Query psy8591
Match_columns 570
No_of_seqs 200 out of 827
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 22:42:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13507 formate--tetrahydrofo 100.0 1E-53 2.2E-58 452.4 10.7 158 22-201 314-471 (587)
2 PLN02759 Formate--tetrahydrofo 100.0 1.8E-53 3.9E-58 453.0 10.1 158 23-201 364-522 (637)
3 PRK13506 formate--tetrahydrofo 100.0 2.6E-53 5.7E-58 449.4 10.8 158 22-201 306-464 (578)
4 cd00477 FTHFS Formyltetrahydro 100.0 4E-52 8.6E-57 437.1 10.0 151 21-201 275-426 (524)
5 PF01268 FTHFS: Formate--tetra 100.0 3E-53 6.5E-58 448.5 1.2 153 21-201 291-443 (557)
6 COG2759 MIS1 Formyltetrahydrof 100.0 2E-51 4.3E-56 427.4 7.9 152 21-201 289-440 (554)
7 PTZ00386 formyl tetrahydrofola 100.0 1.4E-50 3E-55 430.4 9.6 150 23-201 359-510 (625)
8 PRK13505 formate--tetrahydrofo 100.0 9.8E-50 2.1E-54 422.1 10.5 150 22-200 293-442 (557)
9 KOG4230|consensus 100.0 1.1E-46 2.3E-51 400.1 8.3 159 21-200 662-820 (935)
10 PTZ00141 elongation factor 1- 91.9 0.16 3.4E-06 54.2 4.0 80 43-149 99-184 (446)
11 TIGR00677 fadh2_euk methylenet 90.3 0.32 7E-06 49.2 4.1 109 19-149 159-278 (281)
12 PRK12735 elongation factor Tu; 86.7 0.27 5.9E-06 51.1 1.0 78 97-178 115-202 (396)
13 PLN00043 elongation factor 1-a 85.8 0.77 1.7E-05 49.2 3.7 52 97-149 132-184 (447)
14 cd01828 sialate_O-acetylestera 83.9 3.1 6.7E-05 36.8 6.1 79 49-150 46-127 (169)
15 TIGR00676 fadh2 5,10-methylene 83.1 1.2 2.6E-05 44.5 3.6 106 19-147 155-272 (272)
16 TIGR00485 EF-Tu translation el 78.4 2.1 4.5E-05 44.6 3.5 48 98-148 116-163 (394)
17 PRK09432 metF 5,10-methylenete 77.9 2.1 4.5E-05 43.9 3.3 108 19-148 174-292 (296)
18 PF02219 MTHFR: Methylenetetra 76.7 0.28 6.1E-06 49.0 -3.2 105 19-147 170-287 (287)
19 PF02171 Piwi: Piwi domain; I 75.4 11 0.00025 37.1 7.5 154 16-186 55-227 (302)
20 PRK10512 selenocysteinyl-tRNA- 73.2 4.3 9.4E-05 45.5 4.5 74 98-179 92-166 (614)
21 COG1149 MinD superfamily P-loo 68.4 5.6 0.00012 41.6 3.8 46 93-151 198-243 (284)
22 COG0532 InfB Translation initi 68.2 5.8 0.00013 44.3 4.1 43 102-154 100-142 (509)
23 PLN02540 methylenetetrahydrofo 68.0 4.4 9.5E-05 45.6 3.2 108 20-149 168-286 (565)
24 PF08002 DUF1697: Protein of u 68.0 3.8 8.1E-05 37.7 2.2 38 137-174 22-60 (137)
25 PRK08645 bifunctional homocyst 67.6 9 0.0002 42.8 5.4 117 17-154 487-611 (612)
26 cd01832 SGNH_hydrolase_like_1 67.1 23 0.00051 31.5 7.0 103 22-151 38-149 (185)
27 PRK05506 bifunctional sulfate 66.4 3.9 8.4E-05 45.4 2.3 48 99-148 146-193 (632)
28 PRK12736 elongation factor Tu; 63.8 7.7 0.00017 40.6 3.8 49 98-149 116-164 (394)
29 cd01822 Lysophospholipase_L1_l 62.9 46 0.00099 29.3 7.9 101 22-150 35-138 (177)
30 PF11265 Med25_VWA: Mediator c 62.3 17 0.00037 36.9 5.7 133 26-172 50-204 (226)
31 cd01834 SGNH_hydrolase_like_2 62.1 58 0.0012 28.7 8.4 110 22-149 32-149 (191)
32 PF13137 DUF3983: Protein of u 61.6 3.8 8.2E-05 31.1 0.8 9 3-11 24-32 (34)
33 COG1456 CdhE CO dehydrogenase/ 61.2 7.8 0.00017 42.4 3.3 87 97-205 193-279 (467)
34 TIGR00475 selB selenocysteine- 59.7 8.3 0.00018 42.9 3.4 73 99-179 92-166 (581)
35 cd04501 SGNH_hydrolase_like_4 58.8 25 0.00054 31.5 5.6 106 22-149 30-140 (183)
36 PLN03127 Elongation factor Tu; 58.3 9 0.0002 41.3 3.3 48 98-148 165-212 (447)
37 COG0191 Fba Fructose/tagatose 58.3 23 0.0005 37.2 6.0 133 55-230 45-231 (286)
38 TIGR01969 minD_arch cell divis 58.1 27 0.00059 32.7 6.0 73 12-122 99-171 (251)
39 cd03113 CTGs CTP synthetase (C 57.6 7.1 0.00015 40.3 2.2 49 11-59 120-211 (255)
40 COG2895 CysN GTPases - Sulfate 57.0 14 0.0003 40.6 4.3 76 97-174 126-210 (431)
41 cd01829 SGNH_hydrolase_peri2 S 56.9 59 0.0013 29.5 7.7 52 96-150 95-146 (200)
42 PRK01077 cobyrinic acid a,c-di 56.4 23 0.0005 38.0 5.8 99 9-149 69-173 (451)
43 PLN03229 acetyl-coenzyme A car 54.4 51 0.0011 38.9 8.4 77 94-179 227-306 (762)
44 cd00537 MTHFR Methylenetetrahy 54.2 7.5 0.00016 38.4 1.8 95 20-121 159-264 (274)
45 PRK00049 elongation factor Tu; 54.1 15 0.00032 38.7 4.0 49 97-148 115-163 (396)
46 PF14106 DUF4279: Domain of un 53.9 28 0.00062 29.9 5.0 102 45-152 12-118 (118)
47 cd04165 GTPBP1_like GTPBP1-lik 52.0 10 0.00022 36.9 2.2 24 98-123 127-150 (224)
48 PRK05306 infB translation init 51.3 10 0.00022 44.2 2.4 21 101-123 381-401 (787)
49 TIGR01287 nifH nitrogenase iro 51.2 83 0.0018 30.7 8.3 97 13-149 107-203 (275)
50 PRK15437 histidine ABC transpo 51.2 11 0.00024 35.9 2.2 103 121-233 39-144 (259)
51 PF00497 SBP_bac_3: Bacterial 50.7 12 0.00027 32.9 2.4 108 121-238 12-127 (225)
52 PRK12317 elongation factor 1-a 50.3 25 0.00054 37.0 4.9 47 100-148 129-175 (425)
53 cd01835 SGNH_hydrolase_like_3 50.0 32 0.00069 31.2 4.9 81 50-150 68-152 (193)
54 cd01884 EF_Tu EF-Tu subfamily. 49.9 27 0.00058 33.3 4.6 48 98-148 106-153 (195)
55 cd01821 Rhamnogalacturan_acety 49.6 60 0.0013 29.7 6.7 106 23-150 34-149 (198)
56 COG1410 MetH Methionine syntha 48.8 9.2 0.0002 44.8 1.6 188 22-236 71-272 (842)
57 PRK15010 ABC transporter lysin 44.8 17 0.00036 34.7 2.4 103 121-232 39-143 (260)
