Query psy859
Match_columns 247
No_of_seqs 184 out of 2165
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:40:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b0u_A Histidine permease; ABC 99.8 2.6E-18 8.8E-23 152.8 11.6 75 13-87 153-232 (262)
2 2olj_A Amino acid ABC transpor 99.8 4E-18 1.4E-22 152.2 12.5 76 12-87 158-238 (263)
3 1vpl_A ABC transporter, ATP-bi 99.8 3.6E-18 1.2E-22 151.8 11.9 75 13-87 146-225 (256)
4 3gfo_A Cobalt import ATP-bindi 99.8 1.5E-18 5.1E-23 156.0 9.4 78 11-88 141-224 (275)
5 1ji0_A ABC transporter; ATP bi 99.8 4.1E-18 1.4E-22 149.4 11.2 76 13-88 139-219 (240)
6 2onk_A Molybdate/tungstate ABC 99.7 4.5E-18 1.5E-22 149.8 9.8 77 11-87 124-206 (240)
7 3tui_C Methionine import ATP-b 99.7 8.3E-18 2.8E-22 157.4 11.5 82 13-94 163-250 (366)
8 1g6h_A High-affinity branched- 99.7 4.8E-18 1.6E-22 150.4 9.4 83 12-94 152-239 (257)
9 3tif_A Uncharacterized ABC tra 99.7 9.1E-18 3.1E-22 146.9 10.7 80 11-91 143-228 (235)
10 4g1u_C Hemin import ATP-bindin 99.7 9.6E-18 3.3E-22 149.7 10.9 78 10-87 138-227 (266)
11 2yz2_A Putative ABC transporte 99.7 1.1E-17 3.8E-22 148.9 10.3 76 12-87 137-217 (266)
12 2pcj_A ABC transporter, lipopr 99.7 2.1E-17 7.3E-22 143.5 11.2 77 11-88 138-219 (224)
13 3fvq_A Fe(3+) IONS import ATP- 99.7 2.9E-17 1E-21 153.2 12.4 83 12-94 137-225 (359)
14 2zu0_C Probable ATP-dependent 99.7 1.6E-17 5.6E-22 148.0 8.6 75 14-88 165-245 (267)
15 1z47_A CYSA, putative ABC-tran 99.7 5.3E-17 1.8E-21 151.2 11.7 83 12-94 144-232 (355)
16 3rlf_A Maltose/maltodextrin im 99.7 3.5E-17 1.2E-21 153.9 10.5 83 12-94 132-220 (381)
17 2nq2_C Hypothetical ABC transp 99.7 4.2E-17 1.4E-21 144.5 10.2 78 11-89 126-209 (253)
18 2yyz_A Sugar ABC transporter, 99.7 5.8E-17 2E-21 151.0 11.6 83 12-94 132-220 (359)
19 2qi9_C Vitamin B12 import ATP- 99.7 4.1E-17 1.4E-21 144.5 9.6 77 12-88 125-213 (249)
20 1oxx_K GLCV, glucose, ABC tran 99.7 4.7E-17 1.6E-21 151.1 10.3 83 12-94 139-227 (353)
21 2ixe_A Antigen peptide transpo 99.7 9.7E-17 3.3E-21 143.4 11.6 74 13-87 156-235 (271)
22 3d31_A Sulfate/molybdate ABC t 99.7 5.6E-17 1.9E-21 150.5 10.3 82 11-92 125-212 (348)
23 1g29_1 MALK, maltose transport 99.7 7.2E-17 2.5E-21 150.9 11.2 83 12-94 138-226 (372)
24 2ihy_A ABC transporter, ATP-bi 99.7 2E-17 6.9E-22 148.7 6.9 80 13-92 161-247 (279)
25 2it1_A 362AA long hypothetical 99.7 6.1E-17 2.1E-21 151.0 10.3 84 11-94 131-220 (362)
26 2ff7_A Alpha-hemolysin translo 99.7 8.5E-17 2.9E-21 141.9 10.6 73 13-87 145-222 (247)
27 2d2e_A SUFC protein; ABC-ATPas 99.7 3.4E-17 1.1E-21 144.4 7.1 75 14-88 144-224 (250)
28 1v43_A Sugar-binding transport 99.7 9.4E-17 3.2E-21 150.3 10.1 82 13-94 141-228 (372)
29 2ghi_A Transport protein; mult 99.7 1.7E-16 5.7E-21 140.9 9.7 73 13-87 155-232 (260)
30 1mv5_A LMRA, multidrug resista 99.7 8.7E-17 3E-21 141.0 7.8 73 13-87 139-216 (243)
31 3nh6_A ATP-binding cassette SU 99.7 4.3E-16 1.5E-20 142.2 11.4 73 13-87 190-267 (306)
32 2pjz_A Hypothetical protein ST 99.6 2.5E-16 8.4E-21 140.6 8.3 73 12-87 127-205 (263)
33 2pze_A Cystic fibrosis transme 99.6 5.4E-16 1.9E-20 135.0 8.4 74 12-87 129-208 (229)
34 2cbz_A Multidrug resistance-as 99.6 4.8E-16 1.6E-20 136.1 7.5 73 13-87 127-207 (237)
35 3ux8_A Excinuclease ABC, A sub 99.6 3.1E-15 1.1E-19 148.0 9.4 81 11-92 200-293 (670)
36 2bbs_A Cystic fibrosis transme 99.6 3.3E-15 1.1E-19 135.1 8.8 74 13-88 159-238 (290)
37 3b5x_A Lipid A export ATP-bind 99.6 7.3E-15 2.5E-19 143.2 11.2 73 13-87 480-557 (582)
38 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 6.8E-15 2.3E-19 121.1 9.1 73 13-86 57-142 (148)
39 3qf4_B Uncharacterized ABC tra 99.6 8.7E-15 3E-19 143.4 11.1 72 14-87 492-568 (598)
40 3j16_B RLI1P; ribosome recycli 99.6 5.4E-15 1.8E-19 146.1 9.5 71 13-83 467-543 (608)
41 3b60_A Lipid A export ATP-bind 99.6 7.3E-15 2.5E-19 143.2 10.1 73 13-87 480-557 (582)
42 3qf4_A ABC transporter, ATP-bi 99.6 1.1E-14 3.7E-19 142.6 11.1 73 13-87 479-556 (587)
43 1yqt_A RNAse L inhibitor; ATP- 99.6 8.8E-15 3E-19 142.3 9.8 72 12-83 400-477 (538)
44 2yl4_A ATP-binding cassette SU 99.5 8.5E-15 2.9E-19 143.1 9.7 73 13-87 483-560 (595)
45 4a82_A Cystic fibrosis transme 99.5 9.5E-15 3.3E-19 142.5 9.9 73 13-87 477-554 (578)
46 3ux8_A Excinuclease ABC, A sub 99.5 1.3E-14 4.3E-19 143.6 10.9 70 12-82 542-619 (670)
47 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1E-14 3.4E-19 135.1 9.4 74 13-87 279-363 (365)
48 3gd7_A Fusion complex of cysti 99.5 5.2E-15 1.8E-19 139.2 6.0 79 14-94 156-239 (390)
49 3bk7_A ABC transporter ATP-bin 99.5 2.2E-14 7.6E-19 141.5 10.6 73 11-83 469-547 (607)
50 3ozx_A RNAse L inhibitor; ATP 99.5 1.5E-14 5.2E-19 140.8 8.9 74 11-84 383-462 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.5 2.7E-14 9.3E-19 138.8 9.6 73 12-84 157-234 (538)
52 1sgw_A Putative ABC transporte 99.5 1.7E-15 5.7E-20 131.5 0.2 75 11-86 131-210 (214)
53 3bk7_A ABC transporter ATP-bin 99.5 6.1E-14 2.1E-18 138.4 10.5 72 13-84 228-304 (607)
54 3j16_B RLI1P; ribosome recycli 99.5 6.9E-14 2.4E-18 138.2 9.9 75 12-86 220-299 (608)
55 3pih_A Uvrabc system protein A 99.5 9.2E-14 3.2E-18 142.9 10.8 69 13-82 805-881 (916)
56 3ozx_A RNAse L inhibitor; ATP 99.5 8.7E-14 3E-18 135.5 9.1 74 11-85 136-214 (538)
57 2vf7_A UVRA2, excinuclease ABC 99.5 1.7E-13 5.7E-18 139.9 10.7 70 12-82 729-806 (842)
58 2iw3_A Elongation factor 3A; a 99.4 3.4E-13 1.2E-17 139.5 12.4 73 13-88 548-625 (986)
59 2r6f_A Excinuclease ABC subuni 99.4 2.7E-13 9.1E-18 139.9 10.8 70 12-82 844-921 (972)
60 2ygr_A Uvrabc system protein A 99.4 4.8E-13 1.6E-17 138.3 11.6 69 13-82 863-939 (993)
61 3g5u_A MCG1178, multidrug resi 99.4 1.8E-13 6.2E-18 144.6 7.7 72 14-87 1172-1248(1284)
62 3pih_A Uvrabc system protein A 99.4 7.1E-13 2.4E-17 136.4 9.8 83 11-94 462-557 (916)
63 4aby_A DNA repair protein RECN 99.4 8.7E-13 3E-17 121.7 9.3 73 14-88 296-379 (415)
64 2ygr_A Uvrabc system protein A 99.4 2E-12 6.8E-17 133.7 11.0 87 10-97 518-617 (993)
65 3g5u_A MCG1178, multidrug resi 99.3 1.3E-12 4.6E-17 138.0 8.9 74 14-89 527-605 (1284)
66 2iw3_A Elongation factor 3A; a 99.3 6.8E-13 2.3E-17 137.3 6.5 72 13-87 901-977 (986)
67 2r6f_A Excinuclease ABC subuni 99.3 3.4E-12 1.2E-16 131.7 9.7 88 9-97 500-600 (972)
68 3qkt_A DNA double-strand break 99.3 5.2E-12 1.8E-16 115.1 9.0 70 12-82 247-327 (339)
69 4f4c_A Multidrug resistance pr 99.3 1.7E-12 5.8E-17 137.6 6.4 71 15-87 1219-1294(1321)
70 4f4c_A Multidrug resistance pr 99.3 4.9E-12 1.7E-16 134.1 8.6 73 14-88 555-632 (1321)
71 2vf7_A UVRA2, excinuclease ABC 99.3 9E-12 3.1E-16 127.2 9.7 87 11-98 377-476 (842)
72 4ad8_A DNA repair protein RECN 99.2 7.8E-12 2.7E-16 120.1 7.5 69 15-85 399-474 (517)
73 1e69_A Chromosome segregation 99.2 4.8E-11 1.7E-15 107.9 8.8 74 12-87 218-302 (322)
74 2o5v_A DNA replication and rep 99.1 8.3E-11 2.9E-15 109.4 7.0 69 13-88 265-347 (359)
75 4gp7_A Metallophosphoesterase; 99.1 1E-11 3.4E-16 102.4 0.6 59 15-73 85-164 (171)
76 3kta_B Chromosome segregation 99.1 8.8E-10 3E-14 92.7 10.9 72 12-85 63-145 (173)
77 3auy_A DNA double-strand break 99.0 4.6E-10 1.6E-14 103.4 7.9 69 13-83 280-360 (371)
78 2ehv_A Hypothetical protein PH 98.9 2.3E-10 7.7E-15 97.0 2.8 61 23-83 132-207 (251)
79 1w1w_A Structural maintenance 98.9 2.6E-09 8.9E-14 100.0 10.2 71 12-83 332-411 (430)
80 2npi_A Protein CLP1; CLP1-PCF1 98.8 9.9E-10 3.4E-14 105.1 2.4 72 12-87 234-329 (460)
81 1ye8_A Protein THEP1, hypothet 98.8 7.1E-09 2.4E-13 86.7 7.2 61 14-77 77-152 (178)
82 1znw_A Guanylate kinase, GMP k 98.8 1.3E-10 4.5E-15 98.0 -4.8 59 24-82 139-202 (207)
83 1tf7_A KAIC; homohexamer, hexa 98.7 2.4E-09 8.1E-14 103.0 2.6 72 14-86 354-445 (525)
84 3thx_A DNA mismatch repair pro 98.7 1.4E-08 4.9E-13 104.7 6.8 63 24-87 739-803 (934)
85 3b85_A Phosphate starvation-in 98.7 1.4E-09 4.7E-14 93.5 -0.9 60 17-86 108-172 (208)
86 2w0m_A SSO2452; RECA, SSPF, un 98.7 2.1E-08 7.1E-13 83.5 5.4 62 24-85 119-193 (235)
87 1cr0_A DNA primase/helicase; R 98.6 2.9E-08 9.8E-13 87.6 6.3 64 23-86 144-237 (296)
88 1tf7_A KAIC; homohexamer, hexa 98.6 2.4E-08 8E-13 96.1 4.5 60 24-83 136-209 (525)
89 2o8b_B DNA mismatch repair pro 98.5 1.8E-07 6E-12 97.4 8.9 63 24-87 866-930 (1022)
90 4a74_A DNA repair and recombin 98.4 6E-08 2E-12 81.0 1.6 62 24-85 123-201 (231)
91 1tq4_A IIGP1, interferon-induc 98.3 6.7E-09 2.3E-13 98.3 -6.7 60 26-85 184-255 (413)
92 3thx_B DNA mismatch repair pro 98.3 1E-06 3.5E-11 90.8 8.0 63 15-78 737-805 (918)
93 1wb9_A DNA mismatch repair pro 98.2 3.6E-07 1.2E-11 92.9 2.2 63 24-87 684-748 (800)
94 3ec2_A DNA replication protein 98.1 1.3E-06 4.4E-11 71.2 3.7 48 24-71 98-146 (180)
95 2cvh_A DNA repair and recombin 98.1 2.9E-06 9.9E-11 70.3 5.7 59 26-84 105-185 (220)
96 1n0w_A DNA repair protein RAD5 98.1 2.9E-06 9.8E-11 71.4 4.9 61 24-84 117-209 (243)
97 2pt7_A CAG-ALFA; ATPase, prote 98.0 2.7E-06 9.4E-11 77.6 3.7 52 24-83 238-289 (330)
98 2obl_A ESCN; ATPase, hydrolase 98.0 1.2E-06 4E-11 80.9 0.4 64 16-87 174-245 (347)
99 1nlf_A Regulatory protein REPA 97.8 1.4E-05 4.7E-10 70.0 3.6 50 24-73 131-186 (279)
100 1ewq_A DNA mismatch repair pro 97.6 4.3E-05 1.5E-09 77.3 5.0 48 24-75 653-704 (765)
101 3b9q_A Chloroplast SRP recepto 97.5 7.7E-05 2.6E-09 67.3 5.3 56 24-86 217-284 (302)
102 2eyu_A Twitching motility prot 97.5 2.6E-05 8.7E-10 68.9 2.0 50 25-82 97-146 (261)
103 1pzn_A RAD51, DNA repair and r 97.5 3.5E-05 1.2E-09 70.6 2.7 63 25-87 230-305 (349)
104 3jvv_A Twitching mobility prot 97.5 2.4E-05 8.4E-10 72.3 1.5 53 24-84 194-246 (356)
105 2dpy_A FLII, flagellum-specifi 97.4 2.1E-05 7E-10 74.7 0.1 61 18-86 264-333 (438)
106 2og2_A Putative signal recogni 97.3 0.00019 6.4E-09 66.6 4.6 56 24-86 274-341 (359)
107 2kjq_A DNAA-related protein; s 97.2 0.00022 7.7E-09 57.4 4.2 42 25-67 82-124 (149)
108 3szr_A Interferon-induced GTP- 97.2 0.00027 9.1E-09 69.4 5.0 65 24-88 144-228 (608)
109 2dr3_A UPF0273 protein PH0284; 97.1 0.00076 2.6E-08 56.3 6.2 60 24-83 126-196 (247)
110 2bdt_A BH3686; alpha-beta prot 97.0 6.6E-05 2.3E-09 61.3 -1.0 47 37-86 126-173 (189)
111 2v9p_A Replication protein E1; 96.8 2E-05 6.9E-10 71.7 -6.2 30 14-48 201-233 (305)
112 1s96_A Guanylate kinase, GMP k 96.7 0.0021 7.2E-08 55.1 6.1 41 24-73 105-145 (219)
113 1sxj_E Activator 1 40 kDa subu 96.7 0.0013 4.6E-08 58.3 4.9 57 24-82 132-189 (354)
114 3lda_A DNA repair protein RAD5 96.5 0.0017 6E-08 60.8 4.3 62 24-85 271-364 (400)
115 1lw7_A Transcriptional regulat 96.4 0.00024 8.1E-09 64.8 -2.0 56 25-81 276-341 (365)
116 1ni3_A YCHF GTPase, YCHF GTP-b 96.4 2.4E-05 8.3E-10 73.4 -9.2 61 26-88 139-204 (392)
117 2i3b_A HCR-ntpase, human cance 96.4 0.0025 8.6E-08 53.5 4.1 56 24-87 103-166 (189)
118 2qnr_A Septin-2, protein NEDD5 95.9 0.004 1.4E-07 55.6 3.0 47 17-69 117-168 (301)
119 1z6g_A Guanylate kinase; struc 95.9 0.00025 8.4E-09 60.2 -4.7 66 15-80 124-206 (218)
120 3sop_A Neuronal-specific septi 95.8 0.0045 1.5E-07 54.7 3.0 52 15-71 100-153 (270)
121 2zr9_A Protein RECA, recombina 95.4 0.022 7.7E-07 52.0 6.3 64 24-87 137-233 (349)
122 2ewv_A Twitching motility prot 95.3 0.011 3.8E-07 54.4 3.8 50 25-82 208-257 (372)
123 2r6a_A DNAB helicase, replicat 94.9 0.037 1.3E-06 51.9 6.3 63 24-86 311-401 (454)
124 2px0_A Flagellar biosynthesis 94.7 0.0073 2.5E-07 54.0 0.8 62 24-87 180-245 (296)
125 2bbw_A Adenylate kinase 4, AK4 94.4 0.0018 6.2E-08 55.2 -3.7 35 24-58 162-200 (246)
126 3asz_A Uridine kinase; cytidin 94.0 0.00053 1.8E-08 56.7 -7.7 46 24-69 109-162 (211)
127 1pui_A ENGB, probable GTP-bind 93.2 0.018 6E-07 46.8 0.3 37 24-60 166-202 (210)
128 2xau_A PRE-mRNA-splicing facto 93.0 0.072 2.5E-06 53.7 4.4 68 14-81 191-265 (773)
129 2jeo_A Uridine-cytidine kinase 92.0 0.034 1.2E-06 47.4 0.5 52 17-78 120-176 (245)
130 2qag_C Septin-7; cell cycle, c 89.9 0.29 9.9E-06 45.9 4.8 42 24-70 134-179 (418)
131 3aez_A Pantothenate kinase; tr 88.9 0.069 2.4E-06 48.0 -0.3 30 12-41 175-209 (312)
132 2z4s_A Chromosomal replication 88.9 0.38 1.3E-05 44.9 4.7 42 26-67 194-236 (440)
133 1fnn_A CDC6P, cell division co 88.4 0.2 6.8E-06 44.2 2.3 51 24-75 123-176 (389)
134 1nij_A Hypothetical protein YJ 88.0 0.17 5.8E-06 45.1 1.6 55 15-76 143-197 (318)
135 2ce7_A Cell division protein F 82.3 0.94 3.2E-05 43.2 3.8 49 24-72 106-168 (476)
136 2ius_A DNA translocase FTSK; n 78.8 0.69 2.3E-05 44.7 1.6 56 25-81 295-362 (512)
137 1odf_A YGR205W, hypothetical 3 78.7 0.43 1.5E-05 42.3 0.2 27 15-42 136-168 (290)
138 1rj9_A FTSY, signal recognitio 78.6 0.52 1.8E-05 42.1 0.6 40 24-68 218-258 (304)
139 2r8r_A Sensor protein; KDPD, P 76.6 3.1 0.00011 36.1 5.0 42 25-66 83-125 (228)
140 1ls1_A Signal recognition part 76.0 3.8 0.00013 36.1 5.5 30 25-54 179-209 (295)
141 2oap_1 GSPE-2, type II secreti 75.9 0.03 1E-06 54.0 -8.9 42 34-76 415-458 (511)
142 2b8t_A Thymidine kinase; deoxy 74.8 5.9 0.0002 33.8 6.3 53 25-82 88-150 (223)
143 1l8q_A Chromosomal replication 74.5 4.8 0.00016 35.0 5.8 42 25-66 97-139 (324)
144 1g5t_A COB(I)alamin adenosyltr 74.2 1.8 6.2E-05 36.7 2.8 60 23-83 117-179 (196)
145 2e87_A Hypothetical protein PH 69.9 6.6 0.00023 35.1 5.7 47 24-71 246-295 (357)
146 4dgh_A Sulfate permease family 69.6 23 0.00078 26.6 8.0 48 25-72 47-95 (130)
147 4ag6_A VIRB4 ATPase, type IV s 67.8 4.4 0.00015 36.5 4.1 49 24-72 260-311 (392)
148 1g6h_A High-affinity branched- 66.9 1.9 6.3E-05 37.2 1.3 28 113-140 212-239 (257)
149 1sxj_D Activator 1 41 kDa subu 66.7 2.8 9.4E-05 36.4 2.4 55 25-81 132-187 (353)
150 2gza_A Type IV secretion syste 66.0 0.89 3.1E-05 41.3 -1.0 54 24-85 250-303 (361)
151 2qby_A CDC6 homolog 1, cell di 65.6 0.73 2.5E-05 40.2 -1.6 49 25-73 127-178 (386)
152 1jcn_A Inosine monophosphate d 64.9 0.2 6.9E-06 47.7 -5.8 58 24-87 31-91 (514)
153 2qag_B Septin-6, protein NEDD5 64.7 3.1 0.00011 39.2 2.5 44 24-67 174-218 (427)
154 2ihy_A ABC transporter, ATP-bi 64.5 2 6.8E-05 37.8 1.0 29 113-141 222-250 (279)
155 1u94_A RECA protein, recombina 64.4 16 0.00056 33.1 7.2 63 24-86 139-234 (356)
156 1udx_A The GTP-binding protein 63.8 1.9 6.5E-05 40.3 0.8 58 14-76 253-317 (416)
157 3llo_A Prestin; STAS domain, c 59.9 43 0.0015 25.3 8.0 45 26-70 63-108 (143)
158 4dgf_A Sulfate transporter sul 58.5 32 0.0011 26.0 7.0 47 25-71 50-97 (135)
159 3e70_C DPA, signal recognition 57.9 19 0.00066 32.2 6.4 60 21-87 238-307 (328)
160 2w58_A DNAI, primosome compone 57.4 7.3 0.00025 31.1 3.2 49 25-73 114-165 (202)
161 1njg_A DNA polymerase III subu 57.3 9.1 0.00031 30.1 3.7 43 25-69 125-167 (250)
162 3bos_A Putative DNA replicatio 57.3 5.6 0.00019 31.9 2.5 44 24-67 102-147 (242)
163 3oiz_A Antisigma-factor antago 57.0 12 0.00041 27.2 4.1 43 24-66 41-84 (99)
164 2z43_A DNA repair and recombin 55.4 6.1 0.00021 34.9 2.6 47 25-71 202-261 (324)
165 1jjv_A Dephospho-COA kinase; P 53.7 7.4 0.00025 31.2 2.6 45 37-83 86-132 (206)
166 2nq2_C Hypothetical ABC transp 53.3 6.3 0.00022 33.9 2.3 28 113-141 188-215 (253)
167 2qgz_A Helicase loader, putati 53.2 5.1 0.00018 35.3 1.7 49 25-73 213-264 (308)
168 3ny7_A YCHM protein, sulfate t 52.2 31 0.0011 25.7 5.8 46 24-70 43-89 (118)
169 2orv_A Thymidine kinase; TP4A 51.6 23 0.00078 30.7 5.6 52 25-82 89-150 (234)
170 1v5w_A DMC1, meiotic recombina 50.2 9 0.00031 34.2 2.8 49 25-73 218-279 (343)
171 3tif_A Uncharacterized ABC tra 48.7 5 0.00017 34.0 0.9 28 114-142 206-233 (235)
