BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy859
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+P L LDEPTSG+D ++ + +L Q + G +I+++SH+M E E LC+R+ ++
Sbjct: 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ LDEPT+G+DP+ + +L ++QK G +I++ +H +D C+ + +M+
Sbjct: 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK 218
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+P ++ DEPTS +DP + +V+ Q+ G ++V+ +H M + +R+ M G
Sbjct: 156 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 214
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+P ++ DEPTS +DP + +V+ Q+ G ++V+ +H M + +R+ M G
Sbjct: 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMR 82
+ +P ++ LDEP S +D + R + A L ++QK G + V +H E A+ +R+ ++R
Sbjct: 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIR 208
Query: 83 GNEL 86
E+
Sbjct: 209 EGEI 212
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
+P L+F DEPT +D + R+ + +I + G SIV+ +H + E
Sbjct: 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAE 204
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+P ++ DE TS +DP + + +L I ++ G +I+L +H MD + +C+ + ++
Sbjct: 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 217
Query: 85 EL 86
EL
Sbjct: 218 EL 219
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
D + LDEP S +DP S+ ++ VL ++ G+ I+L +H ++ + + L I G
Sbjct: 158 DTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNG 215
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
DP L+ LDEP S +D R ++ +++ ++ G+S V SH +E +R+ +M+
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMK 213
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+P ++ D+ TS +DP + + +L I ++ G +I+L +H MD + +C+ + ++
Sbjct: 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240
Query: 85 EL 86
EL
Sbjct: 241 EL 242
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR 82
+ DP L+ LDEP S +D R A++ ++Q + G ++++ SH + A+ +R+ ++
Sbjct: 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
Query: 83 GNEL 86
+L
Sbjct: 216 KGKL 219
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL-----TSHS 67
QRQ I D P++ LDE TS +D S + A L ++QK S+V+ T
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544
Query: 68 MDECEALCNRLTIMRG--NELRKRRNCLS 94
DE + + + + RG N+L + R +
Sbjct: 545 ADEIVVVEDGVIVERGTHNDLLEHRGVYA 573
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR 82
+ DP L+ LDEP S +D R A++ ++Q + G ++++ SH + A+ +R+ ++
Sbjct: 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
Query: 83 GNEL 86
+L
Sbjct: 216 KGKL 219
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QRQ I D P++ LDE TS +D S + A L ++QK +++++ +H + E
Sbjct: 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAHRLSTIE 543
Query: 73 ALCNRLTIMRGNELRKRRNC 92
L + G + + R+
Sbjct: 544 QADEILVVDEGEIIERGRHA 563
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87
L+ LDEPTS +D ++ + ++L + Q ++V T+H ++ A+ N+ ++ +
Sbjct: 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFK 208
Query: 88 --KRRNCLSFRKEKMRLILTFPL 108
+ RN L+ E + + P+
Sbjct: 209 FGETRNILT--SENLTALFHLPM 229
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
+P ++ DEPTS +DP + ++ Q+ + G+++V+ +H M
Sbjct: 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+PP++ DEPT +D + ++ +L ++ ++ G+++V+ +H ++ R+ ++
Sbjct: 163 NPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDG 221
Query: 85 ELRKRRNCLSF 95
E+ + F
Sbjct: 222 EVEREEKLRGF 232
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL-TSHSMDECEALCNRLTIMR 82
+ +P ++ LDEP S +DP ++ +LS + K + VL +H E + +R+ ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM 202
Query: 83 GNEL 86
+L
Sbjct: 203 DGKL 206
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88
L+ LD+P + +D + L +LS + + G +IV++SH ++ +R +++G ++
Sbjct: 154 LLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM-- 211
Query: 89 RRNCLSFRKEKMRLILTFP 107
S R+E+ +LT P
Sbjct: 212 ---LASGRREE---VLTPP 224
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ +DEP +GV P H ++ + +++ G + ++ H +D + L +M
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ +DEP +GV P H ++ + +++ G + ++ H +D + L +M
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL-----TSHS 67
QRQ I D P++ LDE TS +D S + A L ++QK S+V+ T
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 68 MDECEALCNRLTIMRGNE 85
DE + + + + RG
Sbjct: 545 ADEIVVVEDGIIVERGTH 562
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88
L+ LDEP + +D + L +LS + + G +IV +SH ++ +R +++G
Sbjct: 154 LLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGG---- 209
Query: 89 RRNCLSFRKEKMRLILTFP 107
+ S R+E+ +LT P
Sbjct: 210 -KXLASGRREE---VLTPP 224
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+PP++ D+PT +D + ++ +L ++ ++ G+++V+ +H ++ R+ ++
Sbjct: 163 NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDG 221
Query: 85 ELRKRRNCLSF 95
E+ + F
Sbjct: 222 EVEREEKLRGF 232
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ LDEP G+D + L ++ + + G++++L SH ++ +R+ ++
Sbjct: 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 211
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ LDEP G+D + L ++ + + G++++L SH ++ +R+ ++
Sbjct: 156 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 213
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ +D+P +GV P H ++ + +++ G + ++ H +D + L +M
Sbjct: 171 NPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88
L+ LD+P +D + L +LS + + G +IV++SH ++ +R +++G ++
Sbjct: 154 LLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM-- 211
Query: 89 RRNCLSFRKEKMRLILTFP 107
S R+E+ +LT P
Sbjct: 212 ---LASGRREE---VLTPP 224
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88
L+ LDEP + +D + L +LS + + G +IV +SH ++ +R +++G
Sbjct: 154 LLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGG---- 209
Query: 89 RRNCLSFRKEKMRLILTFP 107
+ S R+E+ +LT P
Sbjct: 210 -KXLASGRREE---VLTPP 224
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+PP++ D+PT +D + ++ +L ++ ++ G+++V+ +H ++ R+ ++
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDG 221
Query: 85 ELRKRRNCLSF 95
E+ + F
Sbjct: 222 EVEREEKLRGF 232
