Query psy859
Match_columns 247
No_of_seqs 184 out of 2165
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:39:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0059|consensus 100.0 8.4E-29 1.8E-33 254.8 15.2 180 11-238 696-882 (885)
2 TIGR01257 rim_protein retinal- 99.9 1.5E-25 3.3E-30 244.8 22.0 176 11-236 2068-2254(2272)
3 TIGR01257 rim_protein retinal- 99.9 7.8E-25 1.7E-29 239.3 21.5 174 12-234 1060-1280(2272)
4 COG4152 ABC-type uncharacteriz 99.9 1.3E-23 2.9E-28 188.6 17.0 164 14-235 131-299 (300)
5 TIGR01188 drrA daunorubicin re 99.9 1.9E-22 4.1E-27 184.0 20.8 169 12-231 123-301 (302)
6 PRK13537 nodulation ABC transp 99.9 4.5E-22 9.8E-27 182.5 20.8 162 12-234 137-303 (306)
7 PRK13536 nodulation factor exp 99.9 1.6E-21 3.4E-26 181.8 20.6 161 13-234 172-337 (340)
8 TIGR03522 GldA_ABC_ATP gliding 99.9 5.3E-21 1.1E-25 174.6 20.3 164 12-230 132-300 (301)
9 COG1131 CcmA ABC-type multidru 99.9 2E-21 4.3E-26 177.7 17.3 151 13-232 136-292 (293)
10 TIGR01288 nodI ATP-binding ABC 99.9 1.8E-20 3.9E-25 171.1 20.6 161 13-234 135-300 (303)
11 COG4555 NatA ABC-type Na+ tran 99.8 3.3E-20 7.1E-25 162.9 10.3 74 14-87 134-212 (245)
12 COG4586 ABC-type uncharacteriz 99.8 1.4E-19 3E-24 164.8 12.2 162 13-233 156-323 (325)
13 COG1127 Ttg2A ABC-type transpo 99.7 3.2E-17 7E-22 146.9 9.9 73 15-87 147-225 (263)
14 cd03226 ABC_cobalt_CbiO_domain 99.7 5.2E-17 1.1E-21 139.4 10.3 75 13-87 126-205 (205)
15 PRK09536 btuD corrinoid ABC tr 99.7 1.5E-16 3.3E-21 151.8 13.3 81 12-92 138-223 (402)
16 cd03219 ABC_Mj1267_LivG_branch 99.7 1.2E-16 2.7E-21 139.5 11.2 75 13-87 143-222 (236)
17 PRK11614 livF leucine/isoleuci 99.7 1.2E-16 2.6E-21 140.0 11.1 76 13-88 137-217 (237)
18 cd03261 ABC_Org_Solvent_Resist 99.7 1.1E-16 2.4E-21 140.1 10.9 75 13-87 136-216 (235)
19 cd03256 ABC_PhnC_transporter A 99.7 1.3E-16 2.8E-21 139.5 11.3 75 13-87 144-224 (241)
20 PRK13641 cbiO cobalt transport 99.7 1.4E-16 3E-21 144.5 11.6 75 13-87 145-224 (287)
21 PRK13643 cbiO cobalt transport 99.7 1.4E-16 2.9E-21 144.8 11.4 75 13-87 144-223 (288)
22 PRK13637 cbiO cobalt transport 99.7 1.9E-16 4.2E-21 143.7 11.7 76 12-87 143-224 (287)
23 TIGR00960 3a0501s02 Type II (G 99.7 1.3E-16 2.8E-21 137.8 9.8 74 13-86 138-216 (216)
24 cd03296 ABC_CysA_sulfate_impor 99.7 2E-16 4.3E-21 139.0 11.0 76 12-87 135-216 (239)
25 cd03259 ABC_Carb_Solutes_like 99.7 1.6E-16 3.5E-21 136.9 10.2 75 13-87 130-210 (213)
26 cd03224 ABC_TM1139_LivF_branch 99.7 2.3E-16 5E-21 136.4 11.1 76 12-87 131-211 (222)
27 cd03258 ABC_MetN_methionine_tr 99.7 2.3E-16 5.1E-21 137.6 11.2 76 12-87 139-220 (233)
28 PRK15093 antimicrobial peptide 99.7 2.4E-16 5.1E-21 146.1 11.7 76 13-88 158-239 (330)
29 cd03218 ABC_YhbG The ABC trans 99.7 2.4E-16 5.1E-21 137.3 11.1 76 12-87 132-212 (232)
30 PRK11264 putative amino-acid A 99.7 2.7E-16 5.9E-21 138.6 11.4 76 12-87 143-223 (250)
31 PRK11300 livG leucine/isoleuci 99.7 2.8E-16 6.1E-21 138.9 11.4 75 13-87 153-233 (255)
32 COG1122 CbiO ABC-type cobalt t 99.7 2E-16 4.3E-21 141.4 10.5 74 14-87 139-218 (235)
33 cd03268 ABC_BcrA_bacitracin_re 99.7 2.5E-16 5.4E-21 135.3 10.6 76 12-87 125-205 (208)
34 PRK13651 cobalt transporter AT 99.7 2.3E-16 5.1E-21 144.9 11.1 77 11-87 163-244 (305)
35 PRK11153 metN DL-methionine tr 99.7 2.6E-16 5.5E-21 146.7 11.5 77 13-89 140-222 (343)
36 PRK13634 cbiO cobalt transport 99.7 2.7E-16 5.8E-21 143.0 11.3 75 13-87 145-225 (290)
37 TIGR02315 ABC_phnC phosphonate 99.7 2.7E-16 5.8E-21 137.9 10.9 75 13-87 145-225 (243)
38 COG1126 GlnQ ABC-type polar am 99.7 2.2E-16 4.8E-21 139.8 10.4 74 15-88 138-216 (240)
39 PRK13652 cbiO cobalt transport 99.7 3.1E-16 6.7E-21 141.4 11.3 75 13-87 137-217 (277)
40 cd03265 ABC_DrrA DrrA is the A 99.7 2.7E-16 5.9E-21 136.3 10.5 76 13-88 131-212 (220)
41 cd03225 ABC_cobalt_CbiO_domain 99.7 2.1E-16 4.6E-21 135.8 9.6 74 12-85 133-211 (211)
42 PRK11022 dppD dipeptide transp 99.7 3.1E-16 6.6E-21 145.4 11.4 76 13-88 153-234 (326)
43 PRK13636 cbiO cobalt transport 99.7 3.2E-16 6.9E-21 141.9 11.2 76 12-87 140-221 (283)
44 TIGR01978 sufC FeS assembly AT 99.7 3.2E-16 7E-21 137.2 10.9 74 14-87 145-224 (243)
45 PRK13638 cbiO cobalt transport 99.7 3.7E-16 8.1E-21 140.2 11.4 76 12-87 135-215 (271)
46 cd03262 ABC_HisP_GlnQ_permease 99.7 2.4E-16 5.2E-21 135.4 9.7 74 13-86 135-213 (213)
47 PRK09493 glnQ glutamine ABC tr 99.7 3E-16 6.5E-21 137.7 10.5 77 13-89 136-217 (240)
48 TIGR02314 ABC_MetN D-methionin 99.7 3.3E-16 7.1E-21 146.6 11.3 82 13-94 140-227 (343)
49 cd03257 ABC_NikE_OppD_transpor 99.7 3E-16 6.4E-21 136.0 10.2 76 12-87 144-225 (228)
50 cd03294 ABC_Pro_Gly_Bertaine T 99.7 4.2E-16 9.1E-21 140.0 11.4 76 12-87 159-240 (269)
51 cd03216 ABC_Carb_Monos_I This 99.7 4.4E-16 9.6E-21 130.2 10.8 74 14-87 83-161 (163)
52 PRK13647 cbiO cobalt transport 99.7 4.5E-16 9.8E-21 140.3 11.6 75 13-87 138-217 (274)
53 TIGR02770 nickel_nikD nickel i 99.7 4.6E-16 1E-20 136.1 11.3 76 12-87 124-205 (230)
54 TIGR02673 FtsE cell division A 99.7 2.6E-16 5.7E-21 135.5 9.5 73 13-85 137-214 (214)
55 cd03297 ABC_ModC_molybdenum_tr 99.7 3.3E-16 7.1E-21 135.3 10.1 75 13-87 131-211 (214)
56 cd03215 ABC_Carb_Monos_II This 99.7 2.9E-16 6.3E-21 133.0 9.6 73 14-86 105-182 (182)
57 TIGR03410 urea_trans_UrtE urea 99.7 4.2E-16 9E-21 135.8 10.8 77 11-87 129-211 (230)
58 PRK10619 histidine/lysine/argi 99.7 5.2E-16 1.1E-20 137.9 11.6 75 13-87 152-231 (257)
59 TIGR01184 ntrCD nitrate transp 99.7 3E-16 6.6E-21 137.6 10.0 77 12-88 113-195 (230)
60 cd03293 ABC_NrtD_SsuB_transpor 99.7 3.6E-16 7.8E-21 135.6 10.2 77 12-88 130-214 (220)
61 cd03260 ABC_PstB_phosphate_tra 99.7 4.6E-16 9.9E-21 135.3 10.7 76 12-88 140-220 (227)
62 cd03266 ABC_NatA_sodium_export 99.7 4.6E-16 1E-20 134.3 10.5 75 13-87 136-215 (218)
63 PRK09473 oppD oligopeptide tra 99.7 4.4E-16 9.5E-21 144.6 11.1 75 14-88 162-242 (330)
64 PRK13649 cbiO cobalt transport 99.7 5.3E-16 1.2E-20 139.6 11.4 76 12-87 144-224 (280)
65 TIGR03258 PhnT 2-aminoethylpho 99.7 4.7E-16 1E-20 146.4 11.4 80 13-92 137-223 (362)
66 PRK10908 cell division protein 99.7 4.5E-16 9.7E-21 135.2 10.4 75 13-87 137-216 (222)
67 cd03301 ABC_MalK_N The N-termi 99.7 4.2E-16 9.2E-21 134.1 10.2 76 13-88 130-211 (213)
68 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 3.1E-16 6.8E-21 135.4 9.4 73 13-86 140-218 (218)
69 PRK13646 cbiO cobalt transport 99.7 5.7E-16 1.2E-20 140.4 11.4 75 13-87 145-225 (286)
70 COG0444 DppD ABC-type dipeptid 99.7 2.5E-16 5.5E-21 145.6 9.1 75 14-88 154-234 (316)
71 cd03298 ABC_ThiQ_thiamine_tran 99.7 4.7E-16 1E-20 133.8 10.1 75 13-87 128-208 (211)
72 TIGR03411 urea_trans_UrtD urea 99.7 6.6E-16 1.4E-20 135.5 11.2 73 14-87 144-221 (242)
73 PRK11831 putative ABC transpor 99.7 6.1E-16 1.3E-20 138.8 11.2 76 12-87 142-223 (269)
74 PRK14268 phosphate ABC transpo 99.7 6.9E-16 1.5E-20 137.3 11.4 75 12-87 153-232 (258)
75 TIGR01187 potA spermidine/putr 99.7 6E-16 1.3E-20 143.1 11.4 83 12-94 99-187 (325)
76 TIGR01186 proV glycine betaine 99.7 6.6E-16 1.4E-20 145.6 11.7 81 13-93 129-215 (363)
77 PRK15079 oligopeptide ABC tran 99.7 6.4E-16 1.4E-20 143.7 11.4 76 13-88 161-242 (331)
78 cd03295 ABC_OpuCA_Osmoprotecti 99.7 7.1E-16 1.5E-20 135.7 11.1 76 12-87 134-215 (242)
79 PRK10895 lipopolysaccharide AB 99.7 7.2E-16 1.6E-20 135.4 11.1 76 12-87 136-216 (241)
80 PRK14242 phosphate transporter 99.7 7E-16 1.5E-20 136.4 11.1 75 12-87 148-227 (253)
81 cd03235 ABC_Metallic_Cations A 99.7 5.1E-16 1.1E-20 133.8 9.9 73 14-86 133-210 (213)
82 PRK10771 thiQ thiamine transpo 99.7 6.7E-16 1.5E-20 135.1 10.8 82 13-94 129-216 (232)
83 PRK13645 cbiO cobalt transport 99.7 6.8E-16 1.5E-20 139.8 11.1 78 10-87 147-230 (289)
84 PRK11231 fecE iron-dicitrate t 99.7 7.3E-16 1.6E-20 136.8 11.1 75 13-87 138-217 (255)
85 PRK13644 cbiO cobalt transport 99.7 7.4E-16 1.6E-20 138.9 11.2 75 12-87 135-214 (274)
86 cd03292 ABC_FtsE_transporter F 99.7 5.2E-16 1.1E-20 133.4 9.8 74 13-86 136-214 (214)
87 PRK13631 cbiO cobalt transport 99.6 7.8E-16 1.7E-20 142.4 11.4 75 13-87 176-255 (320)
88 PRK11308 dppF dipeptide transp 99.6 7.9E-16 1.7E-20 142.7 11.4 76 13-88 154-235 (327)
89 cd03269 ABC_putative_ATPase Th 99.6 8E-16 1.7E-20 132.3 10.5 76 12-87 127-207 (210)
90 PRK13639 cbiO cobalt transport 99.6 1E-15 2.2E-20 138.0 11.6 75 13-87 137-216 (275)
91 PRK14245 phosphate ABC transpo 99.6 1.1E-15 2.3E-20 135.2 11.2 74 13-87 146-224 (250)
92 TIGR03771 anch_rpt_ABC anchore 99.6 9.1E-16 2E-20 134.0 10.6 78 12-90 112-194 (223)
93 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 1.3E-15 2.8E-20 133.6 11.6 75 12-87 131-211 (236)
94 COG1125 OpuBA ABC-type proline 99.6 4E-16 8.8E-21 141.3 8.6 74 14-87 136-215 (309)
95 PRK10575 iron-hydroxamate tran 99.6 9.2E-16 2E-20 137.2 10.9 75 13-87 147-227 (265)
96 TIGR00972 3a0107s01c2 phosphat 99.6 1.3E-15 2.7E-20 134.5 11.5 74 13-87 144-222 (247)
97 PRK11701 phnK phosphonate C-P 99.6 1.1E-15 2.4E-20 135.9 11.1 75 13-87 151-231 (258)
98 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 1.2E-15 2.6E-20 133.6 11.2 73 13-87 139-216 (238)
99 TIGR02769 nickel_nikE nickel i 99.6 9.9E-16 2.1E-20 137.0 10.8 76 12-87 149-230 (265)
100 PRK11124 artP arginine transpo 99.6 9.7E-16 2.1E-20 134.6 10.6 77 13-89 141-222 (242)
101 PRK13546 teichoic acids export 99.6 1.4E-15 3E-20 137.1 11.8 76 12-87 142-222 (264)
102 PRK11650 ugpC glycerol-3-phosp 99.6 1.2E-15 2.5E-20 143.3 11.7 82 13-94 134-221 (356)
103 TIGR03415 ABC_choXWV_ATP choli 99.6 1.1E-15 2.4E-20 145.0 11.6 76 13-88 164-245 (382)
104 PRK10851 sulfate/thiosulfate t 99.6 1.2E-15 2.6E-20 143.1 11.6 82 13-94 136-223 (353)
105 PRK15112 antimicrobial peptide 99.6 1.1E-15 2.5E-20 136.9 11.0 76 12-87 148-229 (267)
106 cd03263 ABC_subfamily_A The AB 99.6 1.2E-15 2.6E-20 131.9 10.7 74 13-87 133-211 (220)
107 TIGR03873 F420-0_ABC_ATP propo 99.6 1.2E-15 2.5E-20 135.6 10.9 75 13-87 137-216 (256)
108 PRK14273 phosphate ABC transpo 99.6 1.4E-15 3.1E-20 134.6 11.4 74 13-87 150-228 (254)
109 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 1.2E-15 2.5E-20 133.6 10.7 76 12-87 141-221 (224)
110 TIGR01277 thiQ thiamine ABC tr 99.6 1.2E-15 2.6E-20 131.9 10.6 76 13-88 128-209 (213)
111 PRK14250 phosphate ABC transpo 99.6 9.8E-16 2.1E-20 135.1 10.3 80 13-92 131-216 (241)
112 PRK14241 phosphate transporter 99.6 1.3E-15 2.9E-20 135.4 11.2 73 13-86 148-225 (258)
113 PRK10418 nikD nickel transport 99.6 1.6E-15 3.6E-20 134.6 11.5 76 12-87 139-220 (254)
114 PRK11000 maltose/maltodextrin 99.6 1.2E-15 2.7E-20 143.6 11.3 82 13-94 133-220 (369)
115 cd03246 ABCC_Protease_Secretio 99.6 1E-15 2.2E-20 128.7 9.6 72 14-86 97-173 (173)
116 PRK14274 phosphate ABC transpo 99.6 1.5E-15 3.2E-20 135.1 11.2 74 13-87 155-233 (259)
117 PRK14248 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 135.8 11.2 74 13-87 164-242 (268)
118 TIGR02142 modC_ABC molybdenum 99.6 1.4E-15 3E-20 142.2 11.5 77 13-89 131-213 (354)
119 PRK03695 vitamin B12-transport 99.6 1.6E-15 3.4E-20 134.6 11.2 76 12-87 125-212 (248)
120 TIGR03740 galliderm_ABC gallid 99.6 1.3E-15 2.9E-20 132.3 10.5 77 12-88 123-204 (223)
121 PRK14239 phosphate transporter 99.6 1.8E-15 3.8E-20 133.6 11.4 74 13-87 148-226 (252)
122 PRK13633 cobalt transporter AT 99.6 1.3E-15 2.8E-20 137.6 10.7 74 13-87 144-223 (280)
123 PRK11144 modC molybdate transp 99.6 1.3E-15 2.9E-20 142.4 11.2 83 12-94 127-215 (352)
124 PRK13650 cbiO cobalt transport 99.6 1.5E-15 3.3E-20 137.2 11.2 74 13-87 140-219 (279)
125 TIGR02323 CP_lyasePhnK phospho 99.6 1.7E-15 3.6E-20 134.0 11.2 75 13-87 148-228 (253)
126 PRK09580 sufC cysteine desulfu 99.6 2E-15 4.3E-20 132.8 11.6 75 13-87 145-225 (248)
127 cd03254 ABCC_Glucan_exporter_l 99.6 1.8E-15 4E-20 131.5 11.2 73 13-87 139-216 (229)
128 PRK13548 hmuV hemin importer A 99.6 1.7E-15 3.8E-20 135.1 11.3 76 12-87 133-220 (258)
129 PRK14247 phosphate ABC transpo 99.6 1.8E-15 3.9E-20 133.6 11.2 74 13-87 146-224 (250)
130 COG1123 ATPase components of v 99.6 1.2E-15 2.6E-20 149.7 11.0 75 14-88 155-235 (539)
131 cd03230 ABC_DR_subfamily_A Thi 99.6 1.3E-15 2.8E-20 128.0 9.8 73 14-86 96-173 (173)
132 TIGR02211 LolD_lipo_ex lipopro 99.6 1.3E-15 2.8E-20 131.8 10.0 75 12-87 140-220 (221)
133 cd03251 ABCC_MsbA MsbA is an e 99.6 1.7E-15 3.7E-20 132.1 10.9 74 12-87 137-215 (234)
134 PRK14267 phosphate ABC transpo 99.6 2E-15 4.4E-20 133.5 11.5 74 13-87 149-227 (253)
135 PRK11432 fbpC ferric transport 99.6 1.6E-15 3.5E-20 142.2 11.4 83 11-93 134-222 (351)
136 cd03252 ABCC_Hemolysin The ABC 99.6 2E-15 4.3E-20 132.1 11.2 73 13-87 138-215 (237)
137 TIGR03265 PhnT2 putative 2-ami 99.6 1.6E-15 3.5E-20 142.2 11.3 83 12-94 133-221 (353)
138 PRK14270 phosphate ABC transpo 99.6 2.1E-15 4.5E-20 133.4 11.4 75 12-87 146-225 (251)
139 PRK10070 glycine betaine trans 99.6 1.6E-15 3.5E-20 144.7 11.3 77 13-89 164-246 (400)
140 cd03300 ABC_PotA_N PotA is an 99.6 2.2E-15 4.9E-20 131.9 11.3 76 12-87 129-210 (232)
141 cd03214 ABC_Iron-Siderophores_ 99.6 1.8E-15 3.9E-20 128.0 10.3 76 12-87 96-177 (180)
142 cd03264 ABC_drug_resistance_li 99.6 1.7E-15 3.8E-20 130.3 10.4 75 12-87 129-208 (211)
143 PRK13635 cbiO cobalt transport 99.6 2E-15 4.4E-20 136.5 11.3 75 12-87 139-219 (279)
144 PRK09984 phosphonate/organopho 99.6 1.9E-15 4.2E-20 134.6 11.0 74 14-87 153-232 (262)
145 PRK14240 phosphate transporter 99.6 2.2E-15 4.8E-20 133.0 11.3 74 13-87 146-224 (250)
146 TIGR03005 ectoine_ehuA ectoine 99.6 2.1E-15 4.7E-20 133.4 11.2 76 12-87 145-226 (252)
147 PRK10253 iron-enterobactin tra 99.6 2.3E-15 4.9E-20 134.7 11.5 75 13-87 143-223 (265)
148 PRK14244 phosphate ABC transpo 99.6 2.3E-15 5.1E-20 133.1 11.3 75 12-87 148-227 (251)
149 COG1124 DppF ABC-type dipeptid 99.6 1E-15 2.2E-20 137.2 9.0 74 14-87 142-221 (252)
150 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 1.5E-15 3.2E-20 137.2 9.9 72 14-85 140-216 (254)
151 cd03217 ABC_FeS_Assembly ABC-t 99.6 2.4E-15 5.2E-20 129.3 10.7 76 13-88 104-185 (200)
152 PRK14259 phosphate ABC transpo 99.6 2.2E-15 4.8E-20 135.3 10.8 73 13-86 154-231 (269)
153 TIGR00968 3a0106s01 sulfate AB 99.6 2.7E-15 5.8E-20 132.0 11.1 76 12-87 129-210 (237)
154 CHL00131 ycf16 sulfate ABC tra 99.6 2E-15 4.3E-20 133.3 10.3 75 14-88 152-232 (252)
155 COG4175 ProV ABC-type proline/ 99.6 7.5E-16 1.6E-20 142.9 7.9 73 15-87 166-244 (386)
156 cd03267 ABC_NatA_like Similar 99.6 2.2E-15 4.8E-20 132.6 10.5 76 12-87 152-233 (236)
157 PRK14253 phosphate ABC transpo 99.6 3E-15 6.5E-20 132.1 11.4 74 13-87 145-223 (249)
158 PRK13549 xylose transporter AT 99.6 2.3E-15 5E-20 146.0 11.6 80 13-92 405-489 (506)
159 PRK14262 phosphate ABC transpo 99.6 3.1E-15 6.7E-20 132.0 11.4 74 13-87 146-224 (250)
160 PRK10938 putative molybdenum t 99.6 2.1E-15 4.6E-20 145.5 11.1 81 12-92 134-219 (490)
161 COG1135 AbcC ABC-type metal io 99.6 1.1E-15 2.5E-20 141.1 8.7 78 15-92 143-226 (339)
162 PRK14272 phosphate ABC transpo 99.6 3.5E-15 7.7E-20 131.6 11.5 74 13-87 148-226 (252)
163 PRK10584 putative ABC transpor 99.6 2.4E-15 5.2E-20 130.9 10.3 74 13-87 146-225 (228)
164 PRK14249 phosphate ABC transpo 99.6 3.6E-15 7.8E-20 131.9 11.5 75 12-87 146-225 (251)
165 PRK14235 phosphate transporter 99.6 3.3E-15 7.1E-20 133.9 11.3 75 12-87 162-241 (267)
166 PRK10744 pstB phosphate transp 99.6 3.5E-15 7.6E-20 133.0 11.4 75 12-87 155-234 (260)
167 PRK14256 phosphate ABC transpo 99.6 3.4E-15 7.4E-20 132.1 11.2 74 13-87 148-226 (252)
168 cd03229 ABC_Class3 This class 99.6 2.3E-15 5E-20 127.1 9.7 72 14-85 101-178 (178)
169 PRK14243 phosphate transporter 99.6 3.4E-15 7.3E-20 133.7 11.2 73 13-86 151-228 (264)
170 PRK13549 xylose transporter AT 99.6 2.5E-15 5.5E-20 145.7 11.3 85 12-96 142-231 (506)
171 cd03299 ABC_ModC_like Archeal 99.6 3.7E-15 8E-20 131.0 11.2 74 14-87 130-209 (235)
172 PRK14258 phosphate ABC transpo 99.6 3.7E-15 8.1E-20 133.0 11.3 72 12-83 149-226 (261)
173 PRK14269 phosphate ABC transpo 99.6 3.8E-15 8.3E-20 131.5 11.2 75 12-87 141-220 (246)
174 PRK10762 D-ribose transporter 99.6 2.5E-15 5.5E-20 145.6 11.0 84 12-95 140-228 (501)
175 PRK09700 D-allose transporter 99.6 2.8E-15 6.1E-20 145.4 11.3 83 13-95 145-232 (510)
176 TIGR03269 met_CoM_red_A2 methy 99.6 3.4E-15 7.4E-20 145.1 11.7 76 12-87 426-507 (520)
177 PRK14238 phosphate transporter 99.6 3.9E-15 8.4E-20 133.9 11.2 74 13-87 167-245 (271)
178 PRK11247 ssuB aliphatic sulfon 99.6 3E-15 6.5E-20 134.3 10.4 76 13-88 133-214 (257)
179 cd03213 ABCG_EPDR ABCG transpo 99.6 3.4E-15 7.5E-20 127.9 10.1 75 13-87 111-191 (194)
180 PRK14236 phosphate transporter 99.6 4.3E-15 9.3E-20 133.5 11.2 75 12-87 167-246 (272)
181 cd03234 ABCG_White The White s 99.6 3E-15 6.5E-20 130.5 9.9 76 12-87 142-223 (226)
182 PRK11288 araG L-arabinose tran 99.6 3.1E-15 6.8E-20 145.0 10.9 79 12-90 395-478 (501)
183 PRK15134 microcin C ABC transp 99.6 3.4E-15 7.4E-20 145.6 11.2 75 13-87 425-505 (529)
184 PRK11248 tauB taurine transpor 99.6 3.7E-15 8.1E-20 133.0 10.6 76 13-88 128-211 (255)
185 PRK14261 phosphate ABC transpo 99.6 5.3E-15 1.1E-19 131.0 11.4 74 13-87 149-227 (253)
186 cd03253 ABCC_ATM1_transporter 99.6 5E-15 1.1E-19 129.3 11.1 74 12-87 136-214 (236)
187 PRK15439 autoinducer 2 ABC tra 99.6 3.5E-15 7.5E-20 145.2 11.2 84 12-95 139-227 (510)
188 PRK13648 cbiO cobalt transport 99.6 3.9E-15 8.5E-20 133.4 10.6 74 13-87 142-221 (269)
189 TIGR02633 xylG D-xylose ABC tr 99.6 3.6E-15 7.8E-20 144.2 11.1 83 13-95 141-228 (500)
190 PRK14251 phosphate ABC transpo 99.6 5.6E-15 1.2E-19 130.5 11.3 74 13-87 147-225 (251)
191 PRK13640 cbiO cobalt transport 99.6 5.1E-15 1.1E-19 134.0 11.1 74 13-87 143-222 (282)
192 PRK14275 phosphate ABC transpo 99.6 5.9E-15 1.3E-19 134.0 11.6 75 12-87 181-260 (286)
193 PRK10762 D-ribose transporter 99.6 4.1E-15 8.8E-20 144.1 11.1 82 11-92 393-479 (501)
194 PRK15134 microcin C ABC transp 99.6 4.4E-15 9.5E-20 144.8 11.4 82 13-94 156-243 (529)
195 PRK09452 potA putrescine/sperm 99.6 5.5E-15 1.2E-19 139.8 11.7 79 14-92 145-229 (375)
196 PRK15439 autoinducer 2 ABC tra 99.6 2.7E-15 6E-20 145.9 9.9 78 11-88 401-483 (510)
197 PRK10982 galactose/methyl gala 99.6 4.1E-15 8.9E-20 143.7 11.0 83 13-95 134-221 (491)
198 PRK11607 potG putrescine trans 99.6 5.3E-15 1.1E-19 140.0 11.6 83 12-94 148-236 (377)
199 cd03232 ABC_PDR_domain2 The pl 99.6 4.2E-15 9E-20 127.1 9.8 76 13-88 108-190 (192)
200 PRK15056 manganese/iron transp 99.6 5E-15 1.1E-19 133.1 10.7 74 14-88 143-221 (272)
201 PRK11629 lolD lipoprotein tran 99.6 4.9E-15 1.1E-19 129.7 10.3 75 13-88 145-225 (233)
202 PRK10419 nikE nickel transport 99.6 5.3E-15 1.1E-19 132.8 10.8 76 12-87 150-231 (268)
203 COG1120 FepC ABC-type cobalami 99.6 9E-15 1.9E-19 132.4 12.2 75 14-88 139-219 (258)
204 cd03245 ABCC_bacteriocin_expor 99.6 4E-15 8.7E-20 128.6 9.5 73 13-87 140-217 (220)
205 PRK10261 glutathione transport 99.6 4.9E-15 1.1E-19 147.8 11.5 76 13-88 463-544 (623)
206 PRK10982 galactose/methyl gala 99.6 3.6E-15 7.8E-20 144.0 10.0 76 13-88 391-471 (491)
207 TIGR02633 xylG D-xylose ABC tr 99.6 4.1E-15 8.8E-20 143.8 10.4 76 13-88 403-483 (500)
208 PRK13642 cbiO cobalt transport 99.6 6.4E-15 1.4E-19 132.8 11.0 74 13-87 140-219 (277)
209 PRK10261 glutathione transport 99.6 4.5E-15 9.8E-20 148.0 10.9 77 13-89 168-250 (623)
210 PRK09700 D-allose transporter 99.6 4.7E-15 1E-19 143.8 10.5 76 13-88 409-489 (510)
211 PRK13547 hmuV hemin importer A 99.6 7.4E-15 1.6E-19 132.8 11.1 75 13-87 145-234 (272)
212 PRK14263 phosphate ABC transpo 99.6 8.8E-15 1.9E-19 131.1 11.4 69 13-82 149-222 (261)
213 TIGR03269 met_CoM_red_A2 methy 99.6 6.9E-15 1.5E-19 143.0 11.5 82 13-94 168-255 (520)
214 cd03228 ABCC_MRP_Like The MRP 99.6 5.2E-15 1.1E-19 124.1 9.1 70 14-85 97-171 (171)
215 PRK14255 phosphate ABC transpo 99.6 1E-14 2.2E-19 128.9 11.4 74 13-87 148-226 (252)
216 PRK13632 cbiO cobalt transport 99.6 8E-15 1.7E-19 131.7 10.5 75 12-87 141-221 (271)
217 PRK13545 tagH teichoic acids e 99.6 9.4E-15 2E-19 143.8 11.8 80 13-92 143-227 (549)
218 PRK14237 phosphate transporter 99.6 1.1E-14 2.5E-19 130.4 11.3 74 13-87 163-241 (267)
219 PRK14265 phosphate ABC transpo 99.6 1.1E-14 2.5E-19 131.2 11.4 70 14-84 162-236 (274)
220 cd03247 ABCC_cytochrome_bd The 99.6 9.5E-15 2.1E-19 123.2 10.0 72 14-87 99-175 (178)
221 PRK14260 phosphate ABC transpo 99.6 1.2E-14 2.6E-19 129.4 11.1 70 13-83 150-224 (259)
222 cd03238 ABC_UvrA The excision 99.6 9.4E-15 2E-19 125.0 9.9 75 12-87 86-167 (176)
223 PRK14246 phosphate ABC transpo 99.6 1.4E-14 2.9E-19 129.6 11.3 76 11-87 151-231 (257)
224 PRK14266 phosphate ABC transpo 99.6 1.3E-14 2.9E-19 128.0 11.1 75 12-87 145-224 (250)
225 PRK11288 araG L-arabinose tran 99.6 9E-15 1.9E-19 141.8 10.4 79 12-90 139-222 (501)
226 PRK14271 phosphate ABC transpo 99.6 1.8E-14 3.9E-19 130.1 11.5 74 13-87 163-241 (276)
227 PRK09544 znuC high-affinity zi 99.6 1.1E-14 2.5E-19 129.9 10.0 76 12-88 119-200 (251)
228 PRK14252 phosphate ABC transpo 99.6 2.1E-14 4.5E-19 128.3 11.6 75 12-87 160-239 (265)
229 PRK14257 phosphate ABC transpo 99.6 1.6E-14 3.6E-19 134.2 11.2 75 12-87 224-303 (329)
230 cd03369 ABCC_NFT1 Domain 2 of 99.6 1.8E-14 4E-19 123.8 10.2 73 13-87 125-202 (207)
231 cd03270 ABC_UvrA_I The excisio 99.6 1.9E-14 4.2E-19 126.5 10.0 75 13-88 137-224 (226)
232 PRK15177 Vi polysaccharide exp 99.6 3E-14 6.4E-19 124.1 11.0 75 12-87 103-182 (213)
233 cd03248 ABCC_TAP TAP, the Tran 99.6 1.5E-14 3.3E-19 125.7 9.1 72 13-86 150-226 (226)
234 PRK14254 phosphate ABC transpo 99.5 3.1E-14 6.7E-19 129.3 11.3 74 13-87 180-259 (285)
235 cd03233 ABC_PDR_domain1 The pl 99.5 2.6E-14 5.5E-19 123.3 10.2 75 13-87 118-199 (202)
236 cd03288 ABCC_SUR2 The SUR doma 99.5 2.3E-14 4.9E-19 127.7 10.0 75 13-89 156-235 (257)
237 cd03289 ABCC_CFTR2 The CFTR su 99.5 2.9E-14 6.4E-19 129.5 10.7 72 14-87 139-215 (275)
238 cd03244 ABCC_MRP_domain2 Domai 99.5 2.5E-14 5.4E-19 123.8 9.8 75 12-88 138-217 (221)
239 cd03237 ABC_RNaseL_inhibitor_d 99.5 2.7E-14 5.9E-19 127.4 9.9 73 13-85 115-193 (246)
240 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 3.2E-14 6.9E-19 117.0 9.2 69 14-85 71-144 (144)
241 PRK14264 phosphate ABC transpo 99.5 4.6E-14 1E-18 129.3 11.2 74 13-87 200-279 (305)
242 cd03222 ABC_RNaseL_inhibitor T 99.5 4E-14 8.6E-19 121.2 9.9 73 14-86 72-150 (177)
243 TIGR02982 heterocyst_DevA ABC 99.5 4.5E-14 9.7E-19 122.6 10.1 73 13-86 141-219 (220)
244 cd00267 ABC_ATPase ABC (ATP-bi 99.5 5.6E-14 1.2E-18 115.9 9.8 72 14-85 81-157 (157)
245 COG1123 ATPase components of v 99.5 3.5E-14 7.6E-19 139.4 9.7 75 14-88 430-510 (539)
246 COG1116 TauB ABC-type nitrate/ 99.5 3.7E-14 8.1E-19 127.4 8.9 71 14-84 131-207 (248)
247 PRK13543 cytochrome c biogenes 99.5 4.7E-14 1E-18 122.4 9.2 71 13-83 137-212 (214)
248 PLN03211 ABC transporter G-25; 99.5 3.9E-14 8.4E-19 142.6 9.9 79 14-92 207-291 (659)
249 PRK10938 putative molybdenum t 99.5 3.9E-14 8.5E-19 136.7 8.6 76 13-88 401-483 (490)
250 TIGR02324 CP_lyasePhnL phospho 99.5 5.9E-14 1.3E-18 121.8 8.9 69 13-81 149-222 (224)
251 COG3840 ThiQ ABC-type thiamine 99.5 6.1E-14 1.3E-18 122.1 8.6 80 15-94 131-216 (231)
252 TIGR03608 L_ocin_972_ABC putat 99.5 7E-14 1.5E-18 119.5 8.8 69 12-81 133-206 (206)
253 COG1118 CysA ABC-type sulfate/ 99.5 1E-13 2.2E-18 128.2 10.1 74 14-87 138-217 (345)
254 PRK15064 ABC transporter ATP-b 99.5 8.9E-14 1.9E-18 135.7 10.3 74 11-87 436-514 (530)
255 cd03250 ABCC_MRP_domain1 Domai 99.5 8.5E-14 1.9E-18 119.4 9.0 73 12-85 126-204 (204)
256 COG1137 YhbG ABC-type (unclass 99.5 1E-13 2.2E-18 122.1 9.2 77 11-87 137-218 (243)
257 PRK10247 putative ABC transpor 99.5 9.1E-14 2E-18 121.4 8.8 74 12-86 136-217 (225)
258 cd03290 ABCC_SUR1_N The SUR do 99.5 1E-13 2.2E-18 120.0 8.9 74 11-85 138-218 (218)
259 PRK15064 ABC transporter ATP-b 99.5 1.4E-13 3.1E-18 134.2 10.7 73 12-87 154-231 (530)
260 cd03291 ABCC_CFTR1 The CFTR su 99.5 2.9E-13 6.3E-18 123.4 11.6 73 13-87 159-237 (282)
261 cd03236 ABC_RNaseL_inhibitor_d 99.5 2.5E-13 5.4E-18 122.0 9.7 76 11-87 137-217 (255)
262 TIGR01842 type_I_sec_PrtD type 99.5 3.5E-13 7.5E-18 131.8 11.3 73 14-87 455-532 (544)
263 PRK10636 putative ABC transpor 99.5 3.5E-13 7.5E-18 135.0 11.3 73 13-88 430-507 (638)
264 PRK11819 putative ABC transpor 99.4 3E-13 6.6E-18 133.0 10.2 74 13-89 163-241 (556)
265 COG1129 MglA ABC-type sugar tr 99.4 3.4E-13 7.3E-18 131.6 10.4 91 3-93 393-486 (500)
266 TIGR00955 3a01204 The Eye Pigm 99.4 2.5E-13 5.5E-18 135.4 9.6 81 14-94 167-253 (617)
267 cd03271 ABC_UvrA_II The excisi 99.4 5.7E-13 1.2E-17 120.7 10.6 75 13-88 169-257 (261)
268 cd03223 ABCD_peroxisomal_ALDP 99.4 4.2E-13 9.2E-18 112.5 9.0 68 13-84 91-163 (166)
269 TIGR01192 chvA glucan exporter 99.4 5.8E-13 1.3E-17 131.8 11.3 72 14-87 472-548 (585)
270 PRK13538 cytochrome c biogenes 99.4 3.9E-13 8.5E-18 115.6 8.6 69 13-81 129-202 (204)
271 cd03279 ABC_sbcCD SbcCD and ot 99.4 5.1E-13 1.1E-17 116.1 9.4 74 13-86 123-211 (213)
272 COG1136 SalX ABC-type antimicr 99.4 6.1E-13 1.3E-17 118.5 9.7 73 13-86 142-220 (226)
273 COG4172 ABC-type uncharacteriz 99.4 3E-13 6.4E-18 129.2 8.1 81 14-94 427-513 (534)
274 TIGR03375 type_I_sec_LssB type 99.4 9.9E-13 2.1E-17 132.1 11.8 72 14-87 602-678 (694)
275 PRK10789 putative multidrug tr 99.4 9E-13 1.9E-17 129.8 11.1 72 14-87 452-528 (569)
276 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 9.1E-13 2E-17 129.4 10.9 86 12-100 442-534 (552)
277 cd03231 ABC_CcmA_heme_exporter 99.4 6.2E-13 1.3E-17 114.3 8.5 69 13-81 125-198 (201)
278 PRK11819 putative ABC transpor 99.4 9.7E-13 2.1E-17 129.5 11.0 86 12-100 444-536 (556)
279 PRK11147 ABC transporter ATPas 99.4 8E-13 1.7E-17 132.1 10.4 74 13-89 156-234 (635)
280 TIGR01846 type_I_sec_HlyB type 99.4 1.1E-12 2.4E-17 131.9 11.4 72 14-87 594-670 (694)
281 PRK11174 cysteine/glutathione 99.4 1.2E-12 2.6E-17 128.8 11.1 72 14-87 486-562 (588)
282 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.1E-12 2.3E-17 132.1 11.0 70 14-87 616-690 (710)
283 COG0411 LivG ABC-type branched 99.4 4.8E-13 1E-17 120.1 7.6 64 24-87 165-229 (250)
284 COG3638 ABC-type phosphate/pho 99.4 6.5E-13 1.4E-17 119.1 8.3 73 15-87 149-227 (258)
285 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 1.2E-12 2.7E-17 131.3 11.2 69 15-87 590-663 (686)
286 PRK10636 putative ABC transpor 99.4 9E-13 2E-17 132.0 10.1 77 12-91 148-229 (638)
287 COG4987 CydC ABC-type transpor 99.4 7.6E-13 1.6E-17 129.4 9.2 71 15-87 476-551 (573)
288 PRK13409 putative ATPase RIL; 99.4 8.6E-13 1.9E-17 131.4 9.7 74 13-87 453-532 (590)
289 PRK11176 lipid transporter ATP 99.4 1.4E-12 3.1E-17 127.9 10.9 72 14-87 481-557 (582)
290 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.2E-12 2.5E-17 128.7 10.2 74 13-89 161-239 (552)
291 PRK10790 putative multidrug tr 99.4 1.6E-12 3.6E-17 128.0 11.3 72 14-87 477-553 (592)
292 PRK13539 cytochrome c biogenes 99.4 8.8E-13 1.9E-17 113.8 8.2 68 13-82 127-199 (207)
293 PRK11160 cysteine/glutathione 99.4 1.5E-12 3.3E-17 128.4 10.9 72 14-87 476-552 (574)
294 COG4172 ABC-type uncharacteriz 99.4 7.6E-13 1.7E-17 126.4 8.1 101 14-114 158-269 (534)
295 COG2274 SunT ABC-type bacterio 99.4 1.3E-12 2.9E-17 132.5 10.1 71 15-87 611-686 (709)
296 COG1132 MdlB ABC-type multidru 99.4 2.1E-12 4.5E-17 126.8 10.9 71 15-87 467-542 (567)
297 PRK13409 putative ATPase RIL; 99.4 1.4E-12 3.1E-17 129.8 9.9 74 10-84 209-287 (590)
298 COG1117 PstB ABC-type phosphat 99.4 1.2E-12 2.5E-17 116.4 8.2 75 12-87 148-227 (253)
299 COG1129 MglA ABC-type sugar tr 99.4 2E-12 4.4E-17 126.2 10.6 77 15-91 147-228 (500)
300 PRK13657 cyclic beta-1,2-gluca 99.4 2.6E-12 5.6E-17 126.7 11.3 72 14-87 472-548 (588)
301 COG3839 MalK ABC-type sugar tr 99.4 1.6E-12 3.4E-17 121.8 9.1 75 13-87 133-213 (338)
302 TIGR01193 bacteriocin_ABC ABC- 99.4 2.6E-12 5.6E-17 129.4 11.1 71 14-87 612-687 (708)
303 COG3842 PotA ABC-type spermidi 99.4 9.3E-13 2E-17 124.0 7.2 76 13-88 136-217 (352)
304 PLN03073 ABC transporter F fam 99.4 2.7E-12 5.9E-17 130.5 10.8 73 13-88 627-704 (718)