172 2q6t_A DNAB replication FORK h 48.1 16 0.00055 33.6 4.3 60 24-83 308-397 (444)
173 1xx6_A Thymidine kinase; NESG, 46.2 32 0.0011 28.2 5.5 52 26-82 81-142 (191)
174 1xp8_A RECA protein, recombina 45.9 48 0.0016 30.1 7.1 62 24-85 150-244 (366)
175 2d2e_A SUFC protein; ABC-ATPas 45.4 9.9 0.00034 32.4 2.2 28 113-140 202-230 (250)
176 3euj_A Chromosome partition pr 41.8 18 0.00063 34.4 3.7 51 26-82 414-464 (483)
177 2dy1_A Elongation factor G; tr 41.7 24 0.00083 34.5 4.6 47 19-70 92-138 (665)
178 3kl4_A SRP54, signal recogniti 39.8 24 0.00082 33.1 4.1 48 24-71 177-227 (433)
179 2ka5_A Putative anti-sigma fac 39.3 66 0.0023 23.9 5.9 45 25-69 50-95 (125)
180 2pcj_A ABC transporter, lipopr 39.1 10 0.00035 31.7 1.3 24 113-137 199-222 (224)
181 2j9r_A Thymidine kinase; TK1, 38.9 48 0.0016 28.2 5.5 52 26-82 101-162 (214)
182 2kln_A Probable sulphate-trans 38.7 20 0.00068 27.0 2.8 44 26-69 47-91 (130)
183 1lvg_A Guanylate kinase, GMP k 38.4 1.6 5.6E-05 35.7 -3.7 46 29-82 127-172 (198)
184 1q57_A DNA primase/helicase; d 37.5 90 0.0031 28.9 7.7 61 23-83 351-441 (503)
185 3bh0_A DNAB-like replicative h 36.1 79 0.0027 27.5 6.7 60 24-83 177-265 (315)
186 1sbo_A Putative anti-sigma fac 36.0 1.1E+02 0.0037 21.3 7.6 44 26-69 43-87 (110)
187 2vo9_A EAD500, L-alanyl-D-glut 35.1 37 0.0013 27.9 4.1 38 36-73 30-67 (179)
188 2dpm_A M.dpnii 1, protein (ade 34.4 75 0.0026 27.7 6.3 51 26-76 187-251 (284)
189 3b9p_A CG5977-PA, isoform A; A 32.4 75 0.0026 26.6 5.8 46 24-69 111-170 (297)
190 3hr8_A Protein RECA; alpha and 32.3 2.1E+02 0.007 25.8 9.0 60 24-83 137-229 (356)
191 2chg_A Replication factor C sm 31.7 36 0.0012 26.3 3.4 42 25-68 101-142 (226)
192 2i1q_A DNA repair and recombin 30.0 28 0.00094 30.2 2.6 59 25-83 203-290 (322)
193 1th8_B Anti-sigma F factor ant 29.8 71 0.0024 22.7 4.5 44 26-69 42-86 (116)
194 2g1p_A DNA adenine methylase; 29.3 82 0.0028 27.3 5.6 51 26-76 174-238 (278)
195 3co5_A Putative two-component 29.0 1.1E+02 0.0037 23.0 5.7 42 24-66 73-114 (143)
196 1xp2_A EAD500, PLY500, L-alany 28.6 55 0.0019 27.3 4.1 37 37-73 31-67 (179)
197 3a10_A Response regulator; pho 28.6 1.3E+02 0.0045 20.4 5.8 41 24-67 43-83 (116)
198 3fvq_A Fe(3+) IONS import ATP- 27.8 24 0.00083 32.2 1.9 33 112-144 197-229 (359)
199 3rlf_A Maltose/maltodextrin im 26.1 27 0.00092 32.2 1.9 33 112-144 192-224 (381)
200 3t6o_A Sulfate transporter/ant 26.0 1.3E+02 0.0043 22.0 5.4 45 25-69 46-92 (121)
201 2orw_A Thymidine kinase; TMTK, 25.4 50 0.0017 26.5 3.2 53 25-82 75-137 (184)
202 2f9l_A RAB11B, member RAS onco 25.2 33 0.0011 27.0 2.1 28 25-54 138-165 (199)
203 1x52_A Pelota homolog, CGI-17; 24.5 87 0.003 24.1 4.3 51 24-74 52-103 (124)
204 3bt7_A TRNA (uracil-5-)-methyl 24.2 92 0.0031 27.7 5.1 40 26-73 295-334 (369)
205 2zts_A Putative uncharacterize 23.5 55 0.0019 26.3 3.2 63 21-83 130-207 (251)
206 3llm_A ATP-dependent RNA helic 23.2 96 0.0033 25.3 4.7 41 24-64 174-215 (235)
207 3cu5_A Two component transcrip 22.7 1.6E+02 0.0056 21.2 5.5 40 24-67 47-87 (141)
208 3n70_A Transport activator; si 22.6 90 0.0031 23.5 4.1 46 25-71 75-120 (145)
209 3f6c_A Positive transcription 22.6 1.7E+02 0.0058 20.5 5.5 40 25-68 45-85 (134)
210 3q6v_A Beta-lactamase; metallo 22.6 1.2E+02 0.0042 24.0 5.2 43 25-70 33-76 (233)
211 1dbw_A Transcriptional regulat 21.6 1.8E+02 0.0062 20.2 5.4 42 24-68 45-86 (126)
212 2pl1_A Transcriptional regulat 21.6 2E+02 0.0068 19.6 5.6 42 24-68 42-83 (121)
213 1h4x_A SPOIIAA, anti-sigma F f 21.6 1.2E+02 0.0042 21.5 4.5 45 25-69 40-85 (117)
214 1mvo_A PHOP response regulator 21.5 2E+02 0.0067 20.2 5.6 41 24-67 45-85 (136)
215 3h4m_A Proteasome-activating n 21.4 48 0.0016 27.6 2.4 47 24-70 108-168 (285)
216 1tue_A Replication protein E1; 21.2 1E+02 0.0035 26.2 4.5 54 25-82 102-175 (212)
217 2jk1_A HUPR, hydrogenase trans 21.0 1.5E+02 0.0053 21.1 5.0 41 24-67 42-82 (139)
218 1jr3_A DNA polymerase III subu 20.9 75 0.0026 27.3 3.7 44 24-69 117-160 (373)
219 3jte_A Response regulator rece 20.9 2.3E+02 0.0077 20.1 5.9 43 24-69 47-89 (143)
220 1srr_A SPO0F, sporulation resp 20.8 2.1E+02 0.0073 19.6 6.0 39 25-67 46-85 (124)
221 1tmy_A CHEY protein, TMY; chem 20.2 1.8E+02 0.0061 19.9 5.1 41 25-68 46-86 (120)
222 2rdm_A Response regulator rece 20.2 2.2E+02 0.0077 19.7 6.0 40 26-68 50-90 (132)
223 4g1u_C Hemin import ATP-bindin 20.0 43 0.0015 28.7 1.9 30 112-141 206-235 (266)
No 1
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.76 E-value=2.6e-18 Score=152.83 Aligned_cols=75 Identities=20% Similarity=0.371 Sum_probs=70.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+||||.++..++++|++++++|+|||++||+++++..+||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 56889999998 7999999999999999999999999999999777999999999999999999999999988775
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.76 E-value=4e-18 Score=152.18 Aligned_cols=76 Identities=25% Similarity=0.387 Sum_probs=70.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+||||.++..++++|++++++|+|||++||++++++.+||+|++|++|++
T Consensus 158 ~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 158 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237 (263)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 356889999998 899999999999999999999999999999977799999999999999999999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 238 ~ 238 (263)
T 2olj_A 238 I 238 (263)
T ss_dssp E
T ss_pred E
Confidence 5
No 3
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=3.6e-18 Score=151.84 Aligned_cols=75 Identities=29% Similarity=0.499 Sum_probs=70.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..|.|||||+. +.+|++|||||||+||||.++..++++|++++++|+|||++||++++++.+||++++|++|+++
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 46889999998 8999999999999999999999999999999777999999999999999999999999988775
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.75 E-value=1.5e-18 Score=156.00 Aligned_cols=78 Identities=23% Similarity=0.515 Sum_probs=70.8
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||++ +.+|++|||||||+||||.++..++++|++++ ++|+|||++||+++++..+||||++|++|
T Consensus 141 ~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 141 THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220 (275)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETT
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 3456889999998 89999999999999999999999999999996 56999999999999999999999999988
Q ss_pred EEee
Q psy859 85 ELRK 88 (247)
Q Consensus 85 ~i~~ 88 (247)
++++
T Consensus 221 ~i~~ 224 (275)
T 3gfo_A 221 RVIL 224 (275)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
No 5
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.75 E-value=4.1e-18 Score=149.42 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=70.8
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+||||.++..+++.|++++++|+|||++||+++++..+||++++|++|+++
T Consensus 139 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 46789999998 7999999999999999999999999999999778999999999999999999999999988886
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 219 ~ 219 (240)
T 1ji0_A 219 L 219 (240)
T ss_dssp E
T ss_pred E
Confidence 3
No 6
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.74 E-value=4.5e-18 Score=149.78 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=70.2
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||+. +.+|+++||||||+||||.+++.++++|+++++ .|+|||++||+++++..+||++++|++|
T Consensus 124 ~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G 203 (240)
T 2onk_A 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203 (240)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 3456889999998 899999999999999999999999999999865 4999999999999999999999999988
Q ss_pred EEe
Q psy859 85 ELR 87 (247)
Q Consensus 85 ~i~ 87 (247)
+++
T Consensus 204 ~i~ 206 (240)
T 2onk_A 204 RIV 206 (240)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.74 E-value=8.3e-18 Score=157.39 Aligned_cols=82 Identities=23% Similarity=0.441 Sum_probs=74.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|||||||+||||..+..++++|+++++ .|+|||++||+++++..+||||++|++|++
T Consensus 163 ~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242 (366)
T ss_dssp TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 45789999998 789999999999999999999999999999964 599999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
++.....+
T Consensus 243 v~~g~~~e 250 (366)
T 3tui_C 243 IEQDTVSE 250 (366)
T ss_dssp EECCBHHH
T ss_pred EEEcCHHH
Confidence 87554444
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.73 E-value=4.8e-18 Score=150.36 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=75.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+||||.++..++++|++++++|+|||++||+++++..+||+|++|++|++
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 356789999998 799999999999999999999999999999977799999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
++..+..+
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 86444433
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.73 E-value=9.1e-18 Score=146.94 Aligned_cols=80 Identities=18% Similarity=0.430 Sum_probs=71.4
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||+. +.+|++|||||||+||||..+..+++.+++++++ |+|||++||+++.+ .+||+|++|++|
T Consensus 143 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G 221 (235)
T 3tif_A 143 PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDG 221 (235)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECC
Confidence 3456889999998 8999999999999999999999999999999655 99999999999965 789999999999
Q ss_pred EEeeccc
Q psy859 85 ELRKRRN 91 (247)
Q Consensus 85 ~i~~~~~ 91 (247)
+++...+
T Consensus 222 ~i~~~~~ 228 (235)
T 3tif_A 222 EVEREEK 228 (235)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9985333
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.73 E-value=9.6e-18 Score=149.72 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=70.2
Q ss_pred cchhhhHHHHHHhh-----CC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCE
Q psy859 10 ESPACILIQRQSWG-----IG------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 10 ~~~~~~~~~r~~~~-----~~------~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~dr 77 (247)
-.-.-|.|||||+. +. +|++|||||||+||||.++..++++|++++++ |+|||++||+++++..+|||
T Consensus 138 ~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~ 217 (266)
T 4g1u_C 138 DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR 217 (266)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence 34457889999998 55 99999999999999999999999999999654 68999999999999999999
Q ss_pred EEEEeCCEEe
Q psy859 78 LTIMRGNELR 87 (247)
Q Consensus 78 V~ii~~G~i~ 87 (247)
|++|++|+++
T Consensus 218 v~vl~~G~i~ 227 (266)
T 4g1u_C 218 IMLLAQGKLV 227 (266)
T ss_dssp EEEEETTEEE
T ss_pred EEEEECCEEE
Confidence 9999988876
No 11
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.73 E-value=1.1e-17 Score=148.86 Aligned_cols=76 Identities=17% Similarity=0.348 Sum_probs=70.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++++..+||++++|++|++
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 356889999998 899999999999999999999999999999976799999999999999999999999998887
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 217 ~ 217 (266)
T 2yz2_A 217 V 217 (266)
T ss_dssp E
T ss_pred E
Confidence 6
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.72 E-value=2.1e-17 Score=143.47 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=71.2
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-..|.|||||++ +.+|+++||||||+||||.++..++++|++++++|+|||++||+++++ .+||++++|++|+
T Consensus 138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 138 PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGK 216 (224)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 3457889999998 799999999999999999999999999999977799999999999998 7999999999999
Q ss_pred Eee
Q psy859 86 LRK 88 (247)
Q Consensus 86 i~~ 88 (247)
+++
T Consensus 217 i~~ 219 (224)
T 2pcj_A 217 VVG 219 (224)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.72 E-value=2.9e-17 Score=153.21 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=73.8
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+..+..+++.+.++ ++.|+|+|++||+++++..+||||++|++|+
T Consensus 137 ~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~ 216 (359)
T 3fvq_A 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGR 216 (359)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCE
Confidence 356789999998 8999999999999999999999999988776 4679999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++....+.+
T Consensus 217 i~~~g~~~e 225 (359)
T 3fvq_A 217 ILQTASPHE 225 (359)
T ss_dssp EEEEECHHH
T ss_pred EEEEeCHHH
Confidence 986544443
No 14
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.71 E-value=1.6e-17 Score=147.97 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=69.6
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL-CNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l-~drV~ii~~G~i~ 87 (247)
-|.|||||++ +.+|++|||||||+|||+.++..++++|++++++|+|||++||++++++.+ ||++++|++|+++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 7889999998 689999999999999999999999999999876799999999999999987 8999999988886
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 245 ~ 245 (267)
T 2zu0_C 245 K 245 (267)
T ss_dssp E
T ss_pred E
Confidence 3
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.70 E-value=5.3e-17 Score=151.17 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=74.6
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.++ |+|+|++||+++++..+||+|++|++|+
T Consensus 144 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 223 (355)
T 1z47_A 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223 (355)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 356889999998 7999999999999999999999999999998654 9999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 224 i~~~g~~~~ 232 (355)
T 1z47_A 224 VEQFGTPEE 232 (355)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 986544443
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.70 E-value=3.5e-17 Score=153.86 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=74.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.++ |+|+|++||+++++..+||||++|++|+
T Consensus 132 ~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (381)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 346789999998 6899999999999999999999999999999654 9999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 212 i~~~g~~~~ 220 (381)
T 3rlf_A 212 VAQVGKPLE 220 (381)
T ss_dssp EEEEECHHH
T ss_pred EEEEeCHHH
Confidence 986555444
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.70 E-value=4.2e-17 Score=144.46 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=71.9
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-..|.|||||+. +.+|++|||||||+|||+.++..+++.|.+++++ |+|||++||+++++..+||++++|++|
T Consensus 126 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 205 (253)
T 2nq2_C 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ 205 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 3456889999998 7899999999999999999999999999999766 999999999999999999999999999
Q ss_pred EEeec
Q psy859 85 ELRKR 89 (247)
Q Consensus 85 ~i~~~ 89 (247)
+ ++.
