RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy859
(247 letters)
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 126 bits (317), Expect = 5e-33
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 56/221 (25%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
IG PPLV LDEPT+G+DP +R LW + I + G+++VLTSHSM+ECE
Sbjct: 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE----------- 2134
Query: 84 NELRKRRNCLSFRKEKMRLILTFPLCFPSSMDECEALCNRLTIMVRGEMQCLGNITYLKQ 143
ALC RL IMV+G QCLG I +LK
Sbjct: 2135 -----------------------------------ALCTRLAIMVKGAFQCLGTIQHLKS 2159
Query: 144 RYGQGFTLMIKLRE------GDLDQLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWS 197
++G G+ + +K++ DL+ +++ + F G V+ ++ H ++ +Q+ ++ S +
Sbjct: 2160 KFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQ-RERHYNMLQFQV--SSSSLA 2216
Query: 198 VLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGRGQRH 238
+F + + K S+ ++E+YS++ TTL+QVF+ FAK + + +
Sbjct: 2217 RIFQLLISHKDSL-LIEEYSVTQTTLDQVFVNFAKQQTETY 2256
Score = 62.0 bits (150), Expect = 6e-11
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+GD +V LDEPTSGVDP SR +W +L + ++G++I++++H MDE + L +R+ I+
Sbjct: 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQ 1135
Query: 84 NEL 86
L
Sbjct: 1136 GRL 1138
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 97.6 bits (244), Expect = 7e-25
Identities = 35/64 (54%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
IG P ++ LDEPTSG+DP SR +W ++ +++K G+SI+LT+HSMDE EALC+R+ IM
Sbjct: 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSD 207
Query: 84 NELR 87
+LR
Sbjct: 208 GKLR 211
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 85.9 bits (214), Expect = 6e-21
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+ DP L+ LDEPTSG+DP SR W +L +++K G++I+L+SH ++E E LC+R+ I+
Sbjct: 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNN 170
Query: 84 NEL 86
+
Sbjct: 171 GRI 173
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 79.7 bits (197), Expect = 1e-17
Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDECEALCNRLTIMR 82
+ DP L+ LDEPTSG+DP SR +W +L ++ K G +I+L++H ++E E LC+R+ I+
Sbjct: 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211
Query: 83 GNEL 86
++
Sbjct: 212 DGKI 215
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 70.4 bits (173), Expect = 3e-15
Identities = 20/59 (33%), Positives = 40/59 (67%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
+ +P L+ LDEPTSG+DP SR RL +L ++ + G+++++ +H + E +R+ +++
Sbjct: 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK 154
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 72.8 bits (179), Expect = 4e-15
Identities = 24/59 (40%), Positives = 42/59 (71%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
I P ++FLDEPT+G+DP +R +W + +++ G +I+LT+H M+E + LC+R+ I+
Sbjct: 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIID 198
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 70.1 bits (172), Expect = 1e-14
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85
P ++FLDEPT G+DP +R +W + ++++ G +I+LT+H M+E E LC+R+ I+
Sbjct: 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209
Query: 86 LRK 88
+
Sbjct: 210 IIA 212
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 68.3 bits (168), Expect = 5e-14
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 13 ACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
A +L DP ++ LDEPT+G+DP R L +L +++ G++I++ +H +D
Sbjct: 146 AGVLAM-------DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLL 198
Query: 73 ALCNRLTIMR 82
L +R+ ++
Sbjct: 199 ELADRVIVLE 208
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 69.5 bits (170), Expect = 8e-14
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
I DP L+ LDEPT+G+DP +RH +W L + G++I+LT+H M+E E LC+RL ++
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 68.3 bits (167), Expect = 2e-13
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ DP ++ LDEPT+G+DP +RH +W L + G++I+LT+H M+E E LC+RL ++
Sbjct: 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI 211
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 67.6 bits (165), Expect = 3e-13
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
I DP L+ LDEPT+G+DP +RH +W L + G++I+LT+H M+E E LC+RL ++
Sbjct: 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 64.1 bits (157), Expect = 1e-12
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
Q+Q + DP ++ LDEPTS +DPI+R + A+L +Q G ++VL +H +DE
Sbjct: 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164
Query: 72 EALCNRLTIMR 82
L +R+ ++R
Sbjct: 165 ARLADRVVVLR 175
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 61.9 bits (151), Expect = 1e-11
Identities = 22/59 (37%), Positives = 41/59 (69%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
I DP L+ LDEP SG+DP++ L V+ ++ + G++++L++H M+ E LC+R+ ++
Sbjct: 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLN 202
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 60.3 bits (147), Expect = 4e-11
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
R+ GI GDP ++ +DEPT+G+DP R R +LS++ + + ++L++H +++ E
Sbjct: 135 MRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHIVEDVE 193
Query: 73 ALCNRLTIMRGNELR 87
+LCN++ ++ +L
Sbjct: 194 SLCNQVAVLNKGKLV 208
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 60.8 bits (148), Expect = 7e-11
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
Q+Q G+ DPP++ +DEP +DPI+R +L + ++QK G++IV +H +DE
Sbjct: 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA 199
Query: 72 EALCNRLTIMRGNEL 86
L +R+ +M E+
Sbjct: 200 LKLADRIAVMDAGEI 214
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 58.9 bits (143), Expect = 2e-10
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ DPP++ LDEPT+G+D ++ L + Q++ G+ I+ ++H M E E LC+R+ ++
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVL 209
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 56.3 bits (137), Expect = 4e-10
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
+ L+ LDEPT+ + P RL+ V+ +++ G +++ SH +DE + +R+T++R
Sbjct: 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 56.5 bits (137), Expect = 1e-09
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
Q+Q G+ DPPL+ +DEP +DPI+R +L ++Q+ G++IV +H +DE
Sbjct: 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA 199
Query: 72 EALCNRLTIMRGNEL 86
L +R+ IM+ E+
Sbjct: 200 FRLADRIAIMKNGEI 214
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 56.2 bits (136), Expect = 1e-09
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++FLDEPT G+D +++ + L + + G +++LTSH M + EAL R+ ++
Sbjct: 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 55.7 bits (135), Expect = 2e-09
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 19 RQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73
+Q GI G+P L+ LDEPT+G+DP L ++ ++ G +++++SH + E +
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191
Query: 74 LCNRLTIMRGNELRKR 89
+ +R+ I+ +L +
Sbjct: 192 VADRIGIINKGKLIEE 207
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 55.1 bits (133), Expect = 3e-09
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+ DP ++ LDEPTSG+D +R + + Q++ G++++ +SH M E EALC+R+ ++
Sbjct: 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK 208
Query: 84 NEL 86
E+
Sbjct: 209 GEV 211
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 55.4 bits (134), Expect = 4e-09
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 17 IQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76
IQ S I +P L+ LDEP SG+DP++ L + ++++ G +I+ +SH M+ E LC+
Sbjct: 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCD 198
Query: 77 RLTIMRGNE 85
RL +++ +
Sbjct: 199 RLLMLKKGQ 207
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 55.0 bits (133), Expect = 4e-09
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 13 ACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
A +L P ++ LDEPT+G+DP R L +L ++ ++ G++I++ +H ++
Sbjct: 150 AGVLAMG-------PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV 202
Query: 72 EALCNRLTIMRGNELRK 88
+R+ ++ ++
Sbjct: 203 LEYADRVVVLDDGKILA 219
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 53.5 bits (129), Expect = 2e-08
Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIM 81
P ++FLDEPT G+D ++ + L + ++ +++LT+H D+ LC+R+ ++
Sbjct: 174 PPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI 230
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 53.8 bits (130), Expect = 2e-08
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
Q+Q I +P ++ DE TS +DP + + +L I + G +IVL +H M+
Sbjct: 146 QKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV 205
Query: 72 EALCNRLTIMRGNEL 86
+ +C+R+ ++ L
Sbjct: 206 KRICDRVAVLDQGRL 220
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 53.2 bits (128), Expect = 2e-08
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ LDEPT+G+DP S+ ++ +L +Q ++I+L SH M+E + + +M+
Sbjct: 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK 220
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 53.3 bits (128), Expect = 3e-08
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
+Q G+ +P ++ +DE S +DP+ R + L ++Q T ++IV +H +DE
Sbjct: 134 MQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA 193
Query: 72 EALCNRLTIMRGNEL 86
+ +R+ IM+ E+
Sbjct: 194 IRIGDRIVIMKAGEI 208
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 52.9 bits (128), Expect = 5e-08
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
D ++ LDEPT+ + RL+ ++ +++ G +I+ SH +DE + +R+T++R
Sbjct: 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLR 219
Score = 50.6 bits (122), Expect = 3e-07
Identities = 17/61 (27%), Positives = 37/61 (60%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
DP ++ LDEPT G+D ++ ++ ++ ++ G++I++ S + E L +R+ +MR
Sbjct: 419 DPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGR 478
Query: 86 L 86
+
Sbjct: 479 I 479
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 51.8 bits (125), Expect = 5e-08
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMR 82
P L+ LDEP +D ++R L L ++ ++T ++++L +H +DE L +R+ ++
Sbjct: 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
Query: 83 GNELRKRR 90
R
Sbjct: 206 NRPGRIGE 213
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 51.3 bits (123), Expect = 9e-08
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
I DP ++ LDEPT+G+DP + V+ I K ++I+L++H M E EA+C+R+ I+
Sbjct: 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIMQEVEAICDRVIII 205
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 50.2 bits (121), Expect = 1e-07
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM-DECEALCNRLTIM 81
+ +P L+FLDEPTSG+D S ++ ++L ++ TG++I+ + H E L ++L ++
Sbjct: 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 50.3 bits (121), Expect = 1e-07
Identities = 13/61 (21%), Positives = 34/61 (55%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