305 COG4608 AppF ABC-type oligopep 99.4 1.1E-12 2.4E-17 119.2 7.1 74 14-87 110-189 (268)
306 PRK10535 macrolide transporter 99.4 3.5E-12 7.6E-17 128.0 11.1 80 13-93 144-228 (648)
307 PLN03073 ABC transporter F fam 99.4 3.2E-12 7E-17 129.9 11.0 78 11-91 342-424 (718)
308 TIGR01166 cbiO cobalt transpor 99.4 1.1E-12 2.4E-17 111.3 6.3 59 13-71 127-190 (190)
309 COG4598 HisP ABC-type histidin 99.4 1.8E-12 3.8E-17 113.2 7.6 73 15-87 154-231 (256)
310 TIGR01194 cyc_pep_trnsptr cycl 99.4 3.6E-12 7.7E-17 125.3 10.8 74 14-88 471-550 (555)
311 PRK11147 ABC transporter ATPas 99.3 3E-12 6.5E-17 128.0 10.1 76 13-91 440-521 (635)
312 COG3845 ABC-type uncharacteriz 99.3 3E-12 6.5E-17 124.1 9.4 77 15-91 142-223 (501)
313 TIGR00958 3a01208 Conjugate Tr 99.3 4.3E-12 9.3E-17 128.3 10.5 70 14-87 618-692 (711)
314 TIGR02204 MsbA_rel ABC transpo 99.3 5.6E-12 1.2E-16 123.5 10.8 72 14-87 477-553 (576)
315 COG4988 CydD ABC-type transpor 99.3 3.8E-12 8.3E-17 125.3 9.4 72 14-87 457-533 (559)
316 PLN03140 ABC transporter G fam 99.3 4E-12 8.8E-17 137.5 9.6 77 14-90 1020-1103(1470)
317 TIGR02203 MsbA_lipidA lipid A 99.3 8.4E-12 1.8E-16 121.9 11.0 72 14-87 470-546 (571)
318 PRK10522 multidrug transporter 99.3 7.3E-12 1.6E-16 122.8 10.4 76 13-89 449-530 (547)
319 TIGR00956 3a01205 Pleiotropic 99.3 4.4E-12 9.6E-17 136.7 9.4 76 14-89 210-292 (1394)
320 KOG0055|consensus 99.3 6.4E-12 1.4E-16 132.2 9.9 73 14-88 490-567 (1228)
321 PRK00349 uvrA excinuclease ABC 99.3 8.6E-12 1.9E-16 130.0 10.7 86 9-95 485-583 (943)
322 TIGR00630 uvra excinuclease AB 99.3 9.9E-12 2.1E-16 129.3 10.7 78 13-91 487-577 (924)
323 COG2884 FtsE Predicted ATPase 99.3 1.2E-11 2.6E-16 108.3 9.3 73 15-87 139-216 (223)
324 TIGR00956 3a01205 Pleiotropic 99.3 7.6E-12 1.6E-16 134.9 9.5 80 13-92 901-988 (1394)
325 PRK00635 excinuclease ABC subu 99.3 1.4E-11 3.1E-16 134.3 11.4 68 14-82 810-885 (1809)
326 PTZ00265 multidrug resistance 99.3 1.3E-11 2.9E-16 133.6 11.0 72 13-85 579-656 (1466)
327 TIGR01189 ccmA heme ABC export 99.3 8.8E-12 1.9E-16 106.6 7.3 65 13-79 127-196 (198)
328 COG0410 LivF ABC-type branched 99.3 3.2E-11 6.9E-16 107.7 10.8 73 15-87 138-216 (237)
329 PRK00349 uvrA excinuclease ABC 99.3 2.6E-11 5.6E-16 126.5 11.4 69 13-82 830-906 (943)
330 PLN03140 ABC transporter G fam 99.3 1.2E-11 2.7E-16 133.8 9.1 77 14-90 337-420 (1470)
331 cd03276 ABC_SMC6_euk Eukaryoti 99.3 9.9E-12 2.1E-16 107.6 6.8 72 13-85 109-192 (198)
332 PRK13541 cytochrome c biogenes 99.3 1E-11 2.2E-16 106.1 6.7 66 12-78 122-192 (195)
333 PRK13540 cytochrome c biogenes 99.2 1.1E-11 2.5E-16 106.2 6.7 65 13-78 127-196 (200)
334 COG1119 ModF ABC-type molybden 99.2 1.9E-11 4E-16 110.1 8.2 74 15-88 173-253 (257)
335 cd03272 ABC_SMC3_euk Eukaryoti 99.2 3.2E-11 7E-16 105.7 9.2 68 13-82 158-234 (243)
336 cd03278 ABC_SMC_barmotin Barmo 99.2 3E-11 6.5E-16 104.5 8.7 71 11-83 111-190 (197)
337 COG4559 ABC-type hemin transpo 99.2 4.5E-11 9.7E-16 106.3 9.7 74 14-87 136-220 (259)
338 PLN03232 ABC transporter C fam 99.2 4.1E-11 8.9E-16 130.1 11.3 72 14-87 1372-1448(1495)
339 COG4107 PhnK ABC-type phosphon 99.2 2.8E-11 6.1E-16 105.4 8.0 76 13-88 151-232 (258)
340 TIGR00630 uvra excinuclease AB 99.2 4.6E-11 9.9E-16 124.4 11.1 68 13-81 828-903 (924)
341 cd03240 ABC_Rad50 The catalyti 99.2 4.1E-11 8.9E-16 104.1 8.7 70 13-83 115-197 (204)
342 PRK00635 excinuclease ABC subu 99.2 5.2E-11 1.1E-15 130.0 11.4 79 10-89 473-564 (1809)
343 COG4148 ModC ABC-type molybdat 99.2 2.7E-11 5.8E-16 111.4 7.5 80 15-94 130-215 (352)
344 cd03277 ABC_SMC5_euk Eukaryoti 99.2 3.2E-11 6.9E-16 105.7 7.5 78 8-85 121-211 (213)
345 PLN03130 ABC transporter C fam 99.2 6.7E-11 1.5E-15 129.2 11.4 81 14-96 1375-1460(1622)
346 TIGR00957 MRP_assoc_pro multi 99.2 7.5E-11 1.6E-15 128.2 11.4 72 14-87 1422-1498(1522)
347 cd03275 ABC_SMC1_euk Eukaryoti 99.2 6.1E-11 1.3E-15 105.4 8.6 71 12-83 154-233 (247)
348 COG4525 TauB ABC-type taurine 99.2 5.5E-11 1.2E-15 104.9 7.9 75 14-88 133-215 (259)
349 COG4161 ArtP ABC-type arginine 99.2 4.8E-11 1E-15 102.9 7.4 77 12-88 140-221 (242)
350 cd03274 ABC_SMC4_euk Eukaryoti 99.2 7.2E-11 1.6E-15 103.3 8.5 69 13-83 127-204 (212)
351 COG1134 TagH ABC-type polysacc 99.2 2.3E-10 5E-15 102.9 11.2 73 15-87 149-226 (249)
352 KOG0061|consensus 99.2 4.4E-11 9.5E-16 119.8 6.9 74 15-88 172-251 (613)
353 PTZ00265 multidrug resistance 99.2 1.1E-10 2.5E-15 126.4 10.5 69 14-83 1359-1433(1466)
354 TIGR01271 CFTR_protein cystic 99.2 1.6E-10 3.5E-15 125.4 11.5 72 14-87 1354-1430(1490)
355 cd03280 ABC_MutS2 MutS2 homolo 99.2 1.1E-10 2.3E-15 100.6 8.1 73 14-87 92-169 (200)
356 TIGR01271 CFTR_protein cystic 99.1 1.9E-10 4E-15 125.0 11.4 74 13-88 548-627 (1490)
357 PTZ00243 ABC transporter; Prov 99.1 2.3E-10 4.9E-15 124.8 11.3 72 14-87 1446-1523(1560)
358 TIGR00957 MRP_assoc_pro multi 99.1 1.9E-10 4.2E-15 125.1 10.5 75 13-88 760-841 (1522)
359 COG1101 PhnK ABC-type uncharac 99.1 1.8E-10 3.8E-15 102.8 8.2 73 15-87 150-228 (263)
360 TIGR02857 CydD thiol reductant 99.1 1.5E-10 3.2E-15 112.6 8.4 67 13-81 458-529 (529)
361 PTZ00243 ABC transporter; Prov 99.1 3.1E-10 6.8E-15 123.7 11.5 78 14-92 783-865 (1560)
362 TIGR00954 3a01203 Peroxysomal 99.1 2.2E-10 4.7E-15 115.4 9.0 67 13-83 582-653 (659)
363 cd03273 ABC_SMC2_euk Eukaryoti 99.1 2.7E-10 5.9E-15 101.2 8.5 68 13-82 166-242 (251)
364 PLN03232 ABC transporter C fam 99.1 4.9E-10 1.1E-14 121.8 10.9 77 14-92 741-823 (1495)
365 COG4674 Uncharacterized ABC-ty 99.1 6.7E-10 1.5E-14 98.0 9.2 71 15-86 149-224 (249)
366 cd03239 ABC_SMC_head The struc 99.1 9.3E-10 2E-14 94.0 9.7 71 12-83 93-172 (178)
367 cd03241 ABC_RecN RecN ATPase i 99.1 5E-10 1.1E-14 101.3 8.4 70 14-85 171-249 (276)
368 COG0488 Uup ATPase components 99.0 4.3E-10 9.4E-15 111.1 8.1 74 15-91 155-233 (530)
369 PLN03130 ABC transporter C fam 99.0 1.1E-09 2.5E-14 119.8 11.2 79 14-94 741-825 (1622)
370 KOG0058|consensus 99.0 8.8E-10 1.9E-14 111.0 8.4 72 14-87 605-681 (716)
371 COG4181 Predicted ABC-type tra 99.0 1.2E-09 2.7E-14 94.8 8.0 71 16-87 149-225 (228)
372 KOG0057|consensus 99.0 1.7E-09 3.7E-14 106.4 9.2 72 14-87 488-564 (591)
373 COG4604 CeuD ABC-type enteroch 99.0 1.3E-09 2.7E-14 96.4 7.5 75 13-87 135-215 (252)
374 cd03227 ABC_Class2 ABC-type Cl 99.0 2.8E-09 6.1E-14 89.0 9.0 57 26-83 99-155 (162)
375 TIGR00618 sbcc exonuclease Sbc 98.9 2.5E-09 5.5E-14 112.6 9.2 73 12-84 949-1036(1042)
376 KOG0055|consensus 98.9 2.9E-09 6.4E-14 112.5 9.2 71 15-87 1128-1203(1228)
377 COG4618 ArpD ABC-type protease 98.9 2.9E-09 6.3E-14 104.2 8.4 71 15-86 474-549 (580)
378 COG4138 BtuD ABC-type cobalami 98.9 1.4E-09 3E-14 94.9 5.2 63 25-87 149-211 (248)
379 COG3845 ABC-type uncharacteriz 98.9 4E-09 8.6E-14 102.6 8.8 72 17-88 407-483 (501)
380 COG4619 ABC-type uncharacteriz 98.9 3.4E-09 7.3E-14 91.9 7.1 85 3-87 123-213 (223)
381 TIGR00634 recN DNA repair prot 98.9 3.5E-09 7.6E-14 104.9 8.3 71 13-85 440-519 (563)
382 COG0396 sufC Cysteine desulfur 98.9 1E-08 2.3E-13 91.9 10.4 73 15-87 146-224 (251)
383 KOG0927|consensus 98.8 7.5E-09 1.6E-13 101.9 5.7 89 4-94 212-305 (614)
384 TIGR02868 CydC thiol reductant 98.8 1.1E-08 2.3E-13 99.7 6.8 54 14-68 471-529 (529)
385 PRK03918 chromosome segregatio 98.8 2.4E-08 5.3E-13 102.5 9.4 70 13-83 788-868 (880)
386 cd03285 ABC_MSH2_euk MutS2 hom 98.8 1.4E-08 2.9E-13 89.7 6.4 61 24-87 107-171 (222)
387 PHA02562 46 endonuclease subun 98.8 9.8E-09 2.1E-13 100.3 6.0 71 13-86 468-555 (562)
388 KOG0065|consensus 98.8 6.6E-09 1.4E-13 110.3 5.0 73 16-88 932-1012(1391)
389 COG0488 Uup ATPase components 98.7 3.3E-08 7.2E-13 97.8 9.2 71 13-87 439-514 (530)
390 cd03243 ABC_MutS_homologs The 98.7 3E-08 6.5E-13 85.4 7.7 63 24-87 106-169 (202)
391 COG0178 UvrA Excinuclease ATPa 98.7 3.3E-08 7.2E-13 101.1 9.0 95 7-143 818-919 (935)
392 cd03242 ABC_RecF RecF is a rec 98.7 1.7E-08 3.7E-13 91.0 5.7 69 14-86 184-269 (270)
393 PRK10869 recombination and rep 98.7 7.1E-08 1.5E-12 95.8 10.4 71 13-85 430-509 (553)
394 cd03283 ABC_MutS-like MutS-lik 98.7 8.2E-08 1.8E-12 83.4 8.3 57 26-82 105-164 (199)
395 COG5265 ATM1 ABC-type transpor 98.6 7.3E-08 1.6E-12 92.9 7.4 73 14-88 400-477 (497)
396 COG4170 SapD ABC-type antimicr 98.6 7.5E-08 1.6E-12 86.3 6.7 65 24-88 174-239 (330)
397 TIGR00606 rad50 rad50. This fa 98.6 8E-08 1.7E-12 103.6 7.5 65 12-76 1198-1278(1311)
398 PRK10246 exonuclease subunit S 98.6 1.2E-07 2.7E-12 100.2 8.8 72 12-83 948-1032(1047)
399 smart00534 MUTSac ATPase domai 98.6 1.7E-07 3.6E-12 80.0 7.5 61 24-85 76-138 (185)
400 PRK01156 chromosome segregatio 98.6 1.7E-07 3.6E-12 97.1 8.8 71 11-82 799-883 (895)
401 KOG0062|consensus 98.6 1.5E-07 3.2E-12 92.4 7.4 70 15-87 484-558 (582)
402 PRK00064 recF recombination pr 98.5 1.8E-07 3.9E-12 88.1 7.4 72 12-86 272-359 (361)
403 COG4167 SapF ABC-type antimicr 98.5 3.2E-07 6.9E-12 80.8 8.1 73 15-87 151-229 (267)
404 KOG0054|consensus 98.5 3.2E-07 7E-12 98.8 9.4 72 15-87 645-721 (1381)
405 KOG0054|consensus 98.5 3.1E-07 6.8E-12 98.9 8.6 94 3-98 1262-1363(1381)
406 TIGR02168 SMC_prok_B chromosom 98.5 2.1E-07 4.5E-12 96.7 6.7 69 12-82 1088-1165(1179)
407 cd03282 ABC_MSH4_euk MutS4 hom 98.4 8.9E-07 1.9E-11 77.4 8.1 53 24-76 106-159 (204)
408 KOG0927|consensus 98.4 2.8E-07 6E-12 91.0 4.9 70 15-87 511-585 (614)
409 KOG2355|consensus 98.4 4.8E-07 1E-11 80.9 5.3 74 14-87 148-227 (291)
410 KOG0056|consensus 98.3 6.3E-07 1.4E-11 88.2 5.9 74 12-87 673-751 (790)
411 KOG0062|consensus 98.3 2.6E-07 5.6E-12 90.8 3.0 83 6-91 193-278 (582)
412 PRK02224 chromosome segregatio 98.3 9.5E-07 2.1E-11 91.1 7.0 57 28-85 813-870 (880)
413 COG0178 UvrA Excinuclease ATPa 98.3 4.1E-06 9E-11 86.1 10.5 95 9-144 479-578 (935)
414 COG4133 CcmA ABC-type transpor 98.2 2.4E-06 5.1E-11 75.0 6.6 57 15-71 132-193 (209)
415 TIGR02169 SMC_prok_A chromosom 98.2 3.6E-06 7.8E-11 88.0 8.5 70 12-83 1073-1151(1164)
416 cd01124 KaiC KaiC is a circadi 98.2 2.1E-06 4.6E-11 71.5 5.0 60 24-83 93-164 (187)
417 PF13732 DUF4162: Domain of un 98.2 3.3E-05 7.2E-10 57.4 10.8 82 136-230 1-83 (84)
418 cd03284 ABC_MutS1 MutS1 homolo 98.2 4.2E-06 9.1E-11 73.5 6.4 61 24-87 107-171 (216)
419 TIGR00611 recf recF protein. A 98.1 4.2E-06 9.2E-11 79.2 6.0 59 11-72 273-345 (365)
420 COG4136 ABC-type uncharacteriz 98.1 2.6E-06 5.6E-11 73.1 3.9 66 15-81 136-207 (213)
421 COG4778 PhnL ABC-type phosphon 98.1 4E-06 8.6E-11 73.2 5.0 69 15-83 154-227 (235)
422 cd03281 ABC_MSH5_euk MutS5 hom 98.1 1.5E-05 3.2E-10 69.9 8.4 51 24-74 106-160 (213)
423 PRK00409 recombination and DNA 98.1 1.1E-05 2.4E-10 83.4 8.4 68 15-82 392-464 (782)
424 COG4615 PvdE ABC-type sideroph 98.0 3E-06 6.5E-11 81.7 3.5 78 12-90 447-530 (546)
425 COG1245 Predicted ATPase, RNas 98.0 1.7E-05 3.6E-10 77.7 7.8 75 9-83 209-288 (591)
426 PRK13830 conjugal transfer pro 98.0 1.6E-05 3.5E-10 82.4 7.7 64 24-87 650-723 (818)
427 PRK14079 recF recombination pr 97.9 2.7E-05 5.8E-10 73.3 6.7 69 12-87 262-344 (349)
428 cd03286 ABC_MSH6_euk MutS6 hom 97.9 6.2E-05 1.4E-09 66.6 8.2 52 24-75 107-160 (218)
429 TIGR02858 spore_III_AA stage I 97.8 7.1E-05 1.5E-09 68.4 7.4 63 16-85 184-259 (270)
430 PF13304 AAA_21: AAA domain; P 97.8 8.2E-05 1.8E-09 61.4 7.1 56 15-70 238-301 (303)
431 KOG0066|consensus 97.7 4.2E-05 9E-10 74.9 5.3 68 16-86 707-779 (807)
432 TIGR01069 mutS2 MutS2 family p 97.7 0.00011 2.3E-09 76.1 8.6 50 24-73 400-450 (771)
433 PF02463 SMC_N: RecF/RecN/SMC 97.7 0.00024 5.2E-09 61.3 9.1 57 24-82 156-212 (220)
434 COG0419 SbcC ATPase involved i 97.7 0.00017 3.7E-09 75.5 9.5 56 27-83 842-897 (908)
435 TIGR02680 conserved hypothetic 97.6 8.8E-05 1.9E-09 80.8 6.5 54 12-68 1246-1316(1353)
436 COG1245 Predicted ATPase, RNas 97.6 0.00019 4.2E-09 70.4 7.7 68 15-82 457-530 (591)
437 PRK13695 putative NTPase; Prov 97.5 0.00019 4.1E-09 60.2 6.2 61 23-88 93-155 (174)
438 cd03287 ABC_MSH3_euk MutS3 hom 97.5 0.00042 9.2E-09 61.5 8.6 50 24-73 108-159 (222)
439 KOG0065|consensus 97.5 0.00024 5.2E-09 76.5 6.9 74 15-88 262-342 (1391)
440 PRK08533 flagellar accessory p 97.4 0.00016 3.6E-09 64.1 4.5 59 24-82 115-184 (230)
441 COG4178 ABC-type uncharacteriz 97.4 0.0004 8.6E-09 70.0 7.1 65 15-81 517-586 (604)
442 KOG0066|consensus 97.4 4.5E-05 9.7E-10 74.7 0.1 72 17-91 418-492 (807)
443 PRK07721 fliI flagellum-specif 97.2 0.00064 1.4E-08 66.2 6.7 53 34-88 273-334 (438)
444 PRK06067 flagellar accessory p 97.1 0.0011 2.4E-08 58.1 6.5 60 24-83 118-187 (234)
445 PRK13891 conjugal transfer pro 97.1 0.0013 2.7E-08 68.9 7.3 50 24-73 685-735 (852)
446 PTZ00132 GTP-binding nuclear p 97.0 0.001 2.2E-08 57.2 4.5 32 24-55 168-204 (215)
447 COG3910 Predicted ATPase [Gene 96.7 0.003 6.5E-08 56.0 5.4 61 24-84 144-204 (233)
448 PRK13873 conjugal transfer ATP 96.7 0.0029 6.4E-08 65.6 6.1 50 24-73 633-683 (811)
449 cd01120 RecA-like_NTPases RecA 96.6 0.0052 1.1E-07 48.8 5.8 49 23-71 82-140 (165)
450 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.0056 1.2E-07 53.2 5.0 59 24-82 105-177 (224)
451 PRK13898 type IV secretion sys 96.3 0.0087 1.9E-07 62.1 6.8 50 24-73 640-690 (800)
452 PF13558 SbcCD_C: Putative exo 96.0 0.0095 2.1E-07 45.5 4.2 28 26-53 63-90 (90)
453 KOG0059|consensus 96.0 0.011 2.3E-07 62.2 5.9 84 137-237 26-109 (885)
454 TIGR00152 dephospho-CoA kinase 96.0 0.0044 9.6E-08 52.6 2.5 66 18-85 64-134 (188)
455 PF13175 AAA_15: AAA ATPase do 95.9 0.014 3.1E-07 54.0 5.6 42 29-70 372-414 (415)
456 KOG0063|consensus 95.9 0.019 4E-07 56.5 6.3 73 11-83 213-288 (592)
457 KOG0060|consensus 95.8 0.015 3.2E-07 58.7 5.6 64 15-82 572-640 (659)
458 PRK05399 DNA mismatch repair p 95.3 0.03 6.5E-07 58.8 5.9 51 24-77 684-738 (854)
459 cd01125 repA Hexameric Replica 95.2 0.03 6.5E-07 49.3 4.9 47 24-71 109-162 (239)
460 COG2401 ABC-type ATPase fused 95.0 0.06 1.3E-06 53.0 6.6 64 24-87 523-588 (593)
461 PRK08699 DNA polymerase III su 95.0 0.031 6.7E-07 52.4 4.5 47 25-73 112-158 (325)
462 COG4637 Predicted ATPase [Gene 94.6 0.1 2.2E-06 49.5 6.9 60 24-84 288-347 (373)
463 TIGR02788 VirB11 P-type DNA tr 94.4 0.052 1.1E-06 50.1 4.5 51 24-82 216-266 (308)
464 KOG0063|consensus 94.4 0.036 7.9E-07 54.6 3.5 59 25-83 473-532 (592)
465 TIGR02655 circ_KaiC circadian 94.1 0.07 1.5E-06 52.4 5.0 62 21-82 115-190 (484)
466 PRK14088 dnaA chromosomal repl 93.7 0.097 2.1E-06 50.9 5.0 64 25-88 193-259 (440)
467 PRK09302 circadian clock prote 93.7 0.058 1.3E-06 52.9 3.5 60 23-82 127-200 (509)
468 TIGR03881 KaiC_arch_4 KaiC dom 93.6 0.12 2.7E-06 44.8 4.9 57 26-82 121-188 (229)
469 COG3044 Predicted ATPase of th 92.6 0.42 9.2E-06 47.0 7.4 105 24-141 336-453 (554)
470 PF00488 MutS_V: MutS domain V 92.3 0.65 1.4E-05 41.5 7.8 50 24-73 120-171 (235)
471 KOG0962|consensus 91.9 0.25 5.5E-06 53.8 5.4 50 24-73 1205-1259(1294)
472 PRK06793 fliI flagellum-specif 91.8 0.051 1.1E-06 53.1 0.1 59 24-88 244-302 (432)
473 COG1195 RecF Recombinational D 90.9 0.6 1.3E-05 44.8 6.3 59 24-86 300-361 (363)
474 PRK06893 DNA replication initi 90.6 1.2 2.6E-05 39.2 7.6 45 24-68 89-134 (229)
475 cd01128 rho_factor Transcripti 90.3 0.2 4.4E-06 45.3 2.5 64 19-87 143-212 (249)
476 TIGR00416 sms DNA repair prote 90.1 0.54 1.2E-05 46.1 5.5 62 24-85 168-247 (454)
477 TIGR01070 mutS1 DNA mismatch r 89.9 0.73 1.6E-05 48.6 6.6 49 24-72 669-719 (840)
478 PRK08181 transposase; Validate 89.8 1.8 3.9E-05 39.7 8.3 65 24-91 165-241 (269)
479 PF13166 AAA_13: AAA domain 89.8 0.75 1.6E-05 46.7 6.3 51 25-75 526-578 (712)
480 KOG0728|consensus 89.5 0.71 1.5E-05 43.1 5.4 74 24-120 238-325 (404)
481 PRK04296 thymidine kinase; Pro 88.9 1.5 3.2E-05 37.6 6.7 56 24-83 76-141 (190)
482 cd00561 CobA_CobO_BtuR ATP:cor 88.3 0.95 2.1E-05 38.5 5.0 64 19-83 88-154 (159)
483 PRK13764 ATPase; Provisional 87.1 1.3 2.7E-05 45.2 5.9 58 24-88 322-394 (602)
484 cd01131 PilT Pilus retraction 86.3 1 2.2E-05 38.8 4.1 51 24-82 72-122 (198)
485 KOG0064|consensus 85.9 0.54 1.2E-05 47.6 2.5 55 15-72 614-673 (728)
486 PTZ00454 26S protease regulato 85.8 1.1 2.4E-05 43.2 4.6 58 24-86 236-307 (398)
487 TIGR01026 fliI_yscN ATPase Fli 84.1 0.76 1.6E-05 45.0 2.6 51 36-88 282-339 (440)
488 cd01122 GP4d_helicase GP4d_hel 82.9 2.2 4.7E-05 37.8 4.9 60 24-83 138-228 (271)
489 PRK14087 dnaA chromosomal repl 82.4 7.7 0.00017 38.0 8.8 46 24-69 204-250 (450)
490 TIGR03185 DNA_S_dndD DNA sulfu 82.0 2.6 5.7E-05 42.9 5.6 44 25-72 574-618 (650)
491 PRK06921 hypothetical protein; 81.9 2.6 5.7E-05 38.3 5.0 49 24-72 175-230 (266)
492 cd01121 Sms Sms (bacterial rad 81.8 3.8 8.2E-05 39.3 6.3 62 24-85 156-235 (372)
493 TIGR00929 VirB4_CagE type IV s 80.1 3.6 7.8E-05 42.2 5.9 50 24-73 627-677 (785)
494 COG4559 ABC-type hemin transpo 77.5 1.9 4.1E-05 39.3 2.6 27 115-141 202-228 (259)
495 PTZ00361 26 proteosome regulat 77.3 3.5 7.7E-05 40.4 4.6 58 24-86 274-345 (438)
496 COG3593 Predicted ATP-dependen 76.9 5.5 0.00012 40.6 6.0 101 25-131 300-405 (581)
497 PRK07414 cob(I)yrinic acid a,c 75.9 6.6 0.00014 34.1 5.4 66 19-85 108-176 (178)
498 COG1120 FepC ABC-type cobalami 75.2 2.3 5E-05 39.0 2.5 29 113-141 198-226 (258)
499 cd00009 AAA The AAA+ (ATPases 74.6 9.4 0.0002 28.7 5.5 45 24-69 82-131 (151)
500 COG1196 Smc Chromosome segrega 74.5 4.2 9.1E-05 44.3 4.8 52 24-77 1086-1137(1163)
No 1
>KOG0059|consensus
Probab=99.96 E-value=8.4e-29 Score=254.82 Aligned_cols=180 Identities=39% Similarity=0.755 Sum_probs=156.8
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
+-.||.|+|+|+. +++|++++|||||+|+||.+|+.+|+++.+++++|+.||+|||+|+|+|.
T Consensus 696 ~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~Ea------------ 763 (885)
T KOG0059|consen 696 VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEA------------ 763 (885)
T ss_pred hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH------------
Confidence 4568889988887 89999999999999999999999999999999888899999999999888
Q ss_pred EeeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCC-CHHHHH
Q psy859 86 LRKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREG-DLDQLK 164 (247)
Q Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~-~~~~l~ 164 (247)
||||+|||++|+++|.|++++||.+||++|.+.+++.+. +.+.+.
T Consensus 764 ----------------------------------LCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~~~v~ 809 (885)
T KOG0059|consen 764 ----------------------------------LCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEVSEVE 809 (885)
T ss_pred ----------------------------------HhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCcccchHH
Confidence 899999999999999999999999999999999998652 224677
Q ss_pred HHHHhhccCceEEeeecCCEEEEEEcCC-CcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhcCCCCC
Q psy859 165 ERIRTEFKGRVEIKDEHKGLIHYQILDT-TFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGRGQRH 238 (247)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~~~~~ 238 (247)
..+...+| .+.....+...+.+.++.. ...++.+|..++..+...+ +++|++++++|||||+++++......
T Consensus 810 ~~~~~~~p-~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~-i~dyslsq~tLe~VFi~~a~~q~~~~ 882 (885)
T KOG0059|consen 810 KLLQNRFP-GAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFG-IEDYSLSQTTLEDVFLILAKTQEDDN 882 (885)
T ss_pred HHHHHhCC-CcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHHHHhccccccc
Confidence 77888899 6666666677788999844 4557789999999988888 99999999999999999998765543
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=1.5e-25 Score=244.81 Aligned_cols=176 Identities=38% Similarity=0.727 Sum_probs=143.6
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-..|.|||||+. +++|+++||||||+||||.+++.+|+.|.+++++|+|||+|||+++|++.+||||++|.+
T Consensus 2068 ~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~-- 2145 (2272)
T TIGR01257 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVK-- 2145 (2272)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC--
Confidence 4467889999987 799999999999999999999999999999877799999999999999997777777765
Q ss_pred EeeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCC------
Q psy859 86 LRKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGD------ 159 (247)
Q Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~------ 159 (247)
|+++|.|++++++++++.++.+.+++....
T Consensus 2146 --------------------------------------------G~i~~~Gs~q~Lk~~~g~g~~l~i~~~~~~~~~~~~ 2181 (2272)
T TIGR01257 2146 --------------------------------------------GAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPD 2181 (2272)
T ss_pred --------------------------------------------CEEEEECCHHHHHHHhCCceEEEEEEcCcchhhhhH
Confidence 555579999999999999998888775321
Q ss_pred HHHHHHHHHhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhcCCC
Q psy859 160 LDQLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGRGQ 236 (247)
Q Consensus 160 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~~~ 236 (247)
.+.+..++...+| +....+.+.+.+.|.++.. .++.+++.++..+.+.+ |.+|+++++||||||++++++...
T Consensus 2182 ~~~v~~~i~~~fp-~a~~~e~~~~~l~~~i~~~--~~~~if~~L~~~k~~l~-I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2182 LNPVEQFFQGNFP-GSVQRERHYNMLQFQVSSS--SLARIFQLLISHKDSLL-IEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHHHHHHHhhcCc-cceeeccccceEEEEeCcc--cHHHHHHHHHhcCCCCC-eEEEEcCCCCHHHHHHHHhccccc
Confidence 1234455666677 4444455566777888653 68899999987766677 999999999999999999977543
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=7.8e-25 Score=239.33 Aligned_cols=174 Identities=27% Similarity=0.554 Sum_probs=149.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +++|+++||||||+||||.+++.+|++|++++ +|+|||++||++++++.+||||++|++|++
T Consensus 1060 ~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138 (2272)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 456779999988 78999999999999999999999999999985 699999999999999998888888876555
Q ss_pred eeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecC---------
Q psy859 87 RKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLRE--------- 157 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~--------- 157 (247)
++.|++.+||++||.++.+.+....
T Consensus 1139 ----------------------------------------------~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~ 1172 (2272)
T TIGR01257 1139 ----------------------------------------------YCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGG 1172 (2272)
T ss_pred ----------------------------------------------EEecCHHHHHHhcCCcEEEEEEeccccccccccc
Confidence 4689999999999999988875431
Q ss_pred ------------------------------CCHHHHHHHHHhhccCceEEeeecCCEEEEEEcCCC---cCHHHHHHHHH
Q psy859 158 ------------------------------GDLDQLKERIRTEFKGRVEIKDEHKGLIHYQILDTT---FSWSVLFAKME 204 (247)
Q Consensus 158 ------------------------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~l~ 204 (247)
.+...+.+++.+++| .+......++.+.|.+|... ..++.+|+.|+
T Consensus 1173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP-~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le 1251 (2272)
T TIGR01257 1173 CEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVP-EAKLVECIGQELIFLLPNKNFKQRAYASLFRELE 1251 (2272)
T ss_pred ccccccccccccccccccccccccccccccccHHHHHHHHHHhCC-CcEEEeccCCEEEEEecccccccchHHHHHHHHH
Confidence 134568888989999 77777788899999998764 34889999999
Q ss_pred HhhcCCCcccEEEecCCCHHHHHHHHHhcC
Q psy859 205 AVKTSMDIVEDYSLSDTTLEQVFIAFAKGR 234 (247)
Q Consensus 205 ~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~ 234 (247)
......+ |.+|.++.+||||||+++..+.
T Consensus 1252 ~~~~~lg-i~sygis~tTLEeVFlkv~~~~ 1280 (2272)
T TIGR01257 1252 ETLADLG-LSSFGISDTPLEEIFLKVTEDA 1280 (2272)
T ss_pred hhHhhCC-CceEEeecCCHHHHHHHhhhhc
Confidence 8877888 9999999999999999998654
No 4
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=188.56 Aligned_cols=164 Identities=25% Similarity=0.472 Sum_probs=122.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|+|+.||.+ +|+|+++|||||+|||||+..+.+.+.+.+++++|.|||+|||.|+.+|++||++.+|++|+.
T Consensus 131 LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~-- 208 (300)
T COG4152 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT-- 208 (300)
T ss_pred hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCce--
Confidence 3678888888 899999999999999999999999999999999999999999999999997777777776554
Q ss_pred ccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHHHH
Q psy859 89 RRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERIR 168 (247)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~l~ 168 (247)
+..|+++.+++.+|+.. +.+.-. .+.+.+.
T Consensus 209 --------------------------------------------V~~G~v~~ir~~~Gkk~-~~ies~-~s~eeL~---- 238 (300)
T COG4152 209 --------------------------------------------VLYGTVEDIRRSFGKKR-LVIESD-LSLEELA---- 238 (300)
T ss_pred --------------------------------------------EEeccHHHHHHhcCCce-EEEecc-CchHHHh----
Confidence 45999999999999864 334311 1222232
Q ss_pred hhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhcCC
Q psy859 169 TEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGRG 235 (247)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~~ 235 (247)
..|+.........+.+.+.+.+++ ....+|+.+. .+.- |..|....|||+|+|+.-+++..
T Consensus 239 -~ipgi~~~~~~~~G~~~i~ie~e~-~a~~ifq~~a---~~g~-i~~Fe~~~PsL~diFi~~~g~~~ 299 (300)
T COG4152 239 -NIPGILKITETKDGSWRIQIENET-VAREIFQEVA---RDGY-IQRFELQEPSLHDIFIEKVGGVN 299 (300)
T ss_pred -cCCCceeeeeccCCceEeecccch-HHHHHHHHHh---ccce-eEEEeecCCCHHHHHHHHhcccc
Confidence 245322333223455555655443 3456666443 2334 89999999999999998887653
No 5
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=1.9e-22 Score=183.98 Aligned_cols=169 Identities=24% Similarity=0.389 Sum_probs=117.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +++|++|||||||+||||.+++.+|++|++++++|+|||++||++++++.+||+|++|++|++
T Consensus 123 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202 (302)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 356889999988 799999999999999999999999999999987799999999999999999999988887766
Q ss_pred eeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCC-HHHHHH
Q psy859 87 RKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGD-LDQLKE 165 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~-~~~l~~ 165 (247)
+ +.|++++++++++.. .+.+...... ......
T Consensus 203 ~----------------------------------------------~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 235 (302)
T TIGR01188 203 I----------------------------------------------AEGTPEELKRRLGKD-TLESRPRDIQSLKVEVS 235 (302)
T ss_pred E----------------------------------------------EECCHHHHHHhcCCc-eEEEEecCchhhhhhhh
Confidence 4 589999998877543 3344332211 111111
Q ss_pred HH----HhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHH
Q psy859 166 RI----RTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFA 231 (247)
Q Consensus 166 ~l----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~ 231 (247)
.+ ....+ .+......++.+.+.++......+.+++.+.. .+.. +.++.+..+||||+|++++
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 236 MLIAELGETGL-GLLAVTVDSDRIKILVPDGDETVPEIVEAAIR--NGIR-IRSISTERPSLDDVFLKLT 301 (302)
T ss_pred HHHhhhhhccc-cceeeeecCCeEEEEEcCchhHHHHHHHHHHH--CCCc-eEEEEcCCCCHHHHHHHHh
Confidence 11 01111 11111122344555554322234556655532 3456 8899999999999999886
No 6
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=4.5e-22 Score=182.47 Aligned_cols=162 Identities=24% Similarity=0.358 Sum_probs=111.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +++|+++||||||+||||.+++.+|++|++++++|+|||+|||++++++.+||||++|++|++
T Consensus 137 ~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 356789999998 899999999999999999999999999999987899999999999999998888888887666
Q ss_pred eeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHH
Q psy859 87 RKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKER 166 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~ 166 (247)
+ +.|+++++++.......+.+... ....+...