T Consensus 206 ~-~~~ 209 (253)
T 2nq2_C 206 N-FKF 209 (253)
T ss_dssp E-EEE
T ss_pred e-Eec
Confidence 9 753
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.70 E-value=5.8e-17 Score=151.04 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.+ .|.|+|++||+++++..+||+|++|++|+
T Consensus 132 ~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGK 211 (359)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 356889999998 899999999999999999999999999999865 49999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 212 i~~~g~~~~ 220 (359)
T 2yyz_A 212 LVQYGTPDE 220 (359)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 985444433
No 19
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.69 E-value=4.1e-17 Score=144.45 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=70.5
Q ss_pred hhhhHHHHHHhh-----CCCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEE
Q psy859 12 PACILIQRQSWG-----IGDPP-------LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLT 79 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~-------lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ 79 (247)
-.-|.|||||+. +.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||++++++.+||+++
T Consensus 125 ~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~ 204 (249)
T 2qi9_C 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAW 204 (249)
T ss_dssp GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 356789999998 67999 999999999999999999999999997679999999999999999999999
Q ss_pred EEeCCEEee
Q psy859 80 IMRGNELRK 88 (247)
Q Consensus 80 ii~~G~i~~ 88 (247)
+|++|++++
T Consensus 205 ~l~~G~i~~ 213 (249)
T 2qi9_C 205 LLKGGKMLA 213 (249)
T ss_dssp EEETTEEEE
T ss_pred EEECCEEEE
Confidence 999888763
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.69 E-value=4.7e-17 Score=151.10 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=74.5
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.+ .|+|+|++||+++++..+||+|++|++|+
T Consensus 139 ~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~ 218 (353)
T 1oxx_K 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218 (353)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 356789999998 799999999999999999999999999999865 49999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 986544444
No 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.69 E-value=9.7e-17 Score=143.42 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=67.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|.++.+ .|+|||++||++++++. ||+|++|++|++
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i 234 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSV 234 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEE
Confidence 46789999998 899999999999999999999999999999854 59999999999999986 999999998877
Q ss_pred e
Q psy859 87 R 87 (247)
Q Consensus 87 ~ 87 (247)
+
T Consensus 235 ~ 235 (271)
T 2ixe_A 235 C 235 (271)
T ss_dssp E
T ss_pred E
Confidence 5
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.69 E-value=5.6e-17 Score=150.51 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=73.9
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||++ +.+|++|+|||||+|||+..+..+++.|+++.+ .|+|+|++||+++++..+||+|++|++|
T Consensus 125 ~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G 204 (348)
T 3d31_A 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204 (348)
T ss_dssp GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSS
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 3457889999998 799999999999999999999999999999854 5999999999999999999999999999
Q ss_pred EEeecccc
Q psy859 85 ELRKRRNC 92 (247)
Q Consensus 85 ~i~~~~~~ 92 (247)
+++...++
T Consensus 205 ~i~~~g~~ 212 (348)
T 3d31_A 205 KLIQVGKP 212 (348)
T ss_dssp CEEEEECH
T ss_pred EEEEECCH
Confidence 99754444
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.69 E-value=7.2e-17 Score=150.89 Aligned_cols=83 Identities=24% Similarity=0.335 Sum_probs=74.4
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.+ .|.|+|++||+++++..+||+|++|++|+
T Consensus 138 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 217 (372)
T 1g29_1 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCE
Confidence 356889999998 789999999999999999999999999999865 49999999999999999999999999999
Q ss_pred Eeeccccch
Q psy859 86 LRKRRNCLS 94 (247)
Q Consensus 86 i~~~~~~~~ 94 (247)
++...++.+
T Consensus 218 i~~~g~~~~ 226 (372)
T 1g29_1 218 LQQVGSPDE 226 (372)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 986444443
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=2e-17 Score=148.68 Aligned_cols=80 Identities=20% Similarity=0.403 Sum_probs=73.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSI--VLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TI--llsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|++++++|+|| |++||+++++..+||+|++|++|+
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~ 240 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 46789999998 79999999999999999999999999999987669999 999999999999999999999999
Q ss_pred Eeecccc
Q psy859 86 LRKRRNC 92 (247)
Q Consensus 86 i~~~~~~ 92 (247)
+++..+.
T Consensus 241 i~~~g~~ 247 (279)
T 2ihy_A 241 SIQQGAV 247 (279)
T ss_dssp EEEEEEH
T ss_pred EEEECCH
Confidence 9864433
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.69 E-value=6.1e-17 Score=151.05 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=75.0
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++++..+||+|++|++|
T Consensus 131 ~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 210 (362)
T 2it1_A 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREG 210 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 3457889999998 7999999999999999999999999999998654 999999999999999999999999999
Q ss_pred EEeeccccch
Q psy859 85 ELRKRRNCLS 94 (247)
Q Consensus 85 ~i~~~~~~~~ 94 (247)
+++...++.+
T Consensus 211 ~i~~~g~~~~ 220 (362)
T 2it1_A 211 EILQVGTPDE 220 (362)
T ss_dssp EEEEEECHHH
T ss_pred EEEEEcCHHH
Confidence 9986544443
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.69 E-value=8.5e-17 Score=141.87 Aligned_cols=73 Identities=22% Similarity=0.416 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|++++ +|+|||++||++++++. ||++++|++|+++
T Consensus 145 ~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIV 222 (247)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 57889999998 89999999999999999999999999999984 69999999999999875 9999999988875
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.68 E-value=3.4e-17 Score=144.39 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=67.3
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh-cCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL-CNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l-~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++|||||||+|||+.++..++++|++++++|+|||++||++++++.+ ||++++|++|+++
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE
Confidence 7889999998 789999999999999999999999999999876799999999999999999 5999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
+
T Consensus 224 ~ 224 (250)
T 2d2e_A 224 A 224 (250)
T ss_dssp E
T ss_pred E
Confidence 5
No 28
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.68 E-value=9.4e-17 Score=150.28 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=73.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
.-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++++..+||+|++|++|++
T Consensus 141 ~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 45778999988 7999999999999999999999999999998654 99999999999999999999999999999
Q ss_pred eeccccch
Q psy859 87 RKRRNCLS 94 (247)
Q Consensus 87 ~~~~~~~~ 94 (247)
+...++.+
T Consensus 221 ~~~g~~~~ 228 (372)
T 1v43_A 221 LQIGSPTE 228 (372)
T ss_dssp EEEECHHH
T ss_pred EEeCCHHH
Confidence 86544444
No 29
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.66 E-value=1.7e-16 Score=140.94 Aligned_cols=73 Identities=16% Similarity=0.346 Sum_probs=66.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++ |+|||++||++++++. ||+|++|++|+++
T Consensus 155 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~-~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISS-AESIILLNKGKIV 232 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTT-CSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEE
Confidence 56889999998 789999999999999999999999999999854 8999999999999875 9999999988775
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.66 E-value=8.7e-17 Score=141.02 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|+++||||||+|||+.++..+++.|++++ +|+|||++||+++++. .||+|++|++|+++
T Consensus 139 ~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFIEKGQIT 216 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEEETTEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEEECCEEE
Confidence 57889999998 78999999999999999999999999999986 6999999999999987 49999999988875
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.65 E-value=4.3e-16 Score=142.20 Aligned_cols=73 Identities=15% Similarity=0.315 Sum_probs=66.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|++|||||||+|||+.+...+++.|.++. .++|+|++||+++.+.. ||+|++|++|+|+
T Consensus 190 ~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv 267 (306)
T 3nh6_A 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQILVIKDGCIV 267 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEEEEEECCEEE
Confidence 35789999998 68999999999999999999999999999985 47999999999999987 9999999987775
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.64 E-value=2.5e-16 Score=140.61 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=66.1
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC-EEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN-RLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d-rV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.|+++++ |||++||+++++..+|| ++++|++|+
T Consensus 127 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~ 203 (263)
T 2pjz_A 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNR 203 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCE
Confidence 356889999998 799999999999999999999999999998743 99999999999999999 999998777
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 204 i~ 205 (263)
T 2pjz_A 204 LQ 205 (263)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.62 E-value=5.4e-16 Score=134.99 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=65.2
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l-~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
-.-|.|||||+. +.+|+++||||||+|||+.++..+++.+ .++. +|+|||++||+++++.. ||++++|++|+
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 206 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK-ADKILILHEGS 206 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH-CSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHh-CCEEEEEECCE
Confidence 357889999998 7999999999999999999999999974 5553 48999999999999875 99999999888
Q ss_pred Ee
Q psy859 86 LR 87 (247)
Q Consensus 86 i~ 87 (247)
++
T Consensus 207 i~ 208 (229)
T 2pze_A 207 SY 208 (229)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=136.14 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=64.5
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLS---QIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~---~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-|.|||||+. +.+|+++||||||+||||.++..+++.+. ++ .+|+|||++||+++++. .||++++|++|
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~-~~d~v~~l~~G 204 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLP-QVDVIIVMSGG 204 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGG-GSSEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHH-hCCEEEEEeCC
Confidence 46789999998 78999999999999999999999999995 33 35899999999999986 69999999988
Q ss_pred EEe
Q psy859 85 ELR 87 (247)
Q Consensus 85 ~i~ 87 (247)
+++
T Consensus 205 ~i~ 207 (237)
T 2cbz_A 205 KIS 207 (237)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 35
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.58 E-value=3.1e-15 Score=147.96 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=69.2
Q ss_pred chhhhHHHHHHhh-----CCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE--
Q psy859 11 SPACILIQRQSWG-----IGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM-- 81 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~--lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii-- 81 (247)
.-.-|.|||||+. +.+|+ +|||||||+||||..+.+++++|++++++|.|||++||+++++.. ||+|++|
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~ii~l~~ 278 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA-ADYLIDIGP 278 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH-CSEEEEECS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh-CCEEEEecc
Confidence 3456779999988 57877 999999999999999999999999998889999999999998775 9999999
Q ss_pred ----eCCEEeecccc
Q psy859 82 ----RGNELRKRRNC 92 (247)
Q Consensus 82 ----~~G~i~~~~~~ 92 (247)
++|++++..+.
T Consensus 279 g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 279 GAGIHGGEVVAAGTP 293 (670)
T ss_dssp SSGGGCCSEEEEECH
T ss_pred cccccCCEEEEecCH
Confidence 56666544333
No 36
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.58 E-value=3.3e-15 Score=135.12 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=65.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l-~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
..|.|||||+. +.+|+++||||||+|||+.++..+++.+ .++. .|+|||++||+++++. .||++++|++|++
T Consensus 159 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G~i 236 (290)
T 2bbs_A 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGSS 236 (290)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETTEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECCeE
Confidence 56889999998 7899999999999999999999999974 4553 5899999999999986 4999999998887
Q ss_pred ee
Q psy859 87 RK 88 (247)
Q Consensus 87 ~~ 88 (247)
++
T Consensus 237 ~~ 238 (290)
T 2bbs_A 237 YF 238 (290)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.57 E-value=7.3e-15 Score=143.24 Aligned_cols=73 Identities=25% Similarity=0.401 Sum_probs=66.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||++ +.+|++++|||||+|||+.+++.+++.+.++. +|+|+|++||+++.+. .||+|++|++|+++
T Consensus 480 ~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEILVVDEGEII 557 (582)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 46789999998 78999999999999999999999999999985 4999999999999987 59999999987775
No 38
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.57 E-value=6.8e-15 Score=121.08 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=64.8
Q ss_pred hhhHHHHHHhhC-----------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWGI-----------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~~-----------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
..|.|||||+.+ ++|+++||||||+|||+..+..+++.+.++.+.|.|||++||++ ++..+||++++|
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii~l 135 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVIRI 135 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEEEE
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEEEE
Confidence 467899998853 79999999999999999999999999999877799999999999 678899999999
Q ss_pred --eCCEE
Q psy859 82 --RGNEL 86 (247)
Q Consensus 82 --~~G~i 86 (247)
.+|..
T Consensus 136 ~~~~g~s 142 (148)
T 1f2t_B 136 SLENGSS 142 (148)
T ss_dssp EEETTEE
T ss_pred EcCCCeE
Confidence 56654
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.56 E-value=8.7e-15 Score=143.37 Aligned_cols=72 Identities=22% Similarity=0.421 Sum_probs=65.8
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++++|||||+|||+.+...+.+.+.++. +|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV 568 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEEEEECSSSEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEE
Confidence 4789999998 78999999999999999999999999999985 69999999999999976 9999999877765
No 40
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.4e-15 Score=146.08 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=65.3
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..++++|+++. +.|+|||++||+++++..+||||++|++
T Consensus 467 ~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEE
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 45778999887 78999999999999999999999999999985 5699999999999999999999999984
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.56 E-value=7.3e-15 Score=143.25 Aligned_cols=73 Identities=25% Similarity=0.377 Sum_probs=66.6
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.+++.+++.++++.+ |+|+|++||+++.+. .||+|++|++|+++
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE-QADEIVVVEDGIIV 557 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 46889999998 789999999999999999999999999999854 999999999999987 59999999988775
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.56 E-value=1.1e-14 Score=142.57 Aligned_cols=73 Identities=21% Similarity=0.379 Sum_probs=66.1
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||++||+.+.+.+.+.++++ .+|+|+|++||+++.+. .||+|++|++|+++
T Consensus 479 ~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKILVLHEGKVA 556 (587)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEEEEETTEEE
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEEEEECCEEE
Confidence 34779999998 7899999999999999999999999999987 45999999999999986 69999999987775
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.55 E-value=8.8e-15 Score=142.26 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=66.3
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
-.-|.|||||+. +.+|++|||||||+|||+.++..++++|+++. +.|.|||++||+++++..+||||++|++
T Consensus 400 ~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 356789999988 78999999999999999999999999999986 4699999999999999999999999984
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.55 E-value=8.5e-15 Score=143.13 Aligned_cols=73 Identities=18% Similarity=0.350 Sum_probs=66.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.+++.+++.++++.+ |+|+|++||+++.+.. ||+|++|++|+++
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKN-ANMVAVLDQGKIT 560 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHH-SSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHc-CCEEEEEECCEEE
Confidence 45789999998 789999999999999999999999999999865 8999999999999875 9999999988775
No 45
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.55 E-value=9.5e-15 Score=142.46 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=65.7
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++++|||||+|||+.+.+.+++.+.++. +|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 554 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH-ADKIVVIENGHIV 554 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT-CSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEEEEEECCEEE
Confidence 34779999998 68999999999999999999999999998874 58999999999999875 9999999987775
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.55 E-value=1.3e-14 Score=143.60 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=62.2
Q ss_pred hhhhHHHHHHhh-----CCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG-----IGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~---P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-.-|.|||||+. +.+ |++|||||||+||||..+..++++|++++++|.|||++||+++++. .||||++|.
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~ 619 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLG 619 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEec
Confidence 456789999988 444 5699999999999999999999999999888999999999999885 599999993
No 47
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.55 E-value=1e-14 Score=135.15 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=68.5
Q ss_pred hhhHHHHHHhhC-----------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 13 ACILIQRQSWGI-----------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 13 ~~~~~~r~~~~~-----------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
..|.|||||+.+ ++|+++||||||+||||..+..+++.|.++++.|.|||++||+++. ...||++++|
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l 357 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLRI 357 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEE
Confidence 578899999883 7999999999999999999999999999998889999999999998 5679999999
Q ss_pred eCCEEe
Q psy859 82 RGNELR 87 (247)
Q Consensus 82 ~~G~i~ 87 (247)
++|+++
T Consensus 358 ~~G~i~ 363 (365)
T 3qf7_A 358 TGGVVV 363 (365)
T ss_dssp ETTEEC
T ss_pred ECCEEE
Confidence 999986
No 48
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.53 E-value=5.2e-15 Score=139.24 Aligned_cols=79 Identities=18% Similarity=0.368 Sum_probs=69.0
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|||||++ +.+|++|||||||+|||+..+..+++.|+++ ..|.|+|++||+++.+ ..||||++|++|+|+.
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAM-LECDQFLVIEENKVRQ 233 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE
Confidence 5889999998 7899999999999999999999999999886 4589999999998755 4599999999999986
Q ss_pred ccccch
Q psy859 89 RRNCLS 94 (247)
Q Consensus 89 ~~~~~~ 94 (247)
..++.+
T Consensus 234 ~g~~~e 239 (390)
T 3gd7_A 234 YDSILE 239 (390)
T ss_dssp ESSHHH
T ss_pred ECCHHH
Confidence 555544
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.53 E-value=2.2e-14 Score=141.54 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=67.0
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
.-.-|.|||||+. +.+|++|||||||+|||+.++..++++|+++. +.|.|||++||+++++..+||||++|++
T Consensus 469 ~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 3456789999988 78999999999999999999999999999985 5699999999999999999999999984
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.52 E-value=1.5e-14 Score=140.85 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=67.4
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-.-|.|||||+. +.+|++|||||||+|||+.++..++++|++++ +.|.|||++||+++++..+||||++|++|
T Consensus 383 ~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 3456779999988 68999999999999999999999999999986 46999999999999999999999999863
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.51 E-value=2.7e-14 Score=138.81 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=67.9
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
-.-|.|||||+. +.+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++++..+||+|++|++|
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 345789999988 6899999999999999999999999999999778999999999999999999999999864
No 52
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.50 E-value=1.7e-15 Score=131.47 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=66.0
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-.-|.|||||+. +.+|+++||||||+||||.++..+++.|++++++|+|||++||++++++.+||+++++. |+
T Consensus 131 ~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~ 209 (214)
T 1sgw_A 131 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TK 209 (214)
T ss_dssp GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C-
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Cc
Confidence 3456889999998 79999999999999999999999999999987669999999999999999999988554 44
Q ss_pred E
Q psy859 86 L 86 (247)
Q Consensus 86 i 86 (247)
|
T Consensus 210 ~ 210 (214)
T 1sgw_A 210 I 210 (214)
T ss_dssp -
T ss_pred c
Confidence 4
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.49 E-value=6.1e-14 Score=138.42 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=67.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
.-|.|||||++ +.+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++++..+||+|++|++|
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 45789999998 6899999999999999999999999999999777999999999999999999999999864
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=6.9e-14 Score=138.16 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=69.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
-.-|.|||||+. +.+|++|||||||+||||..+..++++|++++++|.|||++||+++++..+||+|++|++|..