L+ DEPTSG+D + R+ ++ ++ G+++++ +H + +C+R+ ++
Sbjct: 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203
Query: 86 L 86
+
Sbjct: 204 I 204
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 50.5 bits (122), Expect = 1e-07
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRG 83
DP ++ LDEP S +D ++R +L L I ++TG++++L +H +DE L +R+ ++
Sbjct: 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 50.7 bits (122), Expect = 1e-07
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTI 80
DP L+FLDEPTSG+DPIS + ++ ++ G ++++ +H +D + +R+ +
Sbjct: 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAV 218
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 50.3 bits (121), Expect = 2e-07
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77
+P L+ LDEP +GVD + ++ +L ++++ G+++++ +H + A +R
Sbjct: 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR 208
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 50.5 bits (121), Expect = 2e-07
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84
DP ++ +DE S +DP+ R + L ++Q ++IV +H +DE + +R+ IM+
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241
Query: 85 EL 86
E+
Sbjct: 242 EI 243
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 49.5 bits (119), Expect = 2e-07
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77
DP L+ LDEP +GVDP ++ ++ +L ++++ G +I++ +H + +R
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR 201
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 49.4 bits (119), Expect = 3e-07
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71
Q+Q + +P L+ LDEP S +D R L L ++Q+ G + + +H +E
Sbjct: 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194
Query: 72 EALCNRLTIMR 82
AL +R+ +M
Sbjct: 195 LALADRIAVMN 205
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 50.2 bits (120), Expect = 3e-07
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 3 PSSLQPSESPACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLW-AVLSQIQKTGQSI 61
P L E L Q I +P +V LDEPT +DPI++ + ++L ++ Q+
Sbjct: 425 PDELSEGERHRVALAQVL---IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 62 VLTSHSMDECEALCNRLTIMRGNELRK 88
++ SH MD +C+R +MR ++ K
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVK 508
Score = 30.9 bits (70), Expect = 0.59
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 28 PLVFL-DEPTSGVDPISR---HRLWAVLSQIQKTGQSIVLTSH 66
P +FL DEPT +DP + H A+ ++ +G S+VLTSH
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHN--ALEEAVKASGISMVLTSH 227
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 49.5 bits (119), Expect = 3e-07
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
Q+Q GI +P ++ DE TS +DP + + A+L I ++ G +IVL +H M+
Sbjct: 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV 204
Query: 72 EALCNRLTIMRGNEL 86
+ +C+R+ +M E+
Sbjct: 205 KRICDRVAVMEKGEV 219
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 49.0 bits (118), Expect = 4e-07
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
DP L+ LDEP +G++P L ++ ++++ G +++L H MD +L +R+T++
Sbjct: 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 49.8 bits (119), Expect = 4e-07
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRG 83
+ P++ +DEP S +DP+ R +L L ++Q ++IV SH +DE + NR+ IM G
Sbjct: 182 EAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIGNRIAIMEG 240
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 49.3 bits (117), Expect = 4e-07
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ LDEPT+G+DP +R + + I ++GQ++VL +H MD+
Sbjct: 162 EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 49.1 bits (117), Expect = 5e-07
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ LDEP +G+DP R + + QK G +++L +H+MD+ + + ++ +
Sbjct: 163 EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222
Query: 86 LRK 88
L K
Sbjct: 223 LIK 225
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 47.2 bits (113), Expect = 9e-07
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QRQ G+ G+P ++ LDEP S +D L ++ ++ G + ++ +H E
Sbjct: 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL 159
Query: 73 ALCNRLTIMRG 83
A +R+ ++
Sbjct: 160 ASADRILVLED 170
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 47.7 bits (114), Expect = 1e-06
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85
P L+ LDEP S +D R +L L QI+K ++ +H + E E L +R+ +M
Sbjct: 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
Query: 86 LRKR 89
L+
Sbjct: 210 LQYI 213
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 48.7 bits (117), Expect = 1e-06
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
L+ LDEPT+ + P L+ +L ++ G++I+ +H + E A+ +R+T++R
Sbjct: 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRR 215
Score = 27.5 bits (62), Expect = 7.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
P L+ +PT G+D + + L +++ G++++L S +DE L +R+ ++
Sbjct: 421 RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVI 476
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 48.2 bits (115), Expect = 1e-06
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ LDEPT+G+DP R L + ++ ++G +IVL +H MD+
Sbjct: 163 EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD 207
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 47.5 bits (114), Expect = 1e-06
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRL 78
DP L+ DEPT+G+DPI+ + ++ ++K G + ++ +H +D A+ +R+
Sbjct: 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRI 207
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 47.6 bits (114), Expect = 1e-06
Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMR 82
+ P++ LDEPTS +D + + +L + + G ++V+ H ++ + L +++
Sbjct: 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK 213
Query: 83 GNEL 86
++
Sbjct: 214 DGKI 217
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 15 ILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--QKTGQSIVLTSHSMDE 70
+LI R + + DP L+ LDEP G+D I+R +L L ++ +++ +H +E
Sbjct: 180 VLIAR-AL-VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE 235
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 47.6 bits (114), Expect = 2e-06
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGN 84
DP ++ +DE S +DP+ R + L ++Q + ++IV +H +DE L +R+ IM+
Sbjct: 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDG 237
Query: 85 EL 86
L
Sbjct: 238 RL 239
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 47.4 bits (113), Expect = 2e-06
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
RQ GI +P L+ LDEP +D ++R ++ +L + Q+TG+ ++L +H ++E
Sbjct: 137 MRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA 196
Query: 72 EALCNRLTIMRG 83
L RL ++
Sbjct: 197 LFLATRLVVLSP 208
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 47.9 bits (114), Expect = 2e-06
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
D ++ +DEPTS + L+ +++Q++K G +IV SH + E +C+R T+M+
Sbjct: 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMK 219
Score = 44.0 bits (104), Expect = 4e-05
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 22 WGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
W P ++ DEPT G+D ++ ++ V+ Q+ G+ I++ S + E +C+R+ +
Sbjct: 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482
Query: 82 RGNEL 86
L
Sbjct: 483 CEGRL 487
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
LDEPT+ + P RL++ + ++ G IV SH + E L +R+++MR
Sbjct: 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMR 214
Score = 45.4 bits (108), Expect = 1e-05
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
P L+ +DEPT GVD +R+ ++ ++ I +++ S ++E E + +R+ +M E
Sbjct: 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480
Query: 86 L 86
+
Sbjct: 481 I 481
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 47.2 bits (113), Expect = 3e-06
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDEC 71
QRQ I +P L+ LDEP S +D + ++ +L +Q + G + + SH +
Sbjct: 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV 493
Query: 72 EALCNRLTIMRGNEL 86
+ +R+ +M +
Sbjct: 494 RYIADRVAVMYDGRI 508
Score = 42.2 bits (100), Expect = 1e-04
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR 82
P L+ DEPT+ +D ++ ++ +L +Q + G +++ +H + L +R+ +M
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY 229
Query: 83 GNEL 86
E+
Sbjct: 230 KGEI 233
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 46.6 bits (111), Expect = 4e-06
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIM 81
P ++ LDEPT+G+DP R + + ++ K +I+L SHSM++ L +R+ +M
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM 218
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 45.5 bits (108), Expect = 7e-06
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+ P L+ LDEPT+G+DPI L ++ + G +++L+SH + E + L + + I+
Sbjct: 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199
Query: 84 NELR 87
L
Sbjct: 200 GVLG 203
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 45.8 bits (109), Expect = 7e-06
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIM 81
+P ++ LDEPT+G+DP R + + ++ K G + VL +HSM++ +++ +M
Sbjct: 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM 219
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 46.2 bits (110), Expect = 8e-06
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
+ DPPL+F DEPTSG+D + + VL + + G++I+ T H
Sbjct: 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 44.3 bits (106), Expect = 9e-06
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
+ DPP++ LDE TS +DP + + L + K G+++++ +H +
Sbjct: 112 LRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL 155
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 45.3 bits (108), Expect = 9e-06
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDEC 71
QRQ I +P L+ LDEPTS +D + ++ +L +++K + + SH +
Sbjct: 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV 205
Query: 72 EALCNRLTIMRGNEL 86
E +C+R+ +M ++
Sbjct: 206 EHMCDRIAVMDNGQI 220
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 44.8 bits (107), Expect = 1e-05
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIM 81
+P L+ DEPTS +D + ++ +L ++Q+ G +++ +H + + +R+ +M
Sbjct: 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 44.3 bits (105), Expect = 1e-05
Identities = 16/43 (37%), Positives = 32/43 (74%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
P ++ LDEPT+G+DP R ++ A+L +++ G ++V+++H +D
Sbjct: 146 PDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 45.1 bits (107), Expect = 1e-05
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P ++ LDEPTSG+DP+ ++ +L + K G +I++++H +D +++ +M ++
Sbjct: 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
Query: 87 RK 88
K
Sbjct: 216 IK 217
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 45.5 bits (108), Expect = 1e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
+ +V +DEPTS + + L+ ++ ++++ G IV SH M+E LC+ +TI+R
Sbjct: 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILR 208
