RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy859
(247 letters)
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 67.7 bits (165), Expect = 4e-14
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 22 WGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P ++ +DEP +GV P H ++ + +++ G + ++ H +D + L +M
Sbjct: 164 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 223
Query: 82 R 82
Sbjct: 224 F 224
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 63.8 bits (155), Expect = 7e-13
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 13 ACILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
A +++Q L+ LDEP + +D + L +LS + + G +IV++SH ++
Sbjct: 137 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTL 196
Query: 73 ALCNRLTIMRGNEL 86
+R +++G ++
Sbjct: 197 RHAHRAWLLKGGKM 210
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 63.8 bits (155), Expect = 8e-13
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
++Q IG P L+ +DEP+ G+ PI ++ V+ +I + G +I+L +
Sbjct: 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203
Query: 73 ALCNRLTIMR 82
+ + ++
Sbjct: 204 KVAHYGYVLE 213
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 61.7 bits (150), Expect = 3e-12
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQ-KTGQSIVLTSHSMDECEALCNRLTIMR 82
+ +P ++ +DEP S +D R + A + ++Q K + + +H E + +R+ +M
Sbjct: 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 211
Query: 83 GNEL 86
+L
Sbjct: 212 RGQL 215
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 60.8 bits (147), Expect = 9e-12
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 22 WGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ +P L LDEPTSG+D ++ + +L Q + G +I+++SH+M E E LC+R+ ++
Sbjct: 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 206
Query: 82 RGNEL 86
+
Sbjct: 207 HNGTI 211
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 59.1 bits (143), Expect = 4e-11
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIMRG 83
+P ++ DEPTS +DP + ++ Q+ + G+++V+ +H M + + + +
Sbjct: 165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 224
Query: 84 NEL 86
++
Sbjct: 225 GKI 227
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 56.4 bits (136), Expect = 3e-10
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71
Q+Q I +PP++ D+PT +D + ++ +L ++ + G+++V+ +H ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA 209
Query: 72 EALCNRLTIMRGNEL 86
R+ ++ E+
Sbjct: 210 R-FGERIIYLKDGEV 223
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 53.4 bits (128), Expect = 2e-09
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 20 QSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71
S + + + LD+P +D S+H++ + +I K G I+ + + C
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC 189
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 52.6 bits (126), Expect = 7e-09
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR 82
+P ++ DE TS +DP + + +L I + G +I+L +H MD + +C+ + ++
Sbjct: 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS 215
Query: 83 GNEL 86
EL
Sbjct: 216 NGEL 219
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.1 bits (123), Expect = 1e-08
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 22 WGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEALCNRLTIM 81
+ G+ L+ LDEPT +D R +L ++ + K ++L SH + +A + + I
Sbjct: 221 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 280
Query: 82 RGN 84
N
Sbjct: 281 LEN 283
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 51.0 bits (120), Expect = 3e-08
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 14 CILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEA 73
+ + G+ L+ LDEPT +D R +L ++ + K ++L SH + +A
Sbjct: 290 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 349
Query: 74 LCNRLTIMRGN 84
+ + I N
Sbjct: 350 ADHVIRISLEN 360
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 50.3 bits (120), Expect = 4e-08
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71
QRQ +G P + +DEP S +D R R+ A L ++Q+ G + + +H E
Sbjct: 144 QRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
Query: 72 EALCNRLTIMRGNEL 86
+ +R+ +M L
Sbjct: 204 MTMGDRIAVMNRGVL 218
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 48.7 bits (116), Expect = 1e-07
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QRQ I D P++ LDE TS +D S + A L ++QK ++ ++ +H + E
Sbjct: 157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIE 215
Query: 73 ALCNRLTIMR 82
+ + ++
Sbjct: 216 -QADEIVVVE 224
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 47.6 bits (113), Expect = 4e-07
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QR + D L LD P +D + +++ ++ +L + M+
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 222