T Consensus 220 ~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 345779999988 689999999999999999999999999999988899999999999999999999999997653
No 55
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=9.2e-14 Score=142.90 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=60.5
Q ss_pred hhhHHHHHHhh-----CC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWG-----IG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~---~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-|.|||||+. +. +|+++||||||+|||+..++.+++.|.+++++|.|||++||+++++.. ||+|++|.
T Consensus 805 ~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLg 881 (916)
T 3pih_A 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLG 881 (916)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEec
Confidence 34667777776 33 458999999999999999999999999998889999999999999876 99999994
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.46 E-value=8.7e-14 Score=135.49 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=67.6
Q ss_pred chhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 11 SPACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
.-.-|.|||||+. +.+|++|||||||+|||+..+..++++|+++++ |+|||++||+++++..+||+|.+|++|.
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 3346779999988 789999999999999999999999999999965 9999999999999999999999998754
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.45 E-value=1.7e-13 Score=139.94 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=62.3
Q ss_pred hhhhHHHHHHhh-----CCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG-----IGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~---P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-.-|.|||||+. +.+ |+++||||||+|||+..+..++++|+++++.|.|||++||+++++ ..||+|++|.
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~ 806 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIG 806 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEC
Confidence 345678888877 454 799999999999999999999999999988899999999999999 6799999993
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.45 E-value=3.4e-13 Score=139.52 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=68.4
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+++.|++ .|.|||++||+++++..+||+|++|++|+++
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 46789999988 789999999999999999999999999987 5999999999999999999999999999997
Q ss_pred e
Q psy859 88 K 88 (247)
Q Consensus 88 ~ 88 (247)
.
T Consensus 625 ~ 625 (986)
T 2iw3_A 625 K 625 (986)
T ss_dssp E
T ss_pred c
Confidence 4
No 59
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.44 E-value=2.7e-13 Score=139.89 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=61.9
Q ss_pred hhhhHHHHHHhh-----CCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG-----IGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~---P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-.-|.|||||+. +.+ |+++||||||+|||+..+..++++|+++++.|.|||++||+++++. .||+|++|.
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEc
Confidence 345778888877 444 5999999999999999999999999999888999999999999985 699999993
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.42 E-value=4.8e-13 Score=138.31 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=61.3
Q ss_pred hhhHHHHHHhh-----CCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 13 ACILIQRQSWG-----IGD---PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~---P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-|.|||||+. +.+ |+++||||||+|||+..+..++++|.++++.|.|||++||+++++. .||+|++|.
T Consensus 863 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~ 939 (993)
T 2ygr_A 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWIIDLG 939 (993)
T ss_dssp GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEC
Confidence 45668888877 444 5999999999999999999999999999888999999999999985 799999994
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.41 E-value=1.8e-13 Score=144.62 Aligned_cols=72 Identities=18% Similarity=0.374 Sum_probs=64.9
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
-|.|||||+. +.+|++|||||||+|||+.+.+.+++.+++. .+|+|+|++||+++++.. ||||++|++|+++
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVK 1248 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGS-CSEEEEEETBEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHc-CCEEEEEECCEEE
Confidence 4779999988 6899999999999999999999999999875 469999999999999865 9999999987775
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.38 E-value=7.1e-13 Score=136.36 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=69.5
Q ss_pred chhhhHHHHHHhh-----CCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE--
Q psy859 11 SPACILIQRQSWG-----IGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM-- 81 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P~--lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii-- 81 (247)
...-|.||+||+. ..+|+ ++||||||+||||..+.+++++|+++++.|.|||++||+++.+.. ||+|++|
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgp 540 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGP 540 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEES
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcC
Confidence 3445778888877 44555 999999999999999999999999998889999999999999876 9999999
Q ss_pred ----eCCEEeeccccch
Q psy859 82 ----RGNELRKRRNCLS 94 (247)
Q Consensus 82 ----~~G~i~~~~~~~~ 94 (247)
++|++++..+..+
T Consensus 541 gag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 541 GGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp SSGGGCSEEEEEECHHH
T ss_pred CcccCCCEEEEeechhh
Confidence 7777775444444
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.38 E-value=8.7e-13 Score=121.66 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=66.6
Q ss_pred hhHHHHHHhh-----CCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE----e
Q psy859 14 CILIQRQSWG-----IGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM----R 82 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii----~ 82 (247)
.|.|||||+. +.+| ++|||||||+|||+..+..+.+.|+++. +|.|||++||+++.+. .||++++| +
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~~d~i~~l~k~~~ 373 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-RAHHHYKVEKQVE 373 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-TCSEEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-hcCeEEEEEEecc
Confidence 5889999987 5788 9999999999999999999999999986 6999999999997765 69999999 9
Q ss_pred CCEEee
Q psy859 83 GNELRK 88 (247)
Q Consensus 83 ~G~i~~ 88 (247)
+|+++.
T Consensus 374 ~G~~~~ 379 (415)
T 4aby_A 374 DGRTVS 379 (415)
T ss_dssp TTEEEE
T ss_pred CCceEE
Confidence 999863
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.35 E-value=2e-12 Score=133.72 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=72.9
Q ss_pred cchhhhHHHHHHhh-----CCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE-
Q psy859 10 ESPACILIQRQSWG-----IGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM- 81 (247)
Q Consensus 10 ~~~~~~~~~r~~~~-----~~~--P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii- 81 (247)
.+-.-|.||+||+. ..+ |+++||||||+||||....++++.|+++++.|.|||+++|+++++. .||+|++|
T Consensus 518 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lg 596 (993)
T 2ygr_A 518 AAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIG 596 (993)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEec
Confidence 34445667777776 345 6999999999999999999999999999989999999999999986 69999999
Q ss_pred -----eCCEEeeccccchhhh
Q psy859 82 -----RGNELRKRRNCLSFRK 97 (247)
Q Consensus 82 -----~~G~i~~~~~~~~~~~ 97 (247)
++|++++..+..++..
T Consensus 597 p~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 597 PGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp SSSGGGCCSCCEEECHHHHHH
T ss_pred CccccCCCEEEEeeCHHHhhh
Confidence 6888887666655544
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.34 E-value=1.3e-12 Score=137.99 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=66.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|||||+. +.+|++|||||||++||+.+.+.+.+.++.+ .+|+|+|++||.++.+.. ||+|++|++|++++
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE 604 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHH-HTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE
Confidence 4779999988 6899999999999999999999999999876 459999999999999987 99999999888875
Q ss_pred c
Q psy859 89 R 89 (247)
Q Consensus 89 ~ 89 (247)
+
T Consensus 605 ~ 605 (1284)
T 3g5u_A 605 Q 605 (1284)
T ss_dssp E
T ss_pred E
Confidence 3
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.34 E-value=6.8e-13 Score=137.27 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=66.0
Q ss_pred hhhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 13 ACILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 13 ~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.-|.|||||+. +.+|++|||||||+|||+.++..+++.|+++ |.|||++||+++++..+||++++|++|+++
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv 977 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCC
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 35679999988 7899999999999999999999999988654 679999999999999999999999999986
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.31 E-value=3.4e-12 Score=131.74 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=74.8
Q ss_pred CcchhhhHHHHHHhh-----CCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 9 SESPACILIQRQSWG-----IGD--PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 9 ~~~~~~~~~~r~~~~-----~~~--P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
+.+-.-|.||+||+. ..+ |+++||||||+||||....++++.|+++++.|.|||+++|+++++. .||+|++|
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~L 578 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDI 578 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEe
Confidence 334455667777777 344 5999999999999999999999999999888999999999999986 69999999
Q ss_pred ------eCCEEeeccccchhhh
Q psy859 82 ------RGNELRKRRNCLSFRK 97 (247)
Q Consensus 82 ------~~G~i~~~~~~~~~~~ 97 (247)
++|++++..+..++..
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTT
T ss_pred CCCccCCCCEEEEecCHHHHHh
Confidence 7999998777766654
No 68
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.30 E-value=5.2e-12 Score=115.14 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=61.8
Q ss_pred hhhhHHHHHHh------h-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEE
Q psy859 12 PACILIQRQSW------G-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTI 80 (247)
Q Consensus 12 ~~~~~~~r~~~------~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~i 80 (247)
-..|.||||++ + .++|++|||||||+||||..+..+++.|.++.+.|.|||++||+. ++...||++++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~~d~~~~ 325 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVIR 325 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHhCCEEEE
Confidence 45788999843 3 579999999999999999999999999999877789999999995 57789999999
Q ss_pred Ee
Q psy859 81 MR 82 (247)
Q Consensus 81 i~ 82 (247)
|.
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 69
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.29 E-value=1.7e-12 Score=137.57 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=63.3
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
|.|||||+. +.+|++|||||||++||+.+-+.+.+.|+++ .+|+|+|+++|-++.+.. ||+|++|++|+|+
T Consensus 1219 SgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~-~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA-REGRTCIVIAHRLNTVMN-ADCIAVVSNGTII 1294 (1321)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT-SSSSEEEEECSSSSTTTT-CSEEEEESSSSEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHh-CCEEEEEECCEEE
Confidence 679999998 7899999999999999999999999999875 459999999999999876 8888888876665
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.27 E-value=4.9e-12 Score=134.07 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=65.5
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEee
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELRK 88 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~~ 88 (247)
-|.|||||++ ..+|+++||||||++||+.+.+.+.+.|.++. +|+|+|++||.++.+.. ||+|++|++|+|++
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~-aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRN-ADLIISCKNGQVVE 632 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTT-CSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHh-CCEEEEeeCCeeec
Confidence 4679999998 79999999999999999999999999998874 69999999999998865 99999999888764
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.27 E-value=9e-12 Score=127.21 Aligned_cols=87 Identities=20% Similarity=0.331 Sum_probs=74.3
Q ss_pred chhhhHHHHHHhh-----CCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEE--
Q psy859 11 SPACILIQRQSWG-----IGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM-- 81 (247)
Q Consensus 11 ~~~~~~~~r~~~~-----~~~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii-- 81 (247)
+-.-|.||+||+. ..+| .++||||||+||||....+++++++++++.|.|||+++|+++.+. .||+|++|
T Consensus 377 ~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgp 455 (842)
T 2vf7_A 377 TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGP 455 (842)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECS
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCC
Confidence 3345667777776 5677 599999999999999999999999999888999999999999775 69999999
Q ss_pred ----eCCEEeeccccchhhhh
Q psy859 82 ----RGNELRKRRNCLSFRKE 98 (247)
Q Consensus 82 ----~~G~i~~~~~~~~~~~~ 98 (247)
++|++++..+..++.+.
T Consensus 456 gaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 456 EAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SSGGGCCSEEEEECGGGGGGC
T ss_pred CcccCCCEEEEecCHHHHHhc
Confidence 79999987777776553
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.24 E-value=7.8e-12 Score=120.12 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=62.5
Q ss_pred hHHHHHHhh-----CCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 15 ILIQRQSWG-----IGDP--PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
|.||+||+. +.+| ++|||||||+|||+.++..+++.|+++++ |.|||++||+++.+. .||++++|.+|.
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~~ 474 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQV 474 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECCE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEeccc
Confidence 778888877 6788 99999999999999999999999999976 999999999999887 599999996654
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.18 E-value=4.8e-11 Score=107.86 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=63.3
Q ss_pred hhhhHHHHHHhh----C-----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE--EE
Q psy859 12 PACILIQRQSWG----I-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL--TI 80 (247)
Q Consensus 12 ~~~~~~~r~~~~----~-----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV--~i 80 (247)
-..|.||||++. + .+|+++||||||+||||..+..++++++++ .+|.|||++||++ ++..+||++ ++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~-~~~~~~d~~~~v~ 295 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNK-IVMEAADLLHGVT 295 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCT-TGGGGCSEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCH-HHHhhCceEEEEE
Confidence 356889999887 2 578999999999999999999999999998 4589999999996 567789987 78
Q ss_pred EeCCEEe
Q psy859 81 MRGNELR 87 (247)
Q Consensus 81 i~~G~i~ 87 (247)
|.+|...
T Consensus 296 ~~~g~s~ 302 (322)
T 1e69_A 296 MVNGVSA 302 (322)
T ss_dssp ESSSCEE
T ss_pred EeCCEEE
Confidence 8888653
No 74
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.10 E-value=8.3e-11 Score=109.36 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=61.8
Q ss_pred hhhHHHHHHhh-----C---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEE
Q psy859 13 ACILIQRQSWG-----I---------GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78 (247)
Q Consensus 13 ~~~~~~r~~~~-----~---------~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV 78 (247)
.+|.||+|++. + ++|++|+|||||++||+..+..+++.+.++. .|+|++|| +++ .||++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~---~~~~i 337 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP---GAALT 337 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT---TCSEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc---cCCEE
Confidence 47899999888 4 7999999999999999999999999998763 79999999 444 89999
Q ss_pred EEEeCCEEee
Q psy859 79 TIMRGNELRK 88 (247)
Q Consensus 79 ~ii~~G~i~~ 88 (247)
++|++|+++.
T Consensus 338 ~~l~~G~i~~ 347 (359)
T 2o5v_A 338 LRAQAGRFTP 347 (359)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEe
Confidence 9999999974
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.10 E-value=1e-11 Score=102.42 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=52.7
Q ss_pred hHHHHHHhh-----CCCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 15 ILIQRQSWG-----IGDPPLVFLDEPTSGVDPI----------------SRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 15 ~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~----------------~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
+.++||++. ..+|++++|||||+|||+. .+..+++.+++++++|.|+|++||++++++.
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 567777776 7899999999999999999 6688999998887679999999999999987
No 76
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.06 E-value=8.8e-10 Score=92.68 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=58.5
Q ss_pred hhhhHHHHHHhh---------CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG---------IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~---------~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-.-|.||||+++ ..+|+++||||||+|||+..+..++++|+++.+ +.++|++||.... ...||+++.+.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~-~~~ad~i~~v~ 140 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVM-MANADKIIGVS 140 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHH-HTTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHH-HHhCCEEEEEE
Confidence 446788888877 146799999999999999999999999998754 5688999999765 46799998664
Q ss_pred --CCE
Q psy859 83 --GNE 85 (247)
Q Consensus 83 --~G~ 85 (247)
+|.
T Consensus 141 ~~~g~ 145 (173)
T 3kta_B 141 MRDGV 145 (173)
T ss_dssp EETTE
T ss_pred ecCCE
Confidence 554
No 77
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.01 E-value=4.6e-10 Score=103.40 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=60.3
Q ss_pred hhhHHHHHHhh-----------CCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEE
Q psy859 13 ACILIQRQSWG-----------IGD-PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTI 80 (247)
Q Consensus 13 ~~~~~~r~~~~-----------~~~-P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~i 80 (247)
..|.||++++. .++ |+++||||||+|||+..+..+++.|.++. .+.+||++||+++ +..+||++++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d~~~~ 357 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVADVIIN 357 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCSEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCCEEEE
Confidence 57889998762 568 99999999999999999999999998874 4568999999986 6889999999
Q ss_pred EeC
Q psy859 81 MRG 83 (247)
Q Consensus 81 i~~ 83 (247)
|++
T Consensus 358 l~k 360 (371)
T 3auy_A 358 VKK 360 (371)
T ss_dssp EEE
T ss_pred EEe
Confidence 973
No 78
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.95 E-value=2.3e-10 Score=97.04 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=52.6
Q ss_pred hCCCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH---------Hhhc-CEEEEEeC
Q psy859 23 GIGDPPLVFLDEPTSGVD-----PISRHRLWAVLSQIQKTGQSIVLTSHSMDEC---------EALC-NRLTIMRG 83 (247)
Q Consensus 23 ~~~~P~lLiLDEPTsGLD-----p~~r~~i~~~l~~l~~~G~TIllsSH~l~e~---------e~l~-drV~ii~~ 83 (247)
..++|+++++||||+++| +..++.++++++.+++.|+|||++||+++++ +.+| |+|++|+.
T Consensus 132 ~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 368999999999999998 7777779999999988899999999999999 7898 99999974
No 79
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.94 E-value=2.6e-09 Score=99.95 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=61.3
Q ss_pred hhhhHHHHHHhh-----C----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 12 PACILIQRQSWG-----I----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~----~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
-..|.|||+++. + .+|++++||||+++||+..+..++++|.++...|.++|++||+... ...||+++.|.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEEEEE
Confidence 347889988887 2 6899999999999999999999999999986668999999999655 55799999996
Q ss_pred C
Q psy859 83 G 83 (247)
Q Consensus 83 ~ 83 (247)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 3
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.81 E-value=9.9e-10 Score=105.12 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=59.6
Q ss_pred hhhhHHHHHHhh-------CCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH------HHHh
Q psy859 12 PACILIQRQSWG-------IGDPPL----VFLDE-PTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD------ECEA 73 (247)
Q Consensus 12 ~~~~~~~r~~~~-------~~~P~l----LiLDE-PTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~------e~e~ 73 (247)
..-|.|||||++ +.+|++ +|||| ||+|||+. +..+++++++ .|.|++++||+.+ ++..
T Consensus 234 ~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 234 KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHH
Confidence 356778999886 579999 99999 99999999 6666666654 3789999999887 8889
Q ss_pred hcCE-----EEEEe-CCEEe
Q psy859 74 LCNR-----LTIMR-GNELR 87 (247)
Q Consensus 74 l~dr-----V~ii~-~G~i~ 87 (247)
+||+ |++|+ +|+++
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC
T ss_pred hcccccCCEEEEEeCCCcEE
Confidence 8888 88888 78775
No 81
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.81 E-value=7.1e-09 Score=86.75 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=51.8
Q ss_pred hhHHHHHHhh----------CCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc---CCHHHHHhhcCE
Q psy859 14 CILIQRQSWG----------IGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVLTS---HSMDECEALCNR 77 (247)
Q Consensus 14 ~~~~~r~~~~----------~~~P~lLiLDE--PTsGLDp~~r~~i~~~l~~l~~~G~TIllsS---H~l~e~e~l~dr 77 (247)
-|.||||++. ..+|+++|||| ||+++|+..++.+++.+.+ .+.|+|++| |+++.++.+|++
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc
Confidence 5678877643 47999999999 9999999999999998854 477788877 599999999998
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.77 E-value=1.3e-10 Score=97.97 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=53.1
Q ss_pred CCCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 24 IGDPPLVFLDEPTSGV----DPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL----Dp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
+.+|++++|||||+|+ |+..++++++.+.+++. .|.|++++||+++++..+||+|++|.
T Consensus 139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 139 LAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 5689999999999998 89999999999999864 59999999999999999999999985
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.75 E-value=2.4e-09 Score=103.03 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=65.2
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCcEEEEEcCCH----------HHHHh
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPI-----SRHRLWAVLSQIQKTGQSIVLTSHSM----------DECEA 73 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~-----~r~~i~~~l~~l~~~G~TIllsSH~l----------~e~e~ 73 (247)
-|.+++|++. ..+|+++|+| ||+|||+. .+..++++++.+++.|.|+|++||++ .+++.
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~ 432 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIST 432 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTT
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccce
Confidence 3667777766 6899999999 99999999 99999999999988899999999999 88899
Q ss_pred hcCEEEEEeCCEE
Q psy859 74 LCNRLTIMRGNEL 86 (247)
Q Consensus 74 l~drV~ii~~G~i 86 (247)
+||+|++|++|+.