58 cd02040 NifH NifH gene encodes 43.8 95 0.0021 29.8 7.3 47 94-149 158-204 (270)
59 KOG0458|consensus 42.4 24 0.00052 40.4 3.5 60 87-148 289-355 (603)
60 PRK09495 glnH glutamine ABC tr 42.4 18 0.00039 34.0 2.2 95 127-231 43-140 (247)
61 TIGR00379 cobB cobyrinic acid 42.4 46 0.00099 35.9 5.5 81 8-121 64-150 (449)
62 PF02421 FeoB_N: Ferrous iron 41.8 14 0.00031 34.9 1.5 55 104-172 100-154 (156)
63 PF00009 GTP_EFTU: Elongation 41.7 25 0.00055 32.2 3.0 68 97-174 110-182 (188)
64 PRK05380 pyrG CTP synthetase; 41.5 17 0.00038 40.9 2.3 49 10-58 121-210 (533)
65 cd00154 Rab Rab family. Rab G 41.4 46 0.00099 27.6 4.2 47 97-149 90-138 (159)
66 cd00229 SGNH_hydrolase SGNH_hy 41.1 1.4E+02 0.0031 24.6 7.0 108 21-148 33-144 (187)
67 cd01836 FeeA_FeeB_like SGNH_hy 40.8 92 0.002 28.1 6.4 107 23-150 40-154 (191)
68 PF00332 Glyco_hydro_17: Glyco 40.4 32 0.00069 35.7 3.8 77 3-128 204-285 (310)
69 PF01171 ATP_bind_3: PP-loop f 39.6 28 0.0006 32.3 3.0 41 108-154 25-65 (182)
70 cd04112 Rab26 Rab26 subfamily. 39.6 52 0.0011 30.1 4.7 82 110-212 106-187 (191)
71 KOG0132|consensus 39.6 20 0.00043 42.3 2.4 113 37-174 47-165 (894)
72 PRK10859 membrane-bound lytic 39.4 29 0.00062 37.3 3.4 103 121-233 54-160 (482)
73 KOG1145|consensus 39.3 84 0.0018 36.5 7.0 116 16-174 170-311 (683)
74 cd03110 Fer4_NifH_child This p 39.0 1.7E+02 0.0037 26.5 7.9 32 109-149 142-173 (179)
75 PTZ00327 eukaryotic translatio 38.0 17 0.00037 39.7 1.5 69 99-175 160-229 (460)
76 COG1712 Predicted dinucleotide 37.8 32 0.00069 35.8 3.3 76 93-186 68-144 (255)
77 PRK00098 GTPase RsgA; Reviewed 37.7 73 0.0016 32.4 5.8 43 99-149 101-143 (298)
78 KOG0190|consensus 37.7 56 0.0012 36.7 5.4 143 3-171 272-432 (493)
79 cd04139 RalA_RalB RalA/RalB su 36.8 70 0.0015 27.3 4.8 63 100-174 95-157 (164)
80 cd00740 MeTr MeTr subgroup of 36.6 37 0.00081 34.2 3.5 55 98-156 181-240 (252)
81 cd01825 SGNH_hydrolase_peri1 S 36.4 1.7E+02 0.0037 26.0 7.3 105 23-149 24-139 (189)
82 cd01841 NnaC_like NnaC (CMP-Ne 36.4 1.6E+02 0.0034 26.2 7.1 107 21-150 21-133 (174)
83 cd04163 Era Era subfamily. Er 36.1 49 0.0011 27.6 3.7 55 109-174 110-164 (168)
84 PRK00090 bioD dithiobiotin syn 35.9 1.1E+02 0.0024 28.8 6.4 22 9-30 91-112 (222)
85 COG3367 Uncharacterized conser 35.7 87 0.0019 33.9 6.2 41 16-67 216-264 (339)
86 COG0050 TufB GTPases - transla 35.2 28 0.00061 37.7 2.5 73 99-179 117-201 (394)
87 PF07005 DUF1537: Protein of u 34.9 13 0.00029 35.3 0.1 131 87-250 10-149 (223)
88 PF04263 TPK_catalytic: Thiami 34.7 17 0.00038 33.0 0.8 38 10-56 3-41 (123)
89 PTZ00391 transport protein par 34.7 52 0.0011 32.1 4.0 70 3-119 70-140 (168)
90 CHL00071 tufA elongation facto 34.5 34 0.00073 36.2 3.0 49 97-148 115-163 (409)
91 cd00881 GTP_translation_factor 34.3 52 0.0011 28.7 3.7 65 101-174 106-182 (189)
92 COG0216 PrfA Protein chain rel 33.9 31 0.00067 37.4 2.6 79 82-167 79-161 (363)
93 cd01827 sialate_O-acetylestera 33.9 1.8E+02 0.0039 26.1 7.1 18 133-150 134-151 (188)
94 KOG2638|consensus 33.8 37 0.00081 37.9 3.2 79 63-156 106-187 (498)
95 PF02818 PPAK: PPAK motif; In 33.4 35 0.00076 25.1 2.0 18 336-356 2-19 (28)
96 PRK13232 nifH nitrogenase redu 32.7 2.1E+02 0.0045 28.2 7.8 96 11-148 106-202 (273)
97 PRK05632 phosphate acetyltrans 31.4 56 0.0012 37.2 4.2 55 6-61 61-115 (684)
98 cd02037 MRP-like MRP (Multiple 31.4 2.2E+02 0.0047 25.8 7.2 52 99-151 110-162 (169)
99 PF13829 DUF4191: Domain of un 31.2 85 0.0019 32.1 5.0 87 20-145 97-183 (224)
100 PLN02881 tetrahydrofolylpolygl 31.0 1.6E+02 0.0035 33.3 7.5 90 20-154 156-245 (530)
101 cd04657 Piwi_ago-like Piwi_ago 30.6 1.5E+02 0.0033 31.8 7.0 120 50-186 216-352 (426)
102 TIGR03597 GTPase_YqeH ribosome 30.6 77 0.0017 33.2 4.8 84 55-149 28-126 (360)
103 cd01861 Rab6 Rab6 subfamily. 30.4 1E+02 0.0022 26.5 4.7 68 95-174 88-157 (161)
104 cd04138 H_N_K_Ras_like H-Ras/N 30.4 1.3E+02 0.0029 25.4 5.4 46 97-149 90-138 (162)
105 PF03928 DUF336: Domain of unk 30.0 68 0.0015 28.8 3.8 39 134-172 10-50 (132)
106 PLN03126 Elongation factor Tu; 29.8 47 0.001 36.5 3.2 48 98-148 185-232 (478)
107 PF06418 CTP_synth_N: CTP synt 28.9 24 0.00052 37.0 0.8 51 9-59 119-212 (276)
108 PRK15007 putative ABC transpor 28.8 51 0.0011 30.6 2.8 100 121-230 34-134 (243)
109 cd03174 DRE_TIM_metallolyase D 28.8 1.3E+02 0.0029 28.8 5.7 156 9-182 18-185 (265)
110 cd02117 NifH_like This family 28.5 3.7E+02 0.0081 25.4 8.5 47 94-149 158-204 (212)
111 PRK13655 phosphoenolpyruvate c 28.4 1.4E+02 0.0031 33.6 6.6 102 85-199 170-282 (494)
112 TIGR02034 CysN sulfate adenyly 28.4 79 0.0017 33.5 4.5 49 98-148 121-169 (406)
113 cd01993 Alpha_ANH_like_II This 28.1 87 0.0019 28.2 4.1 39 110-154 29-67 (185)
114 TIGR01096 3A0103s03R lysine-ar 28.1 51 0.0011 30.6 2.7 97 125-231 41-140 (250)
115 KOG1144|consensus 27.9 62 0.0013 38.8 3.8 29 35-68 548-576 (1064)
116 PLN02845 Branched-chain-amino- 27.8 16 0.00034 37.9 -0.7 87 33-148 30-122 (336)
117 COG1492 CobQ Cobyric acid synt 27.7 1.2E+02 0.0026 34.2 5.8 26 7-33 111-136 (486)