T Consensus 217 ~----------------------------------------------~~g~~~~l~~~~~~~~~~~~~~~--~~~~~~~~ 248 (306)
T PRK13537 217 I----------------------------------------------AEGAPHALIESEIGCDVIEIYGP--DPVALRDE 248 (306)
T ss_pred E----------------------------------------------EECCHHHHHhccCCCeEEEEEcC--ChHHHHHH
Confidence 4 58999999876543334444322 22222222
Q ss_pred HHhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhcC
Q psy859 167 IRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGR 234 (247)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~ 234 (247)
+... ...+ ...+..+.+.... ...+++.+.. ... + .+....+||||+|++++++.
T Consensus 249 ~~~~---~~~~-~~~~~~~~~~~~~----~~~~~~~l~~---~~~-~-~~~~~~~sLed~f~~~~~~~ 303 (306)
T PRK13537 249 LAPL---AERT-EISGETLFCYVRD----PEPLHARLKG---RAG-L-RYLHRPANLEDVFLRLTGRE 303 (306)
T ss_pred hhhc---ccee-eeeCCEEEEEeCC----HHHHHHHHHh---ccC-c-eEEecCCCHHHHHHHHhCcc
Confidence 2111 1111 1223344343321 2345444421 112 3 35558999999999998643
No 7
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=1.6e-21 Score=181.83 Aligned_cols=161 Identities=24% Similarity=0.338 Sum_probs=111.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +++|+++||||||+||||.+++.+|++|++++++|+|||+|||++++++.+||+|++|++|+++
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 45779999988 7999999999999999999999999999999778999999999999999988888888877664
Q ss_pred eccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHHH
Q psy859 88 KRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERI 167 (247)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~l 167 (247)
+.|+++++++.+.....+.+.. .....+....
T Consensus 252 ----------------------------------------------~~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~ 283 (340)
T PRK13536 252 ----------------------------------------------AEGRPHALIDEHIGCQVIEIYG--GDPHELSSLV 283 (340)
T ss_pred ----------------------------------------------EEcCHHHHHhhccCceEEEEEc--CChHHHHHHh
Confidence 5899999987765444433332 2222232222
Q ss_pred HhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhcC
Q psy859 168 RTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGR 234 (247)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~ 234 (247)
... .......+..+.+.... ...+.+.+.. . . ..++.+..+||||+|++++++.
T Consensus 284 ~~~----~~~~~~~~~~~~~~~~~----~~~~~~~l~~---~-~-~~~~~~~~~sLEdvf~~~~~~~ 337 (340)
T PRK13536 284 KPY----ARRIEVSGETLFCYAPD----PEQVRVQLRG---R-A-GLRLLQRPPNLEDVFLRLTGRE 337 (340)
T ss_pred hcc----cceEEecCCEEEEEeCC----HHHHHHHHHh---c-c-CceEEEcCCCHHHHHHHHhccc
Confidence 111 11111122333332211 2344443321 1 1 2267889999999999998653
No 8
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=5.3e-21 Score=174.59 Aligned_cols=164 Identities=23% Similarity=0.329 Sum_probs=114.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +++|+++||||||+||||.+++.+|+.++++++ ++|||++||++++++.+||||++|++|++
T Consensus 132 ~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 356889999998 899999999999999999999999999999854 79999999999999998888888887666
Q ss_pred eeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHH
Q psy859 87 RKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKER 166 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~ 166 (247)
+ +.|+++++++.++. ..+.+.+....... .
T Consensus 211 ~----------------------------------------------~~g~~~~~~~~~~~-~~~~i~~~~~~~~~---~ 240 (301)
T TIGR03522 211 V----------------------------------------------ADKKLDELSAANKK-QVIEVEFEEQIDLQ---L 240 (301)
T ss_pred E----------------------------------------------EeCCHHHHHHhcCC-ceEEEEecCcchhH---H
Confidence 4 58999999876543 34445443211111 1
Q ss_pred HHhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHH
Q psy859 167 IRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAF 230 (247)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~ 230 (247)
+. ...+........++.+.+..........++.+.+.. .+.. +.++...++||||+|.++
T Consensus 241 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 241 FE-TLEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQQ--KGLK-LISLQQNEKNLEQVFREI 300 (301)
T ss_pred Hh-hccccceeeecCCCeEEEEEcCccchHHHHHHHHHH--CCCc-eEEEEeCCCCHHHHHHHh
Confidence 11 111111111112334444433322234556554432 3455 889999999999999876
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=2e-21 Score=177.73 Aligned_cols=151 Identities=26% Similarity=0.508 Sum_probs=107.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G-~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.=|.|||||+. +++|+++||||||+||||.++..+|++|++++++| +||++|||.+++++.+||+|++|++|++
T Consensus 136 ~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~ 215 (293)
T COG1131 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215 (293)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE
Confidence 35789999998 89999999999999999999999999999998877 8999999999999998888888887666
Q ss_pred eeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHH
Q psy859 87 RKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKER 166 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~ 166 (247)
+ +.|++.++...++....+.+.........
T Consensus 216 ~----------------------------------------------~~g~~~~l~~~~~~~~~~~~~~~~~~~~~---- 245 (293)
T COG1131 216 I----------------------------------------------AEGTPEELKEKFGGKGVIELEPERLELAE---- 245 (293)
T ss_pred E----------------------------------------------EeCCHHHHHHhhccCceEEEecccccchh----
Confidence 4 58999999888775444333321111111
Q ss_pred HHhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHh
Q psy859 167 IRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAK 232 (247)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~ 232 (247)
... ... ...+ ......+...+.. .+.. +..+.....+||++|+..++
T Consensus 246 ---~~~-~~~---~~~~---------~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~~~~~ 292 (293)
T COG1131 246 ---LLE-GLK---LVKG---------EEELAEILEALLE--EGVK-IESIEVKEPSLEDVFLELTG 292 (293)
T ss_pred ---hhh-ccc---cccc---------chhHHHHHHHHHH--cCCc-eeeeecCCCCHHHHHHHHcc
Confidence 000 000 0000 1122334433332 2334 56888899999999998875
No 10
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=1.8e-20 Score=171.06 Aligned_cols=161 Identities=26% Similarity=0.348 Sum_probs=112.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +++|+++||||||+||||.++..++++|++++++|.|||++||++++++.+||++++|++|+++
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 46789999987 7999999999999999999999999999999778999999999999999999999999877664
Q ss_pred eccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHHH
Q psy859 88 KRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERI 167 (247)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~l 167 (247)
+.|+++++...+.....+.+.. +....+...+
T Consensus 215 ----------------------------------------------~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 246 (303)
T TIGR01288 215 ----------------------------------------------AEGRPHALIDEQIGCNVIEIYG--GDPDELRELI 246 (303)
T ss_pred ----------------------------------------------EEcCHHHHHhhcCCCeEEEEEc--CCHHHHHHHh
Confidence 5899999977654434333322 2323333322
Q ss_pred HhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhcC
Q psy859 168 RTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGR 234 (247)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~~ 234 (247)
.... ......+..+.+... ....++..+.. .. ..++....+||||+|++++++.
T Consensus 247 ~~~~----~~~~~~~~~~~~~~~----~~~~~~~~l~~----~~-~~~~~~~~~sLedif~~~~~~~ 300 (303)
T TIGR01288 247 RPYA----RRIEVSGETLFCYAR----DPEQVRVQLRG----RT-DLRLLQRPPNLEDVFLRLTGRE 300 (303)
T ss_pred hhcc----ceeeeeCCEEEEEeC----CHHHHHHHHhc----cc-CceEEecCCCHHHHHHHHhccc
Confidence 1111 111112333433222 12344443321 12 3468889999999999998653
No 11
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.82 E-value=3.3e-20 Score=162.94 Aligned_cols=74 Identities=32% Similarity=0.630 Sum_probs=68.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +|+|.+++|||||+|||..+++.+.+++++++.+|++|++|||.|.|++.+||||++|++|+++
T Consensus 134 ~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv 212 (245)
T COG4555 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE
Confidence 3679999998 8999999999999999999999999999999888999999999999999988888888877665
No 12
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.4e-19 Score=164.80 Aligned_cols=162 Identities=22% Similarity=0.372 Sum_probs=115.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
+-|+|||.|.. +|+|++|||||||-|||..++..+++++++.. +++.||+++||+++.++.+||||++|+.|++
T Consensus 156 ~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql 235 (325)
T COG4586 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL 235 (325)
T ss_pred hccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE
Confidence 34678877765 89999999999999999999999999999995 5699999999999999998888888886665
Q ss_pred eeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHhhCCceEEEEEecCCCHHHHHHH
Q psy859 87 RKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKER 166 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~ 166 (247)
+ .+|+.++|+++|++...+.+.+...... +.
T Consensus 236 v----------------------------------------------~dg~l~~l~~~f~~~k~~~~el~~~~~~---~~ 266 (325)
T COG4586 236 V----------------------------------------------FDGTLAQLQEQFGPYKEFSVELKQAKSL---SQ 266 (325)
T ss_pred e----------------------------------------------ecccHHHHHHHhCCceEEEEEEcccccc---hh
Confidence 4 5999999999999988888777521111 10
Q ss_pred HHhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEEEecCCCHHHHHHHHHhc
Q psy859 167 IRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKG 233 (247)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~sLEdvFl~~~~~ 233 (247)
+.. .+ .+.. ..+..+.+...... ....+. ....... +.+..+.+++.|++.-+++++
T Consensus 267 l~~-l~-d~~~--~~~~~~~~~~~r~~-~~~~i~----~~~~e~~-v~Dl~v~d~~ie~vi~r~y~~ 323 (325)
T COG4586 267 LAL-LG-DVTI--EEGLNIKNDVSREE-SADIIA----KLLAEFE-VRDLTVEDPEIEDVIRRIYQK 323 (325)
T ss_pred ccc-cc-hhhh--hcccchhhcchhHH-HHHHHH----HHHHhhh-hccCCCCCCcHHHHHHHHHhc
Confidence 100 11 1111 11233333322211 111222 2223445 889999999999999888764
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=3.2e-17 Score=146.89 Aligned_cols=73 Identities=27% Similarity=0.521 Sum_probs=65.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||+|.+ ..||+++|+||||+||||.+...+-++|+++++. |.|++++||+++++..+|||++++.+|+|+
T Consensus 147 SGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred cchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 557777776 7899999999999999999999999999999765 999999999999999988888888876664
No 14
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.71 E-value=5.2e-17 Score=139.38 Aligned_cols=75 Identities=20% Similarity=0.423 Sum_probs=70.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|++++++|.|||++||++++++.+||++++|++|+++
T Consensus 126 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 45779999988 7899999999999999999999999999998777999999999999999999999999999974
No 15
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.70 E-value=1.5e-16 Score=151.80 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=73.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +++|++|||||||+|||+..+..++++|++++++|+|||++||+++++.++|||+++|++|++
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~i 217 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRV 217 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 356789999998 799999999999999999999999999999977799999999999999999999999999998
Q ss_pred eecccc
Q psy859 87 RKRRNC 92 (247)
Q Consensus 87 ~~~~~~ 92 (247)
++..++
T Consensus 218 v~~G~~ 223 (402)
T PRK09536 218 RAAGPP 223 (402)
T ss_pred EEecCH
Confidence 754333
No 16
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.69 E-value=1.2e-16 Score=139.46 Aligned_cols=75 Identities=25% Similarity=0.499 Sum_probs=69.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++.|+|||++||+++++..+||++++|++|+++
T Consensus 143 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 45779999988 7899999999999999999999999999998768999999999999999999999999988875
No 17
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=140.03 Aligned_cols=76 Identities=21% Similarity=0.416 Sum_probs=69.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|++++++|+|||++||+++++..+||++++|++|+++
T Consensus 137 ~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 45778888888 6899999999999999999999999999998777999999999999999999999999988876
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 217 ~ 217 (237)
T PRK11614 217 L 217 (237)
T ss_pred e
Confidence 3
No 18
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.1e-16 Score=140.06 Aligned_cols=75 Identities=23% Similarity=0.437 Sum_probs=68.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++.+ .|+|||++||+++++..+||++++|++|++
T Consensus 136 ~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i 215 (235)
T cd03261 136 ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215 (235)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeE
Confidence 46779999988 789999999999999999999999999999876 499999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 216 ~ 216 (235)
T cd03261 216 V 216 (235)
T ss_pred E
Confidence 5
No 19
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.3e-16 Score=139.48 Aligned_cols=75 Identities=21% Similarity=0.430 Sum_probs=68.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++.+ .|+|||++||+++++..+||++++|++|++
T Consensus 144 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i 223 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45779999988 789999999999999999999999999999865 499999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 224 ~ 224 (241)
T cd03256 224 V 224 (241)
T ss_pred E
Confidence 6
No 20
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.4e-16 Score=144.48 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=69.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|++|||||||+|||+.++..++++|.+++++|.|||++||+++++..+||++++|++|+++
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 35678999888 7899999999999999999999999999999777999999999999999999999999988875
No 21
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.4e-16 Score=144.78 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=68.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|++|||||||+|||+.+++.+++++.+++++|+|||++||+++++..+||||++|++|+++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 45778888888 7899999999999999999999999999998777999999999999999999999999887775
No 22
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.9e-16 Score=143.71 Aligned_cols=76 Identities=28% Similarity=0.491 Sum_probs=69.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+.++..++++|+++.++ |+|||++||+++++..+||||++|++|+
T Consensus 143 ~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 143 FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 346779999988 7899999999999999999999999999999664 9999999999999999899999998777
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 223 i~ 224 (287)
T PRK13637 223 CE 224 (287)
T ss_pred EE
Confidence 65
No 23
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.68 E-value=1.3e-16 Score=137.76 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=69.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++|.|||++||+++++..+||++++|++|++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 138 QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 46778999888 789999999999999999999999999999877799999999999999999999999999974
No 24
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2e-16 Score=139.01 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=69.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.+++.++++|.+++++ |+|||++||+++++..+||++++|++|+
T Consensus 135 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 346789999998 7899999999999999999999999999998764 8999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 215 i~ 216 (239)
T cd03296 215 IE 216 (239)
T ss_pred EE
Confidence 75
No 25
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.6e-16 Score=136.90 Aligned_cols=75 Identities=28% Similarity=0.433 Sum_probs=70.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|.++++ .|.|||++||+++++..+||++++|++|++
T Consensus 130 ~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 46779999988 789999999999999999999999999999865 499999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 210 ~ 210 (213)
T cd03259 210 V 210 (213)
T ss_pred E
Confidence 6
No 26
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.68 E-value=2.3e-16 Score=136.35 Aligned_cols=76 Identities=17% Similarity=0.355 Sum_probs=69.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|++++|||||+|||+.++..+++.|+++++.|.|||++||+++++..+||++++|++|++
T Consensus 131 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (222)
T cd03224 131 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRV 210 (222)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeE
Confidence 346789999988 689999999999999999999999999999877799999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 211 ~ 211 (222)
T cd03224 211 V 211 (222)
T ss_pred E
Confidence 5
No 27
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.3e-16 Score=137.64 Aligned_cols=76 Identities=30% Similarity=0.542 Sum_probs=69.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++ |+|||++||+++++..+||++++|++|+
T Consensus 139 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 218 (233)
T cd03258 139 AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGE 218 (233)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 356889999988 7899999999999999999999999999998765 9999999999999999999999999888
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 219 i~ 220 (233)
T cd03258 219 VV 220 (233)
T ss_pred EE
Confidence 75
No 28
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=146.10 Aligned_cols=76 Identities=17% Similarity=0.372 Sum_probs=69.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|+++.++ |.|||++||+++++..+||||++|++|+|
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 45779999988 7899999999999999999999999999999764 99999999999999999999999998888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 238 ve 239 (330)
T PRK15093 238 VE 239 (330)
T ss_pred EE
Confidence 64
No 29
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.68 E-value=2.4e-16 Score=137.33 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=70.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.+++.++++|+++.+.|+|||++||+++++..+||++++|++|++
T Consensus 132 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 211 (232)
T cd03218 132 SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKV 211 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 356789999988 789999999999999999999999999999877799999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 212 ~ 212 (232)
T cd03218 212 L 212 (232)
T ss_pred E
Confidence 5
No 30
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.68 E-value=2.7e-16 Score=138.58 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=69.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.++|.|||++||+++++..+||++++|++|++
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 345779999988 789999999999999999999999999999877799999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 223 ~ 223 (250)
T PRK11264 223 V 223 (250)
T ss_pred E
Confidence 5
No 31
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.8e-16 Score=138.89 Aligned_cols=75 Identities=17% Similarity=0.399 Sum_probs=69.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|+++||||||+|||+.++..++++|.+++++ |.|||++||+++++..+||++++|++|++
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 35779999988 7899999999999999999999999999998765 89999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 233 ~ 233 (255)
T PRK11300 233 L 233 (255)
T ss_pred E
Confidence 6
No 32
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2e-16 Score=141.36 Aligned_cols=74 Identities=24% Similarity=0.505 Sum_probs=64.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.||+||++ +-+|++|+|||||+||||.+++.+.++++++..+ |+|+|++||+++++..+|||+++|++|+++
T Consensus 139 LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~ 218 (235)
T COG1122 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218 (235)
T ss_pred cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe
Confidence 3445555555 3499999999999999999999999999999766 799999999999999999999999988875
No 33
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.68 E-value=2.5e-16 Score=135.30 Aligned_cols=76 Identities=29% Similarity=0.569 Sum_probs=71.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|++++|||||+|||+.++..+++.+.+++++|+|||++||+++++..+||++++|++|++
T Consensus 125 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 125 KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 457889999987 789999999999999999999999999999877899999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 205 ~ 205 (208)
T cd03268 205 I 205 (208)
T ss_pred E
Confidence 6
No 34
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.3e-16 Score=144.90 Aligned_cols=77 Identities=21% Similarity=0.421 Sum_probs=69.9
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-.-|.|||||++ +.+|++|||||||+|||+.++..+++.|.++++.|.|||++||+++++..+||||++|++|+
T Consensus 163 ~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~ 242 (305)
T PRK13651 163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGK 242 (305)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCE
Confidence 3445778988888 68999999999999999999999999999998779999999999999999999999999877
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 243 i~ 244 (305)
T PRK13651 243 II 244 (305)
T ss_pred EE
Confidence 75
No 35
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.6e-16 Score=146.69 Aligned_cols=77 Identities=27% Similarity=0.516 Sum_probs=71.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +++|++|||||||+|||+.++..++++|++++++ |+|||++||+++++..+||++++|++|++
T Consensus 140 ~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219 (343)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 46889999988 7899999999999999999999999999998654 99999999999999999999999999998
Q ss_pred eec
Q psy859 87 RKR 89 (247)
Q Consensus 87 ~~~ 89 (247)
+..
T Consensus 220 ~~~ 222 (343)
T PRK11153 220 VEQ 222 (343)
T ss_pred EEE
Confidence 753
No 36
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.7e-16 Score=142.97 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=68.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|||||||+|||+.++..++++++++.++ |.|||++||+++++..+||||++|++|++
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45678988888 7899999999999999999999999999999654 99999999999999999999999987776
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (290)
T PRK13634 225 F 225 (290)
T ss_pred E
Confidence 5
No 37
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.67 E-value=2.7e-16 Score=137.89 Aligned_cols=75 Identities=23% Similarity=0.411 Sum_probs=68.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ .|+|||++||+++++..+||++++|++|++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 45678999988 789999999999999999999999999999865 489999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (243)
T TIGR02315 225 V 225 (243)
T ss_pred E
Confidence 5
No 38
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=2.2e-16 Score=139.83 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=69.0
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
|.||+||++ .-+|+++++|||||.|||....++.+.+++++++|+|++++||.|..|..+||||++|++|+++.
T Consensus 138 SGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie 216 (240)
T COG1126 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216 (240)
T ss_pred CcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEE
Confidence 568888888 56999999999999999999999999999999999999999999999999999999999887763
No 39
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.1e-16 Score=141.42 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=68.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++++++.++ |.|||++||+++++..+|||+++|++|++
T Consensus 137 ~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 137 HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 34678888888 7899999999999999999999999999998765 99999999999999999999999998777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 217 ~ 217 (277)
T PRK13652 217 V 217 (277)
T ss_pred E
Confidence 5
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.7e-16 Score=136.34 Aligned_cols=76 Identities=33% Similarity=0.667 Sum_probs=71.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|++++|||||+|||+.++..+++.|.++.++ |.|||++||+++++..+||++++|++|++
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 46789999988 7899999999999999999999999999998765 99999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
+.
T Consensus 211 ~~ 212 (220)
T cd03265 211 IA 212 (220)
T ss_pred EE
Confidence 74
No 41
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.67 E-value=2.1e-16 Score=135.79 Aligned_cols=74 Identities=28% Similarity=0.527 Sum_probs=68.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++|+|||++||++++++.+||++++|++|+
T Consensus 133 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 346789999988 78999999999999999999999999999987779999999999999999999999999884
No 42
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.1e-16 Score=145.36 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=69.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++||+||||+|||+..+..++++|+++++ .|.|+|++||+++++..+||||++|.+|+|
T Consensus 153 ~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 46789999998 789999999999999999999999999999975 599999999999999999999999998888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 233 ve 234 (326)
T PRK11022 233 VE 234 (326)
T ss_pred EE
Confidence 64
No 43
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.2e-16 Score=141.87 Aligned_cols=76 Identities=25% Similarity=0.543 Sum_probs=69.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+.++..+++.|.++.++ |+||+++||+++++..+|||+++|++|+
T Consensus 140 ~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~ 219 (283)
T PRK13636 140 HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219 (283)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 345779999988 7899999999999999999999999999998765 9999999999999999999999999877
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 220 i~ 221 (283)
T PRK13636 220 VI 221 (283)
T ss_pred EE
Confidence 75
No 44
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.67 E-value=3.2e-16 Score=137.18 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=69.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL-CNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l-~drV~ii~~G~i~ 87 (247)
.|.|||||+. +.+|+++||||||+|||+.++..++++|++++++|.|||++||++++++.+ ||++++|++|+++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 7889999988 789999999999999999999999999999977799999999999999998 8999999988875
No 45
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.7e-16 Score=140.15 Aligned_cols=76 Identities=22% Similarity=0.457 Sum_probs=69.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++|.|||++||+++++..+||++++|++|++
T Consensus 135 ~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214 (271)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 346779999988 789999999999999999999999999999877799999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 215 ~ 215 (271)
T PRK13638 215 L 215 (271)
T ss_pred E
Confidence 5
No 46
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.67 E-value=2.4e-16 Score=135.43 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=69.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++.|+|||++||+++++..+||++++|++|++
T Consensus 135 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 135 QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 45778888888 789999999999999999999999999999977799999999999999999999999999974
No 47
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=3e-16 Score=137.74 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=71.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|++++|||||+|||+.++..++++|.+++++|+|||++||+++++..+||++++|++|+++
T Consensus 136 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 45779999888 7899999999999999999999999999998777999999999999999999999999999998
Q ss_pred ec
Q psy859 88 KR 89 (247)
Q Consensus 88 ~~ 89 (247)
..
T Consensus 216 ~~ 217 (240)
T PRK09493 216 ED 217 (240)
T ss_pred ee
Confidence 53
No 48
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.67 E-value=3.3e-16 Score=146.55 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=73.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|+|||||+||||.++..++++|++++++ |.|||++||+++++.++||+|++|++|++
T Consensus 140 ~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i 219 (343)
T TIGR02314 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219 (343)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45779999988 7899999999999999999999999999999765 99999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
++..+..+
T Consensus 220 v~~g~~~~ 227 (343)
T TIGR02314 220 IEQGTVSE 227 (343)
T ss_pred EEEcCHHH
Confidence 86544433
No 49
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.67 E-value=3e-16 Score=135.96 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=70.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.++ |+|||++||+++++..+||++++|++|+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCE
Confidence 456789999988 7899999999999999999999999999998765 9999999999999999999999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 224 i~ 225 (228)
T cd03257 224 IV 225 (228)
T ss_pred EE
Confidence 86
No 50
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=4.2e-16 Score=139.98 Aligned_cols=76 Identities=29% Similarity=0.436 Sum_probs=69.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|++|||||||+|||+.++..++++|.++.+ .|+|||++||+++++..+||++++|++|+
T Consensus 159 ~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 357889999998 799999999999999999999999999999865 48999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 239 i~ 240 (269)
T cd03294 239 LV 240 (269)
T ss_pred EE
Confidence 75
No 51
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.67 E-value=4.4e-16 Score=130.22 Aligned_cols=74 Identities=27% Similarity=0.515 Sum_probs=69.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||+||+. +.+|++++|||||+|||+.+++.+++.+++++++|.|+|++||+++++..+||++++|++|+++
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 5778988888 7899999999999999999999999999999777999999999999999999999999999986
No 52
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=4.5e-16 Score=140.29 Aligned_cols=75 Identities=19% Similarity=0.439 Sum_probs=69.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||++ +.+|+++||||||+|||+.++..++++|++++++|+|||++||+++++.++|||+++|++|+++
T Consensus 138 ~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 138 HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 45778888888 7899999999999999999999999999999767999999999999999999999999988775
No 53
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.67 E-value=4.6e-16 Score=136.11 Aligned_cols=76 Identities=20% Similarity=0.371 Sum_probs=69.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ .|+|||++||+++++..+||++++|++|+
T Consensus 124 ~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 203 (230)
T TIGR02770 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203 (230)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 457789999988 789999999999999999999999999999876 48999999999999999999999999877
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 204 i~ 205 (230)
T TIGR02770 204 IV 205 (230)
T ss_pred EE
Confidence 75
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.67 E-value=2.6e-16 Score=135.48 Aligned_cols=73 Identities=23% Similarity=0.499 Sum_probs=68.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|++++++|+|||++||+++++..+||++++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 45779999988 78999999999999999999999999999987779999999999999999999999999885
No 55
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=3.3e-16 Score=135.30 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=70.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++++|||||+|||+.+++.+++.|++++++ |.|||++||+++++..+||++++|++|++
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 45778999888 7899999999999999999999999999998765 99999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 211 ~ 211 (214)
T cd03297 211 Q 211 (214)
T ss_pred E
Confidence 6
No 56
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.66 E-value=2.9e-16 Score=133.02 Aligned_cols=73 Identities=27% Similarity=0.505 Sum_probs=68.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.|.|||||+. +.+|+++||||||+|||+.+++.+++.+.+++++|.|+|++||+++++..+||++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 6779999987 789999999999999999999999999999876799999999999999999999999999974
No 57
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.66 E-value=4.2e-16 Score=135.82 Aligned_cols=77 Identities=25% Similarity=0.398 Sum_probs=70.1
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-..|.|||||+. +.+|++++|||||+|||+.++..++++|.+++++ |+|||++||+++++..+||+++++++|
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 3356889999888 7899999999999999999999999999998764 899999999999999999999999988
Q ss_pred EEe
Q psy859 85 ELR 87 (247)
Q Consensus 85 ~i~ 87 (247)
+++
T Consensus 209 ~i~ 211 (230)
T TIGR03410 209 RVV 211 (230)
T ss_pred EEE
Confidence 876
No 58
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.66 E-value=5.2e-16 Score=137.88 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=69.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.+++.+++.|+++++.|+|||++||+++++..+|||+++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 45778888887 7899999999999999999999999999999777999999999999999999999999988875
No 59
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.66 E-value=3e-16 Score=137.61 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=70.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.+++.+++.|.++.+ .|+|||++||+++++..+||++++|++|+
T Consensus 113 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 192 (230)
T TIGR01184 113 GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGP 192 (230)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCc
Confidence 346779999988 689999999999999999999999999999865 48999999999999999999999999999
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
++.
T Consensus 193 i~~ 195 (230)
T TIGR01184 193 AAN 195 (230)
T ss_pred Eec
Confidence 973
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.6e-16 Score=135.56 Aligned_cols=77 Identities=29% Similarity=0.445 Sum_probs=70.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEe--C
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR--G 83 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~--~ 83 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..++++|+++.+ .|+|||++||+++++..+||++++|+ +
T Consensus 130 ~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~ 209 (220)
T cd03293 130 HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARP 209 (220)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCC
Confidence 457889999988 789999999999999999999999999999854 59999999999999999999999999 7
Q ss_pred CEEee
Q psy859 84 NELRK 88 (247)
Q Consensus 84 G~i~~ 88 (247)
|++++
T Consensus 210 G~i~~ 214 (220)
T cd03293 210 GRIVA 214 (220)
T ss_pred CEEEE
Confidence 99974
No 61
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.66 E-value=4.6e-16 Score=135.32 Aligned_cols=76 Identities=26% Similarity=0.462 Sum_probs=70.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|++++++ +|||++||+++++..+||++++|++|++
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 457889999988 7899999999999999999999999999999766 9999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 219 ~~ 220 (227)
T cd03260 219 VE 220 (227)
T ss_pred EE
Confidence 74
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.66 E-value=4.6e-16 Score=134.32 Aligned_cols=75 Identities=31% Similarity=0.614 Sum_probs=70.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|++++|||||+|||+.++..+++.|.+++++|+|||++||+++++..+||++++|++|+++
T Consensus 136 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 46779999988 7899999999999999999999999999998777999999999999999999999999999986
No 63
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.66 E-value=4.4e-16 Score=144.64 Aligned_cols=75 Identities=19% Similarity=0.402 Sum_probs=69.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++||+||||+|||+.++..++++|.+++++ |.|+|++||+++++..+||+|++|++|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 4789999988 7899999999999999999999999999999764 999999999999999999999999988876
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 242 e 242 (330)
T PRK09473 242 E 242 (330)
T ss_pred E
Confidence 4
No 64
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=5.3e-16 Score=139.58 Aligned_cols=76 Identities=26% Similarity=0.448 Sum_probs=70.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|++|||||||+|||+.++..+++.|.++++.|+|||++||+++++..+||++++|++|++
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEE
Confidence 356889999988 789999999999999999999999999999877799999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 224 ~ 224 (280)
T PRK13649 224 V 224 (280)
T ss_pred E
Confidence 5
No 65
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.66 E-value=4.7e-16 Score=146.43 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=72.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~--G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-|.|||||++ +.+|++++|||||+|||+..+..+++.|+++.++ |.|+|++||+++|+..+||||++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 45779999998 7899999999999999999999999999998765 8999999999999999999999999999
Q ss_pred Eeecccc
Q psy859 86 LRKRRNC 92 (247)
Q Consensus 86 i~~~~~~ 92 (247)
++...++
T Consensus 217 i~~~g~~ 223 (362)
T TIGR03258 217 LAAHGEP 223 (362)
T ss_pred EEEEcCH
Confidence 8754433
No 66
>PRK10908 cell division protein FtsE; Provisional
Probab=99.66 E-value=4.5e-16 Score=135.16 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=70.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++++.+++++|.|||++||+++++..+||++++|++|+++
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 45678999888 7899999999999999999999999999998777999999999999999999999999999986
No 67
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.66 E-value=4.2e-16 Score=134.11 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=70.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|+++||||||+|||+.+++.++++|+++++ .|.|||++||+++++..+||++++|++|++
T Consensus 130 ~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 130 QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 46889999987 789999999999999999999999999999875 499999999999999999999999999998
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 210 ~~ 211 (213)
T cd03301 210 QQ 211 (213)
T ss_pred Ee
Confidence 63
No 68
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.66 E-value=3.1e-16 Score=135.37 Aligned_cols=73 Identities=25% Similarity=0.442 Sum_probs=67.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ .|+|||++||++++++ +||++++|++|++
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 140 ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 45779999988 789999999999999999999999999999876 5999999999999998 9999999999974
No 69
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=5.7e-16 Score=140.41 Aligned_cols=75 Identities=27% Similarity=0.486 Sum_probs=68.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.=|.|||||++ +.+|+++||||||+|||+.++..++++++++++ .|.|||++||+++++..+||||++|++|++
T Consensus 145 ~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224 (286)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 34678888888 689999999999999999999999999999865 599999999999999999999999998777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (286)
T PRK13646 225 V 225 (286)
T ss_pred E
Confidence 5
No 70
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.5e-16 Score=145.63 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=68.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. ..+|++||.||||++||+..+..+.++|+++++ .|.|+|++|||+..+.++||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 4779999988 689999999999999999999999999999975 6999999999999999988888888877776
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 234 E 234 (316)
T COG0444 234 E 234 (316)
T ss_pred E
Confidence 3
No 71
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=4.7e-16 Score=133.85 Aligned_cols=75 Identities=20% Similarity=0.430 Sum_probs=69.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++.+ .|+|||++||+++++..+||++++|++|++
T Consensus 128 ~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence 34678888888 789999999999999999999999999999865 499999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 208 ~ 208 (211)
T cd03298 208 A 208 (211)
T ss_pred e
Confidence 6
No 72
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.66 E-value=6.6e-16 Score=135.54 Aligned_cols=73 Identities=22% Similarity=0.395 Sum_probs=67.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||+||+. +.+|++++|||||+|||+.++..++++|+++.+ ++|||++||+++++..+||++++|++|+++
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 4668888888 789999999999999999999999999999865 799999999999999999999999988875
No 73
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.66 E-value=6.1e-16 Score=138.78 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=69.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.+++.++++|++++++ |+|||++||+++++..+||++++|++|+
T Consensus 142 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 142 SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCE
Confidence 346789999988 7899999999999999999999999999998654 8999999999999999999999999888
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 222 i~ 223 (269)
T PRK11831 222 IV 223 (269)
T ss_pred EE
Confidence 75
No 74
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.9e-16 Score=137.35 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..++++|+++. +|+|||++||+++++..+||++++|++|++
T Consensus 153 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGEL 231 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 456789999988 78999999999999999999999999999985 489999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 232 ~ 232 (258)
T PRK14268 232 I 232 (258)
T ss_pred E
Confidence 5
No 75
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.66 E-value=6e-16 Score=143.12 Aligned_cols=83 Identities=25% Similarity=0.357 Sum_probs=73.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|+++||||||+|||+.++..+++.|+++.++ |+|+|++||+++++..+||+|++|++|+
T Consensus 99 ~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~ 178 (325)
T TIGR01187 99 HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178 (325)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 346789999988 7899999999999999999999999999998654 9999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...+..+
T Consensus 179 i~~~g~~~~ 187 (325)
T TIGR01187 179 IAQIGTPEE 187 (325)
T ss_pred EEEEcCHHH
Confidence 985444433
No 76
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.65 E-value=6.6e-16 Score=145.64 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=72.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|+++||||||+||||.++..+.+.+.++.+ .|+|||++||+++++..+||+|++|++|++
T Consensus 129 ~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~i 208 (363)
T TIGR01186 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI 208 (363)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 45789999998 789999999999999999999999999999865 499999999999999999999999999999
Q ss_pred eeccccc
Q psy859 87 RKRRNCL 93 (247)
Q Consensus 87 ~~~~~~~ 93 (247)
+...++.
T Consensus 209 v~~g~~~ 215 (363)
T TIGR01186 209 VQVGTPD 215 (363)
T ss_pred EeeCCHH
Confidence 7544433
No 77
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.65 E-value=6.4e-16 Score=143.70 Aligned_cols=76 Identities=25% Similarity=0.366 Sum_probs=69.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++||+||||+|||+.++..++++|++++++ |.|+|++||+++++..+||+|++|.+|++
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 35779999988 7899999999999999999999999999999764 99999999999999999999999998887
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 241 ve 242 (331)
T PRK15079 241 VE 242 (331)
T ss_pred EE
Confidence 64
No 78
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=7.1e-16 Score=135.70 Aligned_cols=76 Identities=36% Similarity=0.628 Sum_probs=69.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++ |+|||++||+++++..+||+|++|++|+
T Consensus 134 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 134 HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 446779999988 7999999999999999999999999999998764 9999999999999999999999999888
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 214 i~ 215 (242)
T cd03295 214 IV 215 (242)
T ss_pred EE
Confidence 75
No 79
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.2e-16 Score=135.39 Aligned_cols=76 Identities=28% Similarity=0.500 Sum_probs=69.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.+.++++.|+|||++||+++++..+||++++|++|++
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHL 215 (241)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeE
Confidence 356779999888 689999999999999999999999999999877799999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 216 ~ 216 (241)
T PRK10895 216 I 216 (241)
T ss_pred E
Confidence 5
No 80
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7e-16 Score=136.39 Aligned_cols=75 Identities=19% Similarity=0.364 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|++++ .|+|||++||+++++..+||+|++|++|++
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEE
Confidence 356789999988 78999999999999999999999999999985 489999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 227 ~ 227 (253)
T PRK14242 227 I 227 (253)
T ss_pred E
Confidence 5
No 81
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.65 E-value=5.1e-16 Score=133.81 Aligned_cols=73 Identities=25% Similarity=0.476 Sum_probs=67.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++|.|||++||+++++..+||++++|++|.+
T Consensus 133 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 133 LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 4668888888 789999999999999999999999999999877899999999999999999999999988743
No 82
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.7e-16 Score=135.07 Aligned_cols=82 Identities=22% Similarity=0.371 Sum_probs=72.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|.++.+ .|.|||++||+++++..+||++++|++|++
T Consensus 129 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 208 (232)
T PRK10771 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRI 208 (232)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 45778888888 789999999999999999999999999999865 499999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+...+..+
T Consensus 209 ~~~g~~~~ 216 (232)
T PRK10771 209 AWDGPTDE 216 (232)
T ss_pred EEeCCHHH
Confidence 85444333
No 83
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.8e-16 Score=139.82 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=70.6
Q ss_pred cchhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 10 ESPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 10 ~~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..-.-|.|||||++ +.+|++|||||||+|||+.++..+++.|.++.+ .|+|||++||+++++..+||++++|++
T Consensus 147 ~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 226 (289)
T PRK13645 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 34457889999988 789999999999999999999999999999865 499999999999999999999999998
Q ss_pred CEEe
Q psy859 84 NELR 87 (247)
Q Consensus 84 G~i~ 87 (247)
|+++
T Consensus 227 G~i~ 230 (289)
T PRK13645 227 GKVI 230 (289)
T ss_pred CEEE
Confidence 8875
No 84
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7.3e-16 Score=136.79 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=69.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..++++|.+++++|+|||++||+++++.++||++++|++|+++
T Consensus 138 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 45778988888 7899999999999999999999999999998777999999999999999999999999988875
No 85
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7.4e-16 Score=138.88 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=68.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.+++++++|.|||++||++++++ .||++++|++|++
T Consensus 135 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i 213 (274)
T PRK13644 135 KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKI 213 (274)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEE
Confidence 346789999988 7899999999999999999999999999998777999999999999996 5999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 214 ~ 214 (274)
T PRK13644 214 V 214 (274)
T ss_pred E
Confidence 5
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.65 E-value=5.2e-16 Score=133.43 Aligned_cols=74 Identities=22% Similarity=0.421 Sum_probs=69.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|++++++|+|||++||+++++..+||++++|++|++
T Consensus 136 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 46778999988 789999999999999999999999999999877799999999999999999999999999974
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7.8e-16 Score=142.40 Aligned_cols=75 Identities=17% Similarity=0.401 Sum_probs=68.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|++|||||||+|||+.++..++++|.+++++|+|||++||+++++..+||+|++|++|+++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 45778888888 7899999999999999999999999999998777999999999999999999999999987775
No 88
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7.9e-16 Score=142.75 Aligned_cols=76 Identities=25% Similarity=0.333 Sum_probs=69.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++||+||||+|||+..+..++++|.+++++ |.|||++||+++.+..+||+|++|.+|++
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 35778999988 7899999999999999999999999999999764 99999999999999999999999998888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 234 ve 235 (327)
T PRK11308 234 VE 235 (327)
T ss_pred EE
Confidence 64
No 89
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=8e-16 Score=132.30 Aligned_cols=76 Identities=30% Similarity=0.566 Sum_probs=71.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|++++|||||+|||+.++..+++.+++++++|.|||++||+++++..+||++++|++|++
T Consensus 127 ~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence 346889999987 689999999999999999999999999999877799999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 207 ~ 207 (210)
T cd03269 207 V 207 (210)
T ss_pred E
Confidence 6
No 90
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1e-15 Score=137.97 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=68.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.=|.|||||++ +.+|++++|||||+|||+.++..+++.+.+++++|.||+++||+++++..+||++++|++|+++
T Consensus 137 ~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216 (275)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 34678888888 7899999999999999999999999999998767999999999999999999999999987775
No 91
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=135.21 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=67.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++. +|+|||++||+++++..+||++++|++|+++
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMV 224 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 46789999987 78999999999999999999999999999984 5899999999999999999999999887775
No 92
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.64 E-value=9.1e-16 Score=134.02 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=71.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+.+++.+++++|.|+|++||+++++..+||+++++ +|++
T Consensus 112 ~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i 190 (223)
T TIGR03771 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRV 190 (223)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEE
Confidence 346789999988 7899999999999999999999999999998777999999999999999999999999 7999
Q ss_pred eecc
Q psy859 87 RKRR 90 (247)
Q Consensus 87 ~~~~ 90 (247)
+...