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 15 ILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL 74
++I R W + P ++ LDEPT G+D ++ ++ +++++ K + I++ S M E +
Sbjct: 400 VIIGR--WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGI 457
Query: 75 CNRLTIM 81
+R+ +M
Sbjct: 458 TDRILVM 464
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 44.6 bits (106), Expect = 1e-05
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL-TSHSMDECEALCNRLTIMRGN 84
+P ++ LDEP S +D ++ +L L +I+K VL +H +E AL +++ IM
Sbjct: 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206
Query: 85 EL 86
+L
Sbjct: 207 KL 208
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 44.5 bits (106), Expect = 1e-05
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH--SMDE 70
QRQ+ + DPP++ LDEPTS +D S RL L Q+ +++++ +H S+ +
Sbjct: 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITHRPSLLD 203
Query: 71 CEALCNRLTIMRG 83
L +R+ +M
Sbjct: 204 ---LVDRIIVMDS 213
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 43.6 bits (104), Expect = 2e-05
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
DP ++ LDEPT GVD ++ ++ ++ ++ G++++L S +DE LC+R+ +M
Sbjct: 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181
Query: 86 L 86
+
Sbjct: 182 I 182
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 44.9 bits (107), Expect = 2e-05
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 19/77 (24%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPIS----RHRLWAVLSQIQKTGQSIVLTSH-- 66
QRQ+ + DPP++ LDEPTS +D S + RL L+ G+++VL +H
Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-----GKTLVLVTHRT 660
Query: 67 SMDECEALCNRLTIMRG 83
S+ + L +R+ +M
Sbjct: 661 SLLD---LVDRIIVMDN 674
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 44.1 bits (104), Expect = 2e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P + LDEP +GVDPIS + ++ ++ +G +++T H++ E A+C R I+
Sbjct: 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGH 214
Query: 86 L 86
L
Sbjct: 215 L 215
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 44.5 bits (106), Expect = 2e-05
Identities = 14/63 (22%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRG 83
+P L+ DEPT+ +D + ++ +L ++Q+ G +++L +H + + +R+ +M
Sbjct: 170 LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229
Query: 84 NEL 86
+
Sbjct: 230 GRI 232
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 43.7 bits (104), Expect = 2e-05
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P + LDEP +GVDPI+ + ++ ++ G +++T H++ E ++ +R I+ +
Sbjct: 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210
Query: 86 L 86
+
Sbjct: 211 V 211
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 43.6 bits (104), Expect = 3e-05
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ P L+ LDEP+ G+ P ++ + +++ G +I+L + + +R ++
Sbjct: 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVL 205
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 43.4 bits (103), Expect = 3e-05
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
DP ++ LDEPTSG+D + L + LSQ+ + + ++LT H
Sbjct: 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 43.6 bits (104), Expect = 3e-05
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMD 69
DP ++ DEPT +D + + +L ++ K G +IV+ +H +
Sbjct: 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 42.8 bits (102), Expect = 3e-05
Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK----TGQSIVLTSHSMDECEALCNRLTIM 81
+PP++ LDEPTS +D H++ +L +++ G+++V+ H ++ +R+ ++
Sbjct: 115 EPPILLLDEPTSHLDI--AHQI-ELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171
Query: 82 RGNEL 86
+ +
Sbjct: 172 KDGRI 176
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 43.3 bits (102), Expect = 4e-05
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ +DEPTS +DPI+ H++ ++ +++K +IV+ +HSM + + +R E
Sbjct: 163 EPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQARRISDRTAFFLMGE 221
Query: 86 L 86
L
Sbjct: 222 L 222
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 43.5 bits (102), Expect = 4e-05
Identities = 16/57 (28%), Positives = 36/57 (63%)
Query: 30 VFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
+ LDEPT+G+DP R ++ A++ +I G ++++SH +D + + + ++R ++
Sbjct: 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 43.4 bits (103), Expect = 5e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
DEPTS + +L+ V+ +++ G+ I+ SH M+E ALC+ +T+ +
Sbjct: 164 FDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFK 214
Score = 37.2 bits (87), Expect = 0.006
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
++ LDEPT G+D ++H ++ V+ ++ G +++ S + E + +R+ +MR
Sbjct: 417 VILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR 470
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 42.9 bits (101), Expect = 7e-05
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGN 84
+P ++ DE TS +DP + + +L +I + G +I+L +H MD + +C+ + ++
Sbjct: 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217
Query: 85 EL 86
EL
Sbjct: 218 EL 219
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 42.1 bits (99), Expect = 8e-05
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRL 78
D P++ LDEP + +DP R + ++ + +T ++++ +H ++ + L R+
Sbjct: 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV 199
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 42.1 bits (99), Expect = 8e-05
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
P ++ LDEP +G+D ++ L + ++ G +I++T+H + + A C+R+ ++ G
Sbjct: 132 PSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNG 188
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 42.1 bits (100), Expect = 1e-04
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
DP ++ DEPTS +DP + V+ + + G ++++ +H M + +R+ M
Sbjct: 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 41.7 bits (99), Expect = 1e-04
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMR 82
I +P ++ DEPT +D + + +L ++ ++ G++I++ +H E +R+ ++
Sbjct: 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELK 216
Query: 83 GNELRKRRN 91
++ +
Sbjct: 217 DGKIEEEEL 225
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ LDEP +D R L L ++ + G + V +H +E L +R+ ++
Sbjct: 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 41.4 bits (98), Expect = 1e-04
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIM 81
P L+ LDEP +G++P L ++ +++ G +I+L H M L +R+ ++
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
PPL+ DEPT +DP +R + +L ++ G++I++ +H
Sbjct: 152 PPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 11/57 (19%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSH 66
QR+ IG P ++FLDEPTSG+D + + ++ ++K +GQ+I+ T H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAA---YNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 41.8 bits (98), Expect = 2e-04
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIM 81
P L+ DEPT+ ++P ++ +++ +LS++ Q + +I+L SH + +++ ++
Sbjct: 177 PRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
+P + DEPT+G+DP + + + K G++I+L +H +D
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 41.1 bits (97), Expect = 3e-04
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
P ++ LDEPT GVD ++ ++ +++Q + G SI+L S M E + +R+ +M
Sbjct: 414 PKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMH 469
Score = 34.6 bits (80), Expect = 0.045
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
+DEPT + L+ V+ +++ G+ IV SH + E +C+ +T+ R
Sbjct: 165 MDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFR 215
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 40.9 bits (96), Expect = 3e-04
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
++Q IG P L+ +DEP + +D ++ + L ++ + G I+ SHS+ E
Sbjct: 136 EKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV 195
Query: 72 EALCNRLTIMRGNELR 87
L +R+ ++ +
Sbjct: 196 LRLADRVVVLEDGRVA 211
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P ++ LDEPTS +DPIS ++ L + K +++L + SM + + +R +L
Sbjct: 167 PKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 41.2 bits (97), Expect = 4e-04
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQK---TGQSIVLTSH 66
L+FLDEPTSG+D + W++ ++K GQ+I+ T H
Sbjct: 923 LLFLDEPTSGLDSQTA---WSICKLMRKLADHGQAILCTIH 960
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 40.6 bits (95), Expect = 4e-04
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ LDEPT+G+DP+ + +L ++QK G +I++ +H +D C+ + +M
Sbjct: 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM 215
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 40.3 bits (94), Expect = 5e-04
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P ++ LDEP S +DPIS ++ +++++++ SI++ +H+M + + +R +L
Sbjct: 183 PAVLLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQALRVSDRTAFFLNGDL 241
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 39.9 bits (94), Expect = 5e-04
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
+P + LDEP +GVDPI+ + ++ ++ G +++T H++ E +C+R I+
Sbjct: 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS 213
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 39.9 bits (94), Expect = 5e-04
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
P ++ DEP + +DP S ++ +L I Q+ G ++++ H +D + +R+ ++
Sbjct: 165 QPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224
Query: 85 E 85
Sbjct: 225 R 225
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 40.5 bits (95), Expect = 5e-04
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDEC 71
QRQ I P L+ LDEPTS +D + ++ A+L +Q+ Q + + SH +
Sbjct: 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV 489
Query: 72 EALCNRLTIMRGNELRKRRNC 92
ALC+++ ++R E+ ++ +C
Sbjct: 490 RALCHQVIVLRQGEVVEQGDC 510
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 40.1 bits (94), Expect = 5e-04
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
P L+ DEPTS +DP RH + V+ + + G ++V+ +H + E + +RL +
Sbjct: 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 40.4 bits (94), Expect = 5e-04
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+P ++ +DE S +DP+ R + L ++Q K ++IV SH +DE + +R+ IM+
Sbjct: 182 NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241
Query: 85 EL 86
E+
Sbjct: 242 EV 243
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 40.1 bits (94), Expect = 6e-04
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
DP ++ LDEP + +DP + L +L ++ G+++++ +H +D
Sbjct: 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 40.2 bits (94), Expect = 6e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
+P L+ LDEPTSG+D + +RL L + + G++IV + H
Sbjct: 224 NPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 39.7 bits (92), Expect = 7e-04
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT-SHSMDECEALCNRLTIMRGNE 85
P ++ LDE TS +DP R + V+ +I++ Q VL+ +H +DE A +R+ +M+ E
Sbjct: 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGE 217
Query: 86 LRK 88
+ K
Sbjct: 218 IIK 220