118 cd00502 DHQase_I Type I 3-dehy 27.6 1.2E+02 0.0026 29.4 5.2 77 55-149 56-145 (225)
119 PF09651 Cas_APE2256: CRISPR-a 27.5 85 0.0018 28.9 4.0 71 83-161 61-132 (136)
120 TIGR03176 AllC allantoate amid 27.2 58 0.0013 34.2 3.2 59 97-163 4-62 (406)
121 PRK10797 glutamate and asparta 26.8 64 0.0014 32.4 3.3 103 121-232 53-163 (302)
122 KOG1615|consensus 26.7 63 0.0014 33.2 3.2 70 92-173 111-189 (227)
123 COG1703 ArgK Putative periplas 26.6 41 0.0009 36.0 2.0 78 87-184 179-259 (323)
124 PF07755 DUF1611: Protein of u 26.5 63 0.0014 34.1 3.3 74 49-150 212-289 (301)
125 CHL00198 accA acetyl-CoA carbo 26.4 2.8E+02 0.0062 29.7 8.0 29 94-125 139-167 (322)
126 PRK08195 4-hyroxy-2-oxovalerat 25.9 1.2E+02 0.0026 31.8 5.2 29 12-40 27-55 (337)
127 TIGR02432 lysidine_TilS_N tRNA 25.9 82 0.0018 28.9 3.6 40 109-154 26-65 (189)
128 PF01261 AP_endonuc_2: Xylose 25.8 94 0.002 27.7 3.9 68 86-157 62-135 (213)
129 PF06574 FAD_syn: FAD syntheta 25.6 22 0.00047 33.4 -0.2 39 109-154 105-144 (157)
130 PLN02714 thiamin pyrophosphoki 25.6 47 0.001 33.0 2.1 41 11-56 9-59 (229)
131 PHA00028 rep RNA replicase, be 25.2 44 0.00096 38.0 2.0 67 10-107 107-182 (561)
132 PF09598 Stm1_N: Stm1; InterP 24.6 32 0.00069 29.2 0.7 17 258-274 8-25 (68)
133 cd01830 XynE_like SGNH_hydrola 24.5 1.9E+02 0.0041 26.8 5.8 110 21-147 37-155 (204)
134 PRK07535 methyltetrahydrofolat 24.4 1.5E+02 0.0033 30.1 5.5 53 98-156 176-230 (261)
135 TIGR03598 GTPase_YsxC ribosome 24.2 1.2E+02 0.0025 27.6 4.2 37 109-149 128-164 (179)
136 COG1473 AbgB Metal-dependent a 24.2 2.5E+02 0.0055 30.5 7.3 93 49-174 246-340 (392)
137 PRK12891 allantoate amidohydro 24.1 97 0.0021 32.3 4.1 59 97-163 11-69 (414)
138 cd00019 AP2Ec AP endonuclease 24.0 1.2E+02 0.0027 29.5 4.6 69 83-154 72-143 (279)
139 cd01838 Isoamyl_acetate_hydrol 24.0 1.7E+02 0.0038 25.9 5.2 17 133-149 142-158 (199)
140 COG1797 CobB Cobyrinic acid a, 23.6 1.7E+02 0.0036 32.9 5.9 96 10-149 67-171 (451)
141 TIGR00483 EF-1_alpha translati 23.4 1.2E+02 0.0027 32.0 4.8 48 99-148 130-177 (426)
142 cd07492 Peptidases_S8_8 Peptid 22.9 2.7E+02 0.0059 26.2 6.5 16 228-243 182-197 (222)
143 cd01983 Fer4_NifH The Fer4_Nif 22.8 54 0.0012 25.2 1.6 54 6-64 18-71 (99)
144 TIGR02995 ectoine_ehuB ectoine 22.6 89 0.0019 30.3 3.3 98 125-231 49-153 (275)
145 cd02064 FAD_synthetase_N FAD s 22.6 1.1E+02 0.0024 28.8 3.8 47 101-154 90-137 (180)
146 COG5329 Phosphoinositide polyp 22.2 1.4E+02 0.0029 34.5 5.0 104 96-232 293-397 (570)
147 PRK14665 mnmA tRNA-specific 2- 22.2 95 0.0021 33.1 3.7 40 109-154 28-67 (360)
148 PRK02412 aroD 3-dehydroquinate 22.0 1.6E+02 0.0036 29.4 5.1 43 99-149 125-167 (253)
149 PHA00520 packaging NTPase P4 22.0 3E+02 0.0066 29.9 7.2 115 28-171 163-277 (330)
150 PRK15467 ethanolamine utilizat 21.9 93 0.002 28.2 3.1 54 110-176 91-144 (158)
151 cd00453 FTBP_aldolase_II Fruct 21.6 1.6E+02 0.0034 32.0 5.1 57 52-120 38-94 (340)
152 cd08768 Cdc6_C Winged-helix do 21.3 42 0.00091 27.3 0.7 24 127-150 20-43 (87)
153 PRK11235 bifunctional antitoxi 21.3 50 0.0011 28.8 1.2 40 97-154 11-50 (80)
154 cd01820 PAF_acetylesterase_lik 21.1 2.4E+02 0.0053 26.4 5.8 79 49-149 87-168 (214)
155 PRK10606 btuE putative glutath 21.1 1.5E+02 0.0033 28.7 4.5 56 109-179 56-112 (183)
156 cd01866 Rab2 Rab2 subfamily. 21.0 2.8E+02 0.0061 24.5 5.9 47 97-149 94-142 (168)
157 PRK05124 cysN sulfate adenylyl 20.9 1.5E+02 0.0032 32.5 4.9 46 100-147 150-195 (474)
158 PF04221 RelB: RelB antitoxin; 20.9 51 0.0011 27.9 1.1 42 97-156 11-52 (83)
159 cd06598 GH31_transferase_CtsZ 20.8 2.5E+02 0.0053 28.9 6.2 49 97-154 236-287 (317)
160 PF09079 Cdc6_C: CDC6, C termi 20.8 68 0.0015 26.5 1.9 23 127-149 13-35 (85)
161 PRK13235 nifH nitrogenase redu 20.8 4.5E+02 0.0098 25.8 7.8 29 93-121 158-186 (274)
162 TIGR02384 RelB_DinJ addiction 20.6 49 0.0011 28.5 1.0 40 97-154 12-51 (83)
163 cd01883 EF1_alpha Eukaryotic e 20.4 1.5E+02 0.0033 28.3 4.3 50 98-148 125-175 (219)
164 PRK05927 hypothetical protein; 20.4 1.6E+02 0.0035 31.2 4.9 45 139-194 190-234 (350)
165 PRK08187 pyruvate kinase; Vali 20.4 59 0.0013 36.3 1.8 45 12-60 369-425 (493)
166 cd02907 Macro_Af1521_BAL_like 20.3 2E+02 0.0044 26.8 5.1 55 86-145 92-147 (175)
167 TIGR00231 small_GTP small GTP- 20.2 2.4E+02 0.0052 23.0 4.9 47 93-148 92-138 (161)
168 TIGR02016 BchX chlorophyllide 20.1 5.7E+02 0.012 26.2 8.6 44 94-150 164-209 (296)
169 PRK14527 adenylate kinase; Pro 20.1 4.9E+02 0.011 24.2 7.5 105 23-147 85-191 (191)
170 cd01833 XynB_like SGNH_hydrola 20.1 5.9E+02 0.013 22.2 7.7 78 49-148 38-115 (157)
No 1
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1e-53 Score=452.35 Aligned_cols=158 Identities=32% Similarity=0.479 Sum_probs=152.2
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
+||||||||||||||||||||||||.+||+|||+||||||||||||||++...+|+||+++|.+||+++|++||+||.||
T Consensus 314 adyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~H 393 (587)
T PRK13507 314 ADYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHH 393 (587)