T Consensus 191 ~~~~ 194 (223)
T TIGR03771 191 IADG 194 (223)
T ss_pred Eeec
Confidence 8533
No 93
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.64 E-value=1.3e-15 Score=133.62 Aligned_cols=75 Identities=31% Similarity=0.464 Sum_probs=67.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.||+||+. +.+|+++||||||+|||+.++..+++.|.++++ +|.|||++||++++++. ||++++|++|+
T Consensus 131 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~ 209 (236)
T TIGR03864 131 RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGR 209 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCe
Confidence 356789999988 789999999999999999999999999999864 59999999999999985 99999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 210 i~ 211 (236)
T TIGR03864 210 VL 211 (236)
T ss_pred EE
Confidence 75
No 94
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.64 E-value=4e-16 Score=141.26 Aligned_cols=74 Identities=35% Similarity=0.646 Sum_probs=68.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||+||++ +++|+++++|||++.|||..|..+.+.+.++.++ |+||+++||+++||-.++|||++|++|+++
T Consensus 136 LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEE
Confidence 4779999998 7999999999999999999999999999999654 999999999999999999999888887775
No 95
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.2e-16 Score=137.21 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=69.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|+++||||||+|||+.+++.++++|.++.+. |.|||++||+++++..+||++++|++|++
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 46779999888 7899999999999999999999999999998654 99999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 227 ~ 227 (265)
T PRK10575 227 I 227 (265)
T ss_pred E
Confidence 5
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.64 E-value=1.3e-15 Score=134.50 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=67.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|+++||||||+|||+.++..++++|+++++ ++|||++||+++++..+||++++|++|+++
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 46789999988 789999999999999999999999999999866 599999999999999999999999988775
No 97
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.64 E-value=1.1e-15 Score=135.88 Aligned_cols=75 Identities=28% Similarity=0.478 Sum_probs=68.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..+++.++++.++ |.|||++||+++++..+||++++|++|++
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 45778988888 7899999999999999999999999999998654 99999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 231 ~ 231 (258)
T PRK11701 231 V 231 (258)
T ss_pred E
Confidence 5
No 98
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.64 E-value=1.2e-15 Score=133.55 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++ +|+|||++||++++++ .||++++|++|+++
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAVLQNGQVV 216 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEEEECCEEE
Confidence 45789999887 78999999999999999999999999999986 7999999999999998 79999999988875
No 99
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.64 E-value=9.9e-16 Score=137.00 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=69.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+.++..+++.|.++.++ |+|||++||+++++..+||++++|++|+
T Consensus 149 ~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 228 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228 (265)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCE
Confidence 456779999988 7899999999999999999999999999998764 9999999999999999999999998877
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 229 i~ 230 (265)
T TIGR02769 229 IV 230 (265)
T ss_pred EE
Confidence 75
No 100
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.7e-16 Score=134.65 Aligned_cols=77 Identities=19% Similarity=0.390 Sum_probs=71.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..++++|.+++++|+|+|++||+++++..+||++++|++|+++
T Consensus 141 ~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 34668888888 7899999999999999999999999999998777999999999999999999999999999997
Q ss_pred ec
Q psy859 88 KR 89 (247)
Q Consensus 88 ~~ 89 (247)
..
T Consensus 221 ~~ 222 (242)
T PRK11124 221 EQ 222 (242)
T ss_pred Ee
Confidence 53
No 101
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=1.4e-15 Score=137.11 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=69.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||++ +.+|++|||||||+|||+.++..+++.+.++++.|.|||++||+++++..+||++++|++|++
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEE
Confidence 346889999987 789999999999999999999999999999877799999999999999999999999887776
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 222 ~ 222 (264)
T PRK13546 222 K 222 (264)
T ss_pred E
Confidence 4
No 102
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.2e-15 Score=143.31 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=74.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|+|||||+|||+..+..+++.|+++.++ |.|+|++||+++++..+||++++|++|++
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 45779999998 7899999999999999999999999999998655 99999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+...++.+
T Consensus 214 ~~~g~~~~ 221 (356)
T PRK11650 214 EQIGTPVE 221 (356)
T ss_pred EEECCHHH
Confidence 86555444
No 103
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.64 E-value=1.1e-15 Score=145.00 Aligned_cols=76 Identities=30% Similarity=0.482 Sum_probs=69.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.||+||++ +.+|++|||||||+||||..+..+++.|.++.++ |+|||++||+++++.++||||++|++|++
T Consensus 164 ~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 164 ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRI 243 (382)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45779999988 7899999999999999999999999999998764 99999999999999999999999998888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
+.
T Consensus 244 v~ 245 (382)
T TIGR03415 244 IQ 245 (382)
T ss_pred EE
Confidence 64
No 104
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.64 E-value=1.2e-15 Score=143.07 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=73.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++++|||||+|||+..+..+++.|+++.++ |+|+|++||+++++..+||+|++|++|++
T Consensus 136 ~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45778999988 7899999999999999999999999999998765 99999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+...++.+
T Consensus 216 ~~~g~~~~ 223 (353)
T PRK10851 216 EQAGTPDQ 223 (353)
T ss_pred EEEcCHHH
Confidence 86544433
No 105
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.64 E-value=1.1e-15 Score=136.91 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=69.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++..+||++++|++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~ 227 (267)
T PRK15112 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGE 227 (267)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 357789999988 6899999999999999999999999999998654 9999999999999999999999999877
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 228 i~ 229 (267)
T PRK15112 228 VV 229 (267)
T ss_pred EE
Confidence 75
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.64 E-value=1.2e-15 Score=131.91 Aligned_cols=74 Identities=47% Similarity=0.868 Sum_probs=68.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++ +.|||++||+++++..+||++++|++|+++
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 45779999988 789999999999999999999999999999865 699999999999999999999999988875
No 107
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.64 E-value=1.2e-15 Score=135.56 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=69.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..++++|.+++++|.|||++||+++++..+||+|++|++|+++
T Consensus 137 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 137 TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE
Confidence 45778988888 7899999999999999999999999999998777999999999999999999999999988875
No 108
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=134.63 Aligned_cols=74 Identities=22% Similarity=0.408 Sum_probs=67.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++ ++.|||++||+++++..+|||+++|++|+++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 46778988888 78999999999999999999999999999985 4799999999999999999999999987775
No 109
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.64 E-value=1.2e-15 Score=133.59 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=70.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.+++.+++.+.+++++|.|||++||+++++..+||++++|++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 356789999987 789999999999999999999999999999877789999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 6
No 110
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.64 E-value=1.2e-15 Score=131.90 Aligned_cols=76 Identities=21% Similarity=0.466 Sum_probs=69.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|.++.++ |.|||++||+++++..+||++++|++|++
T Consensus 128 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207 (213)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeE
Confidence 35678888887 7899999999999999999999999999998654 89999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 208 ~~ 209 (213)
T TIGR01277 208 KV 209 (213)
T ss_pred EE
Confidence 75
No 111
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.8e-16 Score=135.08 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=72.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++ .|.|||++||+++++..+||++++|++|++
T Consensus 131 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 46789999988 789999999999999999999999999999876 499999999999999999999999999999
Q ss_pred eecccc
Q psy859 87 RKRRNC 92 (247)
Q Consensus 87 ~~~~~~ 92 (247)
+...+.
T Consensus 211 ~~~~~~ 216 (241)
T PRK14250 211 VEYAKT 216 (241)
T ss_pred EEeCCH
Confidence 754333
No 112
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=135.35 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=65.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|.+++ +++|||++||+++++..+||++++|++|.+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~~l~~~~~ 225 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTAFFNLEAT 225 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccC
Confidence 46778888888 78999999999999999999999999999985 479999999999999999999999985543
No 113
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.64 E-value=1.6e-15 Score=134.64 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=69.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|++|||||||+|||+.+++.+++.|+++.+ .|.|||++||+++++..+||++++|++|+
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~ 218 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGR 218 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 456889999988 789999999999999999999999999999865 48999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 219 i~ 220 (254)
T PRK10418 219 IV 220 (254)
T ss_pred EE
Confidence 75
No 114
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=143.57 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=73.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++++..+||++++|++|++
T Consensus 133 ~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 46789999988 7899999999999999999999999999998654 99999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+...++.+
T Consensus 213 ~~~g~~~~ 220 (369)
T PRK11000 213 AQVGKPLE 220 (369)
T ss_pred EEEcCHHH
Confidence 86444433
No 115
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.64 E-value=1e-15 Score=128.70 Aligned_cols=72 Identities=22% Similarity=0.403 Sum_probs=66.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-|.|||||+. +.+|+++||||||+|||+.++..+++.+++++++|+|||++||++++++ .||++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 5789999988 7899999999999999999999999999998777999999999999985 7999999999874
No 116
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=135.08 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=67.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ ++|+|++||+++++..+||++++|++|+++
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 46789999888 789999999999999999999999999999854 799999999999999999999999877765
No 117
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=135.85 Aligned_cols=74 Identities=24% Similarity=0.434 Sum_probs=67.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|+++.+ +.|||++||+++++..+||++++|++|+++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 46778999988 789999999999999999999999999999854 789999999999999999999999988775
No 118
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.63 E-value=1.4e-15 Score=142.17 Aligned_cols=77 Identities=21% Similarity=0.388 Sum_probs=71.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++.++ |+|||++||+++++..+||++++|++|++
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 45779999998 7899999999999999999999999999998765 89999999999999999999999999998
Q ss_pred eec
Q psy859 87 RKR 89 (247)
Q Consensus 87 ~~~ 89 (247)
+..
T Consensus 211 ~~~ 213 (354)
T TIGR02142 211 AAA 213 (354)
T ss_pred EEE
Confidence 753
No 119
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.63 E-value=1.6e-15 Score=134.64 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CC-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE
Q psy859 12 PACILIQRQSWG-----IG-------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLT 79 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~-------~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ 79 (247)
-.-|.|||||+. +. +|+++||||||+|||+.++..++++|++++++|.|||++||+++++..+||+++
T Consensus 125 ~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 345779999988 44 679999999999999999999999999987779999999999999999999999
Q ss_pred EEeCCEEe
Q psy859 80 IMRGNELR 87 (247)
Q Consensus 80 ii~~G~i~ 87 (247)
+|++|+++
T Consensus 205 ~l~~G~i~ 212 (248)
T PRK03695 205 LLKQGKLL 212 (248)
T ss_pred EEECCEEE
Confidence 99988875
No 120
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.63 E-value=1.3e-15 Score=132.26 Aligned_cols=77 Identities=30% Similarity=0.550 Sum_probs=71.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.||+||+. +.+|++++|||||+|||+.++..+++.+.+++++|+|||++||+++++..+||++++|++|++
T Consensus 123 ~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 356889999987 789999999999999999999999999999877799999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
+.
T Consensus 203 ~~ 204 (223)
T TIGR03740 203 GY 204 (223)
T ss_pred EE
Confidence 74
No 121
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=133.58 Aligned_cols=74 Identities=26% Similarity=0.390 Sum_probs=67.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|+++.+ ++|||++||+++++..+||++++|++|+++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLI 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 36778989888 789999999999999999999999999999854 699999999999999999999999988775
No 122
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.3e-15 Score=137.60 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=67.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||++++++. ||++++|++|++
T Consensus 144 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i 222 (280)
T PRK13633 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKV 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEE
Confidence 34678999888 789999999999999999999999999999865 59999999999999987 999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 223 ~ 223 (280)
T PRK13633 223 V 223 (280)
T ss_pred E
Confidence 5
No 123
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=142.37 Aligned_cols=83 Identities=20% Similarity=0.333 Sum_probs=73.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|++++|||||+|||+..+..+++.|+++.++ |+|+|++||+++++..+||++++|++|+
T Consensus 127 ~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 346779999988 7899999999999999999999999999998665 8999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 207 i~~~g~~~~ 215 (352)
T PRK11144 207 VKAFGPLEE 215 (352)
T ss_pred EEEecCHHH
Confidence 985444433
No 124
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.5e-15 Score=137.16 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=67.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.=|.|||||++ +.+|++|||||||+|||+.+++.+++.|.+++++ |+|||++||+++++. .||++++|++|++
T Consensus 140 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i 218 (279)
T PRK13650 140 RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV 218 (279)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence 34678999888 7899999999999999999999999999999765 999999999999995 7999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 219 ~ 219 (279)
T PRK13650 219 E 219 (279)
T ss_pred E
Confidence 5
No 125
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.63 E-value=1.7e-15 Score=133.98 Aligned_cols=75 Identities=28% Similarity=0.471 Sum_probs=68.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..++++|.++.+ .|.|||++||+++++..+||++++|++|++
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 45779999988 789999999999999999999999999999865 499999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 228 ~ 228 (253)
T TIGR02323 228 V 228 (253)
T ss_pred E
Confidence 5
No 126
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.63 E-value=2e-15 Score=132.78 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=69.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh-cCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL-CNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l-~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|++++|||||+|||+.++..+.+.+.++++.|+|||++||+++++..+ ||++++|++|++
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 224 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeE
Confidence 57889999998 789999999999999999999999999999877799999999999999997 899999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (248)
T PRK09580 225 V 225 (248)
T ss_pred E
Confidence 5
No 127
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.8e-15 Score=131.50 Aligned_cols=73 Identities=18% Similarity=0.388 Sum_probs=66.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.+.++. +|+|||++||++++++. ||++++|++|+++
T Consensus 139 ~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~ 216 (229)
T cd03254 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADKILVLDDGKII 216 (229)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEEeCCeEE
Confidence 45778999888 79999999999999999999999999999985 59999999999999975 9999999988875
No 128
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.63 E-value=1.7e-15 Score=135.10 Aligned_cols=76 Identities=22% Similarity=0.416 Sum_probs=68.9
Q ss_pred hhhhHHHHHHhh-----C------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEE
Q psy859 12 PACILIQRQSWG-----I------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLT 79 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ 79 (247)
-.-|.|||||+. + .+|++++|||||+|||+.++..+.+.|+++. +.|.|||++||+++++..+||+|+
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEE
Confidence 345778999888 4 4999999999999999999999999999987 679999999999999999999999
Q ss_pred EEeCCEEe
Q psy859 80 IMRGNELR 87 (247)
Q Consensus 80 ii~~G~i~ 87 (247)
+|++|+++
T Consensus 213 ~l~~G~i~ 220 (258)
T PRK13548 213 LLHQGRLV 220 (258)
T ss_pred EEECCEEE
Confidence 99988875
No 129
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=133.57 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|.++.+ |+|+|++||+++++..+||++++|++|+++
T Consensus 146 ~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 146 KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 35778888888 789999999999999999999999999999854 899999999999999999999999987775
No 130
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=149.72 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=68.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||+. +.+|++||+||||++||+..+..+.++|++++ +.|+++|++||++..+.++||||++|.+|+++
T Consensus 155 LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 3678999987 78999999999999999999999999999996 56999999999999999999999999988776
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 235 E 235 (539)
T COG1123 235 E 235 (539)
T ss_pred E
Confidence 4
No 131
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.3e-15 Score=128.02 Aligned_cols=73 Identities=40% Similarity=0.772 Sum_probs=68.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.|.|||||+. +.+|++++|||||+|||+.++..+++.|.++.++|.|+|++||+++++..+||++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 6889999988 789999999999999999999999999999977799999999999999999999999999874
No 132
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.63 E-value=1.3e-15 Score=131.80 Aligned_cols=75 Identities=20% Similarity=0.373 Sum_probs=68.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ .|+|||++||++++++. ||++++|++|+
T Consensus 140 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~ 218 (221)
T TIGR02211 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQ 218 (221)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCE
Confidence 356789999988 789999999999999999999999999999865 48999999999999976 89999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 219 i~ 220 (221)
T TIGR02211 219 LF 220 (221)
T ss_pred ec
Confidence 85
No 133
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.7e-15 Score=132.06 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=67.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..-|.|||||+. +.+|++++|||||+|||+.++..+++.|+++. +|+|||++||++++++. ||++++|++|++
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~~l~~G~i 214 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKI 214 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEEEecCCeE
Confidence 356789999988 78999999999999999999999999999985 48999999999999987 999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 215 ~ 215 (234)
T cd03251 215 V 215 (234)
T ss_pred e
Confidence 5
No 134
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2e-15 Score=133.46 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=67.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ ++|||++||+++++..+||++++|++|+++
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 45778999988 789999999999999999999999999999854 799999999999999999999999988775
No 135
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.6e-15 Score=142.18 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=74.0
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||++ +.+|++++||||++|||+..+..+++.|+++.++ |.|+|++||+++++..+||+|++|++|
T Consensus 134 ~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 134 VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 3456789999988 7899999999999999999999999999998654 999999999999999999999999999
Q ss_pred EEeeccccc
Q psy859 85 ELRKRRNCL 93 (247)
Q Consensus 85 ~i~~~~~~~ 93 (247)
+++...++.
T Consensus 214 ~i~~~g~~~ 222 (351)
T PRK11432 214 KIMQIGSPQ 222 (351)
T ss_pred EEEEEcCHH
Confidence 998644443
No 136
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.63 E-value=2e-15 Score=132.13 Aligned_cols=73 Identities=23% Similarity=0.400 Sum_probs=66.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++. +|+|||++||++++++ .||++++|++|+++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 215 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRIIVMEKGRIV 215 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 45778999888 78999999999999999999999999999986 4999999999999997 59999999988875
No 137
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.63 E-value=1.6e-15 Score=142.20 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=74.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++++||||++|||+..+..+++.|+++.++ |.|+|++||+++|+..+||+|++|++|+
T Consensus 133 ~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 133 GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 345779999988 7899999999999999999999999999998654 9999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 213 i~~~g~~~~ 221 (353)
T TIGR03265 213 IEQVGTPQE 221 (353)
T ss_pred EEEEcCHHH
Confidence 986554433
No 138
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=133.44 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=68.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|+++.+ ++|||++||+++++..+|||+++|++|++
T Consensus 146 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i 224 (251)
T PRK14270 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDL 224 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeE
Confidence 356789999987 689999999999999999999999999999865 69999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (251)
T PRK14270 225 I 225 (251)
T ss_pred E
Confidence 5
No 139
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.6e-15 Score=144.67 Aligned_cols=77 Identities=29% Similarity=0.436 Sum_probs=71.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|||||||+||||.++..+++.|.++.+ .|+|||++||+++++..+||++++|++|++
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 46789999988 789999999999999999999999999999864 599999999999999999999999999999
Q ss_pred eec
Q psy859 87 RKR 89 (247)
Q Consensus 87 ~~~ 89 (247)
+..
T Consensus 244 ~~~ 246 (400)
T PRK10070 244 VQV 246 (400)
T ss_pred Eec
Confidence 753
No 140
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2.2e-15 Score=131.93 Aligned_cols=76 Identities=24% Similarity=0.427 Sum_probs=69.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
..-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++ |.|||++||+++++..+||++++|++|+
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~ 208 (232)
T cd03300 129 SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 456889999988 7899999999999999999999999999998764 9999999999999999999999999888
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 209 ~~ 210 (232)
T cd03300 209 IQ 210 (232)
T ss_pred EE
Confidence 75
No 141
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.63 E-value=1.8e-15 Score=127.96 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=70.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.||+||+. +.+|++++|||||+|||+.++..+++.|.+++++ |.|+|++||+++++..+||++++|++|+
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~ 175 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGR 175 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 346788988888 7899999999999999999999999999998766 8999999999999999999999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 176 i~ 177 (180)
T cd03214 176 IV 177 (180)
T ss_pred EE
Confidence 86
No 142
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.7e-15 Score=130.31 Aligned_cols=75 Identities=31% Similarity=0.643 Sum_probs=69.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++ +.|||++||+++++..+|||+++|++|++
T Consensus 129 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 129 GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 346789999988 789999999999999999999999999999865 59999999999999999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 208 ~ 208 (211)
T cd03264 208 V 208 (211)
T ss_pred E
Confidence 6
No 143
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2e-15 Score=136.52 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=68.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
..-|.|||||+. +.+|++|||||||+|||+.++..++++|+++.++ |.||+++||++++++. ||++++|++|+
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~ 217 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGE 217 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCE
Confidence 356789999988 7899999999999999999999999999999765 9999999999999985 99999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 218 i~ 219 (279)
T PRK13635 218 IL 219 (279)
T ss_pred EE
Confidence 75
No 144
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.63 E-value=1.9e-15 Score=134.60 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|++|||||||+|||+.++..++++|.++.+ .|.|||++||+++++..+||++++|++|+++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 4678999988 789999999999999999999999999999865 4999999999999999999999999987775
No 145
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.2e-15 Score=133.00 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=68.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|++++|||||+|||+.++..++++|+++. +|+|||++||+++++..+||++++|++|+++
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEE
Confidence 46789999988 78999999999999999999999999999985 4899999999999999999999999988775
No 146
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.63 E-value=2.1e-15 Score=133.40 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=69.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..++++|+++.++ |.|+|++||+++++..+||++++|++|+
T Consensus 145 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 145 AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGR 224 (252)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 346789999988 7899999999999999999999999999998664 9999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 225 i~ 226 (252)
T TIGR03005 225 IV 226 (252)
T ss_pred EE
Confidence 75
No 147
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=134.67 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=68.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|.++.+ .|.|||++||+++++..+||++++|++|++
T Consensus 143 ~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 222 (265)
T PRK10253 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKI 222 (265)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 34668888888 789999999999999999999999999999876 499999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 223 ~ 223 (265)
T PRK10253 223 V 223 (265)
T ss_pred E
Confidence 5
No 148
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=133.09 Aligned_cols=75 Identities=19% Similarity=0.397 Sum_probs=68.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|.++. +|+|||++||+++++..+||++++|++|++
T Consensus 148 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 148 FELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 356789999988 68999999999999999999999999999985 489999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 227 ~ 227 (251)
T PRK14244 227 V 227 (251)
T ss_pred E
Confidence 5
No 149
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.62 E-value=1e-15 Score=137.19 Aligned_cols=74 Identities=30% Similarity=0.515 Sum_probs=66.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|++||||||||.||+..+..+|+++.++++ .|.|+|++||++.-++.+||||++|++|+++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEE
Confidence 5779999998 789999999999999999999999999999964 5999999999999999988887777777665
No 150
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.5e-15 Score=137.15 Aligned_cols=72 Identities=22% Similarity=0.420 Sum_probs=66.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-|.||+||+. +.+|++|+|||||+|+|+.++..|+++|.+++++|+||+++||+++.+...||+|+.|+++.
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 3568888887 78999999999999999999999999999998889999999999999999999999998643
No 151
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.62 E-value=2.4e-15 Score=129.32 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=70.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh-hcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA-LCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~-l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|++++|||||+|||+.++..++++|.+++++|.|||++||++++++. +||++++|++|++
T Consensus 104 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRI 183 (200)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEE
Confidence 46789988888 78999999999999999999999999999987779999999999999998 7999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 184 ~~ 185 (200)
T cd03217 184 VK 185 (200)
T ss_pred EE
Confidence 74
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.2e-15 Score=135.32 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=67.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|+++||||||+|||+.++..++++|.+++ +++|||++||+++++..+||++++|++|++
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~ 231 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEV 231 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEecccc
Confidence 46778999988 78999999999999999999999999999985 479999999999999999999999998654
No 153
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.62 E-value=2.7e-15 Score=132.02 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=69.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
..-|.||+||+. +.+|++++|||||+|||+.++..+++.|.+++++ |+|||++||+++++..+||++++|++|+
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~ 208 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGK 208 (237)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 456789999998 7899999999999999999999999999998765 8999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 209 i~ 210 (237)
T TIGR00968 209 IE 210 (237)
T ss_pred EE
Confidence 75
No 154
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.62 E-value=2e-15 Score=133.26 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=70.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL-CNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l-~drV~ii~~G~i~ 87 (247)
.|.|||||+. +.+|+++||||||+|||+.++..++++|++++++|.|||++||++++++.+ ||++++|++|+++
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 7889999988 789999999999999999999999999999877799999999999999987 9999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 232 ~ 232 (252)
T CHL00131 232 K 232 (252)
T ss_pred E
Confidence 4
No 155
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=7.5e-16 Score=142.92 Aligned_cols=73 Identities=29% Similarity=0.487 Sum_probs=65.9
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.||+||++ ..+|++|++|||+|.|||.-|.++.+.+.++.++ ++||+++||+++|+-++.|||++|++|+|+
T Consensus 166 SGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 166 SGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred cchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE
Confidence 668999998 7899999999999999999999999999999655 999999999999999988888888776665
No 156
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.62 E-value=2.2e-15 Score=132.63 Aligned_cols=76 Identities=32% Similarity=0.538 Sum_probs=70.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.+++.++++|.+++++ |.|||++||+++++..+||++++|++|+
T Consensus 152 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 457889999987 7899999999999999999999999999998654 8999999999999999999999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 232 i~ 233 (236)
T cd03267 232 LL 233 (236)
T ss_pred EE
Confidence 86
No 157
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3e-15 Score=132.06 Aligned_cols=74 Identities=28% Similarity=0.487 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..++++|.++.+ +.|||++||+++++..+||++++|++|+++
T Consensus 145 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 145 GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELV 223 (249)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 35668888888 789999999999999999999999999999865 699999999999999999999999988875
No 158
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.3e-15 Score=146.02 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=73.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.+++.++++|.+++++|+|||++||++++++.+||++++|++|+++
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 45778999988 7899999999999999999999999999999878999999999999999999999999999997
Q ss_pred ecccc
Q psy859 88 KRRNC 92 (247)
Q Consensus 88 ~~~~~ 92 (247)
+..+.
T Consensus 485 ~~~~~ 489 (506)
T PRK13549 485 GDLIN 489 (506)
T ss_pred EEecc
Confidence 54333
No 159
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.1e-15 Score=132.05 Aligned_cols=74 Identities=27% Similarity=0.448 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|.++.+ ++|||++||+++++..+||++++|++|+++
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELI 224 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 45778888888 789999999999999999999999999999864 799999999999999999999999988775
No 160
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.62 E-value=2.1e-15 Score=145.48 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=73.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||++ +.+|+++||||||+|||+.+++.++++|.+++++|.|||++||+++++..+||++++|++|++
T Consensus 134 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 356778999988 789999999999999999999999999999977799999999999999999999999999999
Q ss_pred eecccc
Q psy859 87 RKRRNC 92 (247)
Q Consensus 87 ~~~~~~ 92 (247)
+.....
T Consensus 214 ~~~~~~ 219 (490)
T PRK10938 214 AETGER 219 (490)
T ss_pred EEeCCH
Confidence 864433
No 161
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.1e-15 Score=141.09 Aligned_cols=78 Identities=26% Similarity=0.489 Sum_probs=71.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
|.|||||++ +.+|++|+.|||||.|||..-+.+.++|+++++ -|.||+++||.|+.+.++||||++|++|++++
T Consensus 143 SGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 143 SGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred CcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 679999999 789999999999999999999999999999965 59999999999999999999999999999986
Q ss_pred cccc
Q psy859 89 RRNC 92 (247)
Q Consensus 89 ~~~~ 92 (247)
+..-
T Consensus 223 ~G~v 226 (339)
T COG1135 223 EGTV 226 (339)
T ss_pred eccH
Confidence 4443
No 162
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.5e-15 Score=131.64 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=67.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|++++|||||+|||+.++..+++.|++++ +++|||++||+++++..+||++++|++|+++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 46778999887 78999999999999999999999999999985 4799999999999999999999999988875
No 163
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.62 E-value=2.4e-15 Score=130.85 Aligned_cols=74 Identities=22% Similarity=0.424 Sum_probs=68.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|++++++ |.|||++||++++++. ||++++|++|++
T Consensus 146 ~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i 224 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQL 224 (228)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEE
Confidence 45778999988 7899999999999999999999999999998654 8999999999999976 999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (228)
T PRK10584 225 Q 225 (228)
T ss_pred E
Confidence 6
No 164
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.6e-15 Score=131.89 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=68.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
...|.|||||++ +.+|+++||||||+|||+.++..++++|.++. +|.|||++||+++++..+||++++|++|++
T Consensus 146 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDL 224 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeE
Confidence 346789999988 78999999999999999999999999999984 689999999999999999999999988777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 225 ~ 225 (251)
T PRK14249 225 V 225 (251)
T ss_pred E
Confidence 5
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.3e-15 Score=133.93 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=68.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||++ +.+|++|||||||+|||+.++..++++|+++.+ +.|||++||+++++..+||++++|++|++
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 346779999988 789999999999999999999999999999854 78999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 241 ~ 241 (267)
T PRK14235 241 V 241 (267)
T ss_pred E
Confidence 5
No 166
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.5e-15 Score=132.96 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
...|.|||||+. +.+|+++||||||+|||+.++..+++.|++++ +|.|||++||+++++..+||++++|++|++
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 233 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 346789999988 78999999999999999999999999999985 479999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 234 ~ 234 (260)
T PRK10744 234 I 234 (260)
T ss_pred E
Confidence 5
No 167
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.4e-15 Score=132.13 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||++ +.+|+++||||||+|||+.++..++++|+++.+ ++|||++||+++++..+||++++|++|+++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 35778988887 789999999999999999999999999999865 689999999999999999999999888775
No 168
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.3e-15 Score=127.09 Aligned_cols=72 Identities=36% Similarity=0.606 Sum_probs=67.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-|.|||||+. +.+|++++|||||+|||+.++..++++|++++++ |.|+|++||++++++.+||++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 5778999987 7899999999999999999999999999999776 8999999999999999999999999884
No 169
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.4e-15 Score=133.66 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=66.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|.++.+ +.|||++||+++++..+||++++|++|.+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccc
Confidence 46778989888 789999999999999999999999999999865 58999999999999999999999995543
No 170
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.5e-15 Score=145.74 Aligned_cols=85 Identities=20% Similarity=0.297 Sum_probs=77.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..++++|.+++++|.|||++||+++++..+||++++|++|++
T Consensus 142 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 142 GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 346779999988 789999999999999999999999999999977799999999999999999999999999999
Q ss_pred eeccccchhh
Q psy859 87 RKRRNCLSFR 96 (247)
Q Consensus 87 ~~~~~~~~~~ 96 (247)
+...+..++.
T Consensus 222 ~~~~~~~~~~ 231 (506)
T PRK13549 222 IGTRPAAGMT 231 (506)
T ss_pred eeecccccCC
Confidence 8766666543
No 171
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=3.7e-15 Score=130.96 Aligned_cols=74 Identities=27% Similarity=0.439 Sum_probs=67.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||+||+. +.+|++++|||||+|||+.++..+++.++++..+ |+||+++||+++++..+||++++|++|+++
T Consensus 130 LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 4678888888 6899999999999999999999999999998654 999999999999999999999999887775
No 172
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.7e-15 Score=133.01 Aligned_cols=72 Identities=21% Similarity=0.388 Sum_probs=66.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
-..|.|||||+. +.+|++++|||||+|||+.++..+++.|++++. .|.|||++||+++++..+||+|++|++
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 356789999888 789999999999999999999999999999864 599999999999999999999999997
No 173
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=131.54 Aligned_cols=75 Identities=28% Similarity=0.371 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
...|.|||||++ +.+|++++|||||+|||+.++..+++.|.++.. |+|||++||+++++..+||++++|++|++
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i 219 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGEL 219 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEE
Confidence 346789999988 789999999999999999999999999999854 89999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 220 ~ 220 (246)
T PRK14269 220 I 220 (246)
T ss_pred E
Confidence 5
No 174
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=2.5e-15 Score=145.56 Aligned_cols=84 Identities=20% Similarity=0.405 Sum_probs=76.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+|||+.++..++++|+++++.|.|||++||++++++.+||+|++|++|++
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 140 GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219 (501)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 456789999988 789999999999999999999999999999977799999999999999999999999999999
Q ss_pred eeccccchh
Q psy859 87 RKRRNCLSF 95 (247)
Q Consensus 87 ~~~~~~~~~ 95 (247)
+......+.
T Consensus 220 ~~~~~~~~~ 228 (501)
T PRK10762 220 IAEREVADL 228 (501)
T ss_pred EEecCcCcC
Confidence 876555544
No 175
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=145.41 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=75.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|++++++|+|||++||+++++..+||++++|++|+++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 45778999988 7899999999999999999999999999999877999999999999999999999999999998
Q ss_pred eccccchh
Q psy859 88 KRRNCLSF 95 (247)
Q Consensus 88 ~~~~~~~~ 95 (247)
...+..++
T Consensus 225 ~~g~~~~~ 232 (510)
T PRK09700 225 CSGMVSDV 232 (510)
T ss_pred eecchhhC
Confidence 65555444
No 176
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.61 E-value=3.4e-15 Score=145.14 Aligned_cols=76 Identities=28% Similarity=0.485 Sum_probs=69.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++++..+||++++|++|+
T Consensus 426 ~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGK 505 (520)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 456889999998 7899999999999999999999999999998654 9999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 506 i~ 507 (520)
T TIGR03269 506 IV 507 (520)
T ss_pred EE
Confidence 75
No 177
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.9e-15 Score=133.87 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=67.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.+ ++|||++||+++++..+||++++|++|+++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 35778999888 789999999999999999999999999999865 799999999999999999999999988875
No 178
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.61 E-value=3e-15 Score=134.33 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=70.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++..+||+|++|++|++
T Consensus 133 ~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45778999888 789999999999999999999999999999854 589999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
+.
T Consensus 213 ~~ 214 (257)
T PRK11247 213 GL 214 (257)
T ss_pred Ee
Confidence 74
No 179
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.61 E-value=3.4e-15 Score=127.95 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=69.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|++++|||||+|||+.+++.++++|.++.++|+|+|++||+++ ++..+||++++|++|++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 46789999988 7899999999999999999999999999998777999999999996 79999999999999998
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 191 ~ 191 (194)
T cd03213 191 I 191 (194)
T ss_pred E
Confidence 6
No 180
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.3e-15 Score=133.51 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||++ +.+|+++||||||+|||+.++..++++|.++++ +.|||++||+++++..+||++++|++|++
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 346779999988 789999999999999999999999999999865 79999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 246 ~ 246 (272)
T PRK14236 246 V 246 (272)
T ss_pred E
Confidence 5
No 181
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.61 E-value=3e-15 Score=130.49 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=70.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH-HHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM-DECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l-~e~e~l~drV~ii~~G~ 85 (247)
-..|.||+||+. +.+|++++|||||+|||+.++..+++++.++.++|.|+|++||++ +++..+||++++|++|+
T Consensus 142 ~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 142 KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 356778999887 689999999999999999999999999999877799999999999 69999999999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 222 i~ 223 (226)
T cd03234 222 IV 223 (226)
T ss_pred EE
Confidence 86
No 182
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.1e-15 Score=144.95 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=73.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+|||+.+++.++++|.++++.|.|||++||++++++.+||++++|++|++
T Consensus 395 ~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 395 MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474 (501)
T ss_pred ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEE
Confidence 355779999988 789999999999999999999999999999988899999999999999999999999999999
Q ss_pred eecc
Q psy859 87 RKRR 90 (247)
Q Consensus 87 ~~~~ 90 (247)
++..
T Consensus 475 ~~~~ 478 (501)
T PRK11288 475 AGEL 478 (501)
T ss_pred EEEE
Confidence 8543
No 183
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.61 E-value=3.4e-15 Score=145.56 Aligned_cols=75 Identities=31% Similarity=0.486 Sum_probs=68.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+.+++.++++|++++++ |+|||++||+++++..+||++++|++|++
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 45778999888 7899999999999999999999999999999764 89999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 505 ~ 505 (529)
T PRK15134 505 V 505 (529)
T ss_pred E
Confidence 5
No 184
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=3.7e-15 Score=133.05 Aligned_cols=76 Identities=25% Similarity=0.467 Sum_probs=69.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEe--CC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR--GN 84 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~--~G 84 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++. +.|+|||++||+++++..+||++++|+ +|
T Consensus 128 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G 207 (255)
T PRK11248 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPG 207 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCc
Confidence 45779999888 78999999999999999999999999999984 459999999999999999999999998 59
Q ss_pred EEee
Q psy859 85 ELRK 88 (247)
Q Consensus 85 ~i~~ 88 (247)
+++.
T Consensus 208 ~i~~ 211 (255)
T PRK11248 208 RVVE 211 (255)
T ss_pred EEEE
Confidence 9874
No 185
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.3e-15 Score=130.97 Aligned_cols=74 Identities=20% Similarity=0.378 Sum_probs=67.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ ++|||++||+++++..+||++++|++|+++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 46778888888 789999999999999999999999999999865 699999999999999999999999987775
No 186
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=5e-15 Score=129.28 Aligned_cols=74 Identities=19% Similarity=0.418 Sum_probs=67.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ |+|||++||++++++. ||++++|++|++
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i 213 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRI 213 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEE
Confidence 356789999988 789999999999999999999999999999876 9999999999999976 999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 214 ~ 214 (236)
T cd03253 214 V 214 (236)
T ss_pred E
Confidence 5
No 187
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=3.5e-15 Score=145.19 Aligned_cols=84 Identities=25% Similarity=0.462 Sum_probs=75.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|++|||||||+|||+.++..++++|++++++|+|||++||+++++..+||++++|++|++
T Consensus 139 ~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218 (510)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 456889999998 789999999999999999999999999999977899999999999999999999999999999
Q ss_pred eeccccchh
Q psy859 87 RKRRNCLSF 95 (247)
Q Consensus 87 ~~~~~~~~~ 95 (247)
+...+..++
T Consensus 219 ~~~g~~~~~ 227 (510)
T PRK15439 219 ALSGKTADL 227 (510)
T ss_pred EEecChHHc
Confidence 865444443
No 188
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=3.9e-15 Score=133.40 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=67.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..+++.++++.++ |+|||++||+++++.. ||++++|++|++
T Consensus 142 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i 220 (269)
T PRK13648 142 ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTV 220 (269)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEE
Confidence 46779999988 7899999999999999999999999999998654 8999999999999986 999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 221 ~ 221 (269)
T PRK13648 221 Y 221 (269)
T ss_pred E
Confidence 5
No 189
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.60 E-value=3.6e-15 Score=144.21 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=75.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|+++++.|.|||++||+++++..+||+|++|++|+++
T Consensus 141 ~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 141 DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 46789999988 7899999999999999999999999999999878999999999999999999999999999998
Q ss_pred eccccchh
Q psy859 88 KRRNCLSF 95 (247)
Q Consensus 88 ~~~~~~~~ 95 (247)
.......+
T Consensus 221 ~~~~~~~~ 228 (500)
T TIGR02633 221 ATKDMSTM 228 (500)
T ss_pred eecCcccC
Confidence 76555443
No 190
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.6e-15 Score=130.48 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..+++.|.++. ++.|||++||+++++..+||++++|++|+++
T Consensus 147 ~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEEEEECCEEE
Confidence 45678888888 78999999999999999999999999999985 4799999999999999999999999988875
No 191
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=5.1e-15 Score=133.95 Aligned_cols=74 Identities=20% Similarity=0.424 Sum_probs=66.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.++ |+|||++||++++++ .||++++|++|++
T Consensus 143 ~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i 221 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL 221 (282)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE
Confidence 45678888888 7899999999999999999999999999998654 999999999999996 6999999998777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 222 ~ 222 (282)
T PRK13640 222 L 222 (282)
T ss_pred E
Confidence 5
No 192
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.9e-15 Score=133.95 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=68.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..-|.|||||+. +.+|++|||||||+|||+.++..+++.|++++. +.|||++||+++++..+||++++|++|++
T Consensus 181 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 346778999988 789999999999999999999999999999864 68999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 260 ~ 260 (286)
T PRK14275 260 V 260 (286)
T ss_pred E
Confidence 5
No 193
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.60 E-value=4.1e-15 Score=144.14 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=74.4
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-.-|.|||||+. +.+|++|||||||+|||+.++..++++|++++++|.|||++||+++++..+||++++|++|+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 3456889999988 78999999999999999999999999999997779999999999999999999999999999
Q ss_pred Eeecccc
Q psy859 86 LRKRRNC 92 (247)
Q Consensus 86 i~~~~~~ 92 (247)
+++..+.
