BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8591
         (570 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
           From Moorella Thermoacetica
 pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
           From Moorella Thermoacetica
          Length = 557

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 36  GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 71
           G EKF+++KCR +G  PDA V+V TVRALKMHGG P
Sbjct: 309 GAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344


>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
           N10-formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
           N10-formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
           N10-Formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
           N10-Formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
           Synthetase
 pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
           Synthetase
 pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Folate
 pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Folate
 pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
           With Adp And Formylphosphate
 pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
           With Adp And Formylphosphate
 pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Zd9331 And Formylphosphate
 pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Zd9331 And Formylphosphate
 pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Atpgs
 pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Atpgs
          Length = 557

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 36  GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 71
           G EKF+++KCR +G  PDA V+V TVRALKMHGG P
Sbjct: 309 GAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP 344


>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
           Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
           Resolution
 pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
           Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
           Resolution
          Length = 543

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 22/34 (64%)

Query: 36  GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGG 69
           G EKF +   R  G  P+A VLV TVRALK HGG
Sbjct: 295 GAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGG 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,862,195
Number of Sequences: 62578
Number of extensions: 574938
Number of successful extensions: 868
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 3
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)