T ss_pred CCeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhccccCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhcc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVES 181 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~ 181 (570)
|+|+++ ||+|+ +||||+| .+|+++|| ++||++|+++|+++++++ +|+.++.|+.+||+.+ +
T Consensus 394 i~n~~~-fg~pv-VVaiN~F-~~Dt~~Ei------~~l~~~~~~~g~~~~v~~----~wa~GGeGa~eLA~~V------v 454 (587)
T PRK13507 394 IGTVKK-SGINP-VVCINAF-YTDTHAEI------AIVRRLAEQAGARVAVSR----HWEKGGEGALELADAV------I 454 (587)
T ss_pred HHHHHH-cCCCe-EEEeCCC-CCCCHHHH------HHHHHHHHHcCCCEEEec----hhhccchhHHHHHHHH------H
Confidence 999999 99999 9999999 99999999 999999999999999998 9999999999999999 7
Q ss_pred ccccccCCCCcccccccccc
Q psy8591 182 RQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 182 r~~des~~~~~Fe~~y~~~~ 201 (570)
+++++ .+.|+|+|++-+
T Consensus 455 ~a~e~---~s~fk~LYd~~~ 471 (587)
T PRK13507 455 DACNE---PNDFKFLYPLEM 471 (587)
T ss_pred HHhhC---cCCCcccCCCCC
Confidence 88885 267999999753
No 2
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=1.8e-53 Score=452.96 Aligned_cols=158 Identities=29% Similarity=0.446 Sum_probs=151.9
Q ss_pred cEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHH
Q psy8591 23 AYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQF 102 (570)
Q Consensus 23 DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHI 102 (570)
||||||||||||||||||||||||.+||+|||+||||||||||||||++.++||+||+++|.+||+++|++||+||.|||
T Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvRALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi 443 (637)
T PLN02759 364 GFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHI 443 (637)
T ss_pred CeEEEecccCCCCchhheecccccccCCCCCEEEEEeehHHHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC-CceeeeCCCCceEeeeccCchhhhcccCcchhcc
Q psy8591 103 SPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG-LFFEVTNPSGVVVSAVDFGSGELSNILPGFLVES 181 (570)
Q Consensus 103 eNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG-v~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~ 181 (570)
+|+++ ||+|+ +||||+| .+|+++|| ++||++|+++| +.+++++ +|+.|+.||.|||+.+ +
T Consensus 444 ~n~~~-fg~pv-VVaiN~F-~~Dt~~Ei------~~v~~~~~~~ga~~~~~~~----~wa~GGeGa~eLA~~V------v 504 (637)
T PLN02759 444 ENTKS-YGVNV-VVAINMF-ATDTEAEL------EAVRQAALAAGAFDAVLCT----HHAHGGKGAVDLGEAV------Q 504 (637)
T ss_pred HHHHH-cCCCe-EEEecCC-CCCCHHHH------HHHHHHHHHcCCCcEEEec----hhhcccHHHHHHHHHH------H
Confidence 99999 99999 9999999 99999999 99999999999 5999998 9999999999999999 7
Q ss_pred ccccccCCCCcccccccccc
Q psy8591 182 RQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 182 r~~des~~~~~Fe~~y~~~~ 201 (570)
+++++ ..++|+|+|++-+
T Consensus 505 ~a~e~--~~s~fk~LYd~~~ 522 (637)
T PLN02759 505 KACEG--NSQPFKFLYPLDI 522 (637)
T ss_pred HHHhc--CCCCccccCCCCC
Confidence 88885 3468999999754
No 3
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=2.6e-53 Score=449.39 Aligned_cols=158 Identities=25% Similarity=0.334 Sum_probs=151.5
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
+||||||||||||||||||||||||.+||+|||+||||||||||||||+....+|+||+++|.+||+++|++||+||.||
T Consensus 306 aDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~~g~pl~~~l~~en~~al~~G~~NL~~H 385 (578)
T PRK13506 306 ADYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQALPDSINAPDQARLEAGFANLKWH 385 (578)
T ss_pred cCeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcccCcccchhccccCHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH-hCCceeeeCCCCceEeeeccCchhhhcccCcchhc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF-VGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVE 180 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~-lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~ 180 (570)
|+|+++ ||+|+ +||||+| .+|+++|| ++|+++|++ .|+.+++++ +|+.|+.||.|||+.+
T Consensus 386 i~n~~~-fg~pv-VVaiN~F-~~Dt~~Ei------~~~~~~~~~~~~~~~~~~~----~wa~GGeGa~eLA~~V------ 446 (578)
T PRK13506 386 INNVAQ-YGLPV-VVAINRF-PTDTDEEL------EWLKEAVLLTGAFGCEISE----AFAQGGEGATALAQAV------ 446 (578)
T ss_pred HHHHHH-cCCCe-EEEecCC-CCCCHHHH------HHHHHHHHHcCCCcEEEec----hhhccchhHHHHHHHH------
Confidence 999999 99999 9999999 99999999 999999999 799999999 9999999999999999
Q ss_pred cccccccCCCCcccccccccc
Q psy8591 181 SRQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 181 ~r~~des~~~~~Fe~~y~~~~ 201 (570)
++++++ .++|+|+|++-+
T Consensus 447 v~a~e~---~s~fk~LYd~~~ 464 (578)
T PRK13506 447 VRACEQ---PSQFKLLYPDEM 464 (578)
T ss_pred HHHhhC---cCCCcccCCCCC
Confidence 788885 267999999654
No 4
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=4e-52 Score=437.14 Aligned_cols=151 Identities=32% Similarity=0.386 Sum_probs=143.3
Q ss_pred cccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccc-cCChHHHHhhhhchH
Q psy8591 21 HIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYT-EVSTSTEHQGCIKGR 99 (570)
Q Consensus 21 ~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~-eENldaLekG~aNL~ 99 (570)
..||||||||||||||||||||||||.+||+|||+||||||||||||||+. .+++. +||+++|++||+||.