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 39.5 bits (92), Expect = 7e-04
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ LDEPTS +DPI+ R+ +L ++ + +IV+ +H++ + + + + M E
Sbjct: 164 EPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHNIGQAIRIADYIAFMYRGE 222
Query: 86 L 86
L
Sbjct: 223 L 223
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 39.2 bits (92), Expect = 7e-04
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
+ PPL+ DEPT +DP R+ +L ++ K G ++++ +H + + + +R+ I+
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.8 bits (93), Expect = 7e-04
Identities = 17/62 (27%), Positives = 40/62 (64%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ LDEPT GVD +++ ++ +++Q+ + G +I++ S + E L +R+ ++ +
Sbjct: 421 NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
Query: 86 LR 87
L+
Sbjct: 481 LK 482
Score = 36.7 bits (85), Expect = 0.007
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
L+ LDEP+S + L ++ ++ G + V SH ++E +A+C+ + ++R +
Sbjct: 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 39.2 bits (92), Expect = 8e-04
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
QRQ +G +P + +DEP S +D R ++ A L ++Q+ G + + +H E
Sbjct: 135 QRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA 194
Query: 72 EALCNRLTIMR 82
+ +R+ +M
Sbjct: 195 MTMADRIAVMN 205
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 39.0 bits (92), Expect = 8e-04
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
Q+Q I +P ++ DEPTS +DP + V+ + + G ++V+ +H M
Sbjct: 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 39.3 bits (92), Expect = 9e-04
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
I D P++ LDEPT+ +D +R + ++++ + G +++ H + E + +R+ +
Sbjct: 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 39.6 bits (93), Expect = 9e-04
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDEC 71
QRQ I P L+ LDEPTS +D + ++ +L +Q K G S + SH +
Sbjct: 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV 490
Query: 72 EALCNRLTIMRGNE 85
ALC+R+ +MR +
Sbjct: 491 RALCHRVIVMRDGK 504
Score = 29.6 bits (67), Expect = 1.9
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMR 82
+P L+ DEPT+ +D + ++ +L ++Q G +I+ +H + +R+ +M+
Sbjct: 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232
Query: 83 GNEL 86
E+
Sbjct: 233 HGEI 236
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 39.5 bits (92), Expect = 0.001
Identities = 15/45 (33%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ +DEPTS +DPIS ++ ++ +++K SI++ +H+M +
Sbjct: 185 EPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNMQQ 228
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 39.3 bits (92), Expect = 0.001
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
QRQ GI +P L+ LDEP +D +R ++ +L ++ Q+TG+ ++L +H ++E
Sbjct: 133 QRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
Query: 72 EALCNRLTIM 81
+ L ++
Sbjct: 193 VFMATELVLL 202
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 39.0 bits (92), Expect = 0.001
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 28 PLVFL-DEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85
P V L DE TS +DP + + +L I + G +IVL +H MD + +C+R+ ++
Sbjct: 159 PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218
Query: 86 L 86
L
Sbjct: 219 L 219
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 38.8 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSHSMDECEA 73
+ P L+ LDEPT G+DP SR + A + + G S++ +H +DE EA
Sbjct: 148 LHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEA 198
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P ++ LDEPTS +DPI+ ++ ++ ++ K +IV+ +H+M
Sbjct: 163 PEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNM 203
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 38.5 bits (90), Expect = 0.001
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRL 78
+ P++ LDEP S +DP R + A++SQ+ + ++++ +H ++ + +R+
Sbjct: 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRV 200
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 38.9 bits (91), Expect = 0.002
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
D PL LDEPT G+DPI+ ++ A+L + G+++++ +H + E +R+ ++
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLER-MDRIIVLD 546
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 38.8 bits (91), Expect = 0.002
Identities = 17/62 (27%), Positives = 40/62 (64%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ LDEPT G+D +++ ++ +++Q+ + G +I++ S + E L +R+ +M +
Sbjct: 423 NPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482
Query: 86 LR 87
L+
Sbjct: 483 LK 484
Score = 32.6 bits (75), Expect = 0.16
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
L+ LDEPT+ + L ++ ++ G + + SH ++E +A+ + + ++R
Sbjct: 164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIR 217
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 38.2 bits (89), Expect = 0.002
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR-LTIMRG 83
P ++ DEPT +DP + + +L +I K G ++V+ +H+ + + +R + + RG
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 37.9 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
+P ++ LDEPTS +DPIS ++ ++++++K +IV+ +H+M
Sbjct: 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM 200
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
QRQ + GDP LV LDEP S +D L + ++ G ++V+ +H
Sbjct: 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 38.2 bits (88), Expect = 0.002
Identities = 15/51 (29%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76
+P ++ +DEPTS +DPI+ ++ ++ +++K SI++ +HSM + + + +
Sbjct: 243 EPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQRISD 292
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 38.7 bits (91), Expect = 0.002
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
QRQ + P ++ LDE TS +DP + + L QI G+++++ +H
Sbjct: 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAH 666
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 37.9 bits (89), Expect = 0.002
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ +DE + D + + L ++ K G++++L SH + LC+R ++ +
Sbjct: 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
Query: 86 LR 87
+R
Sbjct: 220 IR 221
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 37.9 bits (89), Expect = 0.002
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
Q+Q I P L+ DEP + +DP S ++ +L +I ++ G +++++ H +D
Sbjct: 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208
Query: 72 EALCNRLTIMR 82
+R+ ++
Sbjct: 209 REYADRIVGLK 219
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 37.4 bits (86), Expect = 0.003
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67
L+ +DEP +G+ P +L +L ++ + G ++ T+HS
Sbjct: 210 KGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHS 251
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 37.5 bits (87), Expect = 0.003
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIM 81
+P ++ LDEPT+G+DP L L+ + +T G +++ ++H +D + + + +M
Sbjct: 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM 211
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 37.7 bits (88), Expect = 0.003
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT-SHSMDECEALCNRLTIMRGN 84
+P ++ DE TS +DP + + ++ ++KT + +++ +H MDE L +++ +
Sbjct: 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEG 218
Query: 85 EL 86
+L
Sbjct: 219 KL 220
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 37.7 bits (88), Expect = 0.004
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P L+ LDEP G+D SR +L +L+ + ++G ++VL + DE
Sbjct: 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197
Score = 30.4 bits (69), Expect = 0.81
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 27 PPLVFLDEPTSGVDPISR 44
P L+ LDEP G+DP++R
Sbjct: 420 PTLLILDEPLQGLDPLNR 437
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 36.6 bits (85), Expect = 0.004
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 28 PLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLT 64
PL LDE G+DP L A+L + K Q IV+T
Sbjct: 101 PLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVIT 138
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.3 bits (86), Expect = 0.004
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
P ++ LDEPTS +DPIS ++ +L ++ + +I+L +HSM + + ++
Sbjct: 166 KPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGN 224
Query: 86 L 86
L
Sbjct: 225 L 225
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.3 bits (86), Expect = 0.004
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ +DEPTS +DP S R+ +++ ++K +I++ +H+M +
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKV-TTIIIVTHNMHQ 209
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.3 bits (86), Expect = 0.004
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ DEPTS +DPIS R+ ++ ++K +IV+ +H+M +
Sbjct: 173 PKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTHNMQQ 215
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 37.3 bits (86), Expect = 0.005
Identities = 16/62 (25%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
P ++ +DEP G+DPI+ ++ +++ ++ ++ ++V+ SH++ + L + +GNE
Sbjct: 169 PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNE 228
Query: 86 LR 87
R
Sbjct: 229 NR 230
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 37.0 bits (86), Expect = 0.005
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIMRGNE 85
P + DEPT+ +DP R + + ++ K G +I+L +H M+E +R+ +M +
Sbjct: 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA-VEADRIIVMDSGK 221
Query: 86 L 86
+
Sbjct: 222 V 222
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 36.9 bits (85), Expect = 0.005
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77
+P ++ +DEPTS +DPIS ++ ++ + K +I++ +H+M + + +R
Sbjct: 168 EPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDR 218
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 36.9 bits (85), Expect = 0.006
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEPTS +DPIS ++ ++ +++K +IV+ +H+M +
Sbjct: 166 PDVILMDEPTSALDPISTLKIEDLMVELKKE-YTIVIVTHNMQQ 208
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 36.9 bits (85), Expect = 0.006
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
DP ++ DEPTS +DPI+ + ++S + K +I++ +H+M + + + M E
Sbjct: 179 DPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGE 237
Query: 86 L 86
L
Sbjct: 238 L 238
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 36.7 bits (85), Expect = 0.006
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIM 81
P ++ LDEP +D ++R L L QI ++ ++++ +H +DE L +R+ ++
Sbjct: 133 PKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 36.5 bits (85), Expect = 0.006
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P ++ LDEP S +DPIS R+ +++++ K ++V+ +H+M
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNM 215
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 36.5 bits (84), Expect = 0.006
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEP S +DPIS ++ ++ +++K +IV+ +H+M +