T Consensus 433 ~~D~vi~L~~ge~ 445 (525)
T 1tf7_A 433 ITDTIILLQYVEI 445 (525)
T ss_dssp TCSEEEEEEEEEE
T ss_pred eeeEEEEEEEEEe
Confidence 9999999998874
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.70 E-value=1.4e-08 Score=104.71 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=53.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i-~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
+.+|+++||||||+|+||..+..+ |.++..+.+ .|.|+|++||+.+. ..+||++..+.+|++.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVT 803 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEE
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEE
Confidence 789999999999999999999887 788888865 59999999999654 4677777777777765
No 85
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.69 E-value=1.4e-09 Score=93.53 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 17 IQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 17 ~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
|||||+. +.+|++|||||||+| ++..++++|+++ ++|+||| +||++++++. ...+++|..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----------------CCH
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 7888887 679999999999999 899999999988 6799999 9999998775 333455543
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.66 E-value=2.1e-08 Score=83.47 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=52.7
Q ss_pred CCCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEcCCH--------HHHHhhcCEEEEEeCCE
Q psy859 24 IGDPP--LVFLDEPTSGV--DPISRHRLWAVLSQIQ-KTGQSIVLTSHSM--------DECEALCNRLTIMRGNE 85 (247)
Q Consensus 24 ~~~P~--lLiLDEPTsGL--Dp~~r~~i~~~l~~l~-~~G~TIllsSH~l--------~e~e~l~drV~ii~~G~ 85 (247)
.++|+ ++++||||+++ |+..++.+++.++++. +.|.||+++||++ ..++.+||+|++|+.+.
T Consensus 119 ~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 119 KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 46999 99999999877 9999999999999985 5699999999999 55999999999998654
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.65 E-value=2.9e-08 Score=87.64 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=50.1
Q ss_pred hCCCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh-CCcEEEEEcCCH--H--------------------HHH
Q psy859 23 GIGDPPLVFLDEPTS---G---VDP-ISRHRLWAVLSQIQK-TGQSIVLTSHSM--D--------------------ECE 72 (247)
Q Consensus 23 ~~~~P~lLiLDEPTs---G---LDp-~~r~~i~~~l~~l~~-~G~TIllsSH~l--~--------------------e~e 72 (247)
..++|+++|+||||+ | +|+ .....+++.|+++++ .|.|||++||.. + .++
T Consensus 144 ~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~ 223 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALR 223 (296)
T ss_dssp HTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHH
T ss_pred HhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhH
Confidence 478999999999999 5 566 677889999999865 499999999995 5 789
Q ss_pred hhcCEEEEEeCCEE
Q psy859 73 ALCNRLTIMRGNEL 86 (247)
Q Consensus 73 ~l~drV~ii~~G~i 86 (247)
.+||+|++|++|+.
T Consensus 224 ~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 224 QLSDTIIALERNQQ 237 (296)
T ss_dssp HHCSEEEEEEEC--
T ss_pred hhCcEEEEEecCcc
Confidence 99999999998875
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.59 E-value=2.4e-08 Score=96.07 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=55.4
Q ss_pred CCCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH---------HHhhcCEEEEEeC
Q psy859 24 IGDPPLVFLDEPTS-----GVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE---------CEALCNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEPTs-----GLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e---------~e~l~drV~ii~~ 83 (247)
-++|++++|||||+ ++|+..++.++++++.+++.|.|||++||++++ ++.+||+|++|++
T Consensus 136 ~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 136 KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 57999999999997 579999999999999998789999999999998 4778999999998
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.52 E-value=1.8e-07 Score=97.41 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=56.7
Q ss_pred CCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISR-HRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r-~~i~~~l~~l~~~-G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
+.+|.++|||||++|+|+... ..+|.++..+.++ |.++|++||+++.++.+||++.+++ |++.
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEEE
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeEE
Confidence 789999999999999999985 5589999998766 9999999999999999999998875 7775
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.40 E-value=6e-08 Score=80.99 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=46.7
Q ss_pred CCCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHH-hCCcEEEEEcCCHHH----HHhhcCEEEEEeCCE
Q psy859 24 IGDPPLVFLDEPTSGVDPI-------S-----RHRLWAVLSQIQ-KTGQSIVLTSHSMDE----CEALCNRLTIMRGNE 85 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~-------~-----r~~i~~~l~~l~-~~G~TIllsSH~l~e----~e~l~drV~ii~~G~ 85 (247)
.++|+++++||||+++|+. . .+.+++.+.++. +.|.|||++||.+++ ++..||++++|++|+
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 6799999999999999983 2 236677777764 459999999996666 999999999999764
No 91
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.33 E-value=6.7e-09 Score=98.34 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEcCCHHH--HHhhcCEEE-EEeCCE
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-----KTG----QSIVLTSHSMDE--CEALCNRLT-IMRGNE 85 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-----~~G----~TIllsSH~l~e--~e~l~drV~-ii~~G~ 85 (247)
+|++++|||||+||||..+..+++.++++. +.| .+|++|||++++ ++.+||++. .+..|.
T Consensus 184 kpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 999999999999999999999999999874 333 678899999998 999999985 666665
No 92
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.29 E-value=1e-06 Score=90.80 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=49.6
Q ss_pred hHHHHHHhh----CCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCcEEEEEcCCHHHHHhhcCEE
Q psy859 15 ILIQRQSWG----IGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQK-TGQSIVLTSHSMDECEALCNRL 78 (247)
Q Consensus 15 ~~~~r~~~~----~~~P~lLiLDEPTsGLDp~~r~~i~-~~l~~l~~-~G~TIllsSH~l~e~e~l~drV 78 (247)
+.+|+++.. +.+|+++||||||+|+||..+..+. .++..+.+ .|.|+|++||+++.++ +||+.
T Consensus 737 s~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~~ 805 (918)
T 3thx_B 737 MEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHT
T ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhhc
Confidence 345555444 6899999999999999999988875 77777754 6999999999987664 56543
No 93
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.20 E-value=3.6e-07 Score=92.89 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=54.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i-~~~l~~l~~-~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
+.+|+++|||||++|+|+.....+ |.++..+.+ .|.++|++||+.+.+. +||++..+.+|++.
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLD 748 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEE
Confidence 789999999999999999888775 889988877 5999999999997654 89998888888774
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.13 E-value=1.3e-06 Score=71.25 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=42.6
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 24 IGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 24 ~~~P~lLiLDEPTs-GLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
+.+|++|+||||++ |+|+..+..+++++....++|+++|+|||...+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45899999999985 9999999999999988877899999999987553
No 95
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.12 E-value=2.9e-06 Score=70.28 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCCCCHHHH--------HHHHHHHHHHHh-CCcEEEEEcCCHH-------------HHHhhcCEEEEEeC
Q psy859 26 DPPLVFLDEPTSGVDPISR--------HRLWAVLSQIQK-TGQSIVLTSHSMD-------------ECEALCNRLTIMRG 83 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r--------~~i~~~l~~l~~-~G~TIllsSH~l~-------------e~e~l~drV~ii~~ 83 (247)
+|+++++||||+++|+... ..+.+.|+++.+ .|.|+|+++|... .++..||.+++|++
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 5999999999999998432 345555666644 4999999999876 67899999999985
Q ss_pred C
Q psy859 84 N 84 (247)
Q Consensus 84 G 84 (247)
.
T Consensus 185 ~ 185 (220)
T 2cvh_A 185 L 185 (220)
T ss_dssp C
T ss_pred e
Confidence 3
No 96
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.08 E-value=2.9e-06 Score=71.38 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=40.9
Q ss_pred CCCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHH-hCCcEEEEEcCCHHHHHh-----------------
Q psy859 24 IGDPPLVFLDEPTSGVDPI-------S-----RHRLWAVLSQIQ-KTGQSIVLTSHSMDECEA----------------- 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~-------~-----r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~----------------- 73 (247)
.++|+++++|||++++|+. . ...++..+.++. +.|.|||+++|...+.+.
T Consensus 117 ~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 117 ESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp HSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------
T ss_pred cCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChh
Confidence 4789999999999999985 3 344555565554 349999999998877665
Q ss_pred --hcCEEEEEeCC
Q psy859 74 --LCNRLTIMRGN 84 (247)
Q Consensus 74 --l~drV~ii~~G 84 (247)
+||.+++|++|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 89999999865
No 97
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.00 E-value=2.7e-06 Score=77.57 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~ 83 (247)
..+|++++|||||+ .++++++..+...+.|+++++|.++ +...|||+++|.+
T Consensus 238 ~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~ 289 (330)
T 2pt7_A 238 RMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSS 289 (330)
T ss_dssp TSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHH
T ss_pred hhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhc
Confidence 67999999999998 2467788777554568999999998 7774555444443
No 98
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.96 E-value=1.2e-06 Score=80.86 Aligned_cols=64 Identities=14% Similarity=0.289 Sum_probs=48.5
Q ss_pred HHH-HHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 16 LIQ-RQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK--TGQ-----SIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 16 ~~~-r~~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~--~G~-----TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.+| |..+++++|++ |+|+||..+..+++++.++.+ .|. ||+++||+++ +.+||++.+|.+|+|+
T Consensus 174 ~g~r~v~lal~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 174 RAARDVGLASGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp HHHHHHHHHTTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHcCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 444 34444788887 999999999999999999863 587 9999999999 6755555555555544
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.75 E-value=1.4e-05 Score=69.96 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHH-hCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTS--GVDPISR---HRLWAVLSQIQ-KTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTs--GLDp~~r---~~i~~~l~~l~-~~G~TIllsSH~l~e~e~ 73 (247)
+.+|+++++||||+ ++|+... ..+++.|.++. +.|.|||++||....++.
T Consensus 131 ~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~ 186 (279)
T 1nlf_A 131 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAM 186 (279)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred cCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 67899999999999 9998544 77888888875 569999999999987754
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.60 E-value=4.3e-05 Score=77.34 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=39.8
Q ss_pred CCCCCEEEEeCC---CCCCCHHHHH-HHHHHHHHHHhCCcEEEEEcCCHHHHHhhc
Q psy859 24 IGDPPLVFLDEP---TSGVDPISRH-RLWAVLSQIQKTGQSIVLTSHSMDECEALC 75 (247)
Q Consensus 24 ~~~P~lLiLDEP---TsGLDp~~r~-~i~~~l~~l~~~G~TIllsSH~l~e~e~l~ 75 (247)
+.+|+++||||| |+++|+.+.. .+.+.+.+ .|.|+|++||+.+.+. +|
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT-CC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH-hh
Confidence 789999999999 9999998863 56666654 5899999999998765 44
No 101
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.54 E-value=7.7e-05 Score=67.28 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcC---------CHHHHHhhcCEEEEEeCCEE
Q psy859 24 IGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH---------SMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 24 ~~~P~--lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH---------~l~e~e~l~drV~ii~~G~i 86 (247)
..+|+ +|+|| ||+|+|+..+. +++. ..|.|++++|| .++.+...+.+|.++..|+.
T Consensus 217 ~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 217 SGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp TTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 57999 99999 99999998653 3443 45999999999 67788888999999999976
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.53 E-value=2.6e-05 Score=68.88 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.+|+++++|||| |+.....+ ++. ...|.+|++++|+.+ +...|||+++|.
T Consensus 97 ~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 97 EDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred hCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 499999999999 98886543 433 356999999999987 677899988775
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.50 E-value=3.5e-05 Score=70.62 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 25 GDPPLVFLDEPTSGVDPIS------------RHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~------------r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
.+|+++|+||||+++|+.. .+.++..|.++. +.|.|||+++|....+...+........|+++
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence 7999999999999999852 345555666654 45999999999998777655556666777765
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.49 E-value=2.4e-05 Score=72.29 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=42.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G 84 (247)
..+|+++++|||+ |+.. ++.+.++...|.||++|+|..+.+ ..|||++.|..|
T Consensus 194 ~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 5799999999999 6554 444445566799999999999988 679998888643
No 105
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.43 E-value=2.1e-05 Score=74.70 Aligned_cols=61 Identities=16% Similarity=0.366 Sum_probs=46.4
Q ss_pred HHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEcCCHHHHHhhcCEEEEEeCCEE
Q psy859 18 QRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---T-GQ-----SIVLTSHSMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 18 ~r~~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~---~-G~-----TIllsSH~l~e~e~l~drV~ii~~G~i 86 (247)
+|..+++++|++ |+||||..+..+++++.++.+ + |. ||+++||+++ +.+||++++|.+|++
T Consensus 264 qrvslAl~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 264 REIALAIGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHI 333 (438)
T ss_dssp HHHHHHTTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEE
T ss_pred HHHHHHhCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEE
Confidence 445555788887 999999999999999998855 3 75 9999999999 664555555444444
No 106
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00019 Score=66.63 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=47.2
Q ss_pred CCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcC---------CHHHHHhhcCEEEEEeCCEE
Q psy859 24 IGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSH---------SMDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 24 ~~~P~--lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH---------~l~e~e~l~drV~ii~~G~i 86 (247)
..+|+ +|+|| ||+|+|+..+. +.+. ..|.|++++|| .++.+..++.+|.++..|+.
T Consensus 274 ~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 274 SGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp TTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred hcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 68999 99999 99999998663 3343 35999999999 57788888999999999975
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00022 Score=57.43 Aligned_cols=42 Identities=12% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEcCC
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS-IVLTSHS 67 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~T-IllsSH~ 67 (247)
.+|++|++|||+. +++..+..+++++..+.++|++ +|++||.
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4799999999998 6666688899999998777888 8899984
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.19 E-value=0.00027 Score=69.45 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=51.2
Q ss_pred CCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCcEEEEEcCCHHHH--------Hhh----cCEEEEEeC
Q psy859 24 IGDPPLVFLDEP------TSGVDPISRHRLWAVLSQIQK--TGQSIVLTSHSMDEC--------EAL----CNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEP------TsGLDp~~r~~i~~~l~~l~~--~G~TIllsSH~l~e~--------e~l----~drV~ii~~ 83 (247)
.+.|+++++||| |+|||+..+..+++++.++.. .+.+++++||+++.+ ..+ +..|+++.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 467999999999 999999999999999999643 378889999997632 222 345899998
Q ss_pred CEEee
Q psy859 84 NELRK 88 (247)
Q Consensus 84 G~i~~ 88 (247)
+.++.
T Consensus 224 ~Dlv~ 228 (608)
T 3szr_A 224 PDLVD 228 (608)
T ss_dssp GGGSS
T ss_pred hhhcC
Confidence 87663
No 109
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.00076 Score=56.34 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHHHHHH-HHhCCcEEEEEcCCHHH--------HHhhcCEEEEEeC
Q psy859 24 IGDPPLVFLDEPTSGV--DPISRHRLWAVLSQ-IQKTGQSIVLTSHSMDE--------CEALCNRLTIMRG 83 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL--Dp~~r~~i~~~l~~-l~~~G~TIllsSH~l~e--------~e~l~drV~ii~~ 83 (247)
-.+|+++++|+|+..+ |+..++.+...+.+ +++.|.||++++|...+ ++..||.|+.|+.
T Consensus 126 ~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 126 DINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3689999999999988 66444444444444 45679999999999877 5788999999985
No 110
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.02 E-value=6.6e-05 Score=61.31 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC-HHHHHhhcCEEEEEeCCEE
Q psy859 37 SGVDPISRHRLWAVLSQIQKTGQSIVLTSHS-MDECEALCNRLTIMRGNEL 86 (247)
Q Consensus 37 sGLDp~~r~~i~~~l~~l~~~G~TIllsSH~-l~e~e~l~drV~ii~~G~i 86 (247)
.|+|+..++. |+.+..+...+.++|.+||. +++++++||+|+ ++|++
T Consensus 126 ~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~ 173 (189)
T 2bdt_A 126 EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF 173 (189)
T ss_dssp ---CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG
T ss_pred ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE
Confidence 3899999998 99998886668999999999 999999666655 54444
No 111
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.84 E-value=2e-05 Score=71.69 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=25.0
Q ss_pred hhHHHHHHhh---CCCCCEEEEeCCCCCCCHHHHHHHH
Q psy859 14 CILIQRQSWG---IGDPPLVFLDEPTSGVDPISRHRLW 48 (247)
Q Consensus 14 ~~~~~r~~~~---~~~P~lLiLDEPTsGLDp~~r~~i~ 48 (247)
-|.||||| + +.+|++|| |++||+.++..+.
T Consensus 201 LSgGqkQR-ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 201 VSIDRKHK-AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp EECCCSSC-CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred cCHHHHHH-HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 35577777 4 78999999 9999999998875
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.74 E-value=0.0021 Score=55.08 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=37.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
+..++++||| ||+.++..+++.+. +|.||+++||++++++.
T Consensus 105 l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 105 LATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred HhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 5568999999 99999999999875 58999999999999887
No 113
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.72 E-value=0.0013 Score=58.28 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=43.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH-HhhcCEEEEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC-EALCNRLTIMR 82 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~-e~l~drV~ii~ 82 (247)
.++|+++|+|||++ ||+.++..+++.+.+. ..+.++|++||+.+.+ ..+.+|+..++
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~-~~~~~~Il~t~~~~~l~~~l~sR~~~~~ 189 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPIIAPIKSQCLLIR 189 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSSCHHHHTTSEEEE
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh-cCCCEEEEEeCCHHHHHHHHHhhceEEe
Confidence 45899999999999 9999999999999876 3478999999987543 23444544443
No 114
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.51 E-value=0.0017 Score=60.82 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=46.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-CCcEEEEEcCCH-------------------HHH
Q psy859 24 IGDPPLVFLDEPTSGVDPISR------------HRLWAVLSQIQK-TGQSIVLTSHSM-------------------DEC 71 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r------------~~i~~~l~~l~~-~G~TIllsSH~l-------------------~e~ 71 (247)
..+|+++++|||++.+|+... ..+...|+++.+ .|.|||+++|.. ..+
T Consensus 271 ~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 271 ESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp HSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHH
T ss_pred hcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHH
Confidence 468999999999999997432 456777777754 499999999983 234
Q ss_pred HhhcCEEEEEeCCE
Q psy859 72 EALCNRLTIMRGNE 85 (247)
Q Consensus 72 e~l~drV~ii~~G~ 85 (247)
+..||.+++|++|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 77899999998763
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.45 E-value=0.00024 Score=64.81 Aligned_cols=56 Identities=9% Similarity=-0.017 Sum_probs=40.5
Q ss_pred CCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCHHHHHhhcCEEEEE
Q psy859 25 GDPPLVFLDE---PT------SGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIM 81 (247)
Q Consensus 25 ~~P~lLiLDE---PT------sGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~l~drV~ii 81 (247)
.+|++++||| |+ .++|+..|..+++.+.++. +.|.+|++.+|. ++++++|+++.+|
T Consensus 276 ~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 276 YPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp SCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 5899999999 65 5899999999999998874 458999999976 5777755444443
No 116
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.39 E-value=2.4e-05 Score=73.44 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=55.2
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHHHHHhhcCEEE-EEeCC-EEee
Q psy859 26 DP--PLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLT-IMRGN-ELRK 88 (247)
Q Consensus 26 ~P--~lLiLDEPTsGLDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~e~e~l~drV~-ii~~G-~i~~ 88 (247)
+| ++.++|||+.++|+..+.+.|+.+... ...|.|++ +|.+.+++.+|+++. +|.+| ++++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceee
Confidence 88 999999999999999999999999988 66688864 999999999999998 99999 8764
No 117
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.38 E-value=0.0025 Score=53.46 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=37.3
Q ss_pred CCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEE----EcCCH--HHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDE--PTSGVDPISRHRLWAVLSQIQKTGQSIVL----TSHSM--DECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDE--PTsGLDp~~r~~i~~~l~~l~~~G~TIll----sSH~l--~e~e~l~drV~ii~~G~i~ 87 (247)
.++|+++|||| |+..+|+...+.+.+++. ...++|+ +||+. ..++++++ +.+|+|+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~~~~~vd~i~~----~~~~~i~ 166 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGKPLALVEEIRN----RKDVKVF 166 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSSCCTTHHHHHT----TCCSEEE
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCCchHHHHHHee----cCCcEEE
Confidence 47899999999 899999976666666553 3445553 34876 44555444 4555554
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.87 E-value=0.004 Score=55.63 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHHhhCCCCC---EEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CcEEEEEcCCHH
Q psy859 17 IQRQSWGIGDPP---LVFLDEPTS-GVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMD 69 (247)
Q Consensus 17 ~~r~~~~~~~P~---lLiLDEPTs-GLDp~~r~~i~~~l~~l~~~-G~TIllsSH~l~ 69 (247)
+|||++ .+++ ++++||||+ |||+... ++++.+... +.++++++|++.