T Consensus 275 laDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~--------~~~l~~~en~~al~~G~~NL~ 346 (524)
T cd00477 275 LADYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVP--------KVTLGLEENLEALEKGFANLR 346 (524)
T ss_pred hcCeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCC--------cccCCCccCHHHHHhHHHHHH
Confidence 458999999999999999999999999999999999999999999999998 46777 999999999999999
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchh
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLV 179 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~ 179 (570)
|||+|+++ ||+|+ +||||+| .+|+++|| ++||++|+++|+++++++ +|+.++.||.+||+.+
T Consensus 347 ~Hi~n~~~-fg~p~-VVaiN~F-~~Dt~~Ei------~~v~~~~~~~g~~~~~~~----~~~~GG~Ga~eLA~~V----- 408 (524)
T cd00477 347 KHIENIKK-FGVPV-VVAINKF-STDTDAEL------ALVRKLAEEAGAFVAVSE----HWAEGGKGAVELAEAV----- 408 (524)
T ss_pred HHHHHHHH-cCCCe-EEEecCC-CCCCHHHH------HHHHHHHHHcCCCEEEeh----hhhhhhhhHHHHHHHH-----
Confidence 99999999 99999 9999999 99999999 999999999999999998 9999999999999999
Q ss_pred ccccccccCCCCcccccccccc
Q psy8591 180 ESRQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 180 ~~r~~des~~~~~Fe~~y~~~~ 201 (570)
++++++ .++|+|+|++-+
T Consensus 409 -i~a~e~---~s~fk~LY~~~~ 426 (524)
T cd00477 409 -IEACEQ---PSEFKFLYDLED 426 (524)
T ss_pred -HHHhcC---CCCCccccCCCC
Confidence 788875 268999999764
No 5
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=3e-53 Score=448.45 Aligned_cols=153 Identities=31% Similarity=0.373 Sum_probs=125.1
Q ss_pred cccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHH
Q psy8591 21 HIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRG 100 (570)
Q Consensus 21 ~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~k 100 (570)
..||||||||||||||||||||||||.+||+|||||||||+||||||||+. .++|.+||+++|++||+||.|
T Consensus 291 l~dyvvTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~--------~~~l~~eNl~al~~G~~NL~r 362 (557)
T PF01268_consen 291 LADYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVA--------KDDLNEENLEALEKGFANLER 362 (557)
T ss_dssp HSSEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT----------GGGTTS--HHHHHHHHHHHHH
T ss_pred hcceeecccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCC--------ccccCccCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999997 578999999999999999999
Q ss_pred HHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhc
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVE 180 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~ 180 (570)
||+|+++ ||+|+ +||||+| .+|+++|| ++||++|+++|+++++++ +|+.|+.||.+||+.+
T Consensus 363 HIeNik~-fGvpv-VVAIN~F-~tDT~aEi------~~I~~~~~~~Gv~~avs~----~wa~GGeGa~eLA~~V------ 423 (557)
T PF01268_consen 363 HIENIKK-FGVPV-VVAINRF-PTDTDAEI------ELIRELCEELGVRAAVSE----HWAKGGEGAVELAEAV------ 423 (557)
T ss_dssp HHHHHHC-TT--E-EEEEE---TTS-HHHH------HHHHHHCCCCCEEEEEC-----HHHHGGGGCHHHHHHH------
T ss_pred HHHHHHh-cCCCe-EEEecCC-CCCCHHHH------HHHHHHHHhCCCCEEEec----hhhcccccHHHHHHHH------
Confidence 9999999 99999 9999999 99999999 999999999999999998 9999999999999999
Q ss_pred cccccccCCCCcccccccccc
Q psy8591 181 SRQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 181 ~r~~des~~~~~Fe~~y~~~~ 201 (570)
++++++. ...+|+|+|++-+
T Consensus 424 v~a~ee~-~~~~fk~LY~l~~ 443 (557)
T PF01268_consen 424 VEACEEE-EPSNFKPLYDLED 443 (557)
T ss_dssp HHH-HHH-S------SS-TTS
T ss_pred HHHhhcc-CCCCcCcccCCcc
Confidence 8888331 4689999999754
No 6
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-51 Score=427.44 Aligned_cols=152 Identities=32% Similarity=0.382 Sum_probs=146.5
Q ss_pred cccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHH
Q psy8591 21 HIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRG 100 (570)
Q Consensus 21 ~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~k 100 (570)
..||||||||||||||||||||||||.+||+|||||||||+||||||||++ +++|.+||+++|++||+||.|
T Consensus 289 L~dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~--------~~~l~~Env~avk~G~aNL~~ 360 (554)
T COG2759 289 LADYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVP--------KEDLTEENVDAVKKGFANLLK 360 (554)
T ss_pred hcCeEEEecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCC--------hHHhcchhHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999998 799999999999999999999
Q ss_pred HHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhc
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVE 180 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~ 180 (570)
||+||++ ||+|+ +||||+| .+|+++|| ..|+++|.++|+.++++| ||+.++.||.|||+.+
T Consensus 361 Hi~Nikk-fgvp~-VVAIN~F-~tDt~~Ei------~~i~~~~~~~gv~~~ls~----vwakGg~Gg~eLA~kV------ 421 (554)
T COG2759 361 HIENIKK-FGVPV-VVAINKF-PTDTEAEI------AAIEKLCEEHGVEVALSE----VWAKGGEGGIELAKKV------ 421 (554)
T ss_pred HHHHHHH-cCCCe-EEEeccC-CCCCHHHH------HHHHHHHHHcCCceeehh----hhhccCccHHHHHHHH------
Confidence 9999998 99999 9999999 89999999 999999999999999999 9999999999999999
Q ss_pred cccccccCCCCcccccccccc
Q psy8591 181 SRQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 181 ~r~~des~~~~~Fe~~y~~~~ 201 (570)
+.++++ ....|.|+|+.-+
T Consensus 422 v~~~~~--~~~~f~~lYd~~~ 440 (554)
T COG2759 422 VEAIEQ--NDSEFKRLYDVED 440 (554)
T ss_pred HHHHhC--CcccceeecccCC
Confidence 899998 5589999999754
No 7
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=1.4e-50 Score=430.37 Aligned_cols=150 Identities=31% Similarity=0.339 Sum_probs=142.2
Q ss_pred cEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHH
Q psy8591 23 AYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQF 102 (570)
Q Consensus 23 DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHI 102 (570)
||||||||||||||||||||||||.+||+|||+||||||||||||||++ ...+.+||+++|++||+||.|||
T Consensus 359 dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK~hGG~~--------~~~l~~enl~al~~G~~NL~~Hi 430 (625)