Sbjct: 165 PSVLLMDEPASALDPISTAKVEELIHELKKD-YTIVIVTHNMQQ 207
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 37.1 bits (86), Expect = 0.007
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH--SMDECEALCNRLTIM 81
+ +P ++F+DEPTSG+D + + + TG+++V T H S+D EA L +
Sbjct: 1035 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094
Query: 82 RGNEL 86
RG ++
Sbjct: 1095 RGGQV 1099
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 36.1 bits (84), Expect = 0.007
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH------SMDECEALCNRLT 79
D P+V LDEPT G+DPI+ +L +++ ++ K ++++ +H MD+ L N
Sbjct: 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIEHMDKILFLENGKI 174
Query: 80 IMRG 83
IM+G
Sbjct: 175 IMQG 178
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 36.7 bits (85), Expect = 0.007
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
P LVF+DEPT G+D + RL +L +++ G ++V+ +H + L +RL +M+
Sbjct: 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ 227
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 36.3 bits (84), Expect = 0.008
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVL-SQIQKTGQSIVLTSHSMDECEALCNRLTIMR 82
P LVF+DEPT G+D + RL +L ++ G ++++ +H + L RL +M+
Sbjct: 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 36.5 bits (85), Expect = 0.008
Identities = 16/43 (37%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
+P ++ LDEPTS +DPIS ++ +++++ K+ +IV+ +H+M
Sbjct: 186 EPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTHNM 227
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 36.3 bits (85), Expect = 0.008
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 17/78 (21%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDP-----ISRHRLWAVLSQIQK-TGQSIVLTSH 66
Q+Q I P L+ LDEPT G+ P I R V+ +++ G +I+L
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR-----VIRRLRAEGGMAILLVEQ 190
Query: 67 SMDECEALCNRLTIM-RG 83
+D L +R +M RG
Sbjct: 191 YLDFARELADRYYVMERG 208
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 36.4 bits (84), Expect = 0.008
Identities = 14/68 (20%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
P++ LDEP S +DP+ R + A++ Q+ + +++++ +H + + A+ +++ ++
Sbjct: 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205
Query: 85 ELRKRRNC 92
+++ +C
Sbjct: 206 KIKVVSDC 213
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 36.1 bits (84), Expect = 0.009
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
Q+Q I P L+ DEP + +DP + ++ L +I ++ G ++++ H +D
Sbjct: 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA 209
Query: 72 EALCNRLTIMRGNEL 86
+ +R+ ++ E+
Sbjct: 210 KKYADRIVGLKAGEI 224
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 36.3 bits (84), Expect = 0.009
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
P ++ LDEP S +D R ++ L IQ + G + V +H +E + +R+ IMR +
Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178
Query: 86 L 86
+
Sbjct: 179 I 179
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 36.0 bits (83), Expect = 0.010
Identities = 14/58 (24%), Positives = 37/58 (63%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
++ LDEP +GVD + R+ ++L +++ G+++++++H++ C+ +++G L
Sbjct: 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVL 220
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 36.1 bits (83), Expect = 0.011
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ LDEP S +DPI+ R+ ++ +++K +I L +H+M +
Sbjct: 167 EPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIALVTHNMQQ 210
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 36.0 bits (83), Expect = 0.011
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
P ++ DEPT+G+DP H + ++ + +++ + +H+M+
Sbjct: 195 PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 35.8 bits (82), Expect = 0.013
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P L+ LDEPTS +DPIS + +L ++ S+++ +H+M +
Sbjct: 161 PKLLLLDEPTSALDPISSGVIEELLKELSHN-LSMIMVTHNMQQ 203
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 35.7 bits (83), Expect = 0.015
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
QRQ + P + LDEP S +D R + + + ++ + G + + +H E
Sbjct: 138 QRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA 197
Query: 72 EALCNRLTIMRGNELRK 88
L +R+ +M +++
Sbjct: 198 MTLADRIVVMNDGRIQQ 214
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.4 bits (82), Expect = 0.017
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P ++ +DEPTS +DPIS ++ ++ +++K +IV+ +H+M
Sbjct: 165 PEVLLMDEPTSALDPISTLKIEELIQELKKD-YTIVIVTHNM 205
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 35.7 bits (83), Expect = 0.017
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67
D PL+ LDEPT+ +D + + L + + G++++L +H
Sbjct: 476 DAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHR 516
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 35.7 bits (83), Expect = 0.019
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
QRQ + GDP LV LDEP S +D L A + + G ++V+ +H
Sbjct: 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 35.4 bits (82), Expect = 0.019
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 20 QSWG-IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78
Q W + +FLDEPTS +D +H + Q+ + G +++ H ++ +R+
Sbjct: 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRI 211
Query: 79 TIMRGNELR 87
++ +
Sbjct: 212 VLLHQGRVI 220
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 35.3 bits (81), Expect = 0.020
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEP S +DPIS ++ ++ ++ K +IV+ +H+M +
Sbjct: 164 SPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQ 207
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 35.1 bits (81), Expect = 0.021
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
I D P++ LDEPT+ +D +R + ++ + + G ++V H + EA+ +RL +
Sbjct: 168 IVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 35.0 bits (81), Expect = 0.021
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 26 DPPLVFLDEPTSGVDPISRH-RLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
D P+V LDEPT+ +D I+ L ++ ++ G+++V H +++ C+ L ++
Sbjct: 156 DTPVVLLDEPTTYLD-INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214
Query: 85 EL 86
+
Sbjct: 215 HV 216
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 34.9 bits (81), Expect = 0.022
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
P LVF+DEPT G+D + RL +L +++ G ++V+ +H + L +RL +M+
Sbjct: 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 35.0 bits (81), Expect = 0.023
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT-SHSMDECEALCNRLTIMRGNE 85
P ++ LDE TS +DP R + + Q+++ VL+ +H +DE A +R+ +M E
Sbjct: 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGE 217
Query: 86 L 86
+
Sbjct: 218 I 218
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 35.2 bits (81), Expect = 0.024
Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIM 81
P L+ DEPT+ ++P ++ +++ +L+++ Q +I+L SH + +++ ++
Sbjct: 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 34.7 bits (79), Expect = 0.026
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ +DEP S +DP+S R+ ++ ++ K +I + +H+M +
Sbjct: 165 EPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQ 208
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 34.9 bits (80), Expect = 0.027
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ +DEPTS +DP+S ++ ++ ++ K +IV+ +H+M + + ++ E
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIVIVTHNMQQAARVSDQTAFFYMGE 231
Query: 86 L 86
L
Sbjct: 232 L 232
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 35.0 bits (81), Expect = 0.027
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
++Q IG P L+ +DEP + +D + + L ++ + I+ SHS+DE
Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192
Query: 72 EALCNRLTIM 81
L +R+ ++
Sbjct: 193 LRLADRVVVL 202
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 34.7 bits (80), Expect = 0.027
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P ++ +DEP S +DPIS +L + ++ K +I++ +H+M
Sbjct: 182 PDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNM 222
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 34.8 bits (80), Expect = 0.028
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEP S +DPIS R+ ++ ++ K +I++ +H+M +
Sbjct: 170 PEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQ 212
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 34.6 bits (80), Expect = 0.029
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
PL LDEP + +D L A+++ G ++LT+H
Sbjct: 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 34.4 bits (79), Expect = 0.030
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67
P ++ +DEPT+ +DP+ ++ +L ++ K +IVL +HS
Sbjct: 168 PKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHS 207
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 34.8 bits (80), Expect = 0.031
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 27 PPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM-RG 83
P L+ LDEP +D R R+ V+ +++ G + V+ +H +E + R+ IM RG
Sbjct: 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 35.1 bits (81), Expect = 0.032
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 18 QRQ-----SWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 64
QRQ + +PP++ LDE TS +D + + L ++ K ++++
Sbjct: 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 34.7 bits (80), Expect = 0.032
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT-SHSMDECEALCNRLTIMR 82
P ++ LDE TS +DP R L + I+ Q V++ +H +DE AL +R+ +M+
Sbjct: 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK 214
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 34.6 bits (79), Expect = 0.032
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIM 81
D + LDEPT G+DP + ++ K + I++ +H+MD+ + + + +M
Sbjct: 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 34.6 bits (80), Expect = 0.033
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ LDEP S +D R ++ L ++Q+ G + V +H +E A+ +R+ +M
Sbjct: 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN 211
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 34.2 bits (79), Expect = 0.038
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 13 ACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDE 70
A L++ Q P++ LDEP S +DP R + ++SQ+ + Q ++++ SHS+++
Sbjct: 141 ARCLVREQ-------PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 34.2 bits (78), Expect = 0.039
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
+P ++ DEPTS +DP + ++ Q+ + G+++V+ +H M
Sbjct: 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 34.2 bits (78), Expect = 0.043
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P +V LDEPTS +DPIS + L ++ K + ++ +H++ + + ++ + +L
Sbjct: 166 PKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 34.1 bits (79), Expect = 0.048
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P ++ +DEPTS +DPIS ++ ++++ K +IV+ +H+M