T Consensus 117 g~rqrv--~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 117 LNRRHI--IDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCTTC--CCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred Hhhhhh--hhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 445543 4444 999999998 5999874 556666443 889999999985
No 119
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.00025 Score=60.25 Aligned_cols=66 Identities=5% Similarity=-0.015 Sum_probs=50.2
Q ss_pred hHHHHHHhhC--C--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-------CCcEEEEEcCCHHHHHhhcCE
Q psy859 15 ILIQRQSWGI--G--------DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-------TGQSIVLTSHSMDECEALCNR 77 (247)
Q Consensus 15 ~~~~r~~~~~--~--------~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-------~G~TIllsSH~l~e~e~l~dr 77 (247)
+.+|+||..+ . +|++++|||||+++|......+.+.+.++.. .+.+.++++|+++++...+++
T Consensus 124 sggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ 203 (218)
T 1z6g_A 124 NGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKN 203 (218)
T ss_dssp HHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHH
Confidence 5677777766 3 5777778899999999888888887766532 467888999999998887766
Q ss_pred EEE
Q psy859 78 LTI 80 (247)
Q Consensus 78 V~i 80 (247)
++.
T Consensus 204 ii~ 206 (218)
T 1z6g_A 204 YLL 206 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 120
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.79 E-value=0.0045 Score=54.66 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=37.4
Q ss_pred hHHHHHHhhC--CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 15 ILIQRQSWGI--GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 15 ~~~~r~~~~~--~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
|.|||||+.+ ..+.+++||||+.||||.. .++++.+.+. .+||++.|..+.+
T Consensus 100 S~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 100 NIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp CTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGS
T ss_pred CcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccC
Confidence 4466666652 3456999999999999987 4556666555 8888888877643
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.42 E-value=0.022 Score=52.04 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCCCCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCcEEEEEcCCHHH----------------
Q psy859 24 IGDPPLVFLDEPTSGV----------DP---ISRHRLWAVLSQI----QKTGQSIVLTSHSMDE---------------- 70 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL----------Dp---~~r~~i~~~l~~l----~~~G~TIllsSH~l~e---------------- 70 (247)
-++|+++++|++++.+ |+ ...+.+.+.++++ ++.|.|||+++|....
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~ 216 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKA 216 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHH
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchH
Confidence 4679999999999988 43 2223455555554 4569999999997642
Q ss_pred HHhhcCEEEEEeCCEEe
Q psy859 71 CEALCNRLTIMRGNELR 87 (247)
Q Consensus 71 ~e~l~drV~ii~~G~i~ 87 (247)
++..||.++.++++++.
T Consensus 217 l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 217 LKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHCSEEEEEEEEEEE
T ss_pred hhhccceEEEEEEeeee
Confidence 56789999999887664
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.30 E-value=0.011 Score=54.45 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.+|+++++|||+ |+.. ++.+++.. ..|.+++.|+|..+ +...|||++.|.
T Consensus 208 ~~pd~illdE~~---d~e~---~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 208 EDPDVIFVGEMR---DLET---VETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp SCCSEEEESCCC---SHHH---HHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred hCcCEEEECCCC---CHHH---HHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 599999999999 7665 34444443 56999999999966 788888877664
No 123
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.91 E-value=0.037 Score=51.86 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=47.6
Q ss_pred CCCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHH-hCCcEEEEEcC---------C--HH--------HHHhhc
Q psy859 24 IGDPPLVFLDEPTSGVDP--------ISRHRLWAVLSQIQ-KTGQSIVLTSH---------S--MD--------ECEALC 75 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp--------~~r~~i~~~l~~l~-~~G~TIllsSH---------~--l~--------e~e~l~ 75 (247)
-++|+++++|+++...++ .....+.+.|+.++ +.|.+||+++| + +. .++..|
T Consensus 311 ~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~a 390 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDA 390 (454)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHC
T ss_pred HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhC
Confidence 478999999999887743 33456666777775 44999999999 2 21 578899
Q ss_pred CEEEEEeCCEE
Q psy859 76 NRLTIMRGNEL 86 (247)
Q Consensus 76 drV~ii~~G~i 86 (247)
|.|++|..++.
T Consensus 391 D~vi~l~r~~~ 401 (454)
T 2r6a_A 391 DIVAFLYRDDY 401 (454)
T ss_dssp SEEEEEEETTC
T ss_pred CEEEEEecccc
Confidence 99999987654
No 124
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.67 E-value=0.0073 Score=54.02 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=47.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCcEEEE-EcCCHHHHHhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ---KTGQSIVL-TSHSMDECEALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~---~~G~TIll-sSH~l~e~e~l~drV~ii~~G~i~ 87 (247)
..+|+++|+| |+|+|+.....++++..-+. ..+.++++ +||...+++++|+++..++.|.++
T Consensus 180 ~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 180 FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 4799999999 99999988777776655443 22445666 699999999999988767767665
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.41 E-value=0.0018 Score=55.24 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q psy859 24 IGDPPLVFLD----EPTSGVDPISRHRLWAVLSQIQKTG 58 (247)
Q Consensus 24 ~~~P~lLiLD----EPTsGLDp~~r~~i~~~l~~l~~~G 58 (247)
+.+|++++|| |||+|+|+..+..+++.+.++.+++
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 7899999999 9999999999999999998876543
No 126
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.00 E-value=0.00053 Score=56.68 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=37.3
Q ss_pred CCCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHH
Q psy859 24 IGDPPLVFLDEPTSG-------VDPISRHRLWAVLSQI-QKTGQSIVLTSHSMD 69 (247)
Q Consensus 24 ~~~P~lLiLDEPTsG-------LDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~ 69 (247)
+.+|+++++||||++ ||+.....+++.+.+. +++|+|++.++|.+.
T Consensus 109 i~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 109 ILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456666677899999 8999999999988775 567999999898753
No 127
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.22 E-value=0.018 Score=46.79 Aligned_cols=37 Identities=14% Similarity=-0.109 Sum_probs=29.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS 60 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~T 60 (247)
+.+|..+++||||+++|+.+...+++.|.++..+|.|
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 4678888999999999999999999999987665644
No 128
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.97 E-value=0.072 Score=53.67 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=50.4
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-cCCHHHHHhhcCEEEEE
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLT-SHSMDECEALCNRLTIM 81 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTs-GLDp~~r~~i~~~l~~l~~~G~TIlls-SH~l~e~e~l~drV~ii 81 (247)
|+.++.+++. +.+++++|+|||.. ++|......++..+...+....+|++| ||+.+.+..+++...++
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi 265 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEE
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcc
Confidence 4455655543 78999999999996 999887777777666655556788885 99998888887753333
No 129
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.04 E-value=0.034 Score=47.36 Aligned_cols=52 Identities=4% Similarity=0.010 Sum_probs=34.9
Q ss_pred HHHHHhh----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH-HhhcCEE
Q psy859 17 IQRQSWG----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC-EALCNRL 78 (247)
Q Consensus 17 ~~r~~~~----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~-e~l~drV 78 (247)
+|++++. +.+|+++|+|||....++. + .++ .+.+|+++||+...+ ..+++++
T Consensus 120 g~~~r~~~~~~~~~~~~lilDg~~~~~~~~----l----~~~--~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 120 VTHSRLPETTVVYPADVVLFEGILVFYSQE----I----RDM--FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp TTTEECSSCEEECCCSEEEEECTTTTTSHH----H----HTT--CSEEEEEECCHHHHHHHHHHHHT
T ss_pred cccCccCceEEecCCCEEEEeCccccccHH----H----HHh--cCeEEEEECCHHHHHHHHHHHHH
Confidence 4444443 5689999999998888764 2 222 389999999985444 4444434
No 130
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.93 E-value=0.29 Score=45.95 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH
Q psy859 24 IGDPP---LVFLDEPT-SGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70 (247)
Q Consensus 24 ~~~P~---lLiLDEPT-sGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e 70 (247)
+.+|+ +|++|||| .|||+... .+++.+. .+.+||++.|-.|.
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~Dl 179 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKADT 179 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTTS
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcccC
Confidence 67999 99999999 69999874 3444454 47788877776653
No 131
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.94 E-value=0.069 Score=48.03 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=25.0
Q ss_pred hhhhHHHHHHhh-----CCCCCEEEEeCCCCCCCH
Q psy859 12 PACILIQRQSWG-----IGDPPLVFLDEPTSGVDP 41 (247)
Q Consensus 12 ~~~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp 41 (247)
..-|.||+||+. +.+|++||||||+.++|+
T Consensus 175 ~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 175 PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 445667888875 689999999999999986
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.92 E-value=0.38 Score=44.94 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=36.0
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEcCC
Q psy859 26 DPPLVFLDEPTSGVDP-ISRHRLWAVLSQIQKTGQSIVLTSHS 67 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp-~~r~~i~~~l~~l~~~G~TIllsSH~ 67 (247)
+|++||+||+....+. ..+..++..+..+...|..||++||.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 8999999999776653 67888999998887789999999997
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.41 E-value=0.2 Score=44.24 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=40.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEcCCHHHHHhhc
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSHSMDECEALC 75 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~---~G~TIllsSH~l~e~e~l~ 75 (247)
.++|.++++||+... |+.....+...+..+.. .+.++|++||..+..+.+.
T Consensus 123 ~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 367899999999876 88888888888766554 5889999999987655543
No 134
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.97 E-value=0.17 Score=45.15 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=36.3
Q ss_pred hHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC
Q psy859 15 ILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 15 ~~~~r~~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d 76 (247)
+.+|+|+.. +++++++.|-.- |.. ..+++.+++++ .+.||+++||..-+++.+.|
T Consensus 143 s~g~~Q~~~---ad~ill~k~dl~-de~--~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 143 TIAQSQVGY---ADRILLTKTDVA-GEA--EKLHERLARIN-ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp HHHHHHHHT---CSEEEEECTTTC-SCT--HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSC
T ss_pred hHHHHHHHh---CCEEEEECcccC-CHH--HHHHHHHHHhC-CCCeEEEecccCCCHHHHhC
Confidence 667888874 455555433222 211 77888888874 68999999998766666443
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.29 E-value=0.94 Score=43.21 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=34.5
Q ss_pred CCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEcCCHHHHH
Q psy859 24 IGDPPLVFLDEP----------TSGVDPISRHRLWAVLSQIQ----KTGQSIVLTSHSMDECE 72 (247)
Q Consensus 24 ~~~P~lLiLDEP----------TsGLDp~~r~~i~~~l~~l~----~~G~TIllsSH~l~e~e 72 (247)
.+.|.+||+||+ +.|.|+...+.+.+++..+. ..+..||.+||..+.+.
T Consensus 106 ~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 106 AHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 468999999999 44778877777777777663 34788999999986543
No 136
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.79 E-value=0.69 Score=44.71 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH----HhCCcEEEEEcCCHH-------HHHhhcCEEEEE
Q psy859 25 GDPP-LVFLDEPTSGVDPISRHRLWAVLSQI----QKTGQSIVLTSHSMD-------ECEALCNRLTIM 81 (247)
Q Consensus 25 ~~P~-lLiLDEPTsGLDp~~r~~i~~~l~~l----~~~G~TIllsSH~l~-------e~e~l~drV~ii 81 (247)
..|. ++++||++.-++.. ...+.+.+.++ ++-|.+++++||..+ ...++..||.+-
T Consensus 295 ~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp CCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred cCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 3576 89999999888733 34455555554 234889999999987 456777777664
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.71 E-value=0.43 Score=42.29 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=21.7
Q ss_pred hHHHHHHhh------CCCCCEEEEeCCCCCCCHH
Q psy859 15 ILIQRQSWG------IGDPPLVFLDEPTSGVDPI 42 (247)
Q Consensus 15 ~~~~r~~~~------~~~P~lLiLDEPTsGLDp~ 42 (247)
|.||+++.. + +|+++|+|||++|+|+.
T Consensus 136 sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 136 FKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHTCEECSSCEEEES-SCSEEEEEESSTTCCCC
T ss_pred CCccccccccccceEc-CCCEEEEeCccccCCcc
Confidence 456666542 5 99999999999999985
No 138
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.59 E-value=0.52 Score=42.13 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSM 68 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l 68 (247)
+.+|+.++| +||+.+...+++.++.+.+ .|.|++++||..
T Consensus 218 ~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 218 PEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp TTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred cCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 678994444 3444444556666666654 399999999984
No 139
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.58 E-value=3.1 Score=36.10 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=29.9
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy859 25 GDPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQSIVLTSH 66 (247)
Q Consensus 25 ~~P~lLiLDEPTsG-LDp~~r~~i~~~l~~l~~~G~TIllsSH 66 (247)
..|+++|+||+..- .+.......|+.+......|..++.|+|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 37999999998642 3433334466666666677999999998
No 140
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=76.04 E-value=3.8 Score=36.08 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=26.5
Q ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q psy859 25 GDPPLVFLDEP-TSGVDPISRHRLWAVLSQI 54 (247)
Q Consensus 25 ~~P~lLiLDEP-TsGLDp~~r~~i~~~l~~l 54 (247)
.+++++|+|+| +.|+|......+..+...+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 68999999999 9999999888888887665
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.94 E-value=0.03 Score=54.00 Aligned_cols=42 Identities=12% Similarity=0.272 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EcCCHHHHHhhcC
Q psy859 34 EPTSGVDPISRHRLWAVLSQIQKTGQSIVL--TSHSMDECEALCN 76 (247)
Q Consensus 34 EPTsGLDp~~r~~i~~~l~~l~~~G~TIll--sSH~l~e~e~l~d 76 (247)
| ++|+||..++.+++.+.++...|.|+++ +||.+++++.+|.
T Consensus 415 E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 415 E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 6 9999999998888888887667899985 9999999998774
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=74.81 E-value=5.9 Score=33.76 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC----------CHHHHHhhcCEEEEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH----------SMDECEALCNRLTIMR 82 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH----------~l~e~e~l~drV~ii~ 82 (247)
.+++++++||--. +++. ..+.+..+...|.+|+++.| ...++..+||.|.-|+
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 5699999999964 5543 44455666566999999999 2467777999999876
No 143
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=74.51 E-value=4.8 Score=34.97 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy859 25 GDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLTSH 66 (247)
Q Consensus 25 ~~P~lLiLDEPTs-GLDp~~r~~i~~~l~~l~~~G~TIllsSH 66 (247)
.++.+|++||+-. ..++..+..+...+..+...|..++++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999854 34557888899998887667766666554
No 144
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=74.25 E-value=1.8 Score=36.68 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=43.0
Q ss_pred hCCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEEcCCH-HHHHhhcCEEEEEeC
Q psy859 23 GIGDPPLVFLDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSM-DECEALCNRLTIMRG 83 (247)
Q Consensus 23 ~~~~P~lLiLDEPTsG--LDp~~r~~i~~~l~~l~~~G~TIllsSH~l-~e~e~l~drV~ii~~ 83 (247)
.-++.+++||||.+.. ++-.....+.++|.. +-....||+|++.. ++.-.+||-|.=|..
T Consensus 117 ~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 117 ADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 3488999999999652 223334457776653 33478888888775 777789999999975
No 145
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=69.88 E-value=6.6 Score=35.07 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.3
Q ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEc--CCHHHH
Q psy859 24 IGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS--HSMDEC 71 (247)
Q Consensus 24 ~~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsS--H~l~e~ 71 (247)
..++-++++| +|+.|+|......++..+..... +..++++. ||+...
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 4677889999 99999999998888887766533 77777777 777543
No 146
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=69.64 E-value=23 Score=26.61 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=42.1
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHH
Q psy859 25 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72 (247)
Q Consensus 25 ~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e 72 (247)
.+++.++|| ...+.+|..+...+.++.+++++.|..+.++.-.-.-.+
T Consensus 47 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~ 95 (130)
T 4dgh_A 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRVSQ 95 (130)
T ss_dssp SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHHHHH
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 578999999 889999999999999999999999999999877655433
No 147
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=67.77 E-value=4.4 Score=36.46 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCCCCEEEEeCCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHH
Q psy859 24 IGDPPLVFLDEPTSGV---DPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGL---Dp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e 72 (247)
-..|.++++||--.=+ +|.....+.+.+++.++.|..++++||+++++.
T Consensus 260 ~~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 260 RRERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CCTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CCccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 3578999999997777 478888899999999999999999999998765
No 148
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.89 E-value=1.9 Score=37.21 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=25.0
Q ss_pred ChhHHHhHhhheeeeeCCeeeecCChHH
Q psy859 113 SMDECEALCNRLTIMVRGEMQCLGNITY 140 (247)
Q Consensus 113 ~~~~~~~lc~ri~i~~~G~~~~~Gt~~~ 140 (247)
+++++..+|||+++|.+|+++..|++++
T Consensus 212 d~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 212 RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 4567778999999999999999999988
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.66 E-value=2.8 Score=36.37 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=35.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH-HHHhhcCEEEEE
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD-ECEALCNRLTIM 81 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~-e~e~l~drV~ii 81 (247)
.++.++++|| ...+++..+..+.+.+.+... ...+++++++.+ ....+.+|+..+
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred CCceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhCcchhhccCceE
Confidence 4667999999 788999998888888877543 334445554443 334444554444
No 150
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=66.01 E-value=0.89 Score=41.29 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=42.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEeCCE
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~~G~ 85 (247)
..+|+.+++||+.. ..+++++..+.....|++.++|..+ ++..++|+..+..|.
T Consensus 250 ~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 250 RMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp TSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred hcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 35899999999986 3567777777544568899999965 788899988887653
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.56 E-value=0.73 Score=40.20 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCcEEEEEcCCHHHHHh
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQI---QKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l---~~~G~TIllsSH~l~e~e~ 73 (247)
+.|.++++||+....+......+..++..+ ...+.++|++||..+..+.