T PTZ00386 359 GFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRALKFHGGVE--------PVVAGKENLEAVRKGLSNLQRHI 430 (625)
T ss_pred CeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHHHHhCCCC--------ccccCccCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998 46777899999999999999999
Q ss_pred HhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHH-HhC-CceeeeCCCCceEeeeccCchhhhcccCcchhc
Q psy8591 103 SPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCL-FVG-LFFEVTNPSGVVVSAVDFGSGELSNILPGFLVE 180 (570)
Q Consensus 103 eNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~-~lG-v~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~ 180 (570)
+|+++ ||+|+ +||||+| .+|+++|| ++||++|+ ++| +.+++++ +|+.|+.||.|||+.+
T Consensus 431 en~~~-fgvpv-VVAIN~F-~tDT~~Ei------~~i~~~~~~~~ga~~~~~s~----~~a~GG~Ga~eLA~~V------ 491 (625)
T PTZ00386 431 QNIRK-FGVPV-VVALNKF-STDTDAEL------ELVKELALQEGGAADVVVTD----HWAKGGAGAVDLAQAL------ 491 (625)
T ss_pred HHHHH-cCCCe-EEEecCC-CCCCHHHH------HHHHHHHHHhcCCccEEEec----hhhccchhHHHHHHHH------
Confidence 99999 99999 9999999 99999999 99999999 999 6999998 9999999999999999
Q ss_pred cccccccCCCCcccccccccc
Q psy8591 181 SRQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 181 ~r~~des~~~~~Fe~~y~~~~ 201 (570)
++++++ ..++|+|+|++-+
T Consensus 492 v~a~~~--~~s~fk~LYd~~~ 510 (625)
T PTZ00386 492 IRVTEN--VPSNFKLLYPLDA 510 (625)
T ss_pred HHHHhc--CCCCCcccCCCCC
Confidence 888886 3478999999653
No 8
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=9.8e-50 Score=422.06 Aligned_cols=150 Identities=29% Similarity=0.391 Sum_probs=142.9
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
+||||||||||||||||||||||||.+||+|||+||||||||||||||++ .++|.+||++++++||.||+||
T Consensus 293 adyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~--------~~~l~~en~Eal~sGl~NL~RH 364 (557)
T PRK13505 293 ADYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVA--------KDDLKEENVEALKKGFANLERH 364 (557)
T ss_pred CCEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCC--------hhhccccCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988 5889999999999999999999
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhcc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVES 181 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~ 181 (570)
|+|+++ ||+|+ +|+|||| .+|+++|| +.|+++|+++|+.+++++ +|+.|+.|+.+|++.+ +
T Consensus 365 Ienvr~-FGvPv-VVAINKF-d~DTe~Ei------~~I~~~c~e~Gv~va~~~----~~~~Gg~Gai~LA~aV------v 425 (557)
T PRK13505 365 IENIRK-FGVPV-VVAINKF-VTDTDAEI------AALKELCEELGVEVALSE----VWAKGGEGGVELAEKV------V 425 (557)
T ss_pred HHHHHH-cCCCE-EEEEeCC-CCCCHHHH------HHHHHHHHHcCCCEEEec----ccccCCcchHHHHHHH------H
Confidence 999999 99999 9999999 99999999 999999999999999998 9999999999999999 7
Q ss_pred ccccccCCCCccccccccc
Q psy8591 182 RQTDESHDMGHFEYGFPSM 200 (570)
Q Consensus 182 r~~des~~~~~Fe~~y~~~ 200 (570)
+++++ ...+|+|+|++-
T Consensus 426 eA~~~--~~s~f~~lY~~d 442 (557)
T PRK13505 426 ELIEE--GESNFKPLYDDE 442 (557)
T ss_pred HHHhc--CCCCCceecCCC
Confidence 77775 457899999863
No 9
>KOG4230|consensus
Probab=100.00 E-value=1.1e-46 Score=400.11 Aligned_cols=159 Identities=38% Similarity=0.499 Sum_probs=152.8
Q ss_pred cccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHH
Q psy8591 21 HIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRG 100 (570)
Q Consensus 21 ~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~k 100 (570)
.++||||||||++|||+|||||||||+|||.||+||||||+||||+|||++.+.||+|||++|.+||+|.+++||+||.|
T Consensus 662 eagyvvteagf~~dmgmekffnikcr~sgl~p~avvlvatvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k 741 (935)
T KOG4230|consen 662 EAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLVATVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVK 741 (935)
T ss_pred cCceEEEecccccccchhheeeeeeecCCCCCceEEEeehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhc
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVE 180 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~ 180 (570)
||+|+++ ||+|+ +||||+| .+|++.|| +.+|+.+++.|.+.++.. |=|+-++-|..+||..+
T Consensus 742 ~i~n~~~-fgipv-vvain~f-~tds~~ei------~~ir~~al~aga~dav~s---nhwaeggkgai~la~av------ 803 (935)
T KOG4230|consen 742 QIENIKK-FGIPV-VVAINKF-KTDSEKEI------EAIREAALEAGAFDAVTS---NHWAEGGKGAIELAKAV------ 803 (935)
T ss_pred HHHhHHh-cCCCE-EEEeccc-cCCCHHHH------HHHHHHHHhcCCcccccc---cchhhcCccHHHHHHHH------
Confidence 9999999 99999 9999999 99999999 999999999999999984 68999999999999999
Q ss_pred cccccccCCCCccccccccc
Q psy8591 181 SRQTDESHDMGHFEYGFPSM 200 (570)
Q Consensus 181 ~r~~des~~~~~Fe~~y~~~ 200 (570)
+++|++ -+.|+|+|..-
T Consensus 804 ~~a~~~---~s~f~llydv~ 820 (935)
T KOG4230|consen 804 ITACDS---PSKFRLLYDVN 820 (935)
T ss_pred HHHhcC---CcceeEEEecC
Confidence 899996 48999999864
No 10
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=91.95 E-value=0.16 Score=54.17 Aligned_cols=80 Identities=23% Similarity=0.185 Sum_probs=52.0
Q ss_pred cccccCCC-CCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhh---hchHHHHHhhhhhcCCCcceeee
Q psy8591 43 IKCRTSGK-IPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC---IKGRGQFSPILLICGLQKHRTSK 118 (570)
Q Consensus 43 IKCR~sGL-~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~---aNL~kHIeNi~kvfGVnvfvVAi 118 (570)
+++..+|+ ..|+++||.-... |. .++|| ...++|+..+.. +|++.+.+++
T Consensus 99 ~~~~~~g~~~aD~ailVVda~~-----G~--------------------~e~~~~~~~qT~eh~~~~~~-~gi~~iiv~v 152 (446)
T PTZ00141 99 IKNMITGTSQADVAILVVASTA-----GE--------------------FEAGISKDGQTREHALLAFT-LGVKQMIVCI 152 (446)
T ss_pred HHHHHHhhhhcCEEEEEEEcCC-----Cc--------------------eecccCCCccHHHHHHHHHH-cCCCeEEEEE
Confidence 45666666 7888888874321 11 23333 267889988777 9999878999
Q ss_pred cCCCCC--CCCCcccccchhHHHHHHHHHhCCc
Q psy8591 119 NKTSMF--DVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 119 NkF~~~--Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
||.+.. |-+++ .+.++.+.++++...+|+.