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSHSMD 69
P +V LDEP VD RH V+S+ I++ G+ +L +H +D
Sbjct: 147 PEIVGLDEPFENVDAARRH----VISRYIKEYGKEGILVTHELD 186
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 31.6 bits (70), Expect = 0.37, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
LDEPT+G+ P RL L ++ G +++ H M
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 29 LVFLDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEPT+G VD I+ RL VL ++ G ++++ H++D
Sbjct: 567 LYILDEPTTGLHVDDIA--RLLDVLHRLVDNGDTVLVIEHNLD 607
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 29 LVFLDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEPT+G VD I+ RL VL ++ G ++++ H++D
Sbjct: 869 LYILDEPTTGLHVDDIA--RLLDVLHRLVDNGDTVLVIEHNLD 909
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 0.67, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEPT+G+ RL VL ++ G ++++ H++D
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 909
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 31 FLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
F DEP+S +D R ++ V+ ++ G+++++ H + + L + + ++ G
Sbjct: 237 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG 289
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 26 DPPLVFLDEPTSGVDPISR-HRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
DP ++ LDEPTS +D +++ H + + + +++ +H + L +++ ++ G
Sbjct: 172 DPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGG 231
Query: 85 ELRKRRNCLSFRKEKMR 101
L + + K +
Sbjct: 232 NLVEYNSTFQIFKNPLH 248
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 31 FLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
F DEP+S +D R ++ V+ ++ G+++++ H + + L + + ++ G
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG 303
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 111 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 152
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 119 ALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIK 178
A+CN + V E I ++ Y + L LREG Q E+IR G I+
Sbjct: 94 AVCNIPSAAV--EETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIR 151
Query: 179 DEHKGLIHY-------QILDTTFSWSVLFAK---MEAVKTSMDIVEDYSLSD 220
E GLI + + F +SV+F + ++ S+ + Y+L D
Sbjct: 152 GETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQD 203
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 106 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 147
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 30 VFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
+ LDEPT +D R +L + +++ Q I++T H
Sbjct: 309 IILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH 345
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 76 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 117
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 291 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 332
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ L+ LDEPT +D R +L ++ + K ++L SH
Sbjct: 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEPT G+ +L VL ++ G ++++ H++D
Sbjct: 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ DE TS +D S H + + +I K G+++++ +H + + +R+ +M
Sbjct: 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVM 210
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ DE TS +D S H + + +I K G+++++ +H + + +R+ +M
Sbjct: 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVM 216
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ DE TS +D S H + + +I K G+++++ +H + + +R+ +M
Sbjct: 157 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVM 212
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ DE TS +D S H + + +I K G+++++ +H + + +R+ +M
Sbjct: 157 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVM 212
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus
Thermophilus
Length = 228
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 162 QLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDT 221
+ E IR E KGR+E +++ G IH + +F L + A +++ + T
Sbjct: 149 NIGEIIR-EIKGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT 207
Query: 222 TLEQVFI 228
L V++
Sbjct: 208 FLRSVYV 214
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 25 GDPPLVFLDEPTSGVDPISR 44
G P ++ LDEP +G+D I+R
Sbjct: 178 GQPQVLILDEPAAGLDFIAR 197
>pdb|3S4L|A Chain A, The Crispr-Associated Cas3 Hd Domain Protein Mj0384 From
Methanocaldococcus Jannaschii
Length = 244
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 60 SIVLTSHSMDECEALCNRLTIMRGNELRKRRNCLSFRKEKMRLILTFPLCFPSSMDECEA 119
I++ H + + + R I + + FR E + T+ + D+ A
Sbjct: 60 KILIKLHDIGKASKIYQRAII------NDQEKLMGFRHELVSAYYTYHILLKKFGDKNLA 113
Query: 120 LCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVE-IK 178
LT+M+ E +G I LK++ E LD+LK +F G +E +
Sbjct: 114 FIGALTVMLHHEPIIMGQIRNLKKKELTA--------EVVLDKLK-----KFDGMIEDFE 160
Query: 179 DEHKGLIHYQILD 191
D K LI Y I D
Sbjct: 161 DLIKKLIGYSIGD 173
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 228
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 162 QLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDT 221
+ E IR GR+E +++ G IH + +F L + A +++ + T
Sbjct: 148 NIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT 207
Query: 222 TLEQVFIAFAKG 233
L V++ A G
Sbjct: 208 FLRSVYVTTAMG 219
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 162 QLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDT 221
+ E IR GR+E +++ G IH + +F L + A +++ + T
Sbjct: 149 NIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT 208
Query: 222 TLEQVFIAFAKG 233
L V++ A G
Sbjct: 209 FLRSVYVTTAMG 220
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
+ LDEPT+G+ +L V++ + G ++++ H++D
Sbjct: 887 VYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 64
+ P ++ LD+ TS VDPI+ R+ L + K + ++T
Sbjct: 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,077,930
Number of Sequences: 62578
Number of extensions: 269338
Number of successful extensions: 695
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 62
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)