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 458999999997654221122333333333 2336789999998865444
No 152
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=64.87 E-value=0.2 Score=47.75 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=42.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHHHH--HhhcCEEEEEeCCEEe
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC--EALCNRLTIMRGNELR 87 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~e~--e~l~drV~ii~~G~i~ 87 (247)
..| ++||+ ||++.+||. +..+.. ++.+ -++++.+.||.|+++ .+++++++.+..|.++
T Consensus 31 t~d-dvlLm-p~~s~~~p~-~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii 91 (514)
T 1jcn_A 31 TYN-DFLIL-PGFIDFIAD-EVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFI 91 (514)
T ss_dssp CGG-GEEEC-CCCCCSCGG-GCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEE
T ss_pred ccC-cEEec-cCccCCCcc-eeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEE
Confidence 345 99999 999999994 433322 2322 367888999999998 7878887777766665
No 153
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=64.69 E-value=3.1 Score=39.22 Aligned_cols=44 Identities=5% Similarity=0.044 Sum_probs=38.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEcCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSHS 67 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~-l~~~G~TIllsSH~ 67 (247)
..+++++++|+|+..|.+.....+.+.|++ +...|.+|+..|.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 378999999999999999999999999986 77789999988864
No 154
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=64.46 E-value=2 Score=37.76 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=25.6
Q ss_pred ChhHHHhHhhheeeeeCCeeeecCChHHH
Q psy859 113 SMDECEALCNRLTIMVRGEMQCLGNITYL 141 (247)
Q Consensus 113 ~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L 141 (247)
+++++..+|||+++|.+|++++.|+++++
T Consensus 222 d~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 222 FIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp CGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred CHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 45677779999999999999999999877
No 155
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=64.38 E-value=16 Score=33.08 Aligned_cols=63 Identities=5% Similarity=0.058 Sum_probs=40.5
Q ss_pred CCCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH----HhCCcEEEEEcCCHHH----------------
Q psy859 24 IGDPPLVFLDEPTSGVDPI-------------SRHRLWAVLSQI----QKTGQSIVLTSHSMDE---------------- 70 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~-------------~r~~i~~~l~~l----~~~G~TIllsSH~l~e---------------- 70 (247)
-++++++++|.++.-.... ..+.+.+.++++ ++.|.+||+++|....
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~ 218 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA 218 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSH
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcc
Confidence 4789999999998765311 112344555554 4569999999997543
Q ss_pred HHhhcCEEEEEeCCEE
Q psy859 71 CEALCNRLTIMRGNEL 86 (247)
Q Consensus 71 ~e~l~drV~ii~~G~i 86 (247)
++..+|-++.+++.+.
T Consensus 219 l~~~advrl~l~r~~~ 234 (356)
T 1u94_A 219 LKFYASVRLDIRRIGA 234 (356)
T ss_dssp HHHHCSEEEEEEEEEE
T ss_pred eeeeccEEEEEEEeee
Confidence 4557888888876554
No 156
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=63.84 E-value=1.9 Score=40.31 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=37.7
Q ss_pred hhHHHHHHhh-----CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEE-EcCCHHHHHhhcC
Q psy859 14 CILIQRQSWG-----IGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVL-TSHSMDECEALCN 76 (247)
Q Consensus 14 ~~~~~r~~~~-----~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~-l~~~G~TIll-sSH~l~e~e~l~d 76 (247)
.+.+++++.. ...|.++++ +++|+..+ ...+.+.+ +.+.|.++++ |+|.-+.++.+++
T Consensus 253 ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 253 LETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 4556666554 479999999 99999877 44444444 4455776665 6666666666443
No 157
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=59.91 E-value=43 Score=25.32 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH
Q psy859 26 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70 (247)
Q Consensus 26 ~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e 70 (247)
+++.++|| .-.+.+|..+...+.++.+++++.|..+.++.-.-.-
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 108 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQV 108 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHH
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 68899999 7899999999999999999999999999998776543
No 158
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=58.54 E-value=32 Score=26.04 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=41.2
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 25 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 25 ~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
.+++.+++| ...+.+|..+...+.++.+++++.|..+.++.-.-.-.
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~ 97 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRLY 97 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 578999999 78999999999999999999988899999987765443
No 159
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=57.85 E-value=19 Score=32.19 Aligned_cols=60 Identities=5% Similarity=-0.083 Sum_probs=40.6
Q ss_pred HhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEcCCH---------HHHHhhcCEEEEEeCCEEe
Q psy859 21 SWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSM---------DECEALCNRLTIMRGNELR 87 (247)
Q Consensus 21 ~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~-~~G~TIllsSH~l---------~e~e~l~drV~ii~~G~i~ 87 (247)
+....++++++||.++ | +.+.+.++.+. ..|.|+++.||.- +.+....-.|.++..|+-+
T Consensus 238 ral~~de~llvLDa~t-~------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 238 RVTKPNLVIFVGDALA-G------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHCCSEEEEEEEGGG-T------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHhcCCCCEEEEecHH-H------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3445677778888444 4 34555556654 4599999999943 3445566789999999864
No 160
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=57.43 E-value=7.3 Score=31.07 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=28.4
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhC-CcEEEEEcCCHHHHHh
Q psy859 25 GDPPLVFLDEPTS-GVDPISRHRLW-AVLSQIQKT-GQSIVLTSHSMDECEA 73 (247)
Q Consensus 25 ~~P~lLiLDEPTs-GLDp~~r~~i~-~~l~~l~~~-G~TIllsSH~l~e~e~ 73 (247)
.++++|++||+-. .+++..+..+. .++...... ..+|+.|.+.+++...
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 3578999999932 34444444344 466554334 4566666667777765
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=57.33 E-value=9.1 Score=30.13 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
++|.++++||.-. +++.....+...+.+. ..+..+|++|+...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 4678999999765 7887777776666432 23677888887754
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=57.26 E-value=5.6 Score=31.93 Aligned_cols=44 Identities=7% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcE-EEEEcCC
Q psy859 24 IGDPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQS-IVLTSHS 67 (247)
Q Consensus 24 ~~~P~lLiLDEPTsG-LDp~~r~~i~~~l~~l~~~G~T-IllsSH~ 67 (247)
..++.++++||.-.- -+......++..+......+.. +|++|+.
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 357899999996442 2233367788888877665654 7776663
No 163
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=57.03 E-value=12 Score=27.24 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=38.4
Q ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy859 24 IGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66 (247)
Q Consensus 24 ~~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH 66 (247)
..+|+.+++| ....-+|..+...+.++.+++++.|.++.++.-
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGM 84 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4578999999 789999999999999999999999999998763
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=55.40 E-value=6.1 Score=34.86 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCCEEEEeCCCCCCCH--------HHH----HHHHHHHHHHH-hCCcEEEEEcCCHHHH
Q psy859 25 GDPPLVFLDEPTSGVDP--------ISR----HRLWAVLSQIQ-KTGQSIVLTSHSMDEC 71 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp--------~~r----~~i~~~l~~l~-~~G~TIllsSH~l~e~ 71 (247)
++|+++++|+.++-... ..+ ..+...|..+. +.|.+||+++|.....
T Consensus 202 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 202 PSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp TTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred cCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 78999999999875432 122 23333444443 4499999999976543
No 165
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=53.65 E-value=7.4 Score=31.24 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH--HhhcCEEEEEeC
Q psy859 37 SGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC--EALCNRLTIMRG 83 (247)
Q Consensus 37 sGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~--e~l~drV~ii~~ 83 (247)
+.++|..++.+++.+... .|.++++.+|.+.+. ...||.+++++.
T Consensus 86 ~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 86 NLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp HHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred hccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 345666666666655432 356899999999887 778999999974
No 166
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=53.26 E-value=6.3 Score=33.87 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=24.5
Q ss_pred ChhHHHhHhhheeeeeCCeeeecCChHHH
Q psy859 113 SMDECEALCNRLTIMVRGEMQCLGNITYL 141 (247)
Q Consensus 113 ~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L 141 (247)
+++++..+|||+++|.+|+ ++.|+++++
T Consensus 188 d~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 188 QPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 4577778999999999999 999998877
No 167
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=53.20 E-value=5.1 Score=35.31 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHH-hCCcEEEEEcCCHHHHHh
Q psy859 25 GDPPLVFLDEPT-SGVDPISRHRLWA-VLSQIQ-KTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 25 ~~P~lLiLDEPT-sGLDp~~r~~i~~-~l~~l~-~~G~TIllsSH~l~e~e~ 73 (247)
.++++||+||.- ..+++..+..+.. ++.... .++.+|+.|...+++...
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 478999999983 3445555554444 665432 334455555556676655
No 168
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=52.15 E-value=31 Score=25.65 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH
Q psy859 24 IGDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70 (247)
Q Consensus 24 ~~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e 70 (247)
..+++.+++| ...+.+|..+...+.++.+++++ |..+.++.-.-.-
T Consensus 43 ~~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~v 89 (118)
T 3ny7_A 43 LEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQP 89 (118)
T ss_dssp CTTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHHH
T ss_pred cCCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHHH
Confidence 3678999999 78899999999999999999988 9999998776543
No 169
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=51.61 E-value=23 Score=30.74 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=41.6
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC----------HHHHHhhcCEEEEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS----------MDECEALCNRLTIMR 82 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~----------l~e~e~l~drV~ii~ 82 (247)
.+.+++++||----.| +++++..+...|+.|+++.++ ..+.-.+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999866543 666666666689999999998 566677899998876
No 170
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=50.16 E-value=9 Score=34.21 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=29.8
Q ss_pred CCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHH-hCCcEEEEEcCCHHHHHh
Q psy859 25 GDPPLVFLDEPTSGVDPI--------S----RHRLWAVLSQIQ-KTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~--------~----r~~i~~~l~~l~-~~G~TIllsSH~l~e~e~ 73 (247)
++++++++|+.++-..+. . ...+...|..+. +.|.+||+++|.....+.
T Consensus 218 ~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~ 279 (343)
T 1v5w_A 218 GIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGA 279 (343)
T ss_dssp SSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC------
T ss_pred CCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCC
Confidence 789999999998765432 1 233444444443 459999999998876553
No 171
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=48.65 E-value=5 Score=33.99 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=21.2
Q ss_pred hhHHHhHhhheeeeeCCeeeecCChHHHH
Q psy859 114 MDECEALCNRLTIMVRGEMQCLGNITYLK 142 (247)
Q Consensus 114 ~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~ 142 (247)
++.+ .+|||+++|.+|+++..|+++++.
T Consensus 206 ~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 206 INVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 4433 589999999999999999887764
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=48.13 E-value=16 Score=33.63 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh-CCcEEEEEcCCH-------------H------HHHh
Q psy859 24 IGDPPLVFLDEPTSGVDP----------ISRHRLWAVLSQIQK-TGQSIVLTSHSM-------------D------ECEA 73 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp----------~~r~~i~~~l~~l~~-~G~TIllsSH~l-------------~------e~e~ 73 (247)
-++++++++|..+.-..+ .....+...|+.+++ .|.+||+++|-- + .++.
T Consensus 308 ~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~ 387 (444)
T 2q6t_A 308 QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQ 387 (444)
T ss_dssp HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGG
T ss_pred HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHH
Confidence 368999999988643322 122345556666644 499999999832 1 3678
Q ss_pred hcCEEEEEeC
Q psy859 74 LCNRLTIMRG 83 (247)
Q Consensus 74 l~drV~ii~~ 83 (247)
.||.|+++..
T Consensus 388 ~aD~vi~L~r 397 (444)
T 2q6t_A 388 DADLVMFIYR 397 (444)
T ss_dssp GCSEEEEEEE
T ss_pred hCCEEEEEec
Confidence 8999999974
No 173
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=46.25 E-value=32 Score=28.22 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH----------HHHHhhcCEEEEEe
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM----------DECEALCNRLTIMR 82 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l----------~e~e~l~drV~ii~ 82 (247)
+.+++++||--. +|+.. .+.++.+...|..||++.++. .+...+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 66443 445666666699999998744 77788999998775
No 174
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=45.86 E-value=48 Score=30.07 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=40.6
Q ss_pred CCCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH----HhCCcEEEEEcCCHHH----------------
Q psy859 24 IGDPPLVFLDEPTSGVD---P----------ISRHRLWAVLSQI----QKTGQSIVLTSHSMDE---------------- 70 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLD---p----------~~r~~i~~~l~~l----~~~G~TIllsSH~l~e---------------- 70 (247)
-++++++++|..++=.- . ...+.+.+.++++ ++.+.+||+++|....
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~a 229 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRA 229 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHH
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcch
Confidence 47899999999876431 0 1224466666665 3458999999987543
Q ss_pred HHhhcCEEEEEeCCE
Q psy859 71 CEALCNRLTIMRGNE 85 (247)
Q Consensus 71 ~e~l~drV~ii~~G~ 85 (247)
++..||-++.++++.
T Consensus 230 l~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 230 LKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHCSEEEEEEEES
T ss_pred hhheeeEEEEEEecc
Confidence 355688888887654
No 175
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=45.44 E-value=9.9 Score=32.40 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=23.2
Q ss_pred ChhHHHhH-hhheeeeeCCeeeecCChHH
Q psy859 113 SMDECEAL-CNRLTIMVRGEMQCLGNITY 140 (247)
Q Consensus 113 ~~~~~~~l-c~ri~i~~~G~~~~~Gt~~~ 140 (247)
+++++..+ |||+.+|.+|++++.|+++.
T Consensus 202 d~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 202 YQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp SSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 34566667 59999999999999999873
No 176
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=41.76 E-value=18 Score=34.42 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
.-.+++|||. +-+|....+.+.++++++ |.=+|+++-. .++..+|.++.+-
T Consensus 414 ~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 414 PCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE--NISPERGTTYKLV 464 (483)
T ss_dssp CCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--SCCCSSSEEEECC
T ss_pred ceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--hhhhccCceEEEE
Confidence 3468999999 999999999999999865 8877787766 6666677776664
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=41.71 E-value=24 Score=34.55 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=35.2
Q ss_pred HHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHH
Q psy859 19 RQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70 (247)
Q Consensus 19 r~~~~~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e 70 (247)
...+...+.-++++| |+.|+++..+. +|..+ ...|.+++++.|.+|.
T Consensus 92 ~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~---~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 92 RGALEAADAALVAVS-AEAGVQVGTER-AWTVA---ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHH---HHTTCCEEEEEECGGG
T ss_pred HHHHhhcCcEEEEEc-CCcccchhHHH-HHHHH---HHccCCEEEEecCCch
Confidence 344447899999999 99999998773 33333 3458889999998875
No 178
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=39.83 E-value=24 Score=33.07 Aligned_cols=48 Identities=6% Similarity=0.124 Sum_probs=35.3
Q ss_pred CCCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 24 IGDPPLVFLDEPT-SG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 24 ~~~P~lLiLDEPT-sG--LDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
..+++++|+|+|. .+ .|+....++..+.+........+++.++.-.++
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 4689999999997 45 899888888887766544456677777654433
No 179
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=39.31 E-value=66 Score=23.92 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=38.6
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 25 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 25 ~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
.+++.+++| .-.+.+|..+...+..+.++++++|..+.++.-...
T Consensus 50 ~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~~~ 95 (125)
T 2ka5_A 50 KGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEK 95 (125)
T ss_dssp TTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred CCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467889999 889999999999999999999888999988865543
No 180
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=39.10 E-value=10 Score=31.70 Aligned_cols=24 Identities=17% Similarity=0.064 Sum_probs=20.0
Q ss_pred ChhHHHhHhhheeeeeCCeeeecCC
Q psy859 113 SMDECEALCNRLTIMVRGEMQCLGN 137 (247)
Q Consensus 113 ~~~~~~~lc~ri~i~~~G~~~~~Gt 137 (247)
+++.. .+|||+++|.+|++++.|+
T Consensus 199 d~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 199 ERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred CHHHH-HhCCEEEEEECCEEEEEee
Confidence 35555 6899999999999998876
No 181
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=38.88 E-value=48 Score=28.15 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC----------CHHHHHhhcCEEEEEe
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH----------SMDECEALCNRLTIMR 82 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH----------~l~e~e~l~drV~ii~ 82 (247)
+.+++++||--. +|+.. .+.+..++..|+.|+++.+ ...+.-.+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999866 55432 3556666667999999999 6677888999999887
No 182
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=38.72 E-value=20 Score=26.96 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=38.5
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 26 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 26 ~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
+++.++|| .-.+.+|..+...+.++.+++++.|..++++.-.-.
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 91 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQD 91 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57899999 778899999999999999999889999999876544
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=38.42 E-value=1.6 Score=35.65 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=26.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcCEEEEEe
Q psy859 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82 (247)
Q Consensus 29 lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~drV~ii~ 82 (247)
+++|||+|+++|......+.+.|...... +..+|. . ..+|+|++++
T Consensus 127 ~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~---~-~~~D~iivnd 172 (198)
T 1lvg_A 127 LDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE---P-GLFDLVIIND 172 (198)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS---T-TTCSEEEECS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc---c-CCceEEEECC
Confidence 33344556777777777777777665332 122341 1 5688877665
No 184
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=37.47 E-value=90 Score=28.90 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=40.4
Q ss_pred hCCCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHH-hCCcEEEEEcCCHH----------------------HHH
Q psy859 23 GIGDPPLVFLDEPTS---G---VDP-ISRHRLWAVLSQIQ-KTGQSIVLTSHSMD----------------------ECE 72 (247)
Q Consensus 23 ~~~~P~lLiLDEPTs---G---LDp-~~r~~i~~~l~~l~-~~G~TIllsSH~l~----------------------e~e 72 (247)
.-++|+++++|--+. + -+. .....+...|+.++ +.|.+|++++|.-. .++
T Consensus 351 ~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie 430 (503)
T 1q57_A 351 SGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALR 430 (503)
T ss_dssp HTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHH
T ss_pred HhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhh
Confidence 357899999995432 1 111 23344555666664 44999999988542 367
Q ss_pred hhcCEEEEEeC
Q psy859 73 ALCNRLTIMRG 83 (247)
Q Consensus 73 ~l~drV~ii~~ 83 (247)
..||-|++|..
T Consensus 431 ~~aD~vi~l~r 441 (503)
T 1q57_A 431 QLSDTIIALER 441 (503)
T ss_dssp HHCSEEEEEEE
T ss_pred ecCcEEEEEEe
Confidence 78999999974
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=36.15 E-value=79 Score=27.51 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCCCC--EEEEeCCCC----C--CCH-HHHHHHHHHHHHHH-hCCcEEEEEcCCH-------------------HHHHhh
Q psy859 24 IGDPP--LVFLDEPTS----G--VDP-ISRHRLWAVLSQIQ-KTGQSIVLTSHSM-------------------DECEAL 74 (247)
Q Consensus 24 ~~~P~--lLiLDEPTs----G--LDp-~~r~~i~~~l~~l~-~~G~TIllsSH~l-------------------~e~e~l 74 (247)
-++++ ++++|--+. + -+. .....+...|+.++ +.|.+|++++|.- ..++..
T Consensus 177 ~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~ 256 (315)
T 3bh0_A 177 KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQD 256 (315)
T ss_dssp TSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHH
T ss_pred hcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhh
Confidence 35677 999995421 1 111 23345555666664 4499999999942 137889
Q ss_pred cCEEEEEeC
Q psy859 75 CNRLTIMRG 83 (247)
Q Consensus 75 ~drV~ii~~ 83 (247)
||-|+++..