T Consensus 153 NKmD~~~~~~~~~-~~~~i~~~i~~~l~~~g~~ 184 (446)
T PTZ00141 153 NKMDDKTVNYSQE-RYDEIKKEVSAYLKKVGYN 184 (446)
T ss_pred EccccccchhhHH-HHHHHHHHHHHHHHhcCCC
Confidence 999521 11111 2355667778888888873
No 11
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=90.26 E-value=0.32 Score=49.16 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=71.6
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEEE---EEeehhhhhcCCCCCCCCCCCCCCcccc------CChH
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVL---VTTVRALKMHGGGPSVVSGQPLKPEYTE------VSTS 89 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVL---VATVRALK~HGG~~~v~~G~PL~~el~e------ENld 89 (570)
...+||+||-..|-++. +.+|++ +||..|+..-.+.= +.+.+.+.+.-. .+|-.+|+++.+ .+-+
T Consensus 159 ~aGA~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~~----~~Gi~vP~~l~~~l~~~~~~~~ 232 (281)
T TIGR00677 159 DAGADFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRAK----WSKTKIPQEIMSRLEPIKDDDE 232 (281)
T ss_pred HcCCCEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHh----cCCCCCCHHHHHHHHhccCCHH
Confidence 36788999999998765 456777 69999885443322 233332222221 235556665543 2323
Q ss_pred H-HHhhhhchHHHHHhhhhhcCCC-cceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 90 T-EHQGCIKGRGQFSPILLICGLQ-KHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 90 a-LekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+ -+.|++--...|+.+.+ .|++ +|.-++|++ +.+.+.|..+|+.
T Consensus 233 ~~~~~gi~~a~~~~~~l~~-~G~~giH~~t~n~~---------------~~~~~il~~l~~~ 278 (281)
T TIGR00677 233 AVRDYGIELIVEMCQKLLA-SGIKGLHFYTLNLE---------------KAALMILERLGLL 278 (281)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCeeEEeccCch---------------HHHHHHHHHcCCC
Confidence 3 35788888888888888 6655 677778888 7789999998854
No 12
>PRK12735 elongation factor Tu; Reviewed
Probab=86.72 E-value=0.27 Score=51.14 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=43.4
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC---ceeeeCCCCc-------eEeeeccC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL---FFEVTNPSGV-------VVSAVDFG 166 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv---~fav~~~~g~-------V~s~~~~G 166 (570)
...+|+..+.. +|++..++++||++..+ ++++ ...+.+.+++++..+|+ +..+..-|+. .|.. ..|
T Consensus 115 qt~e~l~~~~~-~gi~~iivvvNK~Dl~~-~~~~-~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w-~~~ 190 (396)
T PRK12735 115 QTREHILLARQ-VGVPYIVVFLNKCDMVD-DEEL-LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEW-EAK 190 (396)
T ss_pred hHHHHHHHHHH-cCCCeEEEEEEecCCcc-hHHH-HHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcc-ccc
Confidence 34578877776 89998567999996643 2222 22233456677777665 2333322211 0100 136
Q ss_pred chhhhcccCcch
Q psy8591 167 SGELSNILPGFL 178 (570)
Q Consensus 167 g~eLa~~l~~f~ 178 (570)
+.+|-+.|..++
T Consensus 191 ~~~Ll~~l~~~~ 202 (396)
T PRK12735 191 ILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHhcC
Confidence 677777775554
No 13
>PLN00043 elongation factor 1-alpha; Provisional
Probab=85.78 E-value=0.77 Score=49.18 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=35.3
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCC-CcccccchhHHHHHHHHHhCCc
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVS-QPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd-~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+++|+.-+.. +|++.+++++||-+..|.+ .+-...++.+.++++|++.|+.
T Consensus 132 qT~eh~~~~~~-~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~ 184 (447)
T PLN00043 132 QTREHALLAFT-LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN 184 (447)
T ss_pred hHHHHHHHHHH-cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 56788887766 9998879999997432110 1111344567889999999964
No 14
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=83.90 E-value=3.1 Score=36.82 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=46.4
Q ss_pred CCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCC---
Q psy8591 49 GKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFD--- 125 (570)
Q Consensus 49 GL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~D--- 125 (570)
..+||.|||-. |.... ....+.+...+++.+|.+++..... +.. ++.++-. ..+
T Consensus 46 ~~~pd~vvl~~---------G~ND~---------~~~~~~~~~~~~l~~li~~~~~~~~--~~~--vi~~~~~-p~~~~~ 102 (169)
T cd01828 46 ALQPKAIFIMI---------GINDL---------AQGTSDEDIVANYRTILEKLRKHFP--NIK--IVVQSIL-PVGELK 102 (169)
T ss_pred ccCCCEEEEEe---------eccCC---------CCCCCHHHHHHHHHHHHHHHHHHCC--CCe--EEEEecC-CcCccC
Confidence 56899998866 44322 1224567888888888777765422 333 3333332 111
Q ss_pred CCCcccccchhHHHHHHHHHhCCce
Q psy8591 126 VSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 126 td~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
....-.+.++.+.+|++|++.|+.|
T Consensus 103 ~~~~~~~~~~n~~l~~~a~~~~~~~ 127 (169)
T cd01828 103 SIPNEQIEELNRQLAQLAQQEGVTF 127 (169)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 1111234677899999999987754
No 15
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=83.12 E-value=1.2 Score=44.48 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=68.1
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEE---EEEeeh-hhhhcCCCCCCCCCCCCCCcccc------CCh
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVV---LVTTVR-ALKMHGGGPSVVSGQPLKPEYTE------VST 88 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavV---LVATVR-ALK~HGG~~~v~~G~PL~~el~e------ENl 88 (570)
...+||+||-..|.++. +++|++ .||..|+..-... -+.+.+ +++|.- .+|-.+|+++.+ .+.