Sbjct: 167 KPEVLLMDEPTSALDPISTLKIEELITE-LKKKYTIVIVTHNM 208
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 34.0 bits (78), Expect = 0.054
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
P L+ LDE S +D + + + +L ++ Q G + + +H + ++ C R+ +M +
Sbjct: 169 PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
Query: 86 L---RKRRNCLSFRKEKMRLIL 104
+ LSF+ R +
Sbjct: 229 IVEECDVAQLLSFKHPAGRNLQ 250
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 33.7 bits (77), Expect = 0.063
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 QSWGIGDPP--LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
Q +P L+ LDEP + +D + L +LS + + G +IV++SH ++
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 33.9 bits (78), Expect = 0.071
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 26 DPPLVFLDEPTSGVDPISR----HRLWAVLSQIQKTGQSIVLTSHS 67
D P++ LDEPT +D + L A LS G+++VL +H
Sbjct: 489 DAPILLLDEPTEHLDAETADELLEDLLAALS-----GRTVVLITHH 529
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 33.4 bits (76), Expect = 0.078
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEP S +DPIS ++ ++ ++ K +I++ +H+M +
Sbjct: 167 PEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQ 209
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 33.5 bits (77), Expect = 0.082
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRG 83
P L+ LDEP S +D R L + Q+Q + G + ++ +H +E ++ +R+ +M
Sbjct: 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 33.2 bits (76), Expect = 0.082
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDECE 72
P ++ LDE TS +DP + ++ ++ +++K +++ +H +DE
Sbjct: 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN 208
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 33.0 bits (76), Expect = 0.087
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ LDEP +D R + L ++QK G + V +H +E + +R+ +M
Sbjct: 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN 205
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 32.9 bits (75), Expect = 0.091
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR 77
P L+ LDEP+ G+ PI +++ + Q+++ G +I L + ++ L +R
Sbjct: 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 32.9 bits (75), Expect = 0.094
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
PL LDEPT+ +D R ++ G +VLT+H
Sbjct: 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 32.8 bits (76), Expect = 0.094
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIM 81
+ P L+ LDEP+ G+ P ++ + +++K G +I+L + + +R ++
Sbjct: 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVL 210
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 33.2 bits (76), Expect = 0.095
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ +DEP S +DPIS ++ + +++K +IV+ +H+M +
Sbjct: 172 EPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTHNMQQ 215
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 33.6 bits (77), Expect = 0.096
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P L LDEPT+G+ L VL + G ++V+ H+M
Sbjct: 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
Score = 32.5 bits (74), Expect = 0.20
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRL 78
LDEP+ G+ P H+L V+ +++ G +++L H ++ +L +R+
Sbjct: 502 LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD-EQMISLADRI 547
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 33.2 bits (76), Expect = 0.10
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P ++ +DEP S +DPI+ ++ ++ ++ + +IV+ +HSM
Sbjct: 181 SPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSM 222
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 33.0 bits (75), Expect = 0.11
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT--GQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ LDEP S +D R + ++ + + +I+ +H D+ L ++ IM+
Sbjct: 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK 213
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 32.6 bits (75), Expect = 0.11
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
+ P ++ DEPT +DP + + +I + G ++++ +H
Sbjct: 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 32.7 bits (75), Expect = 0.12
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSM 68
PP + DEPT+ +D +++ R+ +L ++ Q G I+L +H +
Sbjct: 144 PPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 32.6 bits (75), Expect = 0.13
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
LDEP+ G+ P RL L +++ G ++++ H D
Sbjct: 163 LDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED 200
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 32.8 bits (75), Expect = 0.13
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67
+ LDEP + + P + L A+L + +G I++ +HS
Sbjct: 149 IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS 187
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 32.7 bits (74), Expect = 0.13
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P + DE TS +DP S + + ++ + G++IV +H+++E +R+ +M +
Sbjct: 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGK 212
Query: 86 LR 87
+
Sbjct: 213 IV 214
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 30.6 bits (70), Expect = 0.14
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 19 RQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQ 53
+ G P L+FLDE + +D + L +L +
Sbjct: 45 GSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 32.6 bits (75), Expect = 0.14
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 62
QRQ I DPP++ LDE TS +D S + A L ++ K + V
Sbjct: 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFV 192
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 33.0 bits (76), Expect = 0.15
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
L+ LDEPT+ +D + + L ++ K +++++ +H +
Sbjct: 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL 515
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 32.4 bits (74), Expect = 0.15
Identities = 11/45 (24%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ +DEP S +DPI+ ++ ++ +++ +I++ +H+M +
Sbjct: 167 EPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHNMQQ 210
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 32.5 bits (74), Expect = 0.16
Identities = 12/45 (26%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
DP ++ +DEP S +DPI+ ++ ++ ++ + ++V+ +H+M +
Sbjct: 218 DPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQ 261
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 32.4 bits (74), Expect = 0.16
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIM 81
+ P + DEPT+ +D +++ R+ +L I QK ++L +H M L + + +M
Sbjct: 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM 214
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 32.5 bits (74), Expect = 0.17
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ +DEP S +DPI+ ++ ++ ++K I++T H+M +
Sbjct: 167 NPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT-HNMQQ 210
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 32.2 bits (74), Expect = 0.17
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEPT+G+ +L VL ++ G ++V+ H++D
Sbjct: 193 LYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 32.3 bits (73), Expect = 0.17
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P ++ +DEPTS +D ++ + ++++++ +IV+ SH+ + + + + + EL
Sbjct: 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGEL 230
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 32.4 bits (74), Expect = 0.18
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 28 PLVFL-DEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM 68
P V L DEPTS +DP + V+ + + G+++V+ +H M
Sbjct: 171 PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 32.1 bits (73), Expect = 0.19
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+P L+ LDEPT+ +D ++ A++ ++ TG ++V H ++ + C+ + ++ G
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDG 212
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 32.1 bits (73), Expect = 0.22
Identities = 14/62 (22%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTI-MRGN 84
DP ++ +DEP S +DP++ ++ ++ ++ + ++V+ +H+M + + ++ + + G
Sbjct: 198 DPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGG 256
Query: 85 EL 86
EL
Sbjct: 257 EL 258
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 31.9 bits (72), Expect = 0.23
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMR 82
++ DEP + +DP S + L I Q G ++V+T H +D C R+ +R
Sbjct: 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 31.9 bits (72), Expect = 0.24
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEP S +DPIS ++ + ++ K +I++ +H+M +
Sbjct: 180 PDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQ 222
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 31.7 bits (72), Expect = 0.25
Identities = 13/60 (21%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P ++ +DEP S +DP++ + + ++ +++K +I++ +HSM + + + +R+ + +
Sbjct: 168 PTMLLMDEPCSALDPVATNVIENLIQELKKNF-TIIVVTHSMKQAKKVSDRVAFFQSGRI 226
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 31.7 bits (72), Expect = 0.26
Identities = 13/55 (23%), Positives = 32/55 (58%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
P ++ DEPT+ +DP ++ +++ ++ +TG + V+ +H ++ +R+ M
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYM 214
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 31.8 bits (73), Expect = 0.27
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNE 85
+P ++ LDE + D + + L+++ + ++IVL SH + + C+R + +
Sbjct: 165 EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQ 224
Query: 86 LR 87
+R
Sbjct: 225 IR 226
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 31.9 bits (73), Expect = 0.27
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 63
QRQ I D P++ LDE TS +D S + A L ++QK S+V+
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 31.4 bits (72), Expect = 0.28
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 62
+ DP ++ LDE TS +D + + L ++ K SI+
Sbjct: 155 LRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSII 193
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 31.0 bits (71), Expect = 0.29
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67
P VFLDE TS +D S RL +++ G +++ H
Sbjct: 110 PKFVFLDEATSALDEESEDRL---YQLLKELGITVISVGHR 147
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 31.3 bits (71), Expect = 0.33
Identities = 13/46 (28%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDE 70
+P ++ LDEPTS +DP S + ++ +++ K +++ +H+M++
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 31.3 bits (72), Expect = 0.34
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRL 47
G P + LDEPTS +D H+
Sbjct: 157 GPPRWLLLDEPTSALDL--AHQH 177
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.7 bits (72), Expect = 0.36
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 28 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
L+FLDEP +D +L +L ++ G+ I++ SH
