RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy859
(247 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 86.4 bits (215), Expect = 1e-20
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P L LDEPTSG+D ++ + +L Q + G +I+++SH+M E E LC+R+ ++
Sbjct: 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 67.9 bits (167), Expect = 5e-14
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR 82
+ + + LD+P +D S+H++ + +I K G I+ + + C+ +
Sbjct: 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD----VNENLH 204
Query: 83 GNEL 86
Sbjct: 205 KYST 208
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 66.5 bits (163), Expect = 3e-13
Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI--QKTGQSIVLTSHSMDECEALCNRLTIM 81
+G P ++ LDEP +G+D I+R L ++L + +++ +H ++E A +++ ++
Sbjct: 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL 236
Query: 82 RGNEL 86
+ +
Sbjct: 237 KDGQS 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 64.9 bits (159), Expect = 1e-12
Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM---- 81
+P ++ LDEP G+D + L ++ + + G++++L SH ++ +R+ ++
Sbjct: 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 215
Query: 82 ------------RGNELRKRRNCLSFRKEKMRLILTFPLCFPSSMDEC-EALCN 122
+ + L R+ ++ F + S DE E +CN
Sbjct: 216 KVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFSM----SDDELLERVCN 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 59.5 bits (145), Expect = 1e-10
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ LDEPT+G+DP+ + +L ++QK G +I++ +H +D C+ + +M
Sbjct: 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 57.7 bits (140), Expect = 3e-10
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
Q P +V LDEP VD RH + + + K +L +H +D
Sbjct: 133 QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKE---GILVTHELDMLN 189
Query: 73 ALCNRLTIMRGNE 85
Sbjct: 190 LYKEYKAYFLVGN 202
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 48.9 bits (117), Expect = 7e-07
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT-SHSMDEC 71
+ Q I + L LD+P+S +D R+ + + ++ + +++ H +
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449
Query: 72 EALCNRLTIMRG 83
+ + +R+ + +G
Sbjct: 450 DYIADRIIVFKG 461
Score = 41.2 bits (97), Expect = 2e-04
Identities = 10/60 (16%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+ + + D+P+S +D R + + ++ K + +++ H + + L + + I+ G
Sbjct: 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYG 212
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 44.9 bits (107), Expect = 8e-06
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDECEALCNRLTIMRGN 84
+ L+ LDEPTS +D ++ + ++L + Q ++V T+H ++ A+ N+ ++
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ 205
Query: 85 EL 86
Sbjct: 206 NF 207
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 45.0 bits (106), Expect = 9e-06
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 23 GIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
G+ L+ LDEPT +D R +L ++ + K ++L SH +
Sbjct: 269 LAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 315
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 44.4 bits (106), Expect = 9e-06
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+P ++ +DEP +GV P H ++ + +++ G + ++ H +D + L +M
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 45.0 bits (107), Expect = 1e-05
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGN 84
+ +DEP++ +D R V+ + ++ + H L +++ + G
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 85 ELRK 88
+
Sbjct: 545 PSKN 548
Score = 44.2 bits (105), Expect = 2e-05
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+ + + DEP+S +D R ++ + + ++ H + + L + + I+ G
Sbjct: 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 42.7 bits (101), Expect = 5e-05
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 18 QRQSWGI-----GDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMDEC 71
Q+Q I +P ++ D+ TS +DP + + +L I ++ G +I+L +H MD
Sbjct: 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227
Query: 72 EALCNRLTIM 81
+ +C+ + ++
Sbjct: 228 KRICDCVAVI 237
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 40.9 bits (96), Expect = 7e-05
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 17 IQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
+ + G+ L+ LDEPT +D R +L ++ + K ++L SH +
Sbjct: 72 LAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDEC 71
+ Q I D + LDEP++ +D R + + + K ++ ++ H +
Sbjct: 406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 465
Query: 72 EALCNRLTIMRG 83
+ + +RL + G
Sbjct: 466 DYVSDRLMVFEG 477
Score = 35.7 bits (83), Expect = 0.012
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+ F DEP+S +D R + ++ + G+S+++ H + + L + + ++ G
Sbjct: 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG 233
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 39.8 bits (94), Expect = 3e-04
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 13 ACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
A +++Q L+ LDEP + +D + L +LS + + G +IV++SH ++
Sbjct: 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTL 197
Query: 73 ALCNRLTIMRG 83
+R +++G
Sbjct: 198 RHAHRAWLLKG 208
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function;
2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Length = 217
Score = 39.6 bits (92), Expect = 3e-04
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 137 NITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKD-EHKGLIHYQ 188
+ + Y L + L + + ++ +G +++ E +G H+
Sbjct: 162 DGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEEEGGSHHH 214
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus}
SCOP: d.14.1.11 d.58.11.2
Length = 191
Score = 37.9 bits (88), Expect = 0.001
Identities = 4/42 (9%), Positives = 16/42 (38%)
Query: 137 NITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIK 178
+ + +G + L + + + + +G+V ++
Sbjct: 150 ALKAEETYTPEGVRFALLLPKPEREGFLRALLDATRGQVALE 191
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 38.4 bits (90), Expect = 0.001
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMRGN 84
D + LDEP++ +D R + + + K ++ ++ H + + + +RL + G
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGE 548
Score = 33.1 bits (76), Expect = 0.082
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSM---DECEALCNRLTIMR 82
F DEP+S +D R ++ V+ ++ G+++++ H + D L + + ++
Sbjct: 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY---LSDVIHVVY 302
Query: 83 GNE 85
G
Sbjct: 303 GEP 305