Query: 73 ALCNRLTIMRGNEL 86
+++ I+
Sbjct: 223 -KADKILILHQGSS 235
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 44.7 bits (105), Expect = 3e-06
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 24 IGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMR 82
+ DP L+ LDEP S +D R A++ ++Q G ++++ SH + A+ +R+ ++
Sbjct: 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
Query: 83 GNEL 86
+L
Sbjct: 216 KGKL 219
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 44.4 bits (105), Expect = 3e-06
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
Q+Q I +PP++ LDE TS +D S + L + K ++ ++ +H +
Sbjct: 159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTI- 216
Query: 73 ALCNRLTIMRGNEL 86
+++ ++ +
Sbjct: 217 THADKIVVIENGHI 230
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 43.8 bits (103), Expect = 6e-06
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 18 QRQ-----SWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71
QRQ + +P + LDEP S +D R ++ +S++ K G++++ +H E
Sbjct: 135 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194
Query: 72 EALCNRLTIMRGNEL 86
L +++ ++ +
Sbjct: 195 MTLADKIVVLDAGRV 209
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 43.1 bits (101), Expect = 1e-05
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 20 QSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRL 78
+ +P ++ LDEP S +DP ++ +LS + K +++ +H E + +R+
Sbjct: 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRI 198
Query: 79 TIMRGNEL 86
++ +L
Sbjct: 199 AVVMDGKL 206
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 42.2 bits (99), Expect = 2e-05
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 18 QRQSWGIG---DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECEAL 74
QR + +P ++ DE TS +D S H + + +I K G+++++ +H + +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVK-N 203
Query: 75 CNRLTIMRGNEL 86
+R+ +M ++
Sbjct: 204 ADRIIVMEKGKI 215
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 40.6 bits (95), Expect = 7e-05
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSHSMDECE 72
QRQ I +P ++ LDE T+ +D S + L + K G++ ++ +H +
Sbjct: 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLSTIV 202
Query: 73 ALCNRLTIMRGNEL 86
+++ + ++
Sbjct: 203 -DADKIYFIEKGQI 215
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 40.3 bits (94), Expect = 9e-05
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 18 QRQSWGIG-----DPPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDEC 71
QRQ+ + P ++ LD+ TS +D S+ ++ +L + + +S++L + +
Sbjct: 156 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV 215
Query: 72 EALCNRLTIMRGNEL 86
E + + + G +
Sbjct: 216 E-QADHILFLEGGAI 229
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 38.5 bits (89), Expect = 3e-04
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 27 PPLVFLDEPTSGVDPISRHRLWAVLSQIQK-TGQSIVLTSHSMDECEALCNRLTIMRGNE 85
P L+ LDEP S VD ++ L L +Q+ I+ +H + E L + + +M
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 86 L 86
+
Sbjct: 205 I 205
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 32.8 bits (73), Expect = 0.036
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 22 WGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTGQSIVLTSH 66
P LDE + +D + R+ A + + + ++ S
Sbjct: 350 NSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 394
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 29.3 bits (66), Expect = 0.084
Identities = 4/43 (9%), Positives = 15/43 (34%)
Query: 137 NITYLKQRYGQGFTLMIKLREGDLDQLKERIRTEFKGRVEIKD 179
+ + Y L + L + + ++ +G +++
Sbjct: 25 DGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLA 67
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 151 LMIKLREGDLDQLKERIRTEFK-GRVEIKDEHKGLIHYQILDTTFSWSVLFAKMEAV 206
L+ + G + I E K GR+E +++ G IH + F L + A
Sbjct: 132 LLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAF 188
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 25.2 bits (55), Expect = 2.7
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 15 ILIQRQSWGIGDPPLVFLDEPTSGVDPISRHRLWAVLSQIQKTG 58
+ ++ +P FL + S R ++ + +G
Sbjct: 48 VAMEDY---KDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPSSG 88
>d1cb8a1 a.102.3.2 (A:26-335) Chondroitinase AC {Pedobacter
heparinus (Flavobacterium heparinum) [TaxId: 984]}
Length = 310
Score = 25.2 bits (55), Expect = 7.7
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 158 GDLDQLKERIRTEFKGRVE 176
G + + +R+ + K +
Sbjct: 1 GTAELIMKRVMLDLKKPLR 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 904,991
Number of extensions: 42075
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 33
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.8 bits)