T Consensus 473 i~~~~~~ 479 (501)
T PRK10762 473 ISGEFTR 479 (501)
T ss_pred EEEEecc
Confidence 9754433
No 194
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.60 E-value=4.4e-15 Score=144.80 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=73.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+||||.++..++++|++++++ |+|||++||+++++..+||||++|++|++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 45778889888 7899999999999999999999999999998765 99999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+......+
T Consensus 236 ~~~g~~~~ 243 (529)
T PRK15134 236 VEQNRAAT 243 (529)
T ss_pred EEeCCHHH
Confidence 86544433
No 195
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.60 E-value=5.5e-15 Score=139.85 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=71.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|++++||||++|||+..+..+++.|+++.+ .|.|+|++||+++|+..+||+|++|++|+++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 4678888888 789999999999999999999999999999865 4999999999999999999999999999998
Q ss_pred ecccc
Q psy859 88 KRRNC 92 (247)
Q Consensus 88 ~~~~~ 92 (247)
...++
T Consensus 225 ~~g~~ 229 (375)
T PRK09452 225 QDGTP 229 (375)
T ss_pred EEcCH
Confidence 54433
No 196
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=2.7e-15 Score=145.89 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=72.7
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-..|.|||||+. +.+|++|||||||+|||+.+++.++++|++++++|.|||++||++++++.+||++++|++|+
T Consensus 401 ~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 3457889999988 68999999999999999999999999999998789999999999999999999999999999
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
+++
T Consensus 481 i~~ 483 (510)
T PRK15439 481 ISG 483 (510)
T ss_pred EEE
Confidence 975
No 197
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.1e-15 Score=143.66 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=75.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|+++++.|.|||++||+++++..+||++++|++|+++
T Consensus 134 ~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 134 TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 35678999988 7899999999999999999999999999999878999999999999999999999999999998
Q ss_pred eccccchh
Q psy859 88 KRRNCLSF 95 (247)
Q Consensus 88 ~~~~~~~~ 95 (247)
...+....
T Consensus 214 ~~~~~~~~ 221 (491)
T PRK10982 214 ATQPLAGL 221 (491)
T ss_pred eecChhhC
Confidence 76665554
No 198
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=5.3e-15 Score=139.99 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=73.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|+|||||+|||+..+..+++.++++.+ .|.|+|++||+++++..+||++++|++|+
T Consensus 148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCE
Confidence 356789999998 789999999999999999999999999998754 59999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 228 i~~~g~~~~ 236 (377)
T PRK11607 228 FVQIGEPEE 236 (377)
T ss_pred EEEEcCHHH
Confidence 985444433
No 199
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=4.2e-15 Score=127.08 Aligned_cols=76 Identities=26% Similarity=0.408 Sum_probs=69.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEEeC-CE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIMRG-NE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii~~-G~ 85 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.++++++.|+|||++||+++ ++...||++++|++ |+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 45778888887 7899999999999999999999999999998777999999999998 58899999999998 99
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
+++
T Consensus 188 i~~ 190 (192)
T cd03232 188 TVY 190 (192)
T ss_pred EEe
Confidence 863
No 200
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5e-15 Score=133.09 Aligned_cols=74 Identities=18% Similarity=0.382 Sum_probs=68.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|||||+. +.+|++++|||||+|||+.+++.++++|.+++++|+|||++||+++++..+||+++++ +|+++.
T Consensus 143 LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 5778999887 7899999999999999999999999999999777999999999999999999999877 899874
No 201
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=4.9e-15 Score=129.71 Aligned_cols=75 Identities=23% Similarity=0.437 Sum_probs=68.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ .|+|||++||++++++.. +++++|++|++
T Consensus 145 ~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i 223 (233)
T PRK11629 145 ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRL 223 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEE
Confidence 35678999888 789999999999999999999999999999865 599999999999999985 69999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 224 ~~ 225 (233)
T PRK11629 224 TA 225 (233)
T ss_pred EE
Confidence 74
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.60 E-value=5.3e-15 Score=132.81 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=69.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||++ +.+|++|||||||+|||+.++..++++|.+++++ |.|+|++||+++++..+||++++|++|+
T Consensus 150 ~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~ 229 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229 (268)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 346889999988 7899999999999999999999999999998654 8999999999999999999999998877
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 230 i~ 231 (268)
T PRK10419 230 IV 231 (268)
T ss_pred Ee
Confidence 75
No 203
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=9e-15 Score=132.43 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=68.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|+|||+. +.+|++|+|||||+.||+..+.++++++++++ ++|+||+++.|+++.|.+.||++++|++|+++
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 3558999987 78999999999999999999999999999997 55999999999999999999999999988876
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 219 a 219 (258)
T COG1120 219 A 219 (258)
T ss_pred e
Confidence 3
No 204
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.60 E-value=4e-15 Score=128.63 Aligned_cols=73 Identities=30% Similarity=0.459 Sum_probs=67.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ ++|||++||+++++ .+||++++|++|+++
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence 56778999888 789999999999999999999999999999865 48999999999987 599999999999986
No 205
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.9e-15 Score=147.75 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=69.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+..+..++++|++++++ |.|||++||+++++..+||+|++|++|++
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45779999998 7899999999999999999999999999999765 99999999999999999999999998888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 543 v~ 544 (623)
T PRK10261 543 VE 544 (623)
T ss_pred EE
Confidence 63
No 206
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.6e-15 Score=144.03 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=71.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+++.+.++.+.|.|||++||++++++.+|||+++|++|+++
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 45668888888 7899999999999999999999999999999878999999999999999999999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 471 ~ 471 (491)
T PRK10982 471 G 471 (491)
T ss_pred E
Confidence 4
No 207
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.59 E-value=4.1e-15 Score=143.82 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=71.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.+++.+++++.+++++|.|||++||+++++..+||++++|++|+++
T Consensus 403 ~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 56789999988 6899999999999999999999999999999878999999999999999999999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 483 ~ 483 (500)
T TIGR02633 483 G 483 (500)
T ss_pred E
Confidence 4
No 208
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=6.4e-15 Score=132.84 Aligned_cols=74 Identities=26% Similarity=0.422 Sum_probs=66.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..++++|.++.++ |.|||++||+++++. .||++++|++|++
T Consensus 140 ~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i 218 (277)
T PRK13642 140 RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEI 218 (277)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE
Confidence 35678888888 7899999999999999999999999999998765 999999999999997 5999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 219 ~ 219 (277)
T PRK13642 219 I 219 (277)
T ss_pred E
Confidence 5
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.5e-15 Score=147.99 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=71.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+++++++++++ |+|||++||+++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 46789999988 7899999999999999999999999999999754 99999999999999999999999999999
Q ss_pred eec
Q psy859 87 RKR 89 (247)
Q Consensus 87 ~~~ 89 (247)
++.
T Consensus 248 ~~~ 250 (623)
T PRK10261 248 VET 250 (623)
T ss_pred ccc
Confidence 853
No 210
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.7e-15 Score=143.85 Aligned_cols=76 Identities=22% Similarity=0.415 Sum_probs=71.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|++++++|.|||++||+++++..+||++++|++|+++
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 46779999988 7899999999999999999999999999999778999999999999999999999999999987
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 489 ~ 489 (510)
T PRK09700 489 Q 489 (510)
T ss_pred E
Confidence 4
No 211
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.59 E-value=7.4e-15 Score=132.77 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=68.6
Q ss_pred hhhHHHHHHhh-----C---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCE
Q psy859 13 ACILIQRQSWG-----I---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 13 ~~~~~~r~~~~-----~---------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~dr 77 (247)
.-|.|||||+. + .+|+++||||||+|||+.++..++++++++.++ |+|||++||+++++..+||+
T Consensus 145 ~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 145 TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 45778999888 3 499999999999999999999999999998765 99999999999999999999
Q ss_pred EEEEeCCEEe
Q psy859 78 LTIMRGNELR 87 (247)
Q Consensus 78 V~ii~~G~i~ 87 (247)
+++|++|+++
T Consensus 225 i~~l~~G~i~ 234 (272)
T PRK13547 225 IAMLADGAIV 234 (272)
T ss_pred EEEEECCeEE
Confidence 9999988876
No 212
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8.8e-15 Score=131.06 Aligned_cols=69 Identities=23% Similarity=0.419 Sum_probs=63.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++ +++|||++||+++++..+||++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 35778988888 78999999999999999999999999999985 47999999999999999999999996
No 213
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.59 E-value=6.9e-15 Score=143.00 Aligned_cols=82 Identities=26% Similarity=0.302 Sum_probs=73.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+.++.+++++|+++.+ .|+|||++||+++++..+||++++|++|++
T Consensus 168 ~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i 247 (520)
T TIGR03269 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247 (520)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 45778999888 789999999999999999999999999999855 599999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+...+..+
T Consensus 248 ~~~g~~~~ 255 (520)
T TIGR03269 248 KEEGTPDE 255 (520)
T ss_pred eeecCHHH
Confidence 86433333
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=5.2e-15 Score=124.14 Aligned_cols=70 Identities=24% Similarity=0.489 Sum_probs=64.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-|.|||||+. +.+|++++|||||+|||+.++..+++++.+++ +++|||++||++++++. ||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 5779999987 78999999999999999999999999999985 47999999999999988 99999999884
No 215
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1e-14 Score=128.92 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=67.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.+ +.|||++||+++++..+||+|++|++|+++
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLI 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 45778999888 789999999999999999999999999999865 589999999999999999999999988876
No 216
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=8e-15 Score=131.71 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=68.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-..|.|||||+. +.+|++++|||||+|||+.+++.+++.|++++++ |+|||++||+++++. .||++++|++|+
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~ 219 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGK 219 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCE
Confidence 356789999998 7899999999999999999999999999998765 599999999999997 799999999888
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 220 i~ 221 (271)
T PRK13632 220 LI 221 (271)
T ss_pred EE
Confidence 75
No 217
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.58 E-value=9.4e-15 Score=143.78 Aligned_cols=80 Identities=15% Similarity=0.301 Sum_probs=72.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||++ +.+|++|||||||+|||+.++..+++.|.+++++|.|||++||+++++..+||++++|++|+++
T Consensus 143 ~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 143 TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 46779999987 7899999999999999999999999999998777999999999999999999999999999987
Q ss_pred ecccc
Q psy859 88 KRRNC 92 (247)
Q Consensus 88 ~~~~~ 92 (247)
...+.
T Consensus 223 ~~G~~ 227 (549)
T PRK13545 223 EYGDI 227 (549)
T ss_pred EECCH
Confidence 54433
No 218
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=130.43 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=67.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..++++|.++. ++.|||++||+++++..+||++++|++|+++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 45778999987 78999999999999999999999999999985 4799999999999999999999999987775
No 219
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=131.19 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=64.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
-|.|||||+. +.+|+++||||||+|||+.++..++++|.++++ +.|||++||+++++..+||++++|++|
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTE 236 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecc
Confidence 5778888888 789999999999999999999999999999864 799999999999999999999999843
No 220
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.58 E-value=9.5e-15 Score=123.15 Aligned_cols=72 Identities=24% Similarity=0.506 Sum_probs=66.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++++|||||+|||+.++..+++.+.++. +|.|||++||++++++ .||++++|++|+++
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~ 175 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HMDKILFLENGKII 175 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 4668888887 79999999999999999999999999999985 5899999999999997 59999999999986
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=129.43 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=64.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..|.|||||+. +.+|+++||||||+|||+.++..+++.|.++++ ++|||++||+++++..+||++++|+.
T Consensus 150 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 46778988888 789999999999999999999999999999854 69999999999999999999999973
No 222
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.58 E-value=9.4e-15 Score=125.01 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=67.1
Q ss_pred hhhhHHHHHHhh-----CCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 12 PACILIQRQSWG-----IGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~--P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
-..|.+||||+. +.+ |+++||||||+|||+..+..+++.+++++++|+|||++||+++++. .||++++|++|
T Consensus 86 ~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g 164 (176)
T cd03238 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPG 164 (176)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCC
Confidence 456778988888 567 9999999999999999999999999998778999999999999985 69999999887
Q ss_pred EEe
Q psy859 85 ELR 87 (247)
Q Consensus 85 ~i~ 87 (247)
+..
T Consensus 165 ~~~ 167 (176)
T cd03238 165 SGK 167 (176)
T ss_pred CCC
Confidence 653
No 223
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=129.56 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=69.0
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-.-|.|||||+. +.+|++++|||||+|||+.++..+++.|.++++ +.|||++||+++++..+||++++|++|+
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~ 229 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGE 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 3456889999988 789999999999999999999999999999854 7999999999999999999999999887
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 230 i~ 231 (257)
T PRK14246 230 LV 231 (257)
T ss_pred EE
Confidence 75
No 224
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.3e-14 Score=128.01 Aligned_cols=75 Identities=21% Similarity=0.373 Sum_probs=67.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|++++|||||+|||+.++..++++|++++ +|.|||++||+++++..+||++++|++|++
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 346779999988 78999999999999999999999999999985 489999999999999999999999988777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 224 ~ 224 (250)
T PRK14266 224 I 224 (250)
T ss_pred E
Confidence 5
No 225
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=9e-15 Score=141.75 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=73.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++.|+|||++||+++++..+||++++|++|++
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 356789999988 789999999999999999999999999999977799999999999999999999999999999
Q ss_pred eecc
Q psy859 87 RKRR 90 (247)
Q Consensus 87 ~~~~ 90 (247)
+...
T Consensus 219 ~~~~ 222 (501)
T PRK11288 219 VATF 222 (501)
T ss_pred Eeec
Confidence 7543
No 226
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.8e-14 Score=130.14 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=67.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|+++||||||+|||+.+++.+.+.|.++++ ++|||++||+++++..+||++++|++|+++
T Consensus 163 ~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 46779999988 789999999999999999999999999999865 589999999999999999999999988775
No 227
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.57 E-value=1.1e-14 Score=129.93 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=68.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++..+||++++|++ +
T Consensus 119 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~ 197 (251)
T PRK09544 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-H 197 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-c
Confidence 345778999888 7899999999999999999999999999998765 89999999999999999999999964 6
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
++.
T Consensus 198 i~~ 200 (251)
T PRK09544 198 ICC 200 (251)
T ss_pred eEe
Confidence 764
No 228
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=128.30 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=67.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..-|.||+||+. +.+|++++|||||+|||+.++..+++.|.+++. +.|||++||+++++..+||++++|++|++
T Consensus 160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i 238 (265)
T PRK14252 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGEL 238 (265)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 345678888888 789999999999999999999999999999864 79999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 239 ~ 239 (265)
T PRK14252 239 I 239 (265)
T ss_pred E
Confidence 5
No 229
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=134.16 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=68.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..-|.|||||+. +.+|++++|||||+|||+.+...++++|+++.+ ++|||++||+++++..+||||++|++|++
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i 302 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWI 302 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 345779999988 789999999999999999999999999999864 79999999999999999999999998777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 303 ~ 303 (329)
T PRK14257 303 E 303 (329)
T ss_pred E
Confidence 5
No 230
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.56 E-value=1.8e-14 Score=123.80 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=67.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..+++.|+++. +|+|+|++||+++++.. ||++++|++|+++
T Consensus 125 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d~v~~l~~g~i~ 202 (207)
T cd03369 125 NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YDKILVMDAGEVK 202 (207)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCEEE
Confidence 45678888888 78999999999999999999999999999984 59999999999999987 9999999999986
No 231
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.55 E-value=1.9e-14 Score=126.48 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE----
Q psy859 13 ACILIQRQSWG-----IGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM---- 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii---- 81 (247)
.-|.|||||+. +.+| +++||||||+|||+..+..+++.+++++++|.|||++||++++++ +||++++|
T Consensus 137 ~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~ 215 (226)
T cd03270 137 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGA 215 (226)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCc
Confidence 35778888887 5576 699999999999999999999999998778999999999999985 89999999
Q ss_pred --eCCEEee
Q psy859 82 --RGNELRK 88 (247)
Q Consensus 82 --~~G~i~~ 88 (247)
++|+|++
T Consensus 216 ~~~~G~iv~ 224 (226)
T cd03270 216 GVHGGEIVA 224 (226)
T ss_pred cccCCEEEe
Confidence 9999973
No 232
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.55 E-value=3e-14 Score=124.12 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=65.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.+|.|||||++ +++|+++||||||+++|+.+++.+++.+.+.. +++|+|++||++++++.+||++++|++|++
T Consensus 103 ~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i 181 (213)
T PRK15177 103 SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-QQKGLIVLTHNPRLIKEHCHAFGVLLHGKI 181 (213)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-hCCcEEEEECCHHHHHHhcCeeEEEECCeE
Confidence 357889999987 78999999999999999999999999886543 347899999999999999999999987776
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 182 ~ 182 (213)
T PRK15177 182 T 182 (213)
T ss_pred E
Confidence 5
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.55 E-value=1.5e-14 Score=125.67 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=65.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.++++.+ +.|||++||++++++. ||++++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 34778999888 789999999999999999999999999999854 6999999999999976 999999999874
No 234
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=3.1e-14 Score=129.31 Aligned_cols=74 Identities=22% Similarity=0.477 Sum_probs=66.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE-EEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLT-IMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~-ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++++..+|||++ +|++|++
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i 258 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGEL 258 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEE
Confidence 56778999988 789999999999999999999999999999865 4899999999999999999975 5687777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 259 ~ 259 (285)
T PRK14254 259 V 259 (285)
T ss_pred E
Confidence 5
No 235
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2.6e-14 Score=123.28 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=66.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEE-EcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVL-TSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIll-sSH~l~e~e~l~drV~ii~~G~ 85 (247)
..|.|||||+. +++|+++||||||+|||+.+++.+++++.++.++ +.|+++ ++|.++++..+||++++|++|+
T Consensus 118 ~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~ 197 (202)
T cd03233 118 GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197 (202)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCE
Confidence 46889999988 7899999999999999999999999999998654 666554 6677899999999999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 198 i~ 199 (202)
T cd03233 198 QI 199 (202)
T ss_pred EE
Confidence 86
No 236
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.55 E-value=2.3e-14 Score=127.70 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=68.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.+.++. .|.|||++||+++++.. ||++++|++|+++
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~-~dri~~l~~G~i~ 233 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD-ADLVLVLSRGILV 233 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh-CCEEEEEECCEEE
Confidence 35678888887 78999999999999999999999999998874 58999999999999986 9999999999998
Q ss_pred ec
Q psy859 88 KR 89 (247)
Q Consensus 88 ~~ 89 (247)
..
T Consensus 234 ~~ 235 (257)
T cd03288 234 EC 235 (257)
T ss_pred Ee
Confidence 53
No 237
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.54 E-value=2.9e-14 Score=129.49 Aligned_cols=72 Identities=22% Similarity=0.452 Sum_probs=65.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++++|||||+|||+.+++.+.+.|+++. .|+|||++||+++++.. ||||++|++|+++
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~-~dri~vl~~G~i~ 215 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQRFLVIEENKVR 215 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh-CCEEEEecCCeEe
Confidence 5778999888 78999999999999999999999999999864 58999999999999875 9999999987775
No 238
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=2.5e-14 Score=123.75 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=68.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++. ++.|||++||++++++. ||++++|++|++
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~~l~~g~~ 215 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIID-SDRILVLDKGRV 215 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEEEEECCeE
Confidence 456778999988 78999999999999999999999999999985 47899999999999986 999999999998
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 216 ~~ 217 (221)
T cd03244 216 VE 217 (221)
T ss_pred Ee
Confidence 63
No 239
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=2.7e-14 Score=127.38 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=66.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..++++|+++.+ .|+|||++||+++++..+||++++|+++.
T Consensus 115 ~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 35778999888 789999999999999999999999999999865 48999999999999999999999997543
No 240
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.53 E-value=3.2e-14 Score=117.00 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=63.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-|.||+||+. +.+|++++|||||+|||+.++..+++.++++ +.|++++||+++++..+||++++|++|+
T Consensus 71 lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 4678888887 7899999999999999999999999999876 4799999999999999999999999885
No 241
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=4.6e-14 Score=129.31 Aligned_cols=74 Identities=23% Similarity=0.465 Sum_probs=66.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE-EEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL-TIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV-~ii~~G~i 86 (247)
..|.|||||+. +.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++..+||++ ++|++|++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 46778988888 789999999999999999999999999999865 589999999999999999996 46787777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 279 ~ 279 (305)
T PRK14264 279 V 279 (305)
T ss_pred E
Confidence 5
No 242
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=4e-14 Score=121.25 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=67.3
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G-~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-|.|||||+. +.+|++++|||||+|||+..+..+++.+.++.+++ .|||++||+++++..+||++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 6889999888 78999999999999999999999999999987665 9999999999999999999999997754
No 243
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.53 E-value=4.5e-14 Score=122.63 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=66.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..+++.|.++++ .|+|||++||+++. ..+||+|++|++|++
T Consensus 141 ~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 141 NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 45778999888 789999999999999999999999999999865 59999999999985 579999999999986
No 244
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=5.6e-14 Score=115.89 Aligned_cols=72 Identities=32% Similarity=0.586 Sum_probs=66.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-|.||+||+. +.+|++++|||||+|||+.++..+++.+.++.+.++|++++||++++++.+||++++|++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 4668888877 68999999999999999999999999999987668999999999999999999999999874
No 245
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.52 E-value=3.5e-14 Score=139.45 Aligned_cols=75 Identities=24% Similarity=0.381 Sum_probs=69.3
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|++|++||||+.|||..+..+.++|++++++ |.|++++||+|+.++.+||||++|++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 4779999998 7899999999999999999999999999999765 999999999999999999999999988876
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 510 E 510 (539)
T COG1123 510 E 510 (539)
T ss_pred E
Confidence 3
No 246
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.7e-14 Score=127.45 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=66.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
-|.|||||++ +.+|++|+||||++.||..+|..+.+.+.++ .+.++||+++||+++||-.++|||++|..+
T Consensus 131 LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 4679999998 7999999999999999999999999999887 566999999999999999999999999983
No 247
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.52 E-value=4.7e-14 Score=122.35 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=65.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
.-|.|||||+. +.+|++++|||||+|||+.+++.+++.+.+++++|.|+|++||+++++..+||++++++.
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 45678888888 789999999999999999999999999999877899999999999999999999999873
No 248
>PLN03211 ABC transporter G-25; Provisional
Probab=99.52 E-value=3.9e-14 Score=142.57 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=71.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|+++||||||+|||+.++..+.+.+++++++|+|||++||+++ ++..+||++++|++|+++
T Consensus 207 LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred cChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 5778999888 7899999999999999999999999999999878999999999998 689999999999999998
Q ss_pred ecccc
Q psy859 88 KRRNC 92 (247)
Q Consensus 88 ~~~~~ 92 (247)
+..+.
T Consensus 287 ~~G~~ 291 (659)
T PLN03211 287 FFGKG 291 (659)
T ss_pred EECCH
Confidence 54433
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.50 E-value=3.9e-14 Score=136.69 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=68.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEcCCHHHHHh-hcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG-QSIVLTSHSMDECEA-LCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G-~TIllsSH~l~e~e~-l~drV~ii~~G~ 85 (247)
.-|.|||||+. +.+|++|||||||+|||+.+++.++++|.+++++| .|||++||+++++.. +||++++|++|+
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~ 480 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGD 480 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCc
Confidence 45778999887 78999999999999999999999999999997665 579999999999987 699999999999
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
+++
T Consensus 481 i~~ 483 (490)
T PRK10938 481 IYR 483 (490)
T ss_pred eEE
Confidence 863
No 250
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.50 E-value=5.9e-14 Score=121.81 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=64.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.-|.|||||+. +.+|++++|||||+|||+.+++.+++.|++++++|.|||++||+++++..+||+++.+
T Consensus 149 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 45778888888 7899999999999999999999999999998777999999999999999999999876
No 251
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.50 E-value=6.1e-14 Score=122.14 Aligned_cols=80 Identities=21% Similarity=0.423 Sum_probs=72.6
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
|.|||||++ +.+-++++||||++.|||.-|.++..++.++. +++.|++++||..+++.+++++++++++|+|.+
T Consensus 131 SGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred CchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 568888888 78899999999999999999999999999986 569999999999999999999999999999987
Q ss_pred ccccch
Q psy859 89 RRNCLS 94 (247)
Q Consensus 89 ~~~~~~ 94 (247)
...+.+
T Consensus 211 ~g~~~~ 216 (231)
T COG3840 211 QGSTQE 216 (231)
T ss_pred eccHHH
Confidence 555544
No 252
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.50 E-value=7e-14 Score=119.53 Aligned_cols=69 Identities=25% Similarity=0.485 Sum_probs=62.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++.++|.|+|++||+++.++ +||++++|
T Consensus 133 ~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 133 YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 356789999988 7899999999999999999999999999998777999999999999775 79999875
No 253
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1e-13 Score=128.23 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=69.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +..|++|+||||+++||...|.++..-++++.++ |.|.+++||+.+|+.++||||++|++|+|.
T Consensus 138 LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 4679999998 6899999999999999999999999999998766 999999999999999999999999999885
No 254
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=8.9e-14 Score=135.69 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=67.9
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-..|.|||||+. +.+|++|||||||+|||+.++..+++.|.++ +.|||++||+++++..+||++++|++|+
T Consensus 436 ~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~ 512 (530)
T PRK15064 436 VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDG 512 (530)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 3456789999988 7899999999999999999999999999876 3599999999999999999999999999
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 513 i~ 514 (530)
T PRK15064 513 VV 514 (530)
T ss_pred EE
Confidence 97
No 255
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.49 E-value=8.5e-14 Score=119.38 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=65.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
..-|.|||||+. +.+|++++|||||+|||+.+++.+++ ++.++.+.|.|||++||+++++.. ||++++|++|+
T Consensus 126 ~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 126 INLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 346789999988 78999999999999999999999998 466665569999999999999998 99999999885
No 256
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=1e-13 Score=122.09 Aligned_cols=77 Identities=23% Similarity=0.477 Sum_probs=68.8
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
+..-|.|+|+|+- ..+|.+++||||++|+||.+...+.+++..++.+|..|+||-|+..|.-.+|||.++|.+|+
T Consensus 137 a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~ 216 (243)
T COG1137 137 AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGK 216 (243)
T ss_pred ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCe
Confidence 3344557777776 67999999999999999999999999999999999999999999999999999999998777
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
+.
T Consensus 217 vl 218 (243)
T COG1137 217 VL 218 (243)
T ss_pred EE
Confidence 64
No 257
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.49 E-value=9.1e-14 Score=121.41 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=65.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEe--C
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR--G 83 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~--~ 83 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++++.++.+ .|.|||++||++++++ .||++++|+ .
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~ 214 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHA 214 (225)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEeccc
Confidence 456788999888 789999999999999999999999999999865 4999999999999997 599999995 4
Q ss_pred CEE
Q psy859 84 NEL 86 (247)
Q Consensus 84 G~i 86 (247)
|++
T Consensus 215 ~~~ 217 (225)
T PRK10247 215 GEM 217 (225)
T ss_pred chH
Confidence 444
No 258
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.49 E-value=1e-13 Score=120.02 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=66.0
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWA--VLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~--~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
....|.|||||+. +.+|+++||||||+|||+.++..+++ ++..+++.|.|+|++||+++++. .||++++|++
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~ 216 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKD 216 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecC
Confidence 4568889999998 78999999999999999999999998 66666667999999999999986 5999999998
Q ss_pred CE
Q psy859 84 NE 85 (247)
Q Consensus 84 G~ 85 (247)
|+
T Consensus 217 G~ 218 (218)
T cd03290 217 GS 218 (218)
T ss_pred CC
Confidence 74
No 259
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.4e-13 Score=134.22 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=67.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+|||+.++..++++|.+ .|.|||++||+++++..+||+|++|++|++
T Consensus 154 ~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 346779999888 789999999999999999999999999863 589999999999999999999999999999
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 231 ~ 231 (530)
T PRK15064 231 R 231 (530)
T ss_pred E
Confidence 5
No 260
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.48 E-value=2.9e-13 Score=123.38 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=63.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l-~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+.+.+ ..+ .+|.|||++||+++++. .||++++|++|++
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i 236 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-MANKTRILVTSKMEHLK-KADKILILHEGSS 236 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-hCCCEEEEEeCChHHHH-hCCEEEEEECCEE
Confidence 56789999988 6899999999999999999999999865 455 45899999999999985 6999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 237 ~ 237 (282)
T cd03291 237 Y 237 (282)
T ss_pred E
Confidence 5
No 261
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.46 E-value=2.5e-13 Score=121.98 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=68.6
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-..|.|||||+. +.+|++++|||||+|||+.++..+++.+++++++|+|||++||+++++..+||+|++|+ |+
T Consensus 137 ~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~ 215 (255)
T cd03236 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GE 215 (255)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CC
Confidence 3457889999987 68999999999999999999999999999997779999999999999999999999995 55
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
+.
T Consensus 216 ~~ 217 (255)
T cd03236 216 PG 217 (255)
T ss_pred CC
Confidence 53
No 262
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.46 E-value=3.5e-13 Score=131.82 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=65.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|+++||||||+|||+.++..+.+.+.++...|+|+|++||.++.++ .||+|++|++|+++
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIA 532 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 4679999998 7899999999999999999999999999988667899999999999775 59999999988775
No 263
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3.5e-13 Score=135.03 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=67.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|++|||||||+|||+.++..+.++|.++ .| |||++||+++++..+||+|++|++|+++
T Consensus 430 ~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 430 RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 45778888888 7899999999999999999999999999887 35 9999999999999999999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 507 ~ 507 (638)
T PRK10636 507 P 507 (638)
T ss_pred E
Confidence 3
No 264
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.45 E-value=3e-13 Score=133.00 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=67.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+.+.|+++. .|||++||+++++..+||+|++|++|+++
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 35679999988 78999999999999999999999999998862 49999999999999999999999999987
Q ss_pred ec
Q psy859 88 KR 89 (247)
Q Consensus 88 ~~ 89 (247)
.+
T Consensus 240 ~~ 241 (556)
T PRK11819 240 PW 241 (556)
T ss_pred Ee
Confidence 43
No 265
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.4e-13 Score=131.65 Aligned_cols=91 Identities=25% Similarity=0.445 Sum_probs=75.5
Q ss_pred CCCCCCCcchhhhHHHHH---HhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE
Q psy859 3 PSSLQPSESPACILIQRQ---SWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLT 79 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~r~---~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ 79 (247)
||..|+-.++-|.--||. ||...+|++|||||||.|+|..++.+++++|++++++|++||++|-+|+|+..+||||+
T Consensus 393 ~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred CCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 445555555544443332 34488999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEeeccccc
Q psy859 80 IMRGNELRKRRNCL 93 (247)
Q Consensus 80 ii~~G~i~~~~~~~ 93 (247)
+|++|+++..-...
T Consensus 473 Vm~~Gri~~e~~~~ 486 (500)
T COG1129 473 VMREGRIVGELDRE 486 (500)
T ss_pred EEECCEEEEEeccc
Confidence 99999998643333
No 266
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.45 E-value=2.5e-13 Score=135.37 Aligned_cols=81 Identities=27% Similarity=0.387 Sum_probs=72.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++++|||||+|||+.++..+++.++++++.|+|||+++|++. ++..+||++++|++|+++
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 5778888888 7899999999999999999999999999999877999999999995 889999999999999998
Q ss_pred eccccch
Q psy859 88 KRRNCLS 94 (247)
Q Consensus 88 ~~~~~~~ 94 (247)
++....+
T Consensus 247 ~~G~~~~ 253 (617)
T TIGR00955 247 YLGSPDQ 253 (617)
T ss_pred EECCHHH
Confidence 6444433
No 267
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.44 E-value=5.7e-13 Score=120.73 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=65.9
Q ss_pred hhhHHHHHHhh-----CC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE---
Q psy859 13 ACILIQRQSWG-----IG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM--- 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~---~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii--- 81 (247)
.-|.|||||+. .. +|++++|||||+|||+..+..+++.|.+++++|.|||++||++++++ .||+++.|
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~ 247 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE 247 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence 34567777776 34 38999999999999999999999999999888999999999999996 69999999
Q ss_pred ---eCCEEee
Q psy859 82 ---RGNELRK 88 (247)
Q Consensus 82 ---~~G~i~~ 88 (247)
++|+|++
T Consensus 248 ~g~~~G~iv~ 257 (261)
T cd03271 248 GGDGGGQVVA 257 (261)
T ss_pred cCCCCCEEEE
Confidence 7999974
No 268
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.44 E-value=4.2e-13 Score=112.51 Aligned_cols=68 Identities=26% Similarity=0.425 Sum_probs=61.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-|.|||||+. +.+|++++|||||+|||+.+++.+++.+.++ +.|+|++||+++.. ..||++++|++|
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 35778888888 7899999999999999999999999999876 68999999999876 589999999875
No 269
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.44 E-value=5.8e-13 Score=131.77 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=65.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||+|||+.+++.+++.+.++ ..|+|+|++||.++.+.. ||+|++|++|+++
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~ 548 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVRN-ADLVLFLDQGRLI 548 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHHc-CCEEEEEECCEEE
Confidence 4679999988 7899999999999999999999999999887 458999999999999965 9999999987775
No 270
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.43 E-value=3.9e-13 Score=115.60 Aligned_cols=69 Identities=26% Similarity=0.265 Sum_probs=63.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..++++|.+++++|.|||++||+++++....+|++.+
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 46778888888 7899999999999999999999999999998777999999999999999977778776
No 271
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.43 E-value=5.1e-13 Score=116.05 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=66.5
Q ss_pred hhhHHHHHHhhC---------------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCE
Q psy859 13 ACILIQRQSWGI---------------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 13 ~~~~~~r~~~~~---------------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~dr 77 (247)
.+|.||+|++.+ .+|+++||||||+|||+.++..+++.+.+++++|.|||++||+++++..+||+
T Consensus 123 ~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~ 202 (213)
T cd03279 123 TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQR 202 (213)
T ss_pred ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcE
Confidence 467788887772 37899999999999999999999999999877799999999999999999999
Q ss_pred EEEEeCCEE
Q psy859 78 LTIMRGNEL 86 (247)
Q Consensus 78 V~ii~~G~i 86 (247)
+.++++|..
T Consensus 203 i~~~~~~~~ 211 (213)
T cd03279 203 LEVIKTPGG 211 (213)
T ss_pred EEEEecCCC
Confidence 999998854
No 272
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.43 E-value=6.1e-13 Score=118.48 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=67.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +++|++++.||||..||+...+.++++++++.+ .|+|||++||+..-+. .|||++.|.+|++
T Consensus 142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 46789999998 799999999999999999999999999999965 4999999999999887 6999999999986
No 273
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.43 E-value=3e-13 Score=129.16 Aligned_cols=81 Identities=32% Similarity=0.482 Sum_probs=73.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||.+ +.+|++++||||||.||...+..+.++++++. +.|.+.+++||++..+..+||+|++|++|+||
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV 506 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV 506 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe
Confidence 3679999998 78999999999999999999999999999995 55999999999999999999999999999999
Q ss_pred eccccch
Q psy859 88 KRRNCLS 94 (247)
Q Consensus 88 ~~~~~~~ 94 (247)
++..++.
T Consensus 507 E~G~~~~ 513 (534)
T COG4172 507 EQGPTEA 513 (534)
T ss_pred eeCCHHH
Confidence 7555533
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.42 E-value=9.9e-13 Score=132.07 Aligned_cols=72 Identities=32% Similarity=0.499 Sum_probs=64.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++||.++.+. .||+|++|++|+++
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~-~~D~iivl~~G~i~ 678 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV 678 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEEeCCEEE
Confidence 4679999998 78999999999999999999999999998874 5899999999999875 59999999877775
No 275
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.42 E-value=9e-13 Score=129.82 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=64.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||+|||+.+.+.+++.|+++. +|+|+|++||.++.+.. ||+|++|++|+++
T Consensus 452 LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~-~d~i~~l~~G~i~ 528 (569)
T PRK10789 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTE-ASEILVMQHGHIA 528 (569)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHc-CCEEEEEeCCEEE
Confidence 4678999988 78999999999999999999999999998874 69999999999988765 9999999877775
No 276
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.41 E-value=9.1e-13 Score=129.44 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC-CE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG-NE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~-G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..++++|.++. | |||++||+++++..+||++++|++ |+
T Consensus 442 ~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~ 518 (552)
T TIGR03719 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSH 518 (552)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCe
Confidence 356789999988 78999999999999999999999999999873 4 899999999999999999999986 58
Q ss_pred Eeecc-ccchhhhhhh
Q psy859 86 LRKRR-NCLSFRKEKM 100 (247)
Q Consensus 86 i~~~~-~~~~~~~~~~ 100 (247)
++.+. +..++.+++.
T Consensus 519 ~~~~~g~~~~~~~~~~ 534 (552)
T TIGR03719 519 VEWFEGNYSEYEEDKK 534 (552)
T ss_pred EEEeCCCHHHHHHHHH
Confidence 76432 2223444444
No 277
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.41 E-value=6.2e-13 Score=114.28 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=63.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.-|.|||||+. +.+|+++||||||+|||+.+++.+++.|.++++.|.|+|++||+..+....|++++.+
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 46778988888 7899999999999999999999999999998777999999999999999999999877
No 278
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=9.7e-13 Score=129.46 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=71.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC-CE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG-NE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~-G~ 85 (247)
-..|.|||||+. +.+|+++||||||+|||+.++..++++|.++. | |||++||+++++..+||++++|++ |+
T Consensus 444 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~ 520 (556)
T PRK11819 444 GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHILAFEGDSQ 520 (556)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEEEEECCCe
Confidence 456889999988 78999999999999999999999999998862 4 899999999999999999999985 78
Q ss_pred Eeeccc-cchhhhhhh
Q psy859 86 LRKRRN-CLSFRKEKM 100 (247)
Q Consensus 86 i~~~~~-~~~~~~~~~ 100 (247)
+..+.+ ..+|.+.|.
T Consensus 521 ~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 521 VEWFEGNFQEYEEDKK 536 (556)
T ss_pred EEEecCCHHHHHHHHH
Confidence 764332 223444444
No 279
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=8e-13 Score=132.10 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++.++.++|.++ +.|||++||+++++..+||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 34678888887 7899999999999999999999999999887 259999999999999999999999999998
Q ss_pred ec
Q psy859 88 KR 89 (247)
Q Consensus 88 ~~ 89 (247)
.+
T Consensus 233 ~~ 234 (635)
T PRK11147 233 SY 234 (635)
T ss_pred Ee
Confidence 54
No 280
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.41 E-value=1.1e-12 Score=131.86 Aligned_cols=72 Identities=24% Similarity=0.473 Sum_probs=65.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||+. +.+|+++||||||+|||+.+.+.+++.+.++ ..|+|+|++||.++.+.. ||+|++|++|+++
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~ 670 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIA 670 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHh-CCEEEEEeCCEEE
Confidence 4679999988 7899999999999999999999999999987 468999999999999875 9999999887775
No 281
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.41 E-value=1.2e-12 Score=128.80 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=64.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||++||+.+.+.+.+.+.++ .+++|+|++||.++.+.. ||+|++|++|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~ 562 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIV 562 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHHh-CCEEEEEeCCeEe
Confidence 4679999988 7899999999999999999999999999887 468999999999988875 9999999987775
No 282
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.41 E-value=1.1e-12 Score=132.06 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=62.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||.++.+.. ||+|++|++|+++
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~ 690 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD-CDEIIVLERGKVV 690 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh-CCEEEEEeCCEEE
Confidence 3669999998 789999999999999999999999999975 48999999999998876 9999999877765
No 283
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.41 E-value=4.8e-13 Score=120.07 Aligned_cols=64 Identities=27% Similarity=0.551 Sum_probs=59.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..+|++|+||||.+||.|....++.+.|++++++ |.||+++-|+|+.+-.+||||++|+.|+++
T Consensus 165 a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 6799999999999999999999999999999874 799999999999999988888888876654
No 284
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=6.5e-13 Score=119.08 Aligned_cols=73 Identities=21% Similarity=0.435 Sum_probs=64.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.||.||++ +.+|++++.|||++.|||.+.+.+.+.|++++ +.|.|+|++-|+++.|.+.||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE
Confidence 456777776 68999999999999999999999999999996 56999999999999999988887777777665
No 285
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.40 E-value=1.2e-12 Score=131.25 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=62.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||||++ +.+|+++||||||++||+.+.+.+.+.++++ ++|+|++||.++.+.. ||+|++|++|+++
T Consensus 590 SGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~-~D~Iivl~~G~iv 663 (686)
T TIGR03797 590 SGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRN-ADRIYVLDAGRVV 663 (686)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHc-CCEEEEEECCEEE
Confidence 679999998 7899999999999999999999999999775 6899999999998876 9999999877775
No 286
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=9e-13 Score=132.05 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=68.7
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+|||+.++.++.++|.++ +.|||++||+++++..+||++++|++|++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 345778988888 7899999999999999999999999998775 56999999999999999999999999999
Q ss_pred eeccc
Q psy859 87 RKRRN 91 (247)
Q Consensus 87 ~~~~~ 91 (247)
+.+.+
T Consensus 225 ~~~~g 229 (638)
T PRK10636 225 FEYTG 229 (638)
T ss_pred EEecC
Confidence 75443
No 287
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.6e-13 Score=129.41 Aligned_cols=71 Identities=27% Similarity=0.539 Sum_probs=62.9
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|+|||++ .+|.++++|||||.||||.+-+++.+.+.+. .+|+|+|++||.+..++. ||+|++|++|+++
T Consensus 476 SGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le~-~drIivl~~Gkii 551 (573)
T COG4987 476 SGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLER-MDRIIVLDNGKII 551 (573)
T ss_pred CchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHhh-cCEEEEEECCeee
Confidence 557888887 7999999999999999999999999999885 459999999999999997 8888888877765
No 288
>PRK13409 putative ATPase RIL; Provisional
Probab=99.40 E-value=8.6e-13 Score=131.40 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=67.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|+++||||||+|||+.++..++++|+++++ .|.|||++||+++++..+|||+++|++ ++
T Consensus 453 ~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~ 531 (590)
T PRK13409 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EP 531 (590)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cc
Confidence 45778989887 789999999999999999999999999999965 499999999999999999999999964 65
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
.