Sbjct: 843 ELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH 881
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 30.8 bits (70), Expect = 0.43
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
PL LDEPT+ +D L +L G ++LT+H
Sbjct: 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 31.2 bits (71), Expect = 0.43
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
P ++ +DEP S +DPIS + +++++ K +IV+ +H+M +
Sbjct: 167 PDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQ 209
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 30.4 bits (69), Expect = 0.48
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEP++G+ ++L V+ + G +++L H++D
Sbjct: 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 30.9 bits (70), Expect = 0.49
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDE 70
+P L+ DEP G DPI+ L ++S++ G + V+ SH + E
Sbjct: 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE 206
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 31.3 bits (72), Expect = 0.52
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH------SMDECEALCNRLT 79
D PL+ LDEPT G+D + ++ +L++ + +++++ +H D R+
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTGLEQFD-------RIC 544
Query: 80 IMRGNELR 87
+M ++
Sbjct: 545 VMDNGQII 552
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 30.6 bits (69), Expect = 0.58
Identities = 12/45 (26%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
+P ++ LDEPTS +DP + ++ ++ +++ + +I++ +H+M +
Sbjct: 200 EPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTHNMQQ 243
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 30.8 bits (69), Expect = 0.61
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P ++ +DEP S +DPI+ ++ ++ ++ + +I + +H+M + + + +E
Sbjct: 169 PKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTHNMQQATRVSDFTAFFSTDES 227
Query: 87 R 87
R
Sbjct: 228 R 228
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 30.7 bits (69), Expect = 0.61
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
P ++ DEPT+ +DP + ++ ++ +++K +IVL +H
Sbjct: 164 QPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTH 203
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 30.6 bits (69), Expect = 0.65
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 24 IGDPPLVFLDEPTSGVDPISRH--RLWAVLSQIQKTGQSIVLTSHSMDECEA 73
+ P + LDEP S +D R R W V S+++ G V +H + + A
Sbjct: 150 LAQPKALLLDEPFSRLDVALRDQFRQW-VFSEVRAAGIPTVQVTHDLQDVPA 200
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 30.4 bits (69), Expect = 0.71
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 24 IGDPPLVFLDEPTSGVDPISR-------HRLWAVLSQIQKTGQSIVLTSHSMDECEALCN 76
I P L+ LDEP +D ++R LW Q+ G +++L +H + E A+ +
Sbjct: 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLW------QQHGFTVLLVTHDVSEAVAMAD 202
Query: 77 R 77
R
Sbjct: 203 R 203
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 30.4 bits (68), Expect = 0.74
Identities = 11/56 (19%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ LDEPTS +DP + ++ + + ++++ +H++ + + +R +
Sbjct: 181 NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALF 235
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 30.5 bits (69), Expect = 0.76
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSM 68
P L+ LDEPT GVD + L+ ++ Q+++ ++++ SH +
Sbjct: 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 30.3 bits (69), Expect = 0.76
Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDECEALCNRLTIM 81
P ++ LDEP +G++P L ++++++ +++L H M + +R+ ++
Sbjct: 172 PEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 29.7 bits (68), Expect = 0.81
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
+ +P L+ LDEPT+ +D S L L + T ++L SH
Sbjct: 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYPGT---VILVSH 125
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 30.3 bits (69), Expect = 0.85
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKT-GQSIVLTSHSMDEC 71
QRQ GI +P L+ DEP S +D + ++ +L +Q+ G + + SH +
Sbjct: 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173
Query: 72 EALCNRLTIM 81
+ +R+ +M
Sbjct: 174 RYISDRIAVM 183
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed.
Length = 229
Score = 30.0 bits (68), Expect = 0.91
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 169 TEFK-GRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMD 211
EFK G++E + + G++H + F+ L ++A+ S++
Sbjct: 153 NEFKKGKLEYRADKTGIVHVLFGKSNFTEEDLLENLQAIYESIE 196
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 29.8 bits (68), Expect = 0.91
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ DP L+ LDEP +G+ + +L + S+V+ H M+ ++ +++T++
Sbjct: 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVL 215
>gnl|CDD|220265 pfam09491, RE_AlwI, AlwI restriction endonuclease. This family
includes the AlwI (recognises GGATC), Bsp6I (recognises
GC^NGC), BstNBI (recognises GASTC), PleI(recognises
GAGTC) and MlyI (recognises GAGTC) restriction
endonucleases.
Length = 429
Score = 30.4 bits (69), Expect = 0.93
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 157 EGDLDQLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDY 216
+ D+D++ RI K R++ KD K L +S S +K + +TS ++DY
Sbjct: 92 DNDIDEIVNRILKFRKERLKNKDNIKKLSKEYFEKECYSISDSSSK-KKFETSQSNLKDY 150
Query: 217 SLSDTTLE-----QVFIAFAKGRGQRHPDN 241
+DT +F G+
Sbjct: 151 --ADTFFRYLRYTGLFSIRGNGKLIIINPE 178
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 30.5 bits (69), Expect = 0.94
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QRQ I G+P ++ DE TS +D S + + +I + G+++++ +H +
Sbjct: 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHRLSTVR 656
Query: 73 ALCNRLTIM 81
A C+R+ ++
Sbjct: 657 A-CDRIIVL 664
>gnl|CDD|224627 COG1713, COG1713, Predicted HD superfamily hydrolase involved in
NAD metabolism [Coenzyme metabolism].
Length = 187
Score = 29.6 bits (67), Expect = 0.98
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 129 RGEMQCLGNITYL--KQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKDEHKGLIH 186
R +M L I Y+ K G+GF + K+R+ L L + I++ K + + +H
Sbjct: 113 RKQMTLLDKILYVADKIEPGRGFPGVDKIRQIALKDLNKAIKSALKNTITYLIKKNQPVH 172
Query: 187 YQILDT 192
L+
Sbjct: 173 PWTLEA 178
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 30.0 bits (68), Expect = 1.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
Q+Q IG DP L+ LDEP +G+ + +L + SI++ H M
Sbjct: 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL-AGKHSILVVEHDMGFVR 210
Query: 73 ALCNRLTIM 81
+ +++T++
Sbjct: 211 EIADKVTVL 219
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 29.7 bits (67), Expect = 1.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
P ++ DEPTS +DP + + Q+ + +++V+ +H M + +R M
Sbjct: 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 29.8 bits (67), Expect = 1.4
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 30 VFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
+ LDEPTS +D + + A++ ++ Q+ G +++ H ++ C+ L +RG E+
Sbjct: 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 29.0 bits (66), Expect = 1.5
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWA-VLSQIQKTGQSIVLTSH 66
+P L LDEP SG+D I RL A V++++++ G+S+++ +H
Sbjct: 122 EPDLAILDEPDSGLD-IDALRLVAEVINKLREEGKSVLIITH 162
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 29.8 bits (67), Expect = 1.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTS 65
P L+ LDE +GVD +R L+ +L + V+TS
Sbjct: 1278 PRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTS 1313
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 29.1 bits (66), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 64
+PP++ LDE TS +D + + A L + K +IV+
Sbjct: 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA 193
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 33 DEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
DEPT +D S + A+L Q++ G ++++ +H
Sbjct: 169 DEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 29.6 bits (67), Expect = 2.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
L LDEPT+G+ +L VL ++ G ++V+ H++D
Sbjct: 851 RTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893
Score = 27.3 bits (61), Expect = 9.7
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDE 70
LDEP+ G+ RL L +++ G ++++ H DE
Sbjct: 514 LDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEH--DE 550
>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 771
Score = 29.4 bits (66), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 16 LIQRQSWGIGDPPLVFLDE 34
LI Q+W GDP ++FLDE
Sbjct: 399 LIITQAWKTGDPGVIFLDE 417
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 29.1 bits (66), Expect = 2.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
P L+ LDEPT+ +D S L L + T ++L SH + + R+ ++
Sbjct: 458 PNLLLLDEPTNHLDIESLEALEEALLDFEGT---VLLVSHDRYFLDRVATRIWLVED 511
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 28.7 bits (64), Expect = 2.6
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL--CNRLTIMRGNEL 86
++ LDEP++ +DPI+ + L Q +++L+ H + EA+ C R ++ N++
Sbjct: 159 ILLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRI---EAMLECQRFLVIEENKV 214
Query: 87 RK 88
R+
Sbjct: 215 RQ 216
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 28.9 bits (65), Expect = 2.6
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGN- 84
P L+ LDE S +D + + + +L ++Q + G + + +H + E C R+ +M
Sbjct: 170 PKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229
Query: 85 --ELRKRRNCLSFR 96
E + + L+F
Sbjct: 230 IVETQPVGDKLTFS 243
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 28.7 bits (64), Expect = 2.6
Identities = 9/45 (20%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQ-IQKTGQSIVLTSHSMDE 70
P ++ LDE TS +D ++ + ++ + +++ +++ +H D+
Sbjct: 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 28.9 bits (65), Expect = 2.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 63
QRQ I D P++ LDE TS +D S + A L ++ + ++V+
Sbjct: 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 28.2 bits (64), Expect = 3.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKT 57
++ LDE T+ VDP + + IQKT
Sbjct: 158 SKILVLDEATASVDPETD-------ALIQKT 181
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 28.7 bits (64), Expect = 3.1
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 28 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNELR 87
P++ LDEPT+ +D + R ++ ++ G++ V H +D C+ L ++ +R
Sbjct: 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 28.6 bits (64), Expect = 3.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 64
P + LDEPT+ +D +HRL + ++ + VL
Sbjct: 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA 210
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 29 LVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
L+ LDEP + +D + L +LS++ + G ++V++SH
Sbjct: 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191
>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane].