T Consensus 257 aD~vi~L~r 265 (315)
T 3bh0_A 257 ADIIEFLYR 265 (315)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEec
Confidence 999999974
No 186
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=36.02 E-value=1.1e+02 Score=21.34 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=37.7
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 26 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 26 ~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
.++.+++| .-...+|..+...+..+.+.+++.|..+.++.-.-.
T Consensus 43 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 87 (110)
T 1sbo_A 43 SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKES 87 (110)
T ss_dssp SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34788999 788899999999999999999888999998776543
No 187
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=35.06 E-value=37 Score=27.94 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 36 TSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 36 TsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
..||+|.+...+.+++...+++|..+.+++=+-+..++
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~sgyRs~~~Q 67 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQ 67 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEEEECCHHHH
Confidence 45899999999999999998899988887776655554
No 188
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=34.42 E-value=75 Score=27.72 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC
Q psy859 26 DPPLVFLDEPTS--------------GVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 26 ~P~lLiLDEPTs--------------GLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d 76 (247)
.-.++.+|-|.. |.+..-..++.+.+..+.++|.-+++|-++-+++..+-.
T Consensus 187 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d~~~i~~ly~ 251 (284)
T 2dpm_A 187 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEELYK 251 (284)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEESCHHHHHHTT
T ss_pred CCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCCHHHHHHHc
Confidence 447899999864 346667788999999988788999999999999887654
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.37 E-value=75 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=26.7
Q ss_pred CCCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh----CCcEEEEEcCCHH
Q psy859 24 IGDPPLVFLDEPTSGVDP----------ISRHRLWAVLSQIQK----TGQSIVLTSHSMD 69 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp----------~~r~~i~~~l~~l~~----~G~TIllsSH~l~ 69 (247)
..+|.+|++||+.+.++. .....+...+..... .+..||.+|+..+
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 468999999999766543 222334444433311 2356677888753
No 190
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=32.26 E-value=2.1e+02 Score=25.84 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=39.1
Q ss_pred CCCCCEEEEeCCCCCCC-H------------HHHHHHHH---HHHHHH-hCCcEEEEEcCCH----------------HH
Q psy859 24 IGDPPLVFLDEPTSGVD-P------------ISRHRLWA---VLSQIQ-KTGQSIVLTSHSM----------------DE 70 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLD-p------------~~r~~i~~---~l~~l~-~~G~TIllsSH~l----------------~e 70 (247)
-.+|+++++|+-++=.. . ...+.+.+ .|..+. +.|.|||++.|.. .-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~ 216 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLA 216 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHH
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcch
Confidence 47899999998655442 1 11233333 344443 4599999999982 22
Q ss_pred HHhhcCEEEEEeC
Q psy859 71 CEALCNRLTIMRG 83 (247)
Q Consensus 71 ~e~l~drV~ii~~ 83 (247)
++-.+|-++.+.+
T Consensus 217 l~h~~~~rl~l~k 229 (356)
T 3hr8_A 217 LKFYATMRMEVRR 229 (356)
T ss_dssp HHHHCSEEEEEEE
T ss_pred hhhhCcEEEEEEe
Confidence 5678888888875
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=31.68 E-value=36 Score=26.30 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
.++.++++||. ..+++.....+...+... ..+..+|++|+..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 67899999995 446777777777777553 3356667777655
No 192
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.03 E-value=28 Score=30.22 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCCEEEEeCCCCCC--------CHHHH----HHHHHHHHHH-HhCCcEEEEEcCCHH----------------HHHhhc
Q psy859 25 GDPPLVFLDEPTSGV--------DPISR----HRLWAVLSQI-QKTGQSIVLTSHSMD----------------ECEALC 75 (247)
Q Consensus 25 ~~P~lLiLDEPTsGL--------Dp~~r----~~i~~~l~~l-~~~G~TIllsSH~l~----------------e~e~l~ 75 (247)
++++++++|.-+.-. +...+ ..+...|..+ ++.|.+||+++|... .++..+
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~ 282 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAA 282 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHC
T ss_pred cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcC
Confidence 789999999876532 12222 2333344444 356999999988432 266678
Q ss_pred CEEEEEeC
Q psy859 76 NRLTIMRG 83 (247)
Q Consensus 76 drV~ii~~ 83 (247)
|.++.+.+
T Consensus 283 d~~i~l~~ 290 (322)
T 2i1q_A 283 TFRFFVRK 290 (322)
T ss_dssp SEEEEEEE
T ss_pred cEEEEEEe
Confidence 88888874
No 193
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.76 E-value=71 Score=22.68 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 26 DPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 26 ~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
+++.+++| .-...+|..+...+..+.+.++++|..+.++.-.-.
T Consensus 42 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 86 (116)
T 1th8_B 42 AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPA 86 (116)
T ss_dssp CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHH
T ss_pred CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCCHH
Confidence 47889999 778899999999999999999888999988876543
No 194
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=29.27 E-value=82 Score=27.33 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=40.2
Q ss_pred CCCEEEEeCCCCC--------------CCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhhcC
Q psy859 26 DPPLVFLDEPTSG--------------VDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76 (247)
Q Consensus 26 ~P~lLiLDEPTsG--------------LDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l~d 76 (247)
.-+++.+|-|..+ .+.....++.+.+..+.++|.-+++|-++-+++..+-.
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~~~~~~lS~~d~~~i~~ly~ 238 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQ 238 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHHHTT
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCHHHHHHhc
Confidence 3479999999743 34455677999999888888899999999988877654
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=29.00 E-value=1.1e+02 Score=22.99 Aligned_cols=42 Identities=0% Similarity=0.113 Sum_probs=28.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH 66 (247)
..+..++++||.- .+++..+..+.+.+.+....+..+|.+|+
T Consensus 73 ~a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 73 KAEGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp HTTTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred hCCCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4567899999975 56888888888888764333444555443
No 196
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=28.58 E-value=55 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 37 SGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 37 sGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
+||||.....+.+++...++.|..+.+++=+-+..++
T Consensus 31 ~gLdp~~a~al~~m~~aA~~~Gi~l~v~sGyRS~e~Q 67 (179)
T 1xp2_A 31 GGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQ 67 (179)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeEEEEEeecCHHHH
Confidence 6999999999999999998889888777766654443
No 197
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.57 E-value=1.3e+02 Score=20.45 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~ 67 (247)
-..|+++++|--..+.|-. .+.+.+++....-..|++|++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHCTTCCEEEEESCG
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccCCCCeEEEEECCc
Confidence 4689999999877676642 3444444432223455566654
No 198
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=27.83 E-value=24 Score=32.22 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=29.8
Q ss_pred CChhHHHhHhhheeeeeCCeeeecCChHHHHHh
Q psy859 112 SSMDECEALCNRLTIMVRGEMQCLGNITYLKQR 144 (247)
Q Consensus 112 ~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~ 144 (247)
-+++++..+|||+++|.+|+++..|+++++.+.
T Consensus 197 Hd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 197 HDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp CCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 467899999999999999999999999998654
No 199
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=26.14 E-value=27 Score=32.20 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=29.4
Q ss_pred CChhHHHhHhhheeeeeCCeeeecCChHHHHHh
Q psy859 112 SSMDECEALCNRLTIMVRGEMQCLGNITYLKQR 144 (247)
Q Consensus 112 ~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L~~~ 144 (247)
-+++++..+|||+++|.+|+++..|+++++...
T Consensus 192 Hd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp SCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 367899999999999999999999999998653
No 200
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=26.00 E-value=1.3e+02 Score=21.99 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=39.2
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEcCCHH
Q psy859 25 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMD 69 (247)
Q Consensus 25 ~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~-~G~TIllsSH~l~ 69 (247)
.+++.+++| .-..-+|..+...+..+.+++++ .|..+.++.-.-.
T Consensus 46 ~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~ 92 (121)
T 3t6o_A 46 AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPY 92 (121)
T ss_dssp SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCCHH
T ss_pred cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 468899999 78899999999999999999988 8999998876544
No 201
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.38 E-value=50 Score=26.52 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=36.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH----------HHHhhcCEEEEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD----------ECEALCNRLTIMR 82 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~----------e~e~l~drV~ii~ 82 (247)
.+++++++||--. +++ .+.+.+..+...|..|+++.+..+ ..-.+||.|.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999743 443 245566666666999999888443 2333588887765
No 202
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=25.16 E-value=33 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQI 54 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l 54 (247)
.+|.+.++| |+++|+.+..++++.|.+.
T Consensus 138 ~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 138 EKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 467889999 9999999999999988764
No 203
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=24.47 E-value=87 Score=24.13 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCCCEEEE-eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHhh
Q psy859 24 IGDPPLVFL-DEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL 74 (247)
Q Consensus 24 ~~~P~lLiL-DEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~l 74 (247)
.+--+.|++ |+-...=||..+..+.+++....+.|..|.+.|..-.+-+++
T Consensus 52 ~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~~~~G~qL 103 (124)
T 1x52_A 52 AMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQL 103 (124)
T ss_dssp TTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred cCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCCCccHHHH
Confidence 344454444 443333478888899995555566788888877776666663
No 204
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=24.17 E-value=92 Score=27.68 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHHHh
Q psy859 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73 (247)
Q Consensus 26 ~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~e~ 73 (247)
.++++++|-|..|++....+. ++ .+..++++|.+.....+
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~~-------l~-~~g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEKM-------VQ-AYPRILYISCNPETLCK 334 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHHH-------HT-TSSEEEEEESCHHHHHH
T ss_pred CCCEEEECcCccccHHHHHHH-------Hh-CCCEEEEEECCHHHHHH
Confidence 579999999999998654332 22 56778888888765443
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=23.53 E-value=55 Score=26.26 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=41.7
Q ss_pred HhhCCCCCEEEEeCCCC----CCCHHHHHHHHHHHHHH-HhCCcEEEEEcCCHH----------HHHhhcCEEEEEeC
Q psy859 21 SWGIGDPPLVFLDEPTS----GVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMD----------ECEALCNRLTIMRG 83 (247)
Q Consensus 21 ~~~~~~P~lLiLDEPTs----GLDp~~r~~i~~~l~~l-~~~G~TIllsSH~l~----------e~e~l~drV~ii~~ 83 (247)
.....+|+++++|.-+. .-|.....++...+..+ ++.|.++++++|.-. ..+.+||-|+.+..
T Consensus 130 ~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~ 207 (251)
T 2zts_A 130 VVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEE
Confidence 33467999999995421 11444555566666665 455999999998642 24678999988863
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=23.23 E-value=96 Score=25.27 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=26.3
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy859 24 IGDPPLVFLDEPTS-GVDPISRHRLWAVLSQIQKTGQSIVLT 64 (247)
Q Consensus 24 ~~~P~lLiLDEPTs-GLDp~~r~~i~~~l~~l~~~G~TIlls 64 (247)
+.+.+++++||.-. ++|........+.+.....+-.++++|
T Consensus 174 l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 174 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp CTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred hcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 78999999999965 687766644444443332333456554
No 207
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=22.69 E-value=1.6e+02 Score=21.17 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE-EcCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL-TSHS 67 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIll-sSH~ 67 (247)
-..|+++|+|--..+.|-. .+.+.+++. ..+..||+ |++.
T Consensus 47 ~~~~dlvllD~~lp~~~g~---~l~~~l~~~-~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDGI---ELVDNILKL-YPDCSVIFMSGYS 87 (141)
T ss_dssp TSCCSEEEEESCCSSSCHH---HHHHHHHHH-CTTCEEEEECCST
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhh-CCCCcEEEEeCCC
Confidence 4679999999877776632 344444442 23444544 4443
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=22.64 E-value=90 Score=23.46 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHHHH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDEC 71 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~e~ 71 (247)
.+..+|++||.- .+++..+..+.+.+.....+.+.|..|+.++++.
T Consensus 75 a~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 75 AQGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp HTTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHH
T ss_pred cCCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHH
Confidence 356799999984 6788888888888844322334555566666654
No 209
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=22.63 E-value=1.7e+02 Score=20.47 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEcCCH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSM 68 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~-TIllsSH~l 68 (247)
..|+++|+|-...+.|.. .+.+.+++. ..+. .|++|++.-
T Consensus 45 ~~~dlii~d~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~~~~ 85 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNGI---QVLETLRKR-QYSGIIIIVSAKND 85 (134)
T ss_dssp HCCSEEEEETTCSSSCHH---HHHHHHHHT-TCCSEEEEEECC--
T ss_pred cCCCEEEEecCCCCCChH---HHHHHHHhc-CCCCeEEEEeCCCC
Confidence 489999999887776642 333334332 1234 444555543
No 210
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=22.57 E-value=1.2e+02 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcC-CHHH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH-SMDE 70 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH-~l~e 70 (247)
.+-..+++| +|.++.....+.+.++++.......|+.|| ..|-
T Consensus 33 ~~~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH 76 (233)
T 3q6v_A 33 GTDGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNYHTDR 76 (233)
T ss_dssp CSSCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHH
T ss_pred eCCeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhh
Confidence 345677888 566777777888888776444566666666 4443
No 211
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=21.63 E-value=1.8e+02 Score=20.17 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
-..|+++|+|--..+.|-. .+.+.+++....-..|++|+|.-
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~~ 86 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGV---ELLRNLGDLKINIPSIVITGHGD 86 (126)
T ss_dssp GCCSEEEEEECCSTTSCHH---HHHHHHHHTTCCCCEEEEECTTC
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHhcCCCCCEEEEECCCC
Confidence 5689999999766666632 23333433211223555566543
No 212
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=21.62 E-value=2e+02 Score=19.60 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=23.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
-+.|+++++|--..+.|-. .+.+.+++....-..|++|++.-
T Consensus 42 ~~~~dlil~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDGL---SLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHTTCCSCEEEEESCCC
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHhcCCCCCEEEEecCCC
Confidence 4689999999766666642 23333433211223455566543
No 213
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=21.57 E-value=1.2e+02 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=37.9
Q ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 25 GDPPLVFLD-EPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 25 ~~P~lLiLD-EPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
.+++.+++| ...+.+|..+...+..+.+.++++|..+.++.-.-.
T Consensus 40 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 85 (117)
T 1h4x_A 40 GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPT 85 (117)
T ss_dssp TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHH
T ss_pred CCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 357788999 678889999999999999999888999988776543
No 214
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=21.47 E-value=2e+02 Score=20.18 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~ 67 (247)
-+.|+++|+|--..+.|-. .+.+.+++....-..|++|++.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDGI---EVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHTTCCCCEEEEECTT
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHcCCCCCCEEEEECCC
Confidence 3579999999877777642 3344444321122345555553
No 215
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=21.38 E-value=48 Score=27.62 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=32.6
Q ss_pred CCCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-CCcEEEEEcCCHHH
Q psy859 24 IGDPPLVFLDEPTS----------GVDPISRHRLWAVLSQIQ---K-TGQSIVLTSHSMDE 70 (247)
Q Consensus 24 ~~~P~lLiLDEPTs----------GLDp~~r~~i~~~l~~l~---~-~G~TIllsSH~l~e 70 (247)
...|.+|++||--. +-++.....+..++..+. . .+..||.+|+..+.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 46789999999732 236667777888877763 2 25677788887644
No 216
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=21.22 E-value=1e+02 Score=26.21 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----------------CCcEEEEEcCCH----HHHHhhcCEEEEEe
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK----------------TGQSIVLTSHSM----DECEALCNRLTIMR 82 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~----------------~G~TIllsSH~l----~e~e~l~drV~ii~ 82 (247)
.+.++++|||... ..++.+-+.++.+.. ....+|+||+.- .....+-+|+..++
T Consensus 102 ~~~kIiiLDEad~----~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~ 175 (212)
T 1tue_A 102 TDTKVAMLDDATT----TCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFE 175 (212)
T ss_dssp TTCSSEEEEEECH----HHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEE
T ss_pred CCCCEEEEECCCc----hhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEE
Confidence 4688999999872 223332233333311 124677777652 12245666777665
No 217
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=21.03 E-value=1.5e+02 Score=21.05 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=24.2
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~ 67 (247)
-+.|+++|+|--..|.|-. .+.+.+++.......|++|++.
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHHHCTTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCcEEEEeCCC
Confidence 4579999999877777642 3334444321223455666665
No 218
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=20.91 E-value=75 Score=27.26 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
.+++.++++||. -.+++.+...+.+.+.+. ..+..+|++|+...
T Consensus 117 ~~~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 117 RGRFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG
T ss_pred cCCeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 356889999995 346777777666666432 23566777887654
No 219
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.88 E-value=2.3e+02 Score=20.09 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=24.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCHH
Q psy859 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69 (247)
Q Consensus 24 ~~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l~ 69 (247)
-..|+++|+|--..+.|.. .+.+.+++....-..|++|++.-.
T Consensus 47 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~~~~~ 89 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGM---DILREIKKITPHMAVIILTGHGDL 89 (143)
T ss_dssp TTTCCEEEEESCCSSSCHH---HHHHHHHHHCTTCEEEEEECTTCH
T ss_pred CCCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCeEEEEECCCCH
Confidence 3689999999877776643 233444442222335555665533
No 220
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=20.77 E-value=2.1e+02 Score=19.65 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEcCC
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHS 67 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~-TIllsSH~ 67 (247)
..|+++|+|--..|.|-. .+.+.+++. .... .|++|++.
T Consensus 46 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~-~~~~~ii~~s~~~ 85 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDGI---EILKRMKVI-DENIRVIIMTAYG 85 (124)
T ss_dssp HCCSEEEEESCCTTCCHH---HHHHHHHHH-CTTCEEEEEESSC
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHHh-CCCCCEEEEEccC
Confidence 579999999877666642 333344432 2244 45556554
No 221
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.20 E-value=1.8e+02 Score=19.88 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 25 ~~P~lLiLDEPTsGLDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
..|+++|+|--..+.|-. .+.+.+++....-..|++|++.-
T Consensus 46 ~~~dlil~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNGI---DAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HCCSEEEEECSCGGGCHH---HHHHHHHHHCTTCCEEEEECTTC
T ss_pred cCCCEEEEeCCCCCCcHH---HHHHHHHhhCCCCeEEEEeCCCC
Confidence 479999999876665532 33444444322234555666543
No 222
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.15 E-value=2.2e+02 Score=19.65 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=22.7
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEcCCH
Q psy859 26 DPPLVFLDEPTSG-VDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68 (247)
Q Consensus 26 ~P~lLiLDEPTsG-LDp~~r~~i~~~l~~l~~~G~TIllsSH~l 68 (247)
.|+++|+|--..+ .|-. .+.+.+++....-..|++|++.-
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESSCC
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCCcc
Confidence 8999999976664 6532 34444444322233555565543
No 223
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.05 E-value=43 Score=28.75 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=27.3
Q ss_pred CChhHHHhHhhheeeeeCCeeeecCChHHH
Q psy859 112 SSMDECEALCNRLTIMVRGEMQCLGNITYL 141 (247)
Q Consensus 112 ~~~~~~~~lc~ri~i~~~G~~~~~Gt~~~L 141 (247)
-+++++..+|||+.+|.+|++++.|+++++
T Consensus 206 Hdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 206 HDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp SCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 357888889999999999999999999887
Done!