T Consensus 532 ~ 532 (590)
T PRK13409 532 G 532 (590)
T ss_pred e
Confidence 3
No 289
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.40 E-value=1.4e-12 Score=127.94 Aligned_cols=72 Identities=24% Similarity=0.397 Sum_probs=64.3
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ ..+|++++|||||++||+.+...+.+.+.++ .+++|+|++||.++.+.. ||+|++|++|+++
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~-~D~Ii~l~~g~i~ 557 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEK-ADEILVVEDGEIV 557 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHh-CCEEEEEECCEEE
Confidence 3679999998 7899999999999999999999999999886 457999999999988765 9999999887775
No 290
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.39 E-value=1.2e-12 Score=128.72 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|++|||||||+|||+.++..+.+.|.++ +.|||++||+++.+..+||++++|++|+++
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 56789999988 7899999999999999999999999999875 359999999999999999999999999986
Q ss_pred ec
Q psy859 88 KR 89 (247)
Q Consensus 88 ~~ 89 (247)
.+
T Consensus 238 ~~ 239 (552)
T TIGR03719 238 PW 239 (552)
T ss_pred Ee
Confidence 43
No 291
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.39 E-value=1.6e-12 Score=128.03 Aligned_cols=72 Identities=15% Similarity=0.326 Sum_probs=64.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ ..+|++++|||||++||+.+.+.+.+.+.++. +++|+|++||.++.+.. ||+|++|++|+++
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~ 553 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIVE-ADTILVLHRGQAV 553 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHh-CCEEEEEECCEEE
Confidence 4668999998 78999999999999999999999999998874 47999999999988775 9999999877765
No 292
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.39 E-value=8.8e-13 Score=113.83 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=61.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|.+++++|.|||++||++++++. |+++-+.
T Consensus 127 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeec
Confidence 45778999888 78999999999999999999999999999987779999999999999997 8887764
No 293
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.39 E-value=1.5e-12 Score=128.41 Aligned_cols=72 Identities=22% Similarity=0.490 Sum_probs=65.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|++++|||||++||+.+.+.+.+.+.++. +|+|+|++||.++.+.. ||+|++|++|+++
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~-~d~i~~l~~G~i~ 552 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQ-FDRICVMDNGQII 552 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHh-CCEEEEEeCCeEE
Confidence 4679999998 78999999999999999999999999999874 58999999999999875 9999999987775
No 294
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.39 E-value=7.6e-13 Score=126.40 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=82.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+- +.+|++||.||||+.||...+..+.++++++.++ |++++++||++.-+.+++|||++|.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 3668999986 7899999999999999999999999999999654 999999999999999999999999999999
Q ss_pred eccccchhhhh-----hhhhhhcCCCCCCCCh
Q psy859 88 KRRNCLSFRKE-----KMRLILTFPLCFPSSM 114 (247)
Q Consensus 88 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 114 (247)
+...+..+-.. --+|..--|.+.|+|.
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~ 269 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL 269 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcCCCCCCCCC
Confidence 76665542111 1123444566666653
No 295
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.38 E-value=1.3e-12 Score=132.55 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=63.9
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||||++ +++|++|+|||||++||+.+.+.+.+.+.++ ..|+|+|++||.++.+.. ||||++|++|+|+
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~-~~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv 686 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLSTIRS-ADRIIVLDQGKIV 686 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH-hcCCeEEEEEccchHhhh-ccEEEEccCCcee
Confidence 669999998 8999999999999999999999999999997 468999999999998886 8888888776665
No 296
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.38 E-value=2.1e-12 Score=126.82 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=65.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||||+. +.+|++++|||||+.||+.+-+.+.+.+.++. +|+|+++++|.++.+.. ||+|++|++|+++
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~ 542 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIV 542 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEEEEEECCEEE
Confidence 669999998 78999999999999999999999999999875 67899999999999998 9999999988775
No 297
>PRK13409 putative ATPase RIL; Provisional
Probab=99.38 E-value=1.4e-12 Score=129.82 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=67.9
Q ss_pred cchhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 10 ESPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 10 ~~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
..-.-|.|||||+. +.+|+++||||||+|||+.++..++++|+++++ |.|||++||+++++..+||+|.+|++|
T Consensus 209 ~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 34456789999988 689999999999999999999999999999987 999999999999999999999999863
No 298
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.2e-12 Score=116.35 Aligned_cols=75 Identities=24% Similarity=0.369 Sum_probs=65.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..-|.||+||+- .-+|++|+||||||.|||.+-.++=++|.+++ +..||+++||+|.-|.+++|+.+++..|++
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~L 226 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEE
Confidence 345678888886 57999999999999999999999999999986 689999999999999997777777776666
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 227 v 227 (253)
T COG1117 227 V 227 (253)
T ss_pred E
Confidence 5
No 299
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2e-12 Score=126.24 Aligned_cols=77 Identities=27% Similarity=0.471 Sum_probs=71.4
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEeec
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRKR 89 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~~ 89 (247)
+.++||-+. ..+++++||||||+.|+......+.+++++++++|.+||++||.|+|+-++||||.||++|+.+..
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 457788777 569999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc
Q psy859 90 RN 91 (247)
Q Consensus 90 ~~ 91 (247)
.+
T Consensus 227 ~~ 228 (500)
T COG1129 227 RP 228 (500)
T ss_pred cc
Confidence 55
No 300
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.37 E-value=2.6e-12 Score=126.69 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=64.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +++|++++|||||++||+.+...+++.+.++. .++|+|++||.++.+.. ||+|++|++|+++
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~-~D~ii~l~~G~i~ 548 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRN-ADRILVFDNGRVV 548 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHh-CCEEEEEECCEEE
Confidence 4679999988 78999999999999999999999999998863 58999999999998764 9999999988775
No 301
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.6e-12 Score=121.84 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=68.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++++||||.|.||...|..++..|+++.+ -|.|+|++||+-.||..++|||++|++|+|
T Consensus 133 ~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i 212 (338)
T COG3839 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212 (338)
T ss_pred cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee
Confidence 34779999998 789999999999999999999999999999854 499999999999999999999999998777
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
.
T Consensus 213 ~ 213 (338)
T COG3839 213 Q 213 (338)
T ss_pred e
Confidence 5
No 302
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.37 E-value=2.6e-12 Score=129.37 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=63.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||++||+.+.+.+.+.|.++ .|+|+|++||.++.+. .||+|++|++|+++
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAK-QSDKIIVLDHGKII 687 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHH-cCCEEEEEECCEEE
Confidence 3679999998 7899999999999999999999999999875 4899999999999876 49999999877775
No 303
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.37 E-value=9.3e-13 Score=124.01 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=69.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.||+||++ +.+|++|+||||.+.||..-|..+...++++. +.|.|+|++||+-+|+..++|||++|++|+|
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCce
Confidence 45778999988 78999999999999999999999999999985 4599999999999999999999999998888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
.-
T Consensus 216 ~Q 217 (352)
T COG3842 216 EQ 217 (352)
T ss_pred ee
Confidence 64
No 304
>PLN03073 ABC transporter F family; Provisional
Probab=99.36 E-value=2.7e-12 Score=130.46 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=65.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+.+.+.++ .| |||++||+++++..+||++++|.+|+++
T Consensus 627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 35778998887 7899999999999999999999998888764 34 9999999999999999999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 704 ~ 704 (718)
T PLN03073 704 P 704 (718)
T ss_pred E
Confidence 3
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.36 E-value=1.1e-12 Score=119.16 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=67.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|+++++|||++.||...+..+.+++.+++++ |.|.+++||+++.+..+||||++|..|+||
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iV 189 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIV 189 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCcee
Confidence 5779999998 6899999999999999999999999999999754 999999999999999988888877776665
No 306
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.36 E-value=3.5e-12 Score=127.96 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=71.9
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.||+||+. +.+|++++|||||+|||+.+++.+.+.+.+++++|+|++++||+++.++ .|||+++|++|+++
T Consensus 144 ~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~ 222 (648)
T PRK10535 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV 222 (648)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE
Confidence 35678888888 7899999999999999999999999999998777999999999999887 59999999999998
Q ss_pred eccccc
Q psy859 88 KRRNCL 93 (247)
Q Consensus 88 ~~~~~~ 93 (247)
+..+..
T Consensus 223 ~~g~~~ 228 (648)
T PRK10535 223 RNPPAQ 228 (648)
T ss_pred eecCcc
Confidence 655554
No 307
>PLN03073 ABC transporter F family; Provisional
Probab=99.36 E-value=3.2e-12 Score=129.94 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=70.2
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-..|.|||||+. +.+|++|||||||+|||+.++.++++.|+++ |.|||++||+++++..+||++++|++|+
T Consensus 342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTDILHLHGQK 418 (718)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 3457789988888 7899999999999999999999999999876 7899999999999999999999999999
Q ss_pred Eeeccc
Q psy859 86 LRKRRN 91 (247)
Q Consensus 86 i~~~~~ 91 (247)
++.+.+
T Consensus 419 i~~~~g 424 (718)
T PLN03073 419 LVTYKG 424 (718)
T ss_pred EEEeCC
Confidence 975443
No 308
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.35 E-value=1.1e-12 Score=111.33 Aligned_cols=59 Identities=27% Similarity=0.548 Sum_probs=53.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..++++|.+++++|.|||++||+++++
T Consensus 127 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 45778988888 789999999999999999999999999999977799999999998763
No 309
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=1.8e-12 Score=113.20 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=65.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.||.||.+ .-+|+++++||||+.|||....++.+.+++++++|+|++++||.|..+..++.+|+++++|.|-
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 445555555 3499999999999999999999999999999999999999999999999999999999988873
No 310
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.35 E-value=3.6e-12 Score=125.35 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=65.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLS-QIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~-~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ +.+|+++||||||++||+.+.+.+++.+. .++..|+|+|++||.++.++ .||+|++|++|+++
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV 549 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 4678999988 78999999999999999999999998664 45567999999999998765 69999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 550 ~ 550 (555)
T TIGR01194 550 K 550 (555)
T ss_pred E
Confidence 5
No 311
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.35 E-value=3e-12 Score=128.03 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=68.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe-CCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR-GNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~-~G~i 86 (247)
.-|.|||||++ +.+|++|||||||+|||+.++..+.++++++ +.|||++||+++++..+||++++|. +|++
T Consensus 440 ~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i 516 (635)
T PRK11147 440 ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKI 516 (635)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeE
Confidence 45778999887 7899999999999999999999999999876 4599999999999999999999997 8999
Q ss_pred eeccc
Q psy859 87 RKRRN 91 (247)
Q Consensus 87 ~~~~~ 91 (247)
+.+.+
T Consensus 517 ~~~~g 521 (635)
T PRK11147 517 GRYVG 521 (635)
T ss_pred EEccC
Confidence 86543
No 312
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.34 E-value=3e-12 Score=124.12 Aligned_cols=77 Identities=23% Similarity=0.460 Sum_probs=70.5
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEeec
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRKR 89 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~~ 89 (247)
+-++|||+- ..+|++|||||||+-|.|....++++.++.++++|+|||++||-++|+.++|||+.+|++|+++.-
T Consensus 142 sVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 142 SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred CcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 347777776 689999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cc
Q psy859 90 RN 91 (247)
Q Consensus 90 ~~ 91 (247)
.+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 33
No 313
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.34 E-value=4.3e-12 Score=128.32 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=60.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|+++||||||++||+...+.+.+ .. ...++|+|++||.++.+.. ||+|++|++|+++
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~-aD~IivL~~G~iv 692 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVER-ADQILVLKKGSVV 692 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHh-CCEEEEEECCEEE
Confidence 4679999998 78999999999999999999999988 22 2468999999999998875 9999999877775
No 314
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.33 E-value=5.6e-12 Score=123.46 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=64.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||+. ..+|++++|||||++||+.+.+.+++.++++. .++|+|++||.++.... ||+|+.|++|+++
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~-~d~vi~l~~g~~~ 553 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLK-ADRIVVMDQGRIV 553 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHh-CCEEEEEECCEEE
Confidence 4679999998 67999999999999999999999999999874 58999999999988764 9999999877765
No 315
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.8e-12 Score=125.29 Aligned_cols=72 Identities=19% Similarity=0.402 Sum_probs=63.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||+||++ .++++++++||||++||..+-+.+.+.|.++.+ ++|+|++||.+..+.. ||+|++|++|+++
T Consensus 457 LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~-~D~I~vld~G~l~ 533 (559)
T COG4988 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAAD-ADRIVVLDNGRLV 533 (559)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhc-CCEEEEecCCcee
Confidence 3679999998 789999999999999999999999999999854 6999999999999887 8888888766654
No 316
>PLN03140 ABC transporter G family member; Provisional
Probab=99.32 E-value=4e-12 Score=137.53 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=70.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEEeC-CEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIMRG-NEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii~~-G~i 86 (247)
-|.|||||+. +.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|+++ ++..+||++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 5789999988 7899999999999999999999999999999888999999999998 67889999999996 898
Q ss_pred eecc
Q psy859 87 RKRR 90 (247)
Q Consensus 87 ~~~~ 90 (247)
++..
T Consensus 1100 v~~G 1103 (1470)
T PLN03140 1100 IYSG 1103 (1470)
T ss_pred EEEC
Confidence 7543
No 317
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.32 E-value=8.4e-12 Score=121.95 Aligned_cols=72 Identities=26% Similarity=0.415 Sum_probs=64.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|||||++ ..+|++++|||||++||+...+.+.+.|.++ ..++|+|++||+.+... .||+|++|++|+++
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV 546 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE
Confidence 3779999998 7899999999999999999999999999887 45799999999998765 49999999877765
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.32 E-value=7.3e-12 Score=122.76 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|+++||||||+|||+.+.+.+++.+.+.. ..|+|+|++||.++.+. .||+|++|++|++
T Consensus 449 ~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i 527 (547)
T PRK10522 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQL 527 (547)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEE
Confidence 45779999988 78999999999999999999999999987653 45899999999997765 6999999999999
Q ss_pred eec
Q psy859 87 RKR 89 (247)
Q Consensus 87 ~~~ 89 (247)
++.
T Consensus 528 ~e~ 530 (547)
T PRK10522 528 SEL 530 (547)
T ss_pred EEe
Confidence 854
No 319
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.31 E-value=4.4e-12 Score=136.72 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=69.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCH-HHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSM-DECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l-~e~e~l~drV~ii~~G~i 86 (247)
-|.|||||+. +.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+. +++..+||+|++|++|++
T Consensus 210 LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~i 289 (1394)
T TIGR00956 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQ 289 (1394)
T ss_pred CCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeE
Confidence 4678888888 689999999999999999999999999999976 499999999996 789999999999999998
Q ss_pred eec
Q psy859 87 RKR 89 (247)
Q Consensus 87 ~~~ 89 (247)
++.
T Consensus 290 v~~ 292 (1394)
T TIGR00956 290 IYF 292 (1394)
T ss_pred EEE
Confidence 753
No 320
>KOG0055|consensus
Probab=99.31 E-value=6.4e-12 Score=132.19 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=67.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|||||++ +.+|++|+|||||++||+.+.+.+.+.|... ..|+|.|+++|.++.+.. +|+|++|++|+|++
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE 567 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE
Confidence 5779999998 7899999999999999999999999999775 579999999999999999 99999999888874
No 321
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.30 E-value=8.6e-12 Score=129.99 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=72.1
Q ss_pred CcchhhhHHHHHHhh-----CCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 9 SESPACILIQRQSWG-----IGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 9 ~~~~~~~~~~r~~~~-----~~~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
+....-|.||+||+. ..+| +++||||||+||||..+..++++|+++++.|.|||+++|+++++. .||+|++|
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~L 563 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDI 563 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEe
Confidence 344556778888877 3455 999999999999999999999999999888999999999999987 59999999
Q ss_pred ------eCCEEeeccccchh
Q psy859 82 ------RGNELRKRRNCLSF 95 (247)
Q Consensus 82 ------~~G~i~~~~~~~~~ 95 (247)
++|++++..+..++
T Consensus 564 gpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 564 GPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred ccccCCCCCEEeeccCHHHH
Confidence 88888764444443
No 322
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=9.9e-12 Score=129.29 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=66.7
Q ss_pred hhhHHHHHHhh-----CCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE----
Q psy859 13 ACILIQRQSWG-----IGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM---- 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~--P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii---- 81 (247)
.-|.||+||+. ..+ |.++||||||+||||..+..+++.|+++++.|.|||+++|+++++. .||+|++|
T Consensus 487 tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~Lgpga 565 (924)
T TIGR00630 487 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGA 565 (924)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccc
Confidence 34567767666 345 4899999999999999999999999999888999999999999987 89999999
Q ss_pred --eCCEEeeccc
Q psy859 82 --RGNELRKRRN 91 (247)
Q Consensus 82 --~~G~i~~~~~ 91 (247)
++|+|++...
T Consensus 566 G~~~G~Iv~~g~ 577 (924)
T TIGR00630 566 GIHGGEVVASGT 577 (924)
T ss_pred cCCCCEEeeccC
Confidence 7888875433
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.29 E-value=1.2e-11 Score=108.26 Aligned_cols=73 Identities=18% Similarity=0.408 Sum_probs=68.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|++||++ +++|++|+.||||..|||....++.+++.++...|.||+++||+.+-+...-.|++.+.+|+++
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 556677776 8999999999999999999999999999999999999999999999999999999999999997
No 324
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.29 E-value=7.6e-12 Score=134.95 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=71.0
Q ss_pred hhhHHHHHHhh-----CCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH-HHhhcCEEEEEeCC-
Q psy859 13 ACILIQRQSWG-----IGDPP-LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE-CEALCNRLTIMRGN- 84 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~-lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e-~e~l~drV~ii~~G- 84 (247)
.-|.|||||+. +.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|+++. +...||++++|++|
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 36789999988 68997 999999999999999999999999998889999999999986 45789999999997
Q ss_pred EEeecccc
Q psy859 85 ELRKRRNC 92 (247)
Q Consensus 85 ~i~~~~~~ 92 (247)
++++....
T Consensus 981 ~iv~~G~~ 988 (1394)
T TIGR00956 981 QTVYFGDL 988 (1394)
T ss_pred EEEEECCc
Confidence 99865443
No 325
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.28 E-value=1.4e-11 Score=134.31 Aligned_cols=68 Identities=24% Similarity=0.346 Sum_probs=62.0
Q ss_pred hhHHHHHHhh----C----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 14 CILIQRQSWG----I----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 14 ~~~~~r~~~~----~----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-|.||+||+. + .+|+++||||||+|||+..++.++++|.+++++|.|||++||+++++ ..||++++|.
T Consensus 810 LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~ 885 (1809)
T PRK00635 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELG 885 (1809)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEc
Confidence 4667777776 2 59999999999999999999999999999988899999999999999 7899999995
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.28 E-value=1.3e-11 Score=133.59 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=66.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-|.|||||++ +.+|++|||||||++||+.+...+.+.|.++++ .|+|+|++||.++.+. .||+|++|++|+
T Consensus 579 ~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g~ 656 (1466)
T PTZ00265 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNRE 656 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCCc
Confidence 45779999998 789999999999999999999999999999865 5999999999999985 799999999985
No 327
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.27 E-value=8.8e-12 Score=106.60 Aligned_cols=65 Identities=25% Similarity=0.252 Sum_probs=56.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLT 79 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ 79 (247)
.-|.|||||+. +.+|++++|||||+|||+.++..++++|.+++++|.|||++||+..++ .|+++.
T Consensus 127 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~ 196 (198)
T TIGR01189 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAREL 196 (198)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEe
Confidence 45778999888 789999999999999999999999999999877799999999998543 356654
No 328
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=3.2e-11 Score=107.67 Aligned_cols=73 Identities=19% Similarity=0.393 Sum_probs=67.0
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|++|-++ +.+|++|+|||||.||-|.-..++.+.|++++++ |.||+++-++...+..++||.++|.+|+|+
T Consensus 138 SGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 138 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 557777777 7899999999999999999999999999999865 889999999999999999999999987776
No 329
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.26 E-value=2.6e-11 Score=126.45 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=60.8
Q ss_pred hhhHHHHHHhh-----CCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWG-----IGDP---PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P---~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-|.||+||+. +.+| +++||||||+|||+..+..+++.|.++++.|.|||++||+++++. .||+|+.|.
T Consensus 830 tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lg 906 (943)
T PRK00349 830 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLG 906 (943)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEec
Confidence 34567777766 5677 999999999999999999999999999878999999999999986 699999993
No 330
>PLN03140 ABC transporter G family member; Provisional
Probab=99.26 E-value=1.2e-11 Score=133.79 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=69.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCH-HHHHhhcCEEEEEeCCEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSM-DECEALCNRLTIMRGNEL 86 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l-~e~e~l~drV~ii~~G~i 86 (247)
-|.|||||+. +++|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|+. +++..+||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 4668888888 689999999999999999999999999999965 599999999986 699999999999999999
Q ss_pred eecc
Q psy859 87 RKRR 90 (247)
Q Consensus 87 ~~~~ 90 (247)
+++.
T Consensus 417 vy~G 420 (1470)
T PLN03140 417 VYQG 420 (1470)
T ss_pred EEeC
Confidence 8543
No 331
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.26 E-value=9.9e-12 Score=107.59 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred hhhHHHHHHhh---------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CcEEEEEcCCHHHHHhhcCEEEE
Q psy859 13 ACILIQRQSWG---------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT---GQSIVLTSHSMDECEALCNRLTI 80 (247)
Q Consensus 13 ~~~~~~r~~~~---------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~---G~TIllsSH~l~e~e~l~drV~i 80 (247)
..|.||||++. +.+|++++|||||+|||+..+..+++.|.++.++ +.||+++||+++++..+ |+|.+
T Consensus 109 ~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~ 187 (198)
T cd03276 109 TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV 187 (198)
T ss_pred ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE
Confidence 46778888766 2799999999999999999999999999987543 46999999999999985 99999
Q ss_pred EeCCE
Q psy859 81 MRGNE 85 (247)
Q Consensus 81 i~~G~ 85 (247)
++.|+
T Consensus 188 ~~~~~ 192 (198)
T cd03276 188 FRMKD 192 (198)
T ss_pred EEecC
Confidence 99754
No 332
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.25 E-value=1e-11 Score=106.08 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=58.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV 78 (247)
-..|.|||||+. +.+|++++|||||+|||+.++..+++++++..+.|.|++++||++++++. +|-+
T Consensus 122 ~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 356788998888 78999999999999999999999999998766679999999999998886 5543
No 333
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.25 E-value=1.1e-11 Score=106.23 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=58.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV 78 (247)
.-|.||+||+. +.+|+++||||||+|||+.++..+++.|.++++.|.|||++||+.+.+.. ||.-
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~ 196 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYE 196 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchh
Confidence 46778888888 78999999999999999999999999999987779999999999988876 7653
No 334
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.25 E-value=1.9e-11 Score=110.14 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=68.2
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~--G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|-|+||+++ +++|++||||||++|||..+|..+.+.+.++... +.+++++||+.+|+-.-.++++.++.|+++
T Consensus 173 S~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred CHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 447788887 8999999999999999999999999999998654 889999999999999999999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 253 ~ 253 (257)
T COG1119 253 A 253 (257)
T ss_pred e
Confidence 4
No 335
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.24 E-value=3.2e-11 Score=105.74 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=58.5
Q ss_pred hhhHHHHHHhh----C-----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWG----I-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~----~-----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-|.|||||++ + .+|++++|||||+||||.+++.+++.++++.+ +.+||++||.. ++..+||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHhhCCEEEEEE
Confidence 45678888887 2 25899999999999999999999999999855 88888888885 5788999999996
No 336
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.24 E-value=3e-11 Score=104.50 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred chhhhHHHHHHhh----C-----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 11 SPACILIQRQSWG----I-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 11 ~~~~~~~~r~~~~----~-----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.-..|.||||++. + .+|++++|||||+|||+..+..+++.|+++.+ +.|||++||++++++ .||+++.|
T Consensus 111 ~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~~d~v~~~ 188 (197)
T cd03278 111 LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTME-AADRLYGV 188 (197)
T ss_pred hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-hcceEEEE
Confidence 3456788888886 1 46699999999999999999999999999854 799999999999875 79999999
Q ss_pred eC
Q psy859 82 RG 83 (247)
Q Consensus 82 ~~ 83 (247)
..
T Consensus 189 ~~ 190 (197)
T cd03278 189 TM 190 (197)
T ss_pred Ee
Confidence 74
No 337
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=4.5e-11 Score=106.35 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=65.5
Q ss_pred hhHHHHHHhh-----------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 14 CILIQRQSWG-----------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 14 ~~~~~r~~~~-----------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-|.|.+||+. +.++++|||||||+.||+..+....++.+++.++|..|+.+=|+++-+...||||++|.
T Consensus 136 LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~ 215 (259)
T COG4559 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH 215 (259)
T ss_pred cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee
Confidence 3456677765 45667999999999999999999999999999999999999999999999999999998
Q ss_pred CCEEe
Q psy859 83 GNELR 87 (247)
Q Consensus 83 ~G~i~ 87 (247)
+||++
T Consensus 216 ~Grv~ 220 (259)
T COG4559 216 QGRVI 220 (259)
T ss_pred CCeEe
Confidence 87775
No 338
>PLN03232 ABC transporter C family member; Provisional
Probab=99.23 E-value=4.1e-11 Score=130.06 Aligned_cols=72 Identities=15% Similarity=0.298 Sum_probs=65.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||||++. +.+|++|||||||++||+.+.+.+.+.|++. .+++|+|+++|.++.+.. ||+|++|++|+++
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE-FKSCTMLVIAHRLNTIID-CDKILVLSSGQVL 1448 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 4679999998 7899999999999999999999999999886 358999999999999987 9999999887775
No 339
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.8e-11 Score=105.38 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=70.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
+-|.||+||+. +..|+++|+||||.|||...+.++.++++.+.. -|.+++++||++..+.-+++|.++|++|++
T Consensus 151 tFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~v 230 (258)
T COG4107 151 TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230 (258)
T ss_pred ccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCE
Confidence 45778999988 689999999999999999999999999999854 499999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 231 ve 232 (258)
T COG4107 231 VE 232 (258)
T ss_pred ec
Confidence 73
No 340
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=4.6e-11 Score=124.39 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=60.2
Q ss_pred hhhHHHHHHhh-----CC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWG-----IG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~---~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.-|.||+||+. +. +|+++||||||+|||+..+..+++.|.+++++|.|||++||+++++. .||++++|
T Consensus 828 tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~L 903 (924)
T TIGR00630 828 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDL 903 (924)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEe
Confidence 35667777775 33 69999999999999999999999999999888999999999999986 59999999
No 341
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.22 E-value=4.1e-11 Score=104.07 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=61.0
Q ss_pred hhhHHHHHHh------h-----CCCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEE
Q psy859 13 ACILIQRQSW------G-----IGDPPLVFLDEPTSGVDPISRH-RLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLT 79 (247)
Q Consensus 13 ~~~~~~r~~~------~-----~~~P~lLiLDEPTsGLDp~~r~-~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ 79 (247)
..|.||+|++ . ..+|++++|||||+|||+..+. .+++.+.+++++ |.|||++||+++.+. .||+++
T Consensus 115 ~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~ 193 (204)
T cd03240 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIY 193 (204)
T ss_pred ccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEE
Confidence 4567787763 2 5899999999999999999999 999999998766 899999999999875 699999
Q ss_pred EEeC
Q psy859 80 IMRG 83 (247)
Q Consensus 80 ii~~ 83 (247)
.|.+
T Consensus 194 ~l~~ 197 (204)
T cd03240 194 RVEK 197 (204)
T ss_pred EEee
Confidence 9964
No 342
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.22 E-value=5.2e-11 Score=130.03 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=68.1
Q ss_pred cchhhhHHHHHHhh-----CCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 10 ESPACILIQRQSWG-----IGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 10 ~~~~~~~~~r~~~~-----~~~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
....-|.||+||+. ..+| +++||||||+||||..+..++++|+++++.|.|||++||+++ +...||+|++|.
T Consensus 473 ~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~-vi~~aDrVi~L~ 551 (1809)
T PRK00635 473 ALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ-MISLADRIIDIG 551 (1809)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHhCCEEEEEc
Confidence 34456778888877 5688 799999999999999999999999999888999999999999 558899999996
Q ss_pred ------CCEEeec
Q psy859 83 ------GNELRKR 89 (247)
Q Consensus 83 ------~G~i~~~ 89 (247)
+|++++.
T Consensus 552 pGag~~gG~Iv~~ 564 (1809)
T PRK00635 552 PGAGIFGGEVLFN 564 (1809)
T ss_pred CCcccCCCEEEEe
Confidence 5677653
No 343
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2.7e-11 Score=111.44 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=70.5
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
|.|.|||++ ...|++|++|||.+.||-..++++...+.+++++ ...|+++||+++|+.++||+|++|.+|++.+
T Consensus 130 SGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred CcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 446666666 6799999999999999999999999999999765 8999999999999999999999999999987
Q ss_pred ccccch
Q psy859 89 RRNCLS 94 (247)
Q Consensus 89 ~~~~~~ 94 (247)
....++
T Consensus 210 ~g~~e~ 215 (352)
T COG4148 210 SGPLEE 215 (352)
T ss_pred cCcHHH
Confidence 555544
No 344
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.21 E-value=3.2e-11 Score=105.72 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCcchhhhHHHHHHhh---------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEcCCHHHHHhhcC
Q psy859 8 PSESPACILIQRQSWG---------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-G-QSIVLTSHSMDECEALCN 76 (247)
Q Consensus 8 ~~~~~~~~~~~r~~~~---------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G-~TIllsSH~l~e~e~l~d 76 (247)
..-.-..|.||||+.. +.+|+++++||||+|||+..+..+++.+.++.++ | .|++++||++.++...||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 3333456778888654 3699999999999999999999999999998665 5 589999999988888887
Q ss_pred --EEEEEeCCE
Q psy859 77 --RLTIMRGNE 85 (247)
Q Consensus 77 --rV~ii~~G~ 85 (247)
+|++|.+|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 688888886
No 345
>PLN03130 ABC transporter C family member; Provisional
Probab=99.20 E-value=6.7e-11 Score=129.24 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=72.1
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
=|.||||++. +.+|++|||||||++||+.+-+.+.+.|++. .+|+|+|+++|.++.+.. ||+|++|++|+|++
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~-~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE-FKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE 1452 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE
Confidence 4679999998 7899999999999999999999999999986 458999999999999987 99999999999987
Q ss_pred ccccchhh
Q psy859 89 RRNCLSFR 96 (247)
Q Consensus 89 ~~~~~~~~ 96 (247)
+.++.++.
T Consensus 1453 ~Gt~~eLl 1460 (1622)
T PLN03130 1453 FDTPENLL 1460 (1622)
T ss_pred eCCHHHHH
Confidence 66665543
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.20 E-value=7.5e-11 Score=128.22 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=64.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.||||++. +.+|++|+|||||++||+.+-+.+.+.|++. .+++|+|+++|.++.+.. ||+|++|++|+|+
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~-~~~~TvI~IAHRl~ti~~-~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ-FEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVA 1498 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 3679999998 7899999999999999999999999999885 458999999999999886 8888888877765
No 347
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.19 E-value=6.1e-11 Score=105.35 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=60.8
Q ss_pred hhhhHHHHHHhh-----C----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG-----I----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
...|.+|||++. + .+|+++||||||+|||+..+..+.+.|.++.++|.+||++||+.+.. ..||++++|.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~ 232 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVY 232 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEE
Confidence 345678888876 2 24899999999999999999999999999876799999999997665 6799999987
Q ss_pred C
Q psy859 83 G 83 (247)
Q Consensus 83 ~ 83 (247)
+
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 5
No 348
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=5.5e-11 Score=104.91 Aligned_cols=75 Identities=28% Similarity=0.492 Sum_probs=68.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHHHHHhhcCEEEEEe--CCE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMR--GNE 85 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~e~e~l~drV~ii~--~G~ 85 (247)
-|.|||||++ ..+|++|+||||+..||...|+.+.+++.++ +..|+.++++||+++|+--+++|+++|. .|+
T Consensus 133 LSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred ecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 4679999999 5799999999999999999999999999886 6779999999999999999999999997 468
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
|+.
T Consensus 213 vv~ 215 (259)
T COG4525 213 VVE 215 (259)
T ss_pred eeE
Confidence 874
No 349
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.19 E-value=4.8e-11 Score=102.93 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=71.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
+|-|.||.||++ +-+|++|++||||+.|||.--..+.++|+++...|.|=+++||..+.+..++.+|+.|.+|+|
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~i 219 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCee
Confidence 455667777776 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 220 ve 221 (242)
T COG4161 220 VE 221 (242)
T ss_pred Ee
Confidence 85
No 350
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.18 E-value=7.2e-11 Score=103.32 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=58.0
Q ss_pred hhhHHHHHHhh-----C-C---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----I-G---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~-~---~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
.-|.+|||++. + + +|++++|||||+||||.++..+++.++++. ++.|++++||. .++..+||++++|.+
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLR-NNMFELADRLVGIYK 204 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECc-HHHHHhCCEEEEEEe
Confidence 35668888777 1 2 479999999999999999999999999984 46788888898 577889999999984
No 351
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=2.3e-10 Score=102.90 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=66.0
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|-||+.|++ .-+|++||+||-.+-.|+..++++.+.+.++.+++.||+++||+++.+.++||+++.|++|++.
T Consensus 149 SSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred cHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEE
Confidence 557877777 4699999999999999999999999999999888899999999999999988888888877664
No 352
>KOG0061|consensus
Probab=99.16 E-value=4.4e-11 Score=119.79 Aligned_cols=74 Identities=28% Similarity=0.491 Sum_probs=65.9
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH-HHHHhhcCEEEEEeCCEEee
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM-DECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l-~e~e~l~drV~ii~~G~i~~ 88 (247)
|.|+|+|+. ++||.+|+|||||+|||......+.+.+++++++|+|||+|=|.. .++-.+-|++++|.+|++++
T Consensus 172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 446777776 899999999999999999999999999999988899999999998 67888889999998887764
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.16 E-value=1.1e-10 Score=126.44 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=62.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
=|.|||||++ +.+|++|||||||++||+.+.+.+.+.|.++. .+|+|+|++||.++.+.. ||+|++|++
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~ 1433 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNN 1433 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeC
Confidence 3569999998 78999999999999999999999999999875 469999999999998875 999999987
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.15 E-value=1.6e-10 Score=125.42 Aligned_cols=72 Identities=18% Similarity=0.422 Sum_probs=64.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.||||++. +.+|++|||||||++||+.+.+.+.+.|++. ..++|||++||.++.+.. ||+|++|++|+|+
T Consensus 1354 LSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~-~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS-FSNCTVILSEHRVEALLE-CQQFLVIEGSSVK 1430 (1490)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 3679999988 7899999999999999999999999999885 458999999999998886 9999999987775
No 355
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.15 E-value=1.1e-10 Score=100.59 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=63.2
Q ss_pred hhHHHHHHhh----CCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG----IGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~----~~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.+.+||++.. +.+|+++++|||++|+|+..+..++. .+..+.+.|.|+|++||+ .+...+||++..|++|++.
T Consensus 92 fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 92 FSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENASME 169 (200)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEE
Confidence 4567766655 67999999999999999999999964 677777779999999998 6678899999999999986
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.14 E-value=1.9e-10 Score=124.98 Aligned_cols=74 Identities=14% Similarity=0.270 Sum_probs=65.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~-l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. ..+|++++|||||+|||+..++.+++. +..+. +|+|+|++||+++.+.. ||+|++|++|++
T Consensus 548 ~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~-ad~ii~l~~g~i 625 (1490)
T TIGR01271 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK-ADKILLLHEGVC 625 (1490)
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh-CCEEEEEECCEE
Confidence 46779999998 689999999999999999999999984 66653 59999999999999986 999999999888
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
+.
T Consensus 626 ~~ 627 (1490)
T TIGR01271 626 YF 627 (1490)
T ss_pred EE
Confidence 64
No 357
>PTZ00243 ABC transporter; Provisional
Probab=99.13 E-value=2.3e-10 Score=124.78 Aligned_cols=72 Identities=15% Similarity=0.310 Sum_probs=63.4
Q ss_pred hhHHHHHHhh-----CCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~-P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.||||++. +.+ |++|||||||++||+.+-+.+.+.|++. .+++|+|+++|.++.+.. ||+|++|++|+|+
T Consensus 1446 LSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~-~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1446 YSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSA-FSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVA 1523 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH-CCCCEEEEEeccHHHHHh-CCEEEEEECCEEE
Confidence 4679999988 564 8999999999999999999999999885 358999999999998876 8998888877775
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.13 E-value=1.9e-10 Score=125.07 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=66.2
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--QKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l--~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-|.|||||++ ..+|++++|||||++||+...+.+++.+... ..+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~ 838 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGK 838 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCe
Confidence 45678999988 7899999999999999999999999988653 2358999999999999887 99999999998
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
++.
T Consensus 839 i~~ 841 (1522)
T TIGR00957 839 ISE 841 (1522)
T ss_pred EEe
Confidence 874
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=1.8e-10 Score=102.76 Aligned_cols=73 Identities=22% Similarity=0.385 Sum_probs=68.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.||||.+. .+.|++|+|||.|+.|||.+...+.+.-.++. +.+.|.+++||+|..|-..-+|.++|+.|+|+
T Consensus 150 SGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 150 SGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence 568999988 79999999999999999999999999998885 45889999999999999999999999999997
No 360
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.12 E-value=1.5e-10 Score=112.64 Aligned_cols=67 Identities=25% Similarity=0.439 Sum_probs=60.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.-|.|||||+. +.+|++++|||||++||+.+.+.+.+.+.++. .|+|+|++||.++.+. .||+|++|
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 34669999988 78999999999999999999999999998874 6899999999999886 59999875
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.11 E-value=3.1e-10 Score=123.72 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=64.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|||||+. ..+|++++|||||++||+.....+++.+......|+|+|++||+++.+. .||+|++|++|++++
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~ 861 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEF 861 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE
Confidence 4668999988 7899999999999999999998887643222235899999999999986 599999999999875
Q ss_pred cccc
Q psy859 89 RRNC 92 (247)
Q Consensus 89 ~~~~ 92 (247)
..+.
T Consensus 862 ~G~~ 865 (1560)
T PTZ00243 862 SGSS 865 (1560)
T ss_pred ecCH
Confidence 4333
No 362
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.10 E-value=2.2e-10 Score=115.40 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=60.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
.-|.|||||+. +++|+++||||||+|||+.....+.+.+++ .|+|+|++||+++.+ ..||++++|+.