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 35.6 bits (83), Expect = 0.007
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
+P L+F DEPT +D + R+ + +I + G SIV+ +H +
Sbjct: 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 33.7 bits (77), Expect = 0.045
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 28 PLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLT 64
+ LDEPT +D R +L + +++ Q I++T
Sbjct: 307 ECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 32.2 bits (74), Expect = 0.12
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRG 83
DP L+ LDEP S +D R ++ + + G+S V SH +E +R+ +M+
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQ 214
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 32.7 bits (74), Expect = 0.13
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRGNEL 86
P L+ LDEPT+ +D S L L + + +++ +HS + + L + ++ +
Sbjct: 920 PHLIVLDEPTNYLDRDSLGALSKALKEFEGG---VIIITHSAEFTKNLTEEVWAVKDGRM 976
Query: 87 R 87
Sbjct: 977 T 977
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.8 bits (72), Expect = 0.19
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 31 FLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
F+DE S +D ++ ++ +VL ++++ + IV +H
Sbjct: 308 FIDEGFSSLDTENKEKIASVLKELERLNKVIVFITH 343
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 31.4 bits (72), Expect = 0.22
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRG 83
P L+ LDEP S VD ++ L L +Q+ I+ +H + E L + + +M
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3
Length = 445
Score = 31.4 bits (70), Expect = 0.30
Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 34/239 (14%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR------ 77
IG+ V L E T G I + V + + G + L N
Sbjct: 71 IGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAMEEDWGNGLKL-NEYIQTGK 129
Query: 78 ------LTIMRGNE--------LRKRRNCLSFRKEKMRLI-LTFPLCFPSSMDECEALCN 122
L ++ + ++ N K+K++ I L S ++
Sbjct: 130 GNPREFLKLLYPTDEIIAMIEWMK-DYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVR 188
Query: 123 R----LTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIK 178
L V + L + T Q Y + + + + + +++ ++ E +
Sbjct: 189 LHRPDLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEI 248
Query: 179 DEHKGLIHYQILDTTFSWSVLFAKMEAVKTSMDIVEDYSLSDTTLEQVFIAFAKGRGQR 237
+ + ++ + D L + L + + G +
Sbjct: 249 IPSEYIWAKATASAIEKFTTMLL-------PNDYPSIIKLHEQYLADHAMWAQETFGGK 300
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 31.2 bits (71), Expect = 0.38
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK 56
+ +P ++ LDE TS +D S + A L + ++
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKARE 574
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 30.1 bits (69), Expect = 0.45
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 25 GDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVL 63
P L+ +DEP+ G+ PI ++ V+ +I + G +I+L
Sbjct: 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 30.6 bits (70), Expect = 0.58
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 32 LDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
LDEPT+G+ P RL L ++ G +++ H M
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 29.8 bits (68), Expect = 0.69
Identities = 10/47 (21%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQI-QKTGQSIVLTSHSMD 69
+PP++ D+PT +D + ++ +L ++ ++ G+++V+ +H ++
Sbjct: 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 29.5 bits (67), Expect = 0.83
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 62
P ++ LDE TS +D + + A L+++ +IV
Sbjct: 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIV 244
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 27.5 bits (62), Expect = 3.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 26 DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIV 62
DP +V DE TS +D + + + ++K I+
Sbjct: 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLII 209
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 6.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 161 DQLK---ERI---RTEFKGRVEIKDE 180
D+L E I R E + R++ D
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDA 103
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3 PDB: 2rad_A
Length = 451
Score = 26.7 bits (58), Expect = 7.3
Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNR------ 77
+G +V L E T G + + V + + G + ++ D L +R
Sbjct: 72 VGSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDRALEL-DRYVLTGK 130
Query: 78 ------LTIMRGNE-----LRKRRNCLSFRKEKMRLIL-------TFPLCFPSSMDECEA 119
LT + + L R + K K ++ + + + ++ +A
Sbjct: 131 GNPSQHLTPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNENVYNNIIEYIKA 190
Query: 120 LCNRLTIMVRGEMQCLGNITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKD 179
++L V +++ L +T + + D + +
Sbjct: 191 NNSKLLPRVEEKIKGLIPVTKDMNTFESLTKEEKEKYVLDAKTISALLEENKSYLNGKSK 250
Query: 180 EH 181
E
Sbjct: 251 EF 252
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 26 DPPLVFLDEPTSGVD 40
+PP++ LDE TS +D
Sbjct: 495 NPPILILDEATSALD 509
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.0 bits (61), Expect = 7.6
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 32 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
LDEPT G + + +L VL ++ G ++++ H++D
Sbjct: 832 LDEPTVGLHFEDV--RKLVEVLHRLVDRGNTVIVIEHNLD 869
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 26.4 bits (59), Expect = 8.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 26 DPPLVFLDEPTSGVDP 41
+P ++ DEPTS +DP
Sbjct: 177 EPKIMLFDEPTSALDP 192
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 26.3 bits (59), Expect = 8.9
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVD 40
QRQ I +P ++ LDE T+ +D
Sbjct: 144 QRQRLAIARAFLRNPKILMLDEATASLD 171
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 25.7 bits (56), Expect = 9.1
Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 138 ITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKDEHKG 183
+ +L + T+ ++ GD + +++GR+++ + G
Sbjct: 36 VKWLVRHGSDSVTIFLRDSTGD-----HIQQAKYRGRLKVSHKVPG 76
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.7 bits (60), Expect = 9.2
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 32 LDEPTSG--VDPISRHRLWAVLSQIQKTGQSIVLTSHSMD 69
LDEPT+G VD I RL VL ++ G ++++ H++D
Sbjct: 570 LDEPTTGLHVDDI--ARLLDVLHRLVDNGDTVLVIEHNLD 607
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,699,770
Number of extensions: 216016
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 56
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)