~gwI~~~~eq~~qL~~lq~~~~k~eyL~lar~l~~YG~v~f~pC~cD~p~~~~~v~vsiG~~~l~l~~~~~ 171 (265)
...|-+.+. .+.|.+++|.+|..+.|.|.. .+..+.|..|+.+++|....+
T Consensus 63 ~~~G~~~v~---------------ak~l~~ivk~lp~~~~I~i~~-------~~~~l~I~~~~~~f~l~~~~~ 113 (120)
T PF00712_consen 63 EEEGSILVP---------------AKKLFDIVKKLPDDEEITIEV-------EENKLTIKSGKSRFKLPTLDA 113 (120)
T ss_dssp EE-EEEEEE---------------HHHHHHHHHHSSSTSEEEEEE-------ETTEEEEEETTEEEEEE-BEG
T ss_pred cCCeEEEEE---------------hHHHHHHHHhCCCCCeEEEEE-------eCCEEEEEECCEEEEEcCCCH
Confidence 367888775 456889999999999999875 457888888998888876543
Done!