T Consensus 582 ~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 46789999988 789999999999999999999999998865 389999999999987 46999999973
No 363
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.10 E-value=2.7e-10 Score=101.16 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=58.7
Q ss_pred hhhHHHHHHhhC---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWGI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~~---------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
..|.+|||++.+ .+|+++++||||+|||+..+..+++.++++. +|.|+|++||. .++...||+++-+.
T Consensus 166 ~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 166 ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred ccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 457788888873 4789999999999999999999999999984 58999999999 56666799998876
No 364
>PLN03232 ABC transporter C family member; Provisional
Probab=99.08 E-value=4.9e-10 Score=121.78 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=64.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~-l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ ..+|++++|||||++||+...+.+.+. +... .+|+|+|++||.++.+.. ||+|++|++|+++
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~-aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPL-MDRIILVSEGMIK 818 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHh-CCEEEEEeCCEEE
Confidence 4668999998 789999999999999999999988764 5443 468999999999998664 9999999999987
Q ss_pred ecccc
Q psy859 88 KRRNC 92 (247)
Q Consensus 88 ~~~~~ 92 (247)
.+.+.
T Consensus 819 ~~Gt~ 823 (1495)
T PLN03232 819 EEGTF 823 (1495)
T ss_pred EecCH
Confidence 54433
No 365
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.06 E-value=6.7e-10 Score=97.99 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=62.8
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
|-||+|.+- +.+|++|+||||++|+.-.......++++.+ +.+.+|+++-|+|..+..++++|.+|+.|.+
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l-a~~hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL-AGKHSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH-hcCceEEEEeccHHHHHHhhheeEEEeccce
Confidence 337777766 5799999999999999999999999999998 4578999999999999999999999987665
No 366
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.06 E-value=9.3e-10 Score=93.97 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=61.6
Q ss_pred hhhhHHHHHHhh----C-----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG----I-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~----~-----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
..-|.|||+++. + .+|+++++|||++|||+..+..+.+.+.++.+.|.|+|++||+.+.+. .||+++.+.
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~ 171 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVL 171 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEE
Confidence 335778877776 1 589999999999999999999999999998777899999999998775 799999986
Q ss_pred C
Q psy859 83 G 83 (247)
Q Consensus 83 ~ 83 (247)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
No 367
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=5e-10 Score=101.26 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=60.0
Q ss_pred hhHHHHHHhhC-----C----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 14 CILIQRQSWGI-----G----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 14 ~~~~~r~~~~~-----~----~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
-|.||+|++.+ . +|++++|||||+|||+..+..+++.+.++. ++.|+|++||+++.. ..||++++|.+|
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~-~~~d~~~~l~~~ 248 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVA-AMADNHFLVEKE 248 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHH-HhcCcEEEEEEe
Confidence 46677777661 1 999999999999999999999999999875 479999999999854 689999999876
Q ss_pred E
Q psy859 85 E 85 (247)
Q Consensus 85 ~ 85 (247)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 3
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.05 E-value=4.3e-10 Score=111.09 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=65.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEeec
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRKR 89 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~~ 89 (247)
|.|+|.|++ +.+|++|+|||||+.||..+..++-+.|..+ +| |+|++||+-+....+|++|+-++.|++..|
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 345555554 8999999999999999999999999999864 47 999999999999999999999999999876
Q ss_pred cc
Q psy859 90 RN 91 (247)
Q Consensus 90 ~~ 91 (247)
.+
T Consensus 232 ~G 233 (530)
T COG0488 232 KG 233 (530)
T ss_pred cC
Confidence 65
No 369
>PLN03130 ABC transporter C family member; Provisional
Probab=99.03 E-value=1.1e-09 Score=119.78 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=65.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||++ ..+|++++|||||++||+...+.+.+ ++..+ .+|+|+|++||.++.+.. ||+|++|++|+++
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~-l~~kTvIlVTH~l~~l~~-aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE-LRGKTRVLVTNQLHFLSQ-VDRIILVHEGMIK 818 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH-hcCCEEEEEECCHhHHHh-CCEEEEEeCCEEE
Confidence 4678999988 78999999999999999998888764 56554 368999999999987765 9999999999987
Q ss_pred eccccch
Q psy859 88 KRRNCLS 94 (247)
Q Consensus 88 ~~~~~~~ 94 (247)
++.+..+
T Consensus 819 e~Gt~~e 825 (1622)
T PLN03130 819 EEGTYEE 825 (1622)
T ss_pred EeCCHHH
Confidence 5444433
No 370
>KOG0058|consensus
Probab=99.00 E-value=8.8e-10 Score=111.03 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=64.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.|.|||||++ +.||.+|||||-||.||..+-..+.+.+.++. +++|||++.|-++.++. ||+|+++++|+++
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV 681 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhHhhh-ccEEEEEcCCeEE
Confidence 4669999998 78999999999999999999999999998864 46999999999999997 8888888877775
No 371
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.00 E-value=1.2e-09 Score=94.79 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=64.0
Q ss_pred HHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 16 LIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 16 ~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.|..||++ ...|++||.||||-.||..+-.++.+++-.+. +.|.|.+++||+..-+.+ |+|.+.|..|+++
T Consensus 149 GGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred chHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 35556665 78999999999999999999999999999884 569999999999999987 9999999999986
No 372
>KOG0057|consensus
Probab=98.98 E-value=1.7e-09 Score=106.39 Aligned_cols=72 Identities=17% Similarity=0.402 Sum_probs=63.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
=|.|+|||+. +.||+++++||||+.||..+-+++.+.+.+ ...|+|+|++-|+++.+.. ||+|+++++|++.
T Consensus 488 LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 488 LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVK 564 (591)
T ss_pred cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhc-CCEEEEEECCeeE
Confidence 3567788877 789999999999999999999999999988 4679999999999999887 8888888877664
No 373
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.3e-09 Score=96.43 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=66.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||-- ..+.+.++||||.+.||......+.+.++++.++ |+||+++=|++..|...+|+|+-|++|++
T Consensus 135 ~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~v 214 (252)
T COG4604 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214 (252)
T ss_pred hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEE
Confidence 34668888866 5799999999999999999999999999999765 99999999999999998888888887776
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 215 v 215 (252)
T COG4604 215 V 215 (252)
T ss_pred E
Confidence 5
No 374
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.97 E-value=2.8e-09 Score=89.00 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=52.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
+|+++++|||++|+||..+..+.+.+.++..+|.++|++||+.+.++. +|+++.|..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~-~d~~~~l~~ 155 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL-ADKLIHIKK 155 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh-hhhEEEEEE
Confidence 899999999999999999999999998875558999999999999874 899999974
No 375
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=2.5e-09 Score=112.56 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=64.1
Q ss_pred hhhhHHHHHHhhC-------------C--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC
Q psy859 12 PACILIQRQSWGI-------------G--DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 12 ~~~~~~~r~~~~~-------------~--~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d 76 (247)
-..|.||++++.+ + +|+++||||||+|||+.++..+++.|..+...|++|+|+||+++..+.+|+
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 3456677666551 2 799999999999999999999999999998789999999999999999999
Q ss_pred EEEEEeCC
Q psy859 77 RLTIMRGN 84 (247)
Q Consensus 77 rV~ii~~G 84 (247)
+|.|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999754
No 376
>KOG0055|consensus
Probab=98.92 E-value=2.9e-09 Score=112.48 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=63.5
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||||.+ +.||++|+|||-||.||..+-+-+.+.|.+. ..|+|.|++.|-++.+.. ||.|+++++|+|+
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVV 1203 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchhhhhc-CCEEEEEECCEEE
Confidence 568999998 7899999999999999999999999999885 569999999999999987 7888877766665
No 377
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.92 E-value=2.9e-09 Score=104.17 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=64.8
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
|.|||||.+ .++|.+++||||-+.||..+-..+.+.|...+++|.|++++||-.+-.. .+|+|++|++|++
T Consensus 474 SgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~ 549 (580)
T COG4618 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRI 549 (580)
T ss_pred CchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChH
Confidence 569999998 7999999999999999999999999999999999999999999999766 4888888887665
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.91 E-value=1.4e-09 Score=94.93 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=59.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
...+++++|||.++||...+..+..++..++..|.+|||++|+++-.-+.+|+++++.+|++.
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~ 211 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE
Confidence 355899999999999999999999999999999999999999999999999999999998875
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.91 E-value=4e-09 Score=102.64 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=66.9
Q ss_pred HHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 17 IQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 17 ~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
|..||+- ..+|++||+..||.|||..+...+++.|.+.++.|++|+++|.++||+-++||||++|.+|+++.
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 5555555 67999999999999999999999999999999999999999999999999999999999999974
No 380
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.90 E-value=3.4e-09 Score=91.87 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCCCCCCcchhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcC
Q psy859 3 PSSLQPSESPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~d 76 (247)
|.+.=+++.-..|.|.||+.+ ...|++|+|||||+.||+..++.+-++|..+. .+..+|+.+||+-+++-+.+|
T Consensus 123 ~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~ 202 (223)
T COG4619 123 PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHAD 202 (223)
T ss_pred chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhh
Confidence 444456677778888888887 57899999999999999999999999999985 678999999999999999999
Q ss_pred EEEEEeCCEEe
Q psy859 77 RLTIMRGNELR 87 (247)
Q Consensus 77 rV~ii~~G~i~ 87 (247)
+++-+..|++-
T Consensus 203 k~itl~~G~~~ 213 (223)
T COG4619 203 KVITLQPGHAG 213 (223)
T ss_pred eEEEeccCccc
Confidence 99999988764
No 381
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.90 E-value=3.5e-09 Score=104.91 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=62.5
Q ss_pred hhhHHHHHHhh-----CC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----IG----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~----~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..|.||++|+. +. +|+++|||||++|||+..+..+.+.|+++. +|.+||++||++..+. .||++++|.+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 46788888777 23 479999999999999999999999999986 4899999999999886 7999999998
Q ss_pred CE
Q psy859 84 NE 85 (247)
Q Consensus 84 G~ 85 (247)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
No 382
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1e-08 Score=91.91 Aligned_cols=73 Identities=15% Similarity=0.284 Sum_probs=60.8
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhc-CEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALC-NRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~-drV~ii~~G~i~ 87 (247)
|.|.|+|.- +.+|+++|||||=||||..+-+.+.+.+.++++.|.+++++||+-.-+..+- |+|.+|.+|+|+
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 445555433 7899999999999999999999999999999999999999999988777653 777777665554
No 383
>KOG0927|consensus
Probab=98.78 E-value=7.5e-09 Score=101.88 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCCCCCcchhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE
Q psy859 4 SSLQPSESPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78 (247)
Q Consensus 4 ~~~~~~~~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV 78 (247)
+++|.+-..-.|.|+|.|.+ .-+|++|+|||||+|||+.+..++-+.|.++. ++ ++++++|+-+.+..+|.+|
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QDfln~vCT~I 289 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQDFLNGVCTNI 289 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchhhhhhHhhhh
Confidence 45666666666777766655 78999999999999999999999999998762 23 9999999999999999999
Q ss_pred EEEeCCEEeeccccch
Q psy859 79 TIMRGNELRKRRNCLS 94 (247)
Q Consensus 79 ~ii~~G~i~~~~~~~~ 94 (247)
+-+..++.+.|++.-+
T Consensus 290 i~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 290 IHLDNKKLIYYEGNYD 305 (614)
T ss_pred heecccceeeecCCHH
Confidence 9999999887777644
No 384
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.77 E-value=1.1e-08 Score=99.67 Aligned_cols=54 Identities=28% Similarity=0.450 Sum_probs=48.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
=|.|||||++ +.+|++++|||||++||+.+.+.+.+.+.++ .+++|+|++||.+
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 4679999998 7899999999999999999999999999875 4689999999974
No 385
>PRK03918 chromosome segregation protein; Provisional
Probab=98.77 E-value=2.4e-08 Score=102.45 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=60.0
Q ss_pred hhhHHHHHHh-----------hCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSW-----------GIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~-----------~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
..|.||++++ .+++|+++||||||+|||+..+..+.++|..+...|.+||++||+++ +...||++++|
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~-~~~~~d~~~~l 866 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE-LKDAADYVIRV 866 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHhCCeEEEE
Confidence 4577787732 25799999999999999999999999999988667889999999987 55689999999
Q ss_pred eC
Q psy859 82 RG 83 (247)
Q Consensus 82 ~~ 83 (247)
.+
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 84
No 386
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=1.4e-08 Score=89.73 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=51.8
Q ss_pred CCCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEP---TsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
+.+|+++||||| |+++|+.++. |..+..+.+ .|.+++++||+ .++..+||++..+++|++.
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVT 171 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEE
Confidence 589999999999 8999999885 445555543 48999999995 8889999999999999986
No 387
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.76 E-value=9.8e-09 Score=100.30 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=60.3
Q ss_pred hhhHHHHHHhhC---------------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC
Q psy859 13 ACILIQRQSWGI---------------GDPPLVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 13 ~~~~~~r~~~~~---------------~~P~lLiLDEPT-sGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d 76 (247)
.-|.|||+++.+ .+|+++|||||| +|||+.++..+++.|.++ .|.|||++||+.+..+ .||
T Consensus 468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~-~~d 544 (562)
T PHA02562 468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQ-KFD 544 (562)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchh-hhh
Confidence 457788887773 499999999998 689999999999999987 5899999999977664 699
Q ss_pred EEEEEeC-CEE
Q psy859 77 RLTIMRG-NEL 86 (247)
Q Consensus 77 rV~ii~~-G~i 86 (247)
++++|.+ |+.
T Consensus 545 ~~~~l~~~~~~ 555 (562)
T PHA02562 545 RHLKMEKVGRF 555 (562)
T ss_pred cEEEEEEECCe
Confidence 9999986 554
No 388
>KOG0065|consensus
Probab=98.76 E-value=6.6e-09 Score=110.33 Aligned_cols=73 Identities=27% Similarity=0.449 Sum_probs=62.9
Q ss_pred HHHHHHhh-----CCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEEeCC-EEe
Q psy859 16 LIQRQSWG-----IGDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIMRGN-ELR 87 (247)
Q Consensus 16 ~~~r~~~~-----~~~P-~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii~~G-~i~ 87 (247)
..||+|+. +.+| .+|+|||||+|||..+..-+.+++++++..|+||+-|=|..+ ++-+-.|++++|++| +.|
T Consensus 932 ~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen 932 TEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTV 1011 (1391)
T ss_pred HHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEE
Confidence 46788887 6899 999999999999999999999999999999999999999873 455568999999754 555
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 1012 Y 1012 (1391)
T KOG0065|consen 1012 Y 1012 (1391)
T ss_pred E
Confidence 3
No 389
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.74 E-value=3.3e-08 Score=97.83 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=63.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|+|.|+. ..+|.+|||||||+-||..++..+-+.|.++ .-|||++||+...++++|++++.+.+ ++.
T Consensus 439 ~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~ 514 (530)
T COG0488 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVE 514 (530)
T ss_pred hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-cee
Confidence 44667777776 7899999999999999999999999999776 46999999999999999999999997 554
No 390
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.74 E-value=3e-08 Score=85.40 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=53.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i-~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..+|+++|+|||++|+||..+..+ +.++..+.+.|.++|++||+.+.+. .|+++..++.|++.
T Consensus 106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHME 169 (202)
T ss_pred ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEE
Confidence 679999999999999999988876 4567777777999999999987766 68888888888875
No 391
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.73 E-value=3.3e-08 Score=101.06 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=83.2
Q ss_pred CCCcchhhhHHHHHHhh------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEE
Q psy859 7 QPSESPACILIQRQSWG------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTI 80 (247)
Q Consensus 7 ~~~~~~~~~~~~r~~~~------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~i 80 (247)
||.-++.|...||.|++ ....-+.||||||+||=+.-.+++.+.|.++...|-|||++-|+|+.+.. ||.|+=
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~-AD~IID 896 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT-ADWIID 896 (935)
T ss_pred CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEee-cCEEEE
Confidence 88889999999999999 45667999999999999999999999999999999999999999997764 998877
Q ss_pred Ee-CCEEeeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHH
Q psy859 81 MR-GNELRKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQ 143 (247)
Q Consensus 81 i~-~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~ 143 (247)
|. .|-- ..|+++|.|||+++.+
T Consensus 897 LGPeGG~-----------------------------------------~GG~iva~GTPeeva~ 919 (935)
T COG0178 897 LGPEGGD-----------------------------------------GGGEIVASGTPEEVAK 919 (935)
T ss_pred cCCCCCC-----------------------------------------CCceEEEecCHHHHHh
Confidence 74 2211 3789999999999977
No 392
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.72 E-value=1.7e-08 Score=90.98 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=59.1
Q ss_pred hhHHHHHHhhC--------------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhc---C
Q psy859 14 CILIQRQSWGI--------------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALC---N 76 (247)
Q Consensus 14 ~~~~~r~~~~~--------------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~---d 76 (247)
+|.||++++.+ .+|+++++||||++|||..+..+++.+.++ + .+++++|+.+++..+| .
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccchhccCc
Confidence 57788877762 599999999999999999999999999765 2 5778888888888888 7
Q ss_pred EEEEEeCCEE
Q psy859 77 RLTIMRGNEL 86 (247)
Q Consensus 77 rV~ii~~G~i 86 (247)
+++.+++|++
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 8999999986
No 393
>PRK10869 recombination and repair protein; Provisional
Probab=98.71 E-value=7.1e-08 Score=95.80 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=62.0
Q ss_pred hhhHHHHHHhh-----C----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----I----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..|.||++|+. + .+|+++|+|||++|||+.....+++.++++. ++.+||++||.+..+ ..||+.+.+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~-~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVA-GCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEec
Confidence 46788888877 2 3699999999999999999999999999985 479999999999877 68999999987
Q ss_pred CE
Q psy859 84 NE 85 (247)
Q Consensus 84 G~ 85 (247)
+.
T Consensus 508 ~~ 509 (553)
T PRK10869 508 ET 509 (553)
T ss_pred cc
Confidence 53
No 394
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.67 E-value=8.2e-08 Score=83.35 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=48.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEcCCHHHHHhh--cCEEEEEe
Q psy859 26 DPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHSMDECEAL--CNRLTIMR 82 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i-~~~l~~l~~~G~TIllsSH~l~e~e~l--~drV~ii~ 82 (247)
+|+++++|||++|+|+..+..+ +.++..+.+.|.|+|++||+++++..+ .++|..++
T Consensus 105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence 9999999999999999999876 557888877799999999999999887 55665554
No 395
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.3e-08 Score=92.85 Aligned_cols=73 Identities=18% Similarity=0.394 Sum_probs=64.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|.|||++ +.+|++++|||.|+.||..+-+++...+++. ..|+|-+++.|-++.+-. ||.|++|++|+|++
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~-~~~rttlviahrlsti~~-adeiivl~~g~i~e 477 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV-SAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE 477 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHH-hCCCeEEEEeehhhhccC-CceEEEeeCCEEEe
Confidence 3456677777 6899999999999999999999999999986 579999999999999987 89999999887763
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.62 E-value=7.5e-08 Score=86.32 Aligned_cols=65 Identities=20% Similarity=0.513 Sum_probs=60.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
...|++||.||||+.++|..+..++.++.++.. +|.||+++||++..+.+-||++-+|..|.-++
T Consensus 174 AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 174 ANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 (330)
T ss_pred ccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccccc
Confidence 579999999999999999999999999999964 59999999999999999999999999998763
No 397
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=8e-08 Score=103.58 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=57.4
Q ss_pred hhhhHHHHH------Hhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCcEEEEEcCCHHHHHhhc
Q psy859 12 PACILIQRQ------SWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-----KTGQSIVLTSHSMDECEALC 75 (247)
Q Consensus 12 ~~~~~~~r~------~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-----~~G~TIllsSH~l~e~e~l~ 75 (247)
-.||.|||+ +++ +.+|++++|||||+|||+.....+.+.|..+. ..|.|||++||+++++..+|
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 369999999 776 68999999999999999999999999988863 24889999999999999987
Q ss_pred C
Q psy859 76 N 76 (247)
Q Consensus 76 d 76 (247)
.
T Consensus 1278 ~ 1278 (1311)
T TIGR00606 1278 R 1278 (1311)
T ss_pred h
Confidence 4
No 398
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.60 E-value=1.2e-07 Score=100.19 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=63.5
Q ss_pred hhhhHHHHHHhh----C---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE
Q psy859 12 PACILIQRQSWG----I---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78 (247)
Q Consensus 12 ~~~~~~~r~~~~----~---------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV 78 (247)
-..|.|+++++. + .+|+++|+||||+|||+.++..+++.|..+...|+||+|+||..+..+++..+|
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi 1027 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQI 1027 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceE
Confidence 345667776665 2 279999999999999999999999999999888999999999999999999999
Q ss_pred EEEeC
Q psy859 79 TIMRG 83 (247)
Q Consensus 79 ~ii~~ 83 (247)
.|...
T Consensus 1028 ~V~k~ 1032 (1047)
T PRK10246 1028 KVKKI 1032 (1047)
T ss_pred EEEEC
Confidence 99975
No 399
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.57 E-value=1.7e-07 Score=80.00 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i-~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
+.+|+++++|||++|+||..+..+ +.++..+.++ |.++|++||++ ++.++|++-.-+..++
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~-~l~~~~~~~~~v~~~~ 138 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH-ELTKLADEHPGVRNLH 138 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH-HHHHHhhcCccceEEE
Confidence 459999999999999999977775 5667777664 89999999999 4777887643344433
No 400
>PRK01156 chromosome segregation protein; Provisional
Probab=98.57 E-value=1.7e-07 Score=97.12 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=60.2
Q ss_pred chhhhHHHHHHhh-----------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhC-C-cEEEEEcCCHHHHHhhcC
Q psy859 11 SPACILIQRQSWG-----------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKT-G-QSIVLTSHSMDECEALCN 76 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l-~~~-G-~TIllsSH~l~e~e~l~d 76 (247)
...+|.|++++++ ..+|++++|||||+|||+..+..+.+++... +.. | .+||++||+++.+ ..||
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d 877 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVAD 877 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcC
Confidence 4568889988764 4699999999999999999999999999864 333 4 4899999999977 5799
Q ss_pred EEEEEe
Q psy859 77 RLTIMR 82 (247)
Q Consensus 77 rV~ii~ 82 (247)
+++.+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 401
>KOG0062|consensus
Probab=98.56 E-value=1.5e-07 Score=92.43 Aligned_cols=70 Identities=27% Similarity=0.359 Sum_probs=62.5
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.||+-|++ ..+|-+|+|||||+-||..+...+...|+.+ +-.|+++||+.+.+..+|+.+|+..+|++.
T Consensus 484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 456666665 6799999999999999999999999999876 357999999999999999999999999997
No 402
>PRK00064 recF recombination protein F; Reviewed
Probab=98.54 E-value=1.8e-07 Score=88.11 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=61.2
Q ss_pred hhhhHHHHHHhh--------------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhc--
Q psy859 12 PACILIQRQSWG--------------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALC-- 75 (247)
Q Consensus 12 ~~~~~~~r~~~~--------------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~-- 75 (247)
..+|.||++++. .++|++++||||+++||+..+..+++.+.++ +..+++|||+++.+..++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhcc
Confidence 467788877776 2699999999999999999999999988654 458999999999888875
Q ss_pred CEEEEEeCCEE
Q psy859 76 NRLTIMRGNEL 86 (247)
Q Consensus 76 drV~ii~~G~i 86 (247)
++++.|++|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 47999999987
No 403
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.53 E-value=3.2e-07 Score=80.81 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=65.6
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
+-+|+||++ +.+|+++|.||..++||...|..+.+++.++.++ |.+.|.++.++..+.-++|.|++|+.|+++
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence 446667666 8899999999999999999999999999999654 999999999999999999999999987776
No 404
>KOG0054|consensus
Probab=98.52 E-value=3.2e-07 Score=98.76 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=60.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||||.. -.++++++||-|.+.+|....+.+.+-.-.-.-+++|+|++||.+..... ||.|++|++|+|+
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEe
Confidence 458888887 57999999999999999999999887443433568999999999998876 8888888877775
No 405
>KOG0054|consensus
Probab=98.49 E-value=3.1e-07 Score=98.87 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=78.8
Q ss_pred CCCCCCCcchhh---hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh
Q psy859 3 PSSLQPSESPAC---ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL 74 (247)
Q Consensus 3 ~~~~~~~~~~~~---~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l 74 (247)
|..|+.+-+..| |.||||-+- +.+.++|+|||.|+.+|+.+-..+.+.|++- =.+.|||.+.|-++.+..
T Consensus 1262 p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~TVmd- 1339 (1381)
T KOG0054|consen 1262 PGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLNTVMD- 1339 (1381)
T ss_pred CcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccchhhh-
Confidence 444555545443 569999776 7899999999999999999999999999873 348999999999999998
Q ss_pred cCEEEEEeCCEEeeccccchhhhh
Q psy859 75 CNRLTIMRGNELRKRRNCLSFRKE 98 (247)
Q Consensus 75 ~drV~ii~~G~i~~~~~~~~~~~~ 98 (247)
||||++|++|++++++.|..+...
T Consensus 1340 ~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1340 SDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred cCeEEEeeCCeEeecCChHHHHhC
Confidence 999999999999988777665544
No 406
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.48 E-value=2.1e-07 Score=96.74 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=58.1
Q ss_pred hhhhHHHHHHhhC---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWGI---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~~---------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-..|.||++++.+ .+|+++|||||++|||+..+..++++|..+.+ +.+||++||+++.+ ..||+++.+.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~-~~~d~~~~~~ 1165 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTM-EVADQLYGVT 1165 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHH-HHhhhHeeee
Confidence 3567788777762 56799999999999999999999999999854 58899999999987 4699987664
No 407
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.42 E-value=8.9e-07 Score=77.39 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=45.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEcCCHHHHHhhcC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~-i~~~l~~l~~~G~TIllsSH~l~e~e~l~d 76 (247)
+.+|++++||||++|+||..+.. .+..+..+.+.|.++|++||+.+.++.+++
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 57899999999999999977666 456777777789999999999999998775
No 408
>KOG0927|consensus
Probab=98.40 E-value=2.8e-07 Score=91.01 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=62.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|-|||.|+. +..|.+|+|||||+|||......+.++|.++ .-+|+++||++-.+..+++++++..+|.+.
T Consensus 511 S~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 511 SDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred ccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 346766665 7899999999999999999999999999775 458999999999999999999999999886
No 409
>KOG2355|consensus
Probab=98.37 E-value=4.8e-07 Score=80.86 Aligned_cols=74 Identities=24% Similarity=0.300 Sum_probs=67.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|-|||+|++ ++.-++|+|||.|..||..+|..+.+++++-. .+|.||+..||..+-.+.-..+++.|+.|+++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 3458899988 56779999999999999999999999999875 46999999999999999999999999999997
No 410
>KOG0056|consensus
Probab=98.35 E-value=6.3e-07 Score=88.19 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=64.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
++-|.|.|||++ ..+|.+++|||.|+.||...-+.+...+.+++ .++|-|++.|-++.+-. ||-|++|++|+|
T Consensus 673 LkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLSTivn-AD~ILvi~~G~I 750 (790)
T KOG0056|consen 673 LKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLSTIVN-ADLILVISNGRI 750 (790)
T ss_pred cccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehheec-ccEEEEEeCCeE
Confidence 344556677776 68999999999999999999999999999985 58999999999999887 999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 751 v 751 (790)
T KOG0056|consen 751 V 751 (790)
T ss_pred e
Confidence 6
No 411
>KOG0062|consensus
Probab=98.33 E-value=2.6e-07 Score=90.78 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCCcchhhhHHHHHHhh---CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 6 LQPSESPACILIQRQSWG---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 6 ~~~~~~~~~~~~~r~~~~---~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.|+--++.|.-.||..++ ..+||+|+|||||+-||..+..++-+.|..+ +.|+|++||+-.....+|.-|+-.+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~tdIIH~~ 269 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNFLNTVCTDIIHLE 269 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHHHHHHHHHHHHHh
Confidence 355566777778888888 8899999999999999999999999998775 4899999999999999999999998
Q ss_pred CCEEeeccc
Q psy859 83 GNELRKRRN 91 (247)
Q Consensus 83 ~G~i~~~~~ 91 (247)
.-++-.|.+
T Consensus 270 ~~kL~~YkG 278 (582)
T KOG0062|consen 270 NLKLDYYKG 278 (582)
T ss_pred hhhhhhhcC
Confidence 766654433
No 412
>PRK02224 chromosome segregation protein; Provisional
Probab=98.32 E-value=9.5e-07 Score=91.12 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=50.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 28 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 28 ~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~-TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
+++||||||+|||+..+..+.++|..+...|. +||++||+.+.+. .||+++.|.++.
T Consensus 813 ~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~-~ad~~~~~~~~~ 870 (880)
T PRK02224 813 PPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG-AADDLVRVEKDP 870 (880)
T ss_pred CceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH-hcCeeEEeecCC
Confidence 67999999999999999999999999876665 8999999999886 599999997543
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.29 E-value=4.1e-06 Score=86.08 Aligned_cols=95 Identities=21% Similarity=0.250 Sum_probs=79.0
Q ss_pred CcchhhhHHHHHHhh--C---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 9 SESPACILIQRQSWG--I---GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 9 ~~~~~~~~~~r~~~~--~---~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..++.|...||.|++ + .--=+.+||||+.||=+.--.++.+.|+.|+..|-|+|++.|+-+.+.. ||+|+=|.=
T Consensus 479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~-AD~iIDiGP 557 (935)
T COG0178 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA-ADHIIDIGP 557 (935)
T ss_pred CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh-cCEEEeeCC
Confidence 456677778888887 2 2335789999999999999999999999999999999999999987775 999988864
Q ss_pred CEEeeccccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHHHHh
Q psy859 84 NELRKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQR 144 (247)
Q Consensus 84 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~ 144 (247)
|.= .+.|++++.|+++++++.
T Consensus 558 gAG----------------------------------------~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 558 GAG----------------------------------------EHGGEIVAEGTPEELLAN 578 (935)
T ss_pred CCC----------------------------------------cCCCEEEEccCHHHHHhC
Confidence 432 258999999999999865
No 414
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.4e-06 Score=74.97 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=50.6
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
|.||++|++ +..+++.|||||+++||..+...+-.++.....+|--||+|||..--+
T Consensus 132 SAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred chhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 558888877 789999999999999999999999999999888888999999986544
No 415
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.21 E-value=3.6e-06 Score=88.01 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=58.2
Q ss_pred hhhhHHHHHHhh---------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG---------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~---------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-..|.|+|++++ ..+|+++|||||++|||+..+..+.++|.++.. +..+|++||+...+ .+||+++.+.
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~-~~~d~~~~~~ 1150 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMI-EYADRAIGVT 1150 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHH-HhcceeEeEE
Confidence 356778877776 247899999999999999999999999998754 57899999998755 6899988775
Q ss_pred C
Q psy859 83 G 83 (247)
Q Consensus 83 ~ 83 (247)
.
T Consensus 1151 ~ 1151 (1164)
T TIGR02169 1151 M 1151 (1164)
T ss_pred E
Confidence 3
No 416
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.19 E-value=2.1e-06 Score=71.54 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=54.4
Q ss_pred CCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEcCCHHH---------HHhhcCEEEEEeC
Q psy859 24 IGDPPLVFLDEPTSGVD---PISRHRLWAVLSQIQKTGQSIVLTSHSMDE---------CEALCNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLD---p~~r~~i~~~l~~l~~~G~TIllsSH~l~e---------~e~l~drV~ii~~ 83 (247)
..+|+++++|||++.+| +..+..+++++..+++.|.|+|+++|.... ++.+||.|+.|+.
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 57999999999999999 888999999999988889999999998875 7899999999983
No 417
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=98.18 E-value=3.3e-05 Score=57.39 Aligned_cols=82 Identities=23% Similarity=0.495 Sum_probs=55.4
Q ss_pred CChHHHHHhhCCceEEEEEecCCCHHHHHHHHHhhccCceE-EeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCccc
Q psy859 136 GNITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVE-IKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVE 214 (247)
Q Consensus 136 Gt~~~L~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~ 214 (247)
|++.++|++|+... +.+... +....+.+ .+ .+. +.....+.+.+.+.+.. ....+++.+.. ... |.
T Consensus 1 G~~~eiK~~~~~~~-~~i~~~-~~~~~l~~-----~~-~v~~v~~~~~~~~~i~l~~~~-~~~~ll~~l~~---~g~-I~ 67 (84)
T PF13732_consen 1 GTLEEIKKQYGKNK-ITIETD-GDLEELEE-----LP-GVESVEQDGDGKLRIKLEDEE-TANELLQELIE---KGI-IR 67 (84)
T ss_pred CCHHHHHHHcCCCE-EEEEEC-CCHHHHhh-----CC-CeEEEEEeCCcEEEEEECCcc-cHHHHHHHHHh---CCC-ee
Confidence 89999999999864 667665 34444322 34 333 33234444788887654 45677765543 334 89
Q ss_pred EEEecCCCHHHHHHHH
Q psy859 215 DYSLSDTTLEQVFIAF 230 (247)
Q Consensus 215 ~~~~~~~sLEdvFl~~ 230 (247)
+|....|||+|||++.
T Consensus 68 ~f~~~~PSL~DIFi~~ 83 (84)
T PF13732_consen 68 SFEEEEPSLEDIFIEV 83 (84)
T ss_pred EEEEcCCCHHHHHHhh
Confidence 9999999999999975
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.15 E-value=4.2e-06 Score=73.54 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=47.5
Q ss_pred CCCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEP---TsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..+|.+++|||| |+++|+.+. .+.++..+.+. +.++|++||+. +...++|++..+.+|++.
T Consensus 107 ~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~ 171 (216)
T cd03284 107 ATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVA 171 (216)
T ss_pred CCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEE
Confidence 579999999999 777777552 34556666555 89999999996 566689988777888774
No 419
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=4.2e-06 Score=79.22 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=49.8
Q ss_pred chhhhHHHHHHhh--------------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHH
Q psy859 11 SPACILIQRQSWG--------------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72 (247)
Q Consensus 11 ~~~~~~~~r~~~~--------------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e 72 (247)
...||.||++++. .++|++++||||+++||+..+..+++.+... |..+++|||+++.+.
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 3457778877766 2489999999999999999999999999753 789999999998765
No 420
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.11 E-value=2.6e-06 Score=73.12 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=53.9
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l-~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
|.|||.|++ +..|+.++||||++.||..-|..+++.+ .+.++.|...+++||+..+++. -.||+=|
T Consensus 136 SGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa-gsrVie~ 207 (213)
T COG4136 136 SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA-GSRVIEM 207 (213)
T ss_pred CcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC-CCeeeee
Confidence 346665554 8999999999999999999999999965 4567789999999999999984 5555544
No 421
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=4e-06 Score=73.19 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=61.2
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
|.|.+||+- +.|-++|+|||||+.||...|+.+.++|.+-+.+|.+++=+=|+-+.=+.+|||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 345555554 679999999999999999999999999999888999999999999999999999998863
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.08 E-value=1.5e-05 Score=69.92 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=42.6
Q ss_pred CCCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC---CcEEEEEcCCHHHHHhh
Q psy859 24 IGDPPLVFLDEPTSGVDPIS-RHRLWAVLSQIQKT---GQSIVLTSHSMDECEAL 74 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~-r~~i~~~l~~l~~~---G~TIllsSH~l~e~e~l 74 (247)
..+|.+++||||++|+||.. ...++..++.+.+. +.++|++||+.+.++.+
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 68999999999999999975 45557788888654 35899999999999874
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.07 E-value=1.1e-05 Score=83.39 Aligned_cols=68 Identities=24% Similarity=0.252 Sum_probs=55.5
Q ss_pred hHHHHHHhh----CCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 15 ILIQRQSWG----IGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 15 ~~~~r~~~~----~~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
+.+|++... +.+|.+++||||++|+||.....+.. ++..+.+.|.++|++||+.+.+...+++..+++
T Consensus 392 S~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 392 SGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred HHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEE
Confidence 445555444 56999999999999999999998865 566677779999999999999998888776664
No 424
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.05 E-value=3e-06 Score=81.65 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=68.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l-~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.+-|.|||+|++ .-+.|++++||=.+.-||..|+.|+..+ ..+++.|+||+.+||+-..-.. |||++-+.+|+
T Consensus 447 ~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~-ADrll~~~~G~ 525 (546)
T COG4615 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH-ADRLLEMRNGQ 525 (546)
T ss_pred cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhh-HHHHHHHhcCc
Confidence 455779999998 6799999999999999999999999965 4567889999999999888774 99999999999
Q ss_pred Eeecc
Q psy859 86 LRKRR 90 (247)
Q Consensus 86 i~~~~ 90 (247)
+++.+
T Consensus 526 ~~e~t 530 (546)
T COG4615 526 LSELT 530 (546)
T ss_pred eeecc
Confidence 98644
No 425
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.01 E-value=1.7e-05 Score=77.67 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=67.1
Q ss_pred CcchhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 9 SESPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 9 ~~~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
++--.+|.|.=||++ ..+.++.++||||+=||...|-...+.|+++.+.+++|+++-|+|.....++|-|-|+..
T Consensus 209 r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 209 RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 344567777777776 579999999999999999999999999999988899999999999999999999999974
No 426
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.98 E-value=1.6e-05 Score=82.42 Aligned_cols=64 Identities=25% Similarity=0.460 Sum_probs=59.4
Q ss_pred CCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHH---------hhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE---------ALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL-Dp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e---------~l~drV~ii~~G~i~ 87 (247)
.++|.++++|||+.+| ||..+..+.+.++.+++.|.+++++||+++++. ..|+.+++|.+|++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 6899999999999999 799999999999999888999999999999986 579999999999874
No 427
>PRK14079 recF recombination protein F; Provisional
Probab=97.89 E-value=2.7e-05 Score=73.26 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=53.4
Q ss_pred hhhhHHHHHHhh--------------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCE
Q psy859 12 PACILIQRQSWG--------------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 12 ~~~~~~~r~~~~--------------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~dr 77 (247)
..||-||++++. .++|++++||||+++||+..+..+++.+... ..+++.+|+ ....|++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~----~~~~~~~ 334 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTE----APPGAAL 334 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCC----CCCCCce
Confidence 457778766665 2799999999999999999999999988653 234444443 4558999
Q ss_pred EEEEeCCEEe
Q psy859 78 LTIMRGNELR 87 (247)
Q Consensus 78 V~ii~~G~i~ 87 (247)
++.|.+|+++
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999999875
No 428
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.85 E-value=6.2e-05 Score=66.64 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=46.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CcEEEEEcCCHHHHHhhc
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAV-LSQIQKT-GQSIVLTSHSMDECEALC 75 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~-l~~l~~~-G~TIllsSH~l~e~e~l~ 75 (247)
..+|.+++||||++|++|.....+... +..+.+. +.+++++||+++.+..++
T Consensus 107 ~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 107 ATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 579999999999999999999987776 6667665 899999999999999876
No 429
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.78 E-value=7.1e-05 Score=68.43 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=46.4
Q ss_pred HHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH--H-----------HhhcCEEEEEe
Q psy859 16 LIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE--C-----------EALCNRLTIMR 82 (247)
Q Consensus 16 ~~~r~~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e--~-----------e~l~drV~ii~ 82 (247)
.+|...+..++|+++++|||++ ...+..++..+ ..|.|+|+|||+.+. + ..+++|+++|+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~ 256 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLS 256 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEe
Confidence 3566667778999999999974 23344455544 469999999996544 4 36689999999
Q ss_pred CCE
Q psy859 83 GNE 85 (247)
Q Consensus 83 ~G~ 85 (247)
+|+
T Consensus 257 ~~~ 259 (270)
T TIGR02858 257 RRK 259 (270)
T ss_pred cCC
Confidence 764
No 430
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.77 E-value=8.2e-05 Score=61.42 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=44.4
Q ss_pred hHHHHHHhh-------CCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH
Q psy859 15 ILIQRQSWG-------IGDP-PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70 (247)
Q Consensus 15 ~~~~r~~~~-------~~~P-~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e 70 (247)
|.|+++.+. ..+. .++++|||-++|.|..++.+.+.+......+.-+|+|||+..-
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchh
Confidence 667766633 2333 9999999999999999999999998875568999999999764
No 431
>KOG0066|consensus
Probab=97.73 E-value=4.2e-05 Score=74.92 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=53.7
Q ss_pred HHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 16 LIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 16 ~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.||+.|+. ++.|++|||||||+.||..+...+.+.|.++ .-.||++||+--.+-+.-=.+|++.+-.|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccceeeecCceEEEEccCCh
Confidence 35655554 7999999999999999999999999999876 35789999997766665556777765444
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.72 E-value=0.00011 Score=76.09 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=43.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i-~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
+.+|.++|+|||++|+||.....+ +.++..+.+.|.++|++||+.+....