Length = 1531
Score = 28.7 bits (64), Expect = 3.6
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 154 KLREGDLDQLKERIRTEFKGRVEIKD---------EHKGLIHYQILDTTFSWSVLFAKME 204
KL + + ++E + T+ G + + D E K Y + T ++++ F + E
Sbjct: 1270 KLLDAEGTTVQEGLTTDETGEIVVADLKPGDYQFVETKAPEGYILDATPVNFTIEFNQEE 1329
Query: 205 AVKTSM 210
AVK +
Sbjct: 1330 AVKVTK 1335
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 28.0 bits (63), Expect = 3.7
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSH 66
+ P LV DEPT+ +D S + ++ ++ + G +I++ +H
Sbjct: 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 27.7 bits (61), Expect = 3.7
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWA------VLSQIQKTGQSIVLTSH 66
P ++ LDE TS +D L +L + +++LT++
Sbjct: 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 28.3 bits (64), Expect = 3.8
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQS----IVLTSHSMDECEALCNRLTIM 81
P L+ +DEP + +D + R R +L +++ + I+ SHS+DE L +R+ ++
Sbjct: 146 APELLLMDEPLASLD-LPRKR--ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202
>gnl|CDD|236280 PRK08515, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 222
Score = 28.0 bits (63), Expect = 3.8
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 138 ITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKDEHKGLIHYQILDTTFSWS 197
+ L + + Q L I+L + LK GR K + F +S
Sbjct: 49 TSSLPEDFSQYEFLRIELN--AFNSLK------GFGRASFKTPNN-----PNKKLFFRYS 95
Query: 198 VLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAK 232
++ A +E +K+ I +D +L+ ++ I F K
Sbjct: 96 II-ANLEVLKSIRAIKKDDNLTANNTKKKRIPFGK 129
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 28.4 bits (64), Expect = 4.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 13 ACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS 67
A +L+ + P VFLDE TS +D + RL+ +L + + +++ H
Sbjct: 527 ARLLLHK-------PKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHR 573
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 28.0 bits (63), Expect = 4.3
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
G+ P++ LD+ + +D R A+L I+ Q+ V T+
Sbjct: 208 SGEYPVLLLDDVLAELDL---GRQAALLDAIEGRVQTFVTTTD 247
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 28.1 bits (63), Expect = 4.3
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRH 45
QRQ I D P++ LDE TS +D S
Sbjct: 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQ 513
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 27.8 bits (62), Expect = 4.5
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
I +P ++ LDE TS +D S ++ L +++++ +H + E
Sbjct: 166 IRNPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVE 213
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 27.8 bits (62), Expect = 4.5
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQ-SIVLTSHSMDE 70
P ++ LDE TS +DP +R L ++ +++ +I+ +H + E
Sbjct: 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 28.3 bits (64), Expect = 4.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
LDEPT+G+ +L VL ++ G ++++ H++D
Sbjct: 849 LDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 28.2 bits (63), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
PPL+ LDEP + + P L ++ K Q IV T HS
Sbjct: 291 PPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVST-HSPR 332
>gnl|CDD|233315 TIGR01213, pseudo_Pus10arc, tRNA pseudouridine(54/55) synthase.
Members of this family show twilight-zone similarity to
several predicted RNA pseudouridine synthases. All
trusted members of this family are archaeal. Several
eukaryotic homologs lack N-terminal homology including
two CXXC motifs [Hypothetical proteins, Conserved].
Length = 388
Score = 28.2 bits (63), Expect = 4.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 146 GQGFTLMIK---LREGDLDQLKERIRTEFKGRVEIKDE 180
G+ F L +K R+ DLD L+E I T KG+VE++
Sbjct: 222 GRPFVLEVKEPRYRKIDLDPLEEEINTSGKGKVEVEGL 259
>gnl|CDD|226516 COG4029, COG4029, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 142
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 149 FTLMIKLREGDLDQLKERIRTEFKGRVEIKD 179
F +I E ++ +L ERIR + KD
Sbjct: 40 FGAIIDGPEDEVRKLVERIRELDGNAIFSKD 70
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 27.6 bits (62), Expect = 5.8
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 31 FLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
F+DE +DP + + L I+ + + + SH + E + RL ++
Sbjct: 156 FIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVI 206
>gnl|CDD|220453 pfam09875, DUF2102, Uncharacterized protein conserved in archaea
(DUF2102). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 104
Score = 26.5 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 149 FTLMIKLREGDLDQLKERIRTEFKGRVEIKD 179
F MI E ++D++ E IR + IKD
Sbjct: 33 FGAMITGEEEEVDRVIEEIRKLDPNHIFIKD 63
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 27.7 bits (63), Expect = 6.5
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 32 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
LDEPT+G + I +L VL ++ G ++V+ H++D
Sbjct: 857 LDEPTTGLHFEDI--RKLLEVLHRLVDKGNTVVVIEHNLD 894
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 27.5 bits (61), Expect = 6.6
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QRQ I +P ++ DE TS +D S H + + I G+++++ +H + +
Sbjct: 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK 201
Query: 73 ALCNRLTIMRGNEL 86
+R+ +M +
Sbjct: 202 N-ADRIIVMEKGRI 214
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 27.2 bits (61), Expect = 6.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRL-WAVLSQIQKTGQSIVLTSH 66
LV LDE SG DP+ L A+L ++ + G ++ T+H
Sbjct: 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTH 149
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 27.1 bits (61), Expect = 6.9
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 28 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHS---MDECEAL 74
P+ LDEPT+ +D + ++ G ++ +H + L
Sbjct: 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPGAREL 196
>gnl|CDD|131324 TIGR02271, TIGR02271, conserved domain. This model describes an
uncharacterized domain, sometimes found in association
with a PRC-barrel domain (pfam05239, which is also found
in rRNA processing protein RimM and in a photosynthetic
reaction center complex protein). This domain is found
in proteins from Bacillus subtilis, Deinococcus
radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus,
and several other species. The function is not known.
Length = 115
Score = 26.3 bits (58), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 153 IKLREGDLDQLKERIRT-EFKGRVEIKDEHK 182
+KLR+ LD KE ++T E + E+ E K
Sbjct: 1 LKLRKEQLDVNKEWVQTGEVELGKEVSSEQK 31
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative,
prokaryotic. This family of archaeal and bacterial
proteins is homologous to the eukaryotic translation
intiation factor SUI1 involved in directing the ribosome
to the proper start site of translation by functioning
in concert with eIF-2 and the initiator tRNA-Met
[Protein synthesis, Translation factors].
Length = 101
Score = 26.2 bits (58), Expect = 8.9
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 142 KQRYGQGFTLM--IKLREGDLDQLKERIRTEF-------KGRVEIKDEHKGLI 185
+ R G+G T++ + L + DL +L + ++++ G +EI+ +H+ +
Sbjct: 33 RGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDGVIEIQGDHRDRV 85
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 27.1 bits (60), Expect = 9.0
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ LDEP +D R L + L ++ + + V +H +E + +R+ +M
Sbjct: 148 EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM 204
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 26.5 bits (59), Expect = 9.0
Identities = 11/33 (33%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 17 IQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWA 49
Q W G LV LD P GV R
Sbjct: 35 AQAYVWQTGGDGLVLLDLP--GVGERGRRDREY 65
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 27.1 bits (60), Expect = 9.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 62
G+ P++ +D+ T+ +DP R A+L+ Q+IV
Sbjct: 289 GEAPVLLVDDFTAELDP---RRRGALLALAASLPQAIV 323
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,507,877
Number of extensions: 1171812
Number of successful extensions: 1451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1390
Number of HSP's successfully gapped: 339
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)