T Consensus 400 ~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 400 TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 468999999999999999999998 56777787789999999999876543
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.69 E-value=0.00024 Score=61.30 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=42.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
..+.++++||||.++||+..+..++++|.++. ++.=+|++||.-...+. ||+.+-+.
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~-~~~Q~ii~Th~~~~~~~-a~~~~~v~ 212 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLADLLKELS-KQSQFIITTHNPEMFED-ADKLIGVT 212 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHHHHHHHT-TTSEEEEE-S-HHHHTT--SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccccc
Confidence 57899999999999999999999999999874 45789999999776665 78765553
No 434
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00017 Score=75.50 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=50.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 27 P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
-+++||||||..||+..+..+.+.+..+...|.+|+++||+-+..++ +|+++.+.+
T Consensus 842 l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~-~~~~i~V~k 897 (908)
T COG0419 842 LELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKER-ADVRIRVKK 897 (908)
T ss_pred CCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHh-CCeEEEEEe
Confidence 79999999999999999999999999998889999999999888776 777777753
No 435
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.62 E-value=8.8e-05 Score=80.81 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=47.1
Q ss_pred hhhhHHHHHHhh-----------------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 12 PACILIQRQSWG-----------------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 12 ~~~~~~~r~~~~-----------------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
-..|.||++++. .++|++++|||||+|+|+..+..+++++.++ |.++|||||.+
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 456778877773 3799999999999999999999999999887 89999999976
No 436
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.59 E-value=0.00019 Score=70.40 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=59.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
|.|..||++ ..++++.+||||++-||...|-.+.+.|++.. .+++|.+++-|++-.+..++||+++..
T Consensus 457 SGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 457 SGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred CchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 334455555 56999999999999999999999999999975 568999999999999999999999987
No 437
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=0.00019 Score=60.17 Aligned_cols=61 Identities=10% Similarity=0.249 Sum_probs=47.3
Q ss_pred hCCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 23 GIGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 23 ~~~~P~lLiLDE--PTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
.+.+|+++++|| |+.++|+.. .+.+..+.+.|.++|+++|. ..+...+|++..+.+|+|..
T Consensus 93 ~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~-~~~~~~~~~i~~~~~~~i~~ 155 (174)
T PRK13695 93 ALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHR-RSVHPFVQEIKSRPGGRVYE 155 (174)
T ss_pred ccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECc-hhhHHHHHHHhccCCcEEEE
Confidence 367999999999 444555444 45555544568999999998 56678899999999999864
No 438
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.53 E-value=0.00042 Score=61.53 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=42.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhC-CcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKT-GQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~-i~~~l~~l~~~-G~TIllsSH~l~e~e~ 73 (247)
..++.++|||||.+|.|+..... .+.++..+.+. +.++|++||+.+.++.
T Consensus 108 ~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 108 CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 56899999999999999877777 47788887765 8999999999998765
No 439
>KOG0065|consensus
Probab=97.45 E-value=0.00024 Score=76.49 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=63.5
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCH-HHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSM-DECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l-~e~e~l~drV~ii~~G~i~ 87 (247)
|.|+|+|+. ++++.++++||+|+|||..+.-++.+.++.+.. .+.|.+++=|.. +++-.+-|.|.+|.+|+++
T Consensus 262 SGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i 341 (1391)
T KOG0065|consen 262 SGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI 341 (1391)
T ss_pred cCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE
Confidence 347788877 789999999999999999999999999999964 477888766654 7888899999999999988
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 342 y 342 (1391)
T KOG0065|consen 342 Y 342 (1391)
T ss_pred E
Confidence 4
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.43 E-value=0.00016 Score=64.06 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-------HHHhhcCEEEEEe
Q psy859 24 IGDPPLVFLDEPTSGV----DPISRHRLWAVLSQIQKTGQSIVLTSHSMD-------ECEALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL----Dp~~r~~i~~~l~~l~~~G~TIllsSH~l~-------e~e~l~drV~ii~ 82 (247)
..+|+++++||||+++ |+..++.+++.++.+++.|.|+++++|.-. .++-+||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 4689999999999999 888899999999998777888877665321 1355677777776
No 441
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.38 E-value=0.0004 Score=69.99 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=51.9
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
|.|++||++ +++|++++|||-|++||+.+...+++++++- -.+.|||-++|--.- ..+.++.+-+
T Consensus 517 S~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~-lp~~tvISV~Hr~tl-~~~h~~~l~l 586 (604)
T COG4178 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE-LPDATVISVGHRPTL-WNFHSRQLEL 586 (604)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh-CCCCEEEEeccchhh-HHHHhhheee
Confidence 446777776 8999999999999999999999999999873 368999999998764 4445553333
No 442
>KOG0066|consensus
Probab=97.36 E-value=4.5e-05 Score=74.71 Aligned_cols=72 Identities=24% Similarity=0.352 Sum_probs=61.9
Q ss_pred HHHHHhh---CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEeeccc
Q psy859 17 IQRQSWG---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRKRRN 91 (247)
Q Consensus 17 ~~r~~~~---~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~~~~ 91 (247)
-||.+++ ...|-+|.|||||+-||-.+.-++-+.+.-++ +|++|+||+-.....+|..|+-++.-++.+|++
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrG 492 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRG 492 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHHHHHhhhhhhhhhhhcc
Confidence 3555555 67999999999999999999999988887774 699999999999999999999999888765443
No 443
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.24 E-value=0.00064 Score=66.21 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=47.8
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 34 EP--TSGVDPISRHRLWAVLSQIQK--TGQ-----SIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 34 EP--TsGLDp~~r~~i~~~l~~l~~--~G~-----TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
|| |.|+||.....+++++.++.. .|. ||++++|+|++ .+||++.+|.+|+++.
T Consensus 273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVL 334 (438)
T ss_pred CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEE
Confidence 65 889999999999999999863 585 99999999995 8999999999999984
No 444
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.13 E-value=0.0011 Score=58.10 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCCCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH-------HHhhcCEEEEEeC
Q psy859 24 IGDPPLVFLDEPTSG---VDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE-------CEALCNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEPTsG---LDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e-------~e~l~drV~ii~~ 83 (247)
-.+|+++++||||+. .|+.....+.+.++.+++.|.|+++++|.... ++.++|.++.|+.
T Consensus 118 ~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 118 SKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred hcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 359999999999964 45555555555566667779999999997654 5667777777764
No 445
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.08 E-value=0.0013 Score=68.87 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=47.3
Q ss_pred CCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL-Dp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
.++|.++++|||+.+| ||..+..+.+.++.+++.|.+++++||+++++..
T Consensus 685 ~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 685 KGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred cCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 7899999999999999 7999999999999998889999999999999986
No 446
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.96 E-value=0.001 Score=57.22 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=30.7
Q ss_pred CCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy859 24 IGDPPLVFLDEPT-----SGVDPISRHRLWAVLSQIQ 55 (247)
Q Consensus 24 ~~~P~lLiLDEPT-----sGLDp~~r~~i~~~l~~l~ 55 (247)
+.+|+++++|||| +||||..++.+.+.+++++
T Consensus 168 ~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 168 TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred hhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 7899999999999 9999999999999999985
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.70 E-value=0.003 Score=56.00 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.++--+.|||||-+||-|.-+.++...|+++.+.|.-+||.||+.=-..-=--+|+-++.|
T Consensus 144 f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecC
Confidence 5678899999999999999999999999999999999999999985433322334555443
No 448
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.68 E-value=0.0029 Score=65.64 Aligned_cols=50 Identities=26% Similarity=0.447 Sum_probs=46.0
Q ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLD-p~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
-++|.++++|||+.+|| |..+..+.+.++.+++.|.+++++||+++++..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 683 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDG 683 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhc
Confidence 57999999999999999 888999999999998889999999999998764
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.60 E-value=0.0052 Score=48.77 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=39.6
Q ss_pred hCCCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 23 GIGDPPLVFLDEPT----------SGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 23 ~~~~P~lLiLDEPT----------sGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
...+|+++++||++ .+.|+..++.+.+++...++.+.|+++++|.....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 36799999999999 45666767778888777766799999999987544
No 450
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.36 E-value=0.0056 Score=53.19 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=48.2
Q ss_pred CCCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC---------HHHHHhhcCEEEEEe
Q psy859 24 IGDPPLVFLDE-----PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS---------MDECEALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDE-----PTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~---------l~e~e~l~drV~ii~ 82 (247)
-.+++.+++|- |+.+.|+..+..++++++.+++.|.|+++++|. +..++.+||.|++|+
T Consensus 105 ~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 105 ELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred HhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 45789999994 344666777888999999998889999999995 344788999999996
No 451
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.29 E-value=0.0087 Score=62.07 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=46.8
Q ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVD-PISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLD-p~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
.+.|.++++|||..+|| |..+..+.+.++.+++.|..++++||+++++..
T Consensus 640 ~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred cCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 68999999999999999 999999999999998889999999999998775
No 452
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=96.04 E-value=0.0095 Score=45.53 Aligned_cols=28 Identities=43% Similarity=0.589 Sum_probs=25.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQ 53 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~ 53 (247)
.|++++||||+++||+..+..+.+++++
T Consensus 63 ~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 63 SPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 5899999999999999999999998864
No 453
>KOG0059|consensus
Probab=96.03 E-value=0.011 Score=62.24 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=55.2
Q ss_pred ChHHHHHhhCCceEEEEEecCCCHHHHHHHHHhhccCceEEeeecCCEEEEEEcCCCcCHHHHHHHHHHhhcCCCcccEE
Q psy859 137 NITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDY 216 (247)
Q Consensus 137 t~~~L~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~i~~~ 216 (247)
+...|++++|.++.+.+.. ++...+..+.| .+.+.... ...+.++....... .+..+. . +.+|
T Consensus 26 s~~~lk~~~g~gy~l~l~~------~~~~~~~~~~p-~~~~~~~~--~~~~~lp~~~~~~~-~~~~l~------~-~~~~ 88 (885)
T KOG0059|consen 26 SSLFLKRKLGSGYHLTLVL------QVTLFIQQHIP-DARLVECP--KLVYLLPLKYRREF-LFRGLD------L-IASF 88 (885)
T ss_pred cchHHHHhhCCCceEEeHH------HHHHHHHhhCc-cceecccc--cccccCChhccccc-hhhhhh------c-cccc
Confidence 8888999999999887754 56667777777 44443333 44455554432111 122111 1 6789
Q ss_pred EecCCCHHHHHHHHHhcCCCC
Q psy859 217 SLSDTTLEQVFIAFAKGRGQR 237 (247)
Q Consensus 217 ~~~~~sLEdvFl~~~~~~~~~ 237 (247)
.++.+++|+||+++.++..+.
T Consensus 89 ~~~~t~l~~vfl~~~~~~~~~ 109 (885)
T KOG0059|consen 89 GVSLTTLEEVFLKLGGESDSL 109 (885)
T ss_pred ccccccHHHHHhhcccccccc
Confidence 999999999999998865543
No 454
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.01 E-value=0.0044 Score=52.58 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=55.4
Q ss_pred HHHHhh---CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH--HHhhcCEEEEEeCCE
Q psy859 18 QRQSWG---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE--CEALCNRLTIMRGNE 85 (247)
Q Consensus 18 ~r~~~~---~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e--~e~l~drV~ii~~G~ 85 (247)
.|.+++ .++|..+..+| +.+||..++.+++.+.+....|.+|++.+|.+.+ ...+||.++++..+.
T Consensus 64 dr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 64 DRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 355565 78888877776 8999999999999998876667899999999976 788999999998653
No 455
>PF13175 AAA_15: AAA ATPase domain
Probab=95.90 E-value=0.014 Score=54.03 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=38.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHH
Q psy859 29 LVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDE 70 (247)
Q Consensus 29 lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e 70 (247)
++++|||-+-|-|.+++.+.+.|.++.. .+.-||+|||+..-
T Consensus 372 illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 372 ILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 9999999999999999999999999865 58999999998753
No 456
>KOG0063|consensus
Probab=95.85 E-value=0.019 Score=56.52 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=65.4
Q ss_pred chhhhHHHHHHhh---CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 11 SPACILIQRQSWG---IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 11 ~~~~~~~~r~~~~---~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
-+.++..||++++ +.+.++.++|||++-||...|......|+.+.....=||++-|+++...-+.|-+.++..
T Consensus 213 ~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 213 QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 3456667777777 679999999999999999999999999999988899999999999999999999999873
No 457
>KOG0060|consensus
Probab=95.84 E-value=0.015 Score=58.69 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=51.6
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
|.|..||++ .|+|++.||||-|+.+|...-.++++.+++ .|+|.|-++|--+- .+.=|-++-|+
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL-~kfHd~~L~~~ 640 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSL-WKFHDYVLRMD 640 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHH-HhhhhEEEEec
Confidence 556666666 799999999999999999999999998865 49999999998774 44445555554
No 458
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=95.30 E-value=0.03 Score=58.82 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=39.6
Q ss_pred CCCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCE
Q psy859 24 IGDPPLVFLDEP---TSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 24 ~~~P~lLiLDEP---TsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~dr 77 (247)
..++.++|+||| |+.+| +..-.|.++..+.+. |.+++++||+ .++..++++
T Consensus 684 at~~sLvllDE~GrGTs~~d--g~aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 684 ATERSLVLLDEIGRGTSTYD--GLSIAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred CCCCcEEEEecCCCCCCcch--hHHHHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 568999999999 77777 344577777777665 6899999999 666667765
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.24 E-value=0.03 Score=49.33 Aligned_cols=47 Identities=28% Similarity=0.330 Sum_probs=39.7
Q ss_pred CCCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHH
Q psy859 24 IGDPPLVFLDEPTS------GVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71 (247)
Q Consensus 24 ~~~P~lLiLDEPTs------GLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~ 71 (247)
..+|+++++| |++ ..|+.....+.+.+.++.+ .|.||++++|.....
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 5799999999 765 4799999999999988864 599999999987544
No 460
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.03 E-value=0.06 Score=52.98 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=58.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEAL-CNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l-~drV~ii~~G~i~ 87 (247)
...|.+++.||-.+-||+.+...+..-|.+++ +-|.|++++||..+...++ -|.++...-|+..
T Consensus 523 aerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 523 AERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 67899999999999999999999999999985 4599999999999999999 8999998877763
No 461
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.031 Score=52.39 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
+.-+ +++|||+.+||+.++..+.+.+.+.. .+.++|++||+.+.+..
T Consensus 112 ~~~k-V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 112 GGLR-VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLP 158 (325)
T ss_pred CCce-EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChH
Confidence 3344 55789999999999999999998874 57899999999986664
No 462
>COG4637 Predicted ATPase [General function prediction only]
Probab=94.61 E-value=0.1 Score=49.49 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=52.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
-..|++++||||-++|=|.....+...+++.++.+ -||++||....+..+-.+-.+..++
T Consensus 288 p~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~~v~~~~~ 347 (373)
T COG4637 288 PRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEHSVFWLDR 347 (373)
T ss_pred CCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhccccceEEecc
Confidence 45899999999999999999999999999976666 8999999999999887776666543
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.45 E-value=0.052 Score=50.13 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=35.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-.+|+++++|||.. .+.+++++.+...+.+++.|+|..+ +....+|+..|.
T Consensus 216 r~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~-~~~~~~Rl~~l~ 266 (308)
T TIGR02788 216 RMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS-PEEAFEQLALMV 266 (308)
T ss_pred cCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC-HHHHHHHHHHHh
Confidence 36999999999996 4567777776533446799999998 444244444443
No 464
>KOG0063|consensus
Probab=94.40 E-value=0.036 Score=54.56 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=53.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..+++.+.|||++=||...|......++++ ...++|-+++-|++-.+--++|||++...
T Consensus 473 KpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 473 KPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred CCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 366899999999999999999999988886 56789999999999999999999999874
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.15 E-value=0.07 Score=52.36 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=48.7
Q ss_pred HhhCCCCCEEEEeC--C-CCCCC--HHHHHHHHHHHHHHHhCCcEEEEEcCCHHH---------HHhhcCEEEEEe
Q psy859 21 SWGIGDPPLVFLDE--P-TSGVD--PISRHRLWAVLSQIQKTGQSIVLTSHSMDE---------CEALCNRLTIMR 82 (247)
Q Consensus 21 ~~~~~~P~lLiLDE--P-TsGLD--p~~r~~i~~~l~~l~~~G~TIllsSH~l~e---------~e~l~drV~ii~ 82 (247)
.+.-++++.+++|- . ....| +..++.++++++.+++.|.|+|++||++++ .+.+||.|++|+
T Consensus 115 ~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 115 AIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 33367999999993 2 22333 467888999999998889999999999865 277999999997
No 466
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.73 E-value=0.097 Score=50.92 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCcEEEEEc-CCHHHHHhhcCEEE-EEeCCEEee
Q psy859 25 GDPPLVFLDEPTSGVDPI-SRHRLWAVLSQIQKTGQSIVLTS-HSMDECEALCNRLT-IMRGNELRK 88 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~-~r~~i~~~l~~l~~~G~TIllsS-H~l~e~e~l~drV~-ii~~G~i~~ 88 (247)
.++++|++|||...+|.. .+..++..+..+.+.|+.++++| |...+...+.+++. -+..|.++.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~ 259 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK 259 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEe
Confidence 379999999999888765 45678899988877787777765 88888888777754 355565543
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.72 E-value=0.058 Score=52.95 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=48.7
Q ss_pred hCCCCCEEEEeC---CCCCCCHHH--HHHHHHHHHHHHhCCcEEEEEcCCHH---------HHHhhcCEEEEEe
Q psy859 23 GIGDPPLVFLDE---PTSGVDPIS--RHRLWAVLSQIQKTGQSIVLTSHSMD---------ECEALCNRLTIMR 82 (247)
Q Consensus 23 ~~~~P~lLiLDE---PTsGLDp~~--r~~i~~~l~~l~~~G~TIllsSH~l~---------e~e~l~drV~ii~ 82 (247)
.-.+|+.+++|- |++++|... ++.+++++..+++.|.|+|+++|... ..+.+||.|+.|+
T Consensus 127 ~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 127 DKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred HhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 357899999994 456777666 77888888888888999999999764 2356899999997
No 468
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.55 E-value=0.12 Score=44.76 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCC--CHHH-HHHHHHHHHHHHhCCcEEEEEcCCHH--------HHHhhcCEEEEEe
Q psy859 26 DPPLVFLDEPTSGV--DPIS-RHRLWAVLSQIQKTGQSIVLTSHSMD--------ECEALCNRLTIMR 82 (247)
Q Consensus 26 ~P~lLiLDEPTsGL--Dp~~-r~~i~~~l~~l~~~G~TIllsSH~l~--------e~e~l~drV~ii~ 82 (247)
+++.+++|.++.=+ +|.. +..++.+.+.+++.|.|+++++|... .++.+||.|+.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57788888876532 4443 33445555555677999999999654 4677899999988
No 469
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=92.61 E-value=0.42 Score=47.00 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=74.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHH-------------HHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEeecc
Q psy859 24 IGDPPLVFLDEPTSGVDPISRH-------------RLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRKRR 90 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~-------------~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~~~ 90 (247)
-.....+++||-++......+- .+.+.+.+++..+.|+|.+|-.++..-..+||+++|++.+-.
T Consensus 336 Eagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk--- 412 (554)
T COG3044 336 EAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK--- 412 (554)
T ss_pred HcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc---
Confidence 6789999999999887544332 344455555455689999999999999999999999998875
Q ss_pred ccchhhhhhhhhhhcCCCCCCCChhHHHhHhhheeeeeCCeeeecCChHHH
Q psy859 91 NCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYL 141 (247)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L 141 (247)
|+-++|.|.-|..+ +.+...|...-+=..|+.+++.+..++
T Consensus 413 Dltekr~el~ryyl----------Elarr~~~~~~~re~gr~~~~a~~~~~ 453 (554)
T COG3044 413 DLTEKRRELIRYYL----------ELARRECETPLARETGRALNCATLQKL 453 (554)
T ss_pred chHHHHHHHHHHHH----------HHHHHhhcccccCCCcchhhHHHHHHh
Confidence 78888999888776 333334433333345666666666555
No 470
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=92.34 E-value=0.65 Score=41.47 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=36.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQK-TGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~-~G~TIllsSH~l~e~e~ 73 (247)
..+..++++||...|-+|.....+.. ++..+.+ .+..++++||+.+-++.
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 45677899999999999999888555 5555666 48899999999976554
No 471
>KOG0962|consensus
Probab=91.87 E-value=0.25 Score=53.79 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=41.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---Hh--CCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI---QK--TGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l---~~--~G~TIllsSH~l~e~e~ 73 (247)
..++-+|-|||||+.||......+...+.++ ++ ...=.|++||+-..+..
T Consensus 1205 ~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1205 GSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred hhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence 6899999999999999999988887776664 22 25688899999999886
No 472
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.80 E-value=0.051 Score=53.08 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=47.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-+++-++++|+||.+.|+. ++++..+.+.-..|.+..+.||. .++++|.....+|.|++
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l----~~L~ERag~~~~GSiT~ 302 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM----KKLLERSGKTQKGSITG 302 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc----hhHHHHhccCCCcceEE
Confidence 3899999999999999985 77888777765558999999984 55666666678999875
No 473
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=90.91 E-value=0.6 Score=44.81 Aligned_cols=59 Identities=17% Similarity=0.369 Sum_probs=46.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC---EEEEEeCCEE
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN---RLTIMRGNEL 86 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d---rV~ii~~G~i 86 (247)
.+..|||+||+-++=||+.-|..+.+. . ..+.=+++|+-+.+.+...-. +++...+|+|
T Consensus 300 ~g~~PILLLDDv~seLD~~Rr~~Ll~~-~---~~~~Q~fvT~t~~~~~~~~~~~~~~~f~V~~g~i 361 (363)
T COG1195 300 TGEYPILLLDDVASELDDGRRAALLDT-I---ELGVQVFVTTTDLEDIDDNLDENAQMFHVEDGKI 361 (363)
T ss_pred cCCCCEEEechhhHhhCHHHHHHHHhh-c---ccCCeEEEEccCHHHhhhhhhccceEEEEeccee
Confidence 688999999999999999999998888 2 346667777777777773333 5777788876
No 474
>PRK06893 DNA replication initiation factor; Validated
Probab=90.56 E-value=1.2 Score=39.20 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=33.5
Q ss_pred CCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 24 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL-Dp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
..++++|++||..... |+.....++.++....++|.+++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5578999999998754 66666679999988777777766554443
No 475
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.27 E-value=0.2 Score=45.26 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHhh-----CCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 19 RQSWG-----IGDPPLVFLDEPTSGVDPISRHR-LWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 19 r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~-i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
+|++. ..++++.+| ||+.+|+..-.. +. +..++..+.|.|+.||.+.+.. ..+.|.+|+.|++.
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~ 212 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK 212 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence 66664 469999999 999999654443 33 4555556899999999999877 59999999999874
No 476
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.14 E-value=0.54 Score=46.08 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=44.9
Q ss_pred CCCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHH-HhCCcEEEEEcCCHHH--------HHhhcCEEEEEeCCE
Q psy859 24 IGDPPLVFLDEPTSGV---------DPISRHRLWAVLSQI-QKTGQSIVLTSHSMDE--------CEALCNRLTIMRGNE 85 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL---------Dp~~r~~i~~~l~~l-~~~G~TIllsSH~l~e--------~e~l~drV~ii~~G~ 85 (247)
-.+|+++++|.-++=. ++...+++...|.++ ++.|.|+++++|...+ ++.+||.|+.|+.++
T Consensus 168 ~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 168 EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 4689999999765411 233344555555555 5679999999998765 688999999998654
No 477
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=89.92 E-value=0.73 Score=48.60 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=38.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCcEEEEEcCCHHHHH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQK-TGQSIVLTSHSMDECE 72 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~-~G~TIllsSH~l~e~e 72 (247)
..++.++++||+..|.|+.....+.. ++..+.+ .|..++++||+-+...
T Consensus 669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 56889999999999999888888544 4455555 6889999999976554
No 478
>PRK08181 transposase; Validated
Probab=89.80 E-value=1.8 Score=39.66 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=43.4
Q ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC-CHHHHHh----------hcCEEEEEeCCEEeeccc
Q psy859 24 IGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLTSH-SMDECEA----------LCNRLTIMRGNELRKRRN 91 (247)
Q Consensus 24 ~~~P~lLiLDEP-TsGLDp~~r~~i~~~l~~l~~~G~TIllsSH-~l~e~e~----------l~drV~ii~~G~i~~~~~ 91 (247)
+.++++||+||. ....+......+++++....++ +++|+||+ ..++... +.||+ ++++.++..++
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~~~~~D~~~a~aildRL--~h~~~~i~~~g 241 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPFGEWNRVFPDPAMTLAAVDRL--VHHATIFEMNV 241 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHHHhcCCccchhhHHHhh--hcCceEEecCC
Confidence 678999999999 6667888888999999875444 45555555 4444333 34555 34566654443
No 479
>PF13166 AAA_13: AAA domain
Probab=89.75 E-value=0.75 Score=46.67 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=44.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEcCCHHHHHhhc
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ--KTGQSIVLTSHSMDECEALC 75 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~--~~G~TIllsSH~l~e~e~l~ 75 (247)
....++++|-|-|.||-..+..+...|.++. ...+=||+.||++...-.+.
T Consensus 526 ~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~l~ 578 (712)
T PF13166_consen 526 NKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKELK 578 (712)
T ss_pred CcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHHHH
Confidence 3788999999999999999999999999985 56789999999987665543
No 480
>KOG0728|consensus
Probab=89.50 E-value=0.71 Score=43.09 Aligned_cols=74 Identities=19% Similarity=0.427 Sum_probs=59.1
Q ss_pred CCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEeec
Q psy859 24 IGDPPLVFLDEP----------TSGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHSMDECEALCNRLTIMRGNELRKR 89 (247)
Q Consensus 24 ~~~P~lLiLDEP----------TsGLDp~~r~~i~~~l~~l~----~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~~ 89 (247)
-|-|.++|+||- .+|-|...++.+.+++.++- .+..-||+.|+-++-... ++++-|+|..
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~-----allrpgridr- 311 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDP-----ALLRPGRIDR- 311 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccH-----hhcCCCcccc-
Confidence 589999999976 67889999999999998872 346799999998887666 6788888851
Q ss_pred cccchhhhhhhhhhhcCCCCCCCChhHHHhH
Q psy859 90 RNCLSFRKEKMRLILTFPLCFPSSMDECEAL 120 (247)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (247)
--+||+|.+++-+-
T Consensus 312 -----------------kiefp~p~e~ar~~ 325 (404)
T KOG0728|consen 312 -----------------KIEFPPPNEEARLD 325 (404)
T ss_pred -----------------cccCCCCCHHHHHH
Confidence 23788998877643
No 481
>PRK04296 thymidine kinase; Provisional
Probab=88.90 E-value=1.5 Score=37.59 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=42.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC----------HHHHHhhcCEEEEEeC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS----------MDECEALCNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~----------l~e~e~l~drV~ii~~ 83 (247)
.++++++++||-= -++. ..+.++++.++..|.+|+++.++ ......+||.|.-|+.
T Consensus 76 ~~~~dvviIDEaq-~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 76 GEKIDCVLIDEAQ-FLDK---EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred CCCCCEEEEEccc-cCCH---HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 4688999999982 2332 33667777767889999999998 2467778999999973
No 482
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.29 E-value=0.95 Score=38.47 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=48.9
Q ss_pred HHHhhCCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEEcCCH-HHHHhhcCEEEEEeC
Q psy859 19 RQSWGIGDPPLVFLDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSM-DECEALCNRLTIMRG 83 (247)
Q Consensus 19 r~~~~~~~P~lLiLDEPTsG--LDp~~r~~i~~~l~~l~~~G~TIllsSH~l-~e~e~l~drV~ii~~ 83 (247)
+..+..++.+++||||-... ++......+.++|.. +-++..+|+|.++. ++.-..||-|.-|+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 34444689999999998654 555667778888865 45688999999987 567778999988864
No 483
>PRK13764 ATPase; Provisional
Probab=87.12 E-value=1.3 Score=45.25 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=47.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC---------------CHHHHHhhcCEEEEEeCCEEee
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH---------------SMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH---------------~l~e~e~l~drV~ii~~G~i~~ 88 (247)
..+|+++++||.-.+- -++++..++..|..++-|-| ++..+..+||+|++|++|++..
T Consensus 322 R~rPD~IivGEiRd~E-------t~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~ 394 (602)
T PRK13764 322 LVRPDYTIYDEMRKTE-------DFKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVSK 394 (602)
T ss_pred hhCCCEEEECCCCCHH-------HHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEEE
Confidence 4689999999997532 26666666666888888889 8999999999999999999954
No 484
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.30 E-value=1 Score=38.81 Aligned_cols=51 Identities=20% Similarity=0.286 Sum_probs=36.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
..+|+++++|||. |+.. ++.++ +....|..++.|+|..+.++ ..+|+..+.
T Consensus 72 r~~pd~ii~gEir---d~e~---~~~~l-~~a~~G~~v~~t~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 72 RQDPDVILVGEMR---DLET---IRLAL-TAAETGHLVMSTLHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred cCCcCEEEEcCCC---CHHH---HHHHH-HHHHcCCEEEEEecCCcHHH-HHhHHHhhc
Confidence 3589999999996 5543 33333 33467999999999998765 467766553
No 485
>KOG0064|consensus
Probab=85.92 E-value=0.54 Score=47.65 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=45.8
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHH
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e 72 (247)
+.|.+||++ .|.|+..+|||-|+.+-+..-..+++..++ .|.+.+-+||-..-..
T Consensus 614 sgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk 673 (728)
T KOG0064|consen 614 SGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWK 673 (728)
T ss_pred cchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHH
Confidence 345666666 799999999999999999999999888755 4999999999887544
No 486
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.85 E-value=1.1 Score=43.16 Aligned_cols=58 Identities=22% Similarity=0.501 Sum_probs=43.8
Q ss_pred CCCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 24 IGDPPLVFLDE----------PTSGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 24 ~~~P~lLiLDE----------PTsGLDp~~r~~i~~~l~~l~----~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
...|.++++|| +.+|.|...++.+.+++..+. ..+..||++||..+.+.. ++++.|++
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp-----AllR~GRf 307 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP-----ALLRPGRL 307 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH-----HHcCCCcc
Confidence 46899999999 567788888888888887763 236789999998877654 34555654
No 487
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=84.11 E-value=0.76 Score=45.04 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 36 TSGVDPISRHRLWAVLSQIQKTGQ-------SIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 36 TsGLDp~~r~~i~~~l~~l~~~G~-------TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
+.|.||.....+++++.+....|. ||++.+|++ .+.+||++..+.+|+|+.
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivL 339 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVL 339 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEE
Confidence 569999999999999998865566 899999998 577999999999999984
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=82.93 E-value=2.2 Score=37.81 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=41.7
Q ss_pred CCCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHH-HhCCcEEEEEcCCHH----------------------HHH
Q psy859 24 IGDPPLVFLDEPTSGVDP-------I-SRHRLWAVLSQI-QKTGQSIVLTSHSMD----------------------ECE 72 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp-------~-~r~~i~~~l~~l-~~~G~TIllsSH~l~----------------------e~e 72 (247)
-++|+++++|..+.-.+. . ....+...|+.+ ++.|.||++++|--. .++
T Consensus 138 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~ 217 (271)
T cd01122 138 SHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIG 217 (271)
T ss_pred cCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHh
Confidence 468999999987553332 1 233455556666 456999999998431 578
Q ss_pred hhcCEEEEEeC
Q psy859 73 ALCNRLTIMRG 83 (247)
Q Consensus 73 ~l~drV~ii~~ 83 (247)
..||-|++|..
T Consensus 218 ~~aD~vi~l~r 228 (271)
T cd01122 218 QLADNVIALER 228 (271)
T ss_pred hhccEEEEEEe
Confidence 88999998874
No 489
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.40 E-value=7.7 Score=37.99 Aligned_cols=46 Identities=7% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 24 IGDPPLVFLDEP-TSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 24 ~~~P~lLiLDEP-TsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
..++++|++||. +-..+......++.++..+...|+.||+||+...
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 568999999999 5556788889999999998888889999988654
No 490
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.95 E-value=2.6 Score=42.87 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEcCCHHHHH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSHSMDECE 72 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~-~l~~l~~~G~TIllsSH~l~e~e 72 (247)
...++ |+|||+.-||+..|..+.. ++..+ +.-||+.||+-+.-.
T Consensus 574 ~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e~~~ 618 (650)
T TIGR03185 574 RRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEEVDE 618 (650)
T ss_pred CCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHhhCH
Confidence 34666 5699999999999999875 65543 466777777765433
No 491
>PRK06921 hypothetical protein; Provisional
Probab=81.86 E-value=2.6 Score=38.29 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=35.3
Q ss_pred CCCCCEEEEeCCCC---C---CCHHHHHHHHHHHHHHHhCCcEEEEEcCC-HHHHH
Q psy859 24 IGDPPLVFLDEPTS---G---VDPISRHRLWAVLSQIQKTGQSIVLTSHS-MDECE 72 (247)
Q Consensus 24 ~~~P~lLiLDEPTs---G---LDp~~r~~i~~~l~~l~~~G~TIllsSH~-l~e~e 72 (247)
+.++++||+|+-.. | ++......++.++.....+++.+|+||+. +++..
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELL 230 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHh
Confidence 67899999999733 4 45667778898887765566777777765 45543
No 492
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=81.82 E-value=3.8 Score=39.26 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCCEEEEeCCC----CCCC-----HHHHHHHHHHHHHH-HhCCcEEEEEcCCHHH--------HHhhcCEEEEEeCCE
Q psy859 24 IGDPPLVFLDEPT----SGVD-----PISRHRLWAVLSQI-QKTGQSIVLTSHSMDE--------CEALCNRLTIMRGNE 85 (247)
Q Consensus 24 ~~~P~lLiLDEPT----sGLD-----p~~r~~i~~~l~~l-~~~G~TIllsSH~l~e--------~e~l~drV~ii~~G~ 85 (247)
-.+|+++++|+-. ..+| +...+++...|.++ ++.|.|++++.|.-.+ ++.++|.|+.+..++
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~ 235 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence 4689999999953 2232 23334444545554 5669999999996543 688999999887543
No 493
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=80.08 E-value=3.6 Score=42.20 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=43.7
Q ss_pred CCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGV-DPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL-Dp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
-+.|.++++||.-.-+ +|..+..+.+.++..++.|..++++||+++++..
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~~~ 677 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDALG 677 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhc
Confidence 4688999999988777 5888888999999999999999999999998753
No 494
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=77.51 E-value=1.9 Score=39.27 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=23.7
Q ss_pred hHHHhHhhheeeeeCCeeeecCChHHH
Q psy859 115 DECEALCNRLTIMVRGEMQCLGNITYL 141 (247)
Q Consensus 115 ~~~~~lc~ri~i~~~G~~~~~Gt~~~L 141 (247)
.=+..+||||..|.+|+++|.|+|++.
T Consensus 202 NLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 202 NLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred hHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 335679999999999999999999876
No 495
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=77.28 E-value=3.5 Score=40.39 Aligned_cols=58 Identities=19% Similarity=0.487 Sum_probs=43.7
Q ss_pred CCCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 24 IGDPPLVFLDE----------PTSGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 24 ~~~P~lLiLDE----------PTsGLDp~~r~~i~~~l~~l~----~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-+.|.++|+|| ..+|-+....+.+.+++..+. ..+..||++||..+.+.. ++++.|++
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp-----aLlRpGRf 345 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP-----ALIRPGRI 345 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH-----HhccCCee
Confidence 46899999998 246677777788888887763 347899999999988866 45566665
No 496
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=76.88 E-value=5.5 Score=40.59 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhc-CEEE-EEeCCEEeeccccc--hhhhh-h
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALC-NRLT-IMRGNELRKRRNCL--SFRKE-K 99 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~-drV~-ii~~G~i~~~~~~~--~~~~~-~ 99 (247)
..|.+|+.+||=+-|=|..+..+|+++..+. .+.=+|+|||+.+.+...- +.+. +.+.+.-+....+. .+-.| .
T Consensus 300 ~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~-~~~Q~IvTThS~~~~s~~dl~si~~lvr~~~~v~~~~~~~~~~~~~~~ 378 (581)
T COG3593 300 ARPNILLIEEPEAHLHPQLQAVLWDLLNNLP-LGLQRIVTTHSPHLLSLADLDSICRLVRVSSRVAAFQLGPNNFSKEED 378 (581)
T ss_pred cccceEEEeCchhhcCHHHHHHHHHHHhcCC-cceEEEEEcCCcccccccCcccEEEEEEcccceeeeccCccccccccc
Confidence 3445999999999999999999999998875 6799999999998877422 2333 44554332222221 12222 3
Q ss_pred hhhhhcCCCCCCCChhHHHhHhhheeeeeCCe
Q psy859 100 MRLILTFPLCFPSSMDECEALCNRLTIMVRGE 131 (247)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~lc~ri~i~~~G~ 131 (247)
+|-+. |-=+..+|+.+--|-+|++-|.
T Consensus 379 ~r~i~-----r~l~~trs~~lFAr~vIlVEG~ 405 (581)
T COG3593 379 KRRIK-----RHLDATRSSLLFARGVILVEGE 405 (581)
T ss_pred hhhhh-----hhcccccchhhhhceeEEEecc
Confidence 33332 2234455666776777777554
No 497
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=75.93 E-value=6.6 Score=34.14 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=49.5
Q ss_pred HHHhhCCCCCEEEEeCCCCCCC--HHHHHHHHHHHHHHHhCCcEEEEEcCCH-HHHHhhcCEEEEEeCCE
Q psy859 19 RQSWGIGDPPLVFLDEPTSGVD--PISRHRLWAVLSQIQKTGQSIVLTSHSM-DECEALCNRLTIMRGNE 85 (247)
Q Consensus 19 r~~~~~~~P~lLiLDEPTsGLD--p~~r~~i~~~l~~l~~~G~TIllsSH~l-~e~e~l~drV~ii~~G~ 85 (247)
|..+.-++.+++||||-...++ -.....+.++|.. +-.+..||+|-++. ++.-.+||-|.-|+.++
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~-rp~~~evILTGR~~p~~Lie~AD~VTEm~~~~ 176 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMPESLLAIADQITELRRSH 176 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh-CCCCCEEEEECCCCCHHHHHhCCeeeeeeccc
Confidence 4444468899999999866543 3455667777765 45688999999987 66778899999998653
No 498
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=75.17 E-value=2.3 Score=39.01 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=25.8
Q ss_pred ChhHHHhHhhheeeeeCCeeeecCChHHH
Q psy859 113 SMDECEALCNRLTIMVRGEMQCLGNITYL 141 (247)
Q Consensus 113 ~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L 141 (247)
+.+-+..+||++++|.+|++++.|+|++.
T Consensus 198 DlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 198 DLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred CHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 46678889999999999999999998766
No 499
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.65 E-value=9.4 Score=28.72 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=34.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEcCCHH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-----TGQSIVLTSHSMD 69 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-----~G~TIllsSH~l~ 69 (247)
..++.++++||.-.. ++.....+.+.+..... .+.+++++|+...
T Consensus 82 ~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 678999999998765 66677778888877642 5788888888765
No 500
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.55 E-value=4.2 Score=44.30 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=45.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCE
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~dr 77 (247)
....|+.+|||-=++||......+.++|+++. .+.=.|++||.-...+. ||+
T Consensus 1086 ~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~~m~~-ad~ 1137 (1163)
T COG1196 1086 YRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKGTMEA-ADR 1137 (1163)
T ss_pred hCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChHHHHH-HHH
Confidence 56889999999999999999999999999985 67889999998876664 666
Done!