T Consensus 155 ~aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-----~~Gv~vP~~~~~~l~~~~~~~ 227 (272)
T TIGR00676 155 DAGADYAITQLFFDNDD-YYRFVD-RCRAAGIDVPIIPGIMPITNFKQLLRFAE-----RCGAEIPAWLVKRLEKYDDDP 227 (272)
T ss_pred HcCCCeEeeccccCHHH-HHHHHH-HHHHcCCCCCEecccCCcCCHHHHHHHHh-----ccCCCCCHHHHHHHHhcCCCH
Confidence 45678999999998865 566777 7999987532211 134445 344543 234455655433 233
Q ss_pred HH-HHhhhhchHHHHHhhhhhcCCC-cceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 89 ST-EHQGCIKGRGQFSPILLICGLQ-KHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 89 da-LekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
++ -+.|++-....|+.+++ .|++ +|.-++|++ +.++++|..+|
T Consensus 228 ~~~~~~gi~~~~~~~~~l~~-~g~~GiHl~t~n~~---------------~~~~~il~~l~ 272 (272)
T TIGR00676 228 EEVRAVGIEYATDQCEDLIA-EGVPGIHFYTLNRA---------------DATLEICENLG 272 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEEEEcCCCCH---------------HHHHHHHHhhC
Confidence 32 34788888888888887 5554 455668888 66777787765
No 16
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=78.36 E-value=2.1 Score=44.57 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=32.1
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
..+|+..+.. +|++.+++++||++..|.+ ++ ...+.+.+++++++.|+
T Consensus 116 t~e~l~~~~~-~gi~~iIvvvNK~Dl~~~~-~~-~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 116 TREHILLARQ-VGVPYIVVFLNKCDMVDDE-EL-LELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHH-cCCCEEEEEEEecccCCHH-HH-HHHHHHHHHHHHHhcCC
Confidence 3578888777 8999866899999654322 22 12233467888888875
No 17
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=77.95 E-value=2.1 Score=43.87 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=71.8
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCC-C--CeEEEEEeehhhhhcCCCCCCCCCCCCCCcccc------CChH
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKI-P--DAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE------VSTS 89 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~-P--davVLVATVRALK~HGG~~~v~~G~PL~~el~e------ENld 89 (570)
...+||+||-.-|-++. +++|++ +||..|+. | =.+..+++.+.+++..-.+ |-.+|+++.+ ++.+
T Consensus 174 ~aGA~~~iTQ~~Fd~~~-~~~f~~-~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~----Gv~vP~~l~~~l~~~~d~~~ 247 (296)
T PRK09432 174 DAGANRAITQFFFDVES-YLRFRD-RCVSAGIDVEIVPGILPVSNFKQLKKFADMT----NVRIPAWMAKMFDGLDDDAE 247 (296)
T ss_pred HcCCCeeecccccchHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHHcc----CCCCCHHHHHHHHhcCCCHH
Confidence 35668999999998865 667777 69999862 2 1223355666666664333 5455654422 2323
Q ss_pred -HHHhhhhchHHHHHhhhhhcCCC-cceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 90 -TEHQGCIKGRGQFSPILLICGLQ-KHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 90 -aLekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
..+.|++=-...|+.+.+ .|++ +|.-++|+. +.+.+.|..+|+
T Consensus 248 ~~~~~Gi~~a~e~i~~L~~-~gv~GvH~yt~n~~---------------~~~~~il~~l~l 292 (296)
T PRK09432 248 TRKLVGASIAMDMVKILSR-EGVKDFHFYTLNRA---------------ELTYAICHTLGV 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCEEEEecCCCh---------------HHHHHHHHHhCC
Confidence 344688777777888877 6666 666778887 778899999886
No 18
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=76.71 E-value=0.28 Score=48.97 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=65.2
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEEE-----EEeehhhhhcCCCCCCCCCCCCCCcccc------CC
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVL-----VTTVRALKMHGGGPSVVSGQPLKPEYTE------VS 87 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVL-----VATVRALK~HGG~~~v~~G~PL~~el~e------EN 87 (570)
...+||+||-..|..+. +++|++ .||..|+ ++=|+ +++.+.+.+..... |-.+|+++.+ .+
T Consensus 170 ~aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~g~--~~pIi~GI~p~~s~~~~~~~~~~~----Gv~iP~~~~~~l~~~~~~ 241 (287)
T PF02219_consen 170 DAGADFIITQPFFDAEA-FERFLD-RLREAGI--DVPIIPGIMPLTSAKSARFLAKLC----GVDIPDELIERLEEAKDD 241 (287)
T ss_dssp HTTESEEEEEE-SSHHH-HHHHHH-HHHHTTH--TSEEEEEEE-HCCHHHHHHHHHHH----T-EEEHHHHHHHHTTTT-
T ss_pred HCCCCEEeccccCCHHH-HHHHHH-HHHHcCC--CCcEEEEEeccCCHHHHHHHHhcc----CccCCHHHHHHHHHhcCC
Confidence 34578999999999877 777777 7998888 22222 33444444432211 3334544432 22
Q ss_pred hHH-HHhhhhchHHHHHhhhhhcC-CCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 88 TST-EHQGCIKGRGQFSPILLICG-LQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 88 lda-LekG~aNL~kHIeNi~kvfG-VnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
.++ -+.|++-....|+.+.. .| --+|..++|++ +.+++.|+.||
T Consensus 242 ~~~~~~~gi~~a~e~~~~l~~-~gv~GvH~~t~n~~---------------~~~~~il~~lg 287 (287)
T PF02219_consen 242 PEAVREIGIEIAVELIRELLA-EGVPGVHLYTMNRE---------------ELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-SEEEEEETTTS---------------HHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHH-cCCCeEEEEcCCCH---------------HHHHHHHHHcC
Confidence 333 35588777777888776 45 33566688988 77888898887
No 19
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=75.36 E-value=11 Score=37.09 Aligned_cols=154 Identities=13% Similarity=-0.002 Sum_probs=86.5
Q ss_pred HhhhccccEEEccCCCCCCCcccccccc-ccccCCC---CCCeEEEEEee--hhhhhcCCCCCCCCCCCCCCccccCChH
Q psy8591 16 YDTLLHIAYATQPNREYSVSGMEKFFNI-KCRTSGK---IPDAVVLVTTV--RALKMHGGGPSVVSGQPLKPEYTEVSTS 89 (570)
Q Consensus 16 ~~~~l~~DYVVTEAGFGADLGaEKF~DI-KCR~sGL---~PdavVLVATV--RALK~HGG~~~v~~G~PL~~el~eENld 89 (570)
+--++..-|.+-+..+..++...=|+-| .|+.++. .|.++-+|+++ ...+|.|.... ..-.+|..+
T Consensus 55 naKlGG~n~~~~~~~~~~~~~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~--------~~~~~e~~~ 126 (302)
T PF02171_consen 55 NAKLGGINPWLLDSPPSIDLKNTMIIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRF--------QDSGQEIID 126 (302)
T ss_dssp HHHTTTBSEEECSCSSGSSESEEEEEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEE--------ECTTCCCHH
T ss_pred HHhCCCeeeeecccccccccCceEEEEEEEEecCcccCCcceeeEEEEeccCccccccceeEE--------eccchhhhc
Confidence 3334444466666666444422223222 3443433 58999999999 77777776542 223456667
Q ss_pred HHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCC-----C-CCCcccccchhHHHHHHHHHhC----Cc--eeeeCCCC
Q psy8591 90 TEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMF-----D-VSQPITVGKLSKHYRQLCLFVG----LF--FEVTNPSG 157 (570)
Q Consensus 90 aLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~-----D-td~EI~~~~~~~~lR~~C~~lG----v~--fav~~~~g 157 (570)
.|+.-+.++.++..+..+ -..|. .+.|=|-... + -++|| +.+++.|.+++ .. +-+.+.+.
T Consensus 127 ~l~~~~~~~L~~~~~~~~-~~~P~-~IiiyRdGvse~~~~~v~~~Ei------~~i~~a~~~~~~~~~p~~~~i~v~K~~ 198 (302)
T PF02171_consen 127 NLEEIIKEALKEFKKNNG-KWLPE-RIIIYRDGVSEGQFKKVLEEEI------EAIKEAIKELGEDYNPKITYIVVQKRH 198 (302)
T ss_dssp HHHHHHHHHHHHHHHTTT-T-TTS-EEEEEEES--GGGHHHHHHHHH------HHHHHHHHHHTHTTCTEEEEEEEESSS
T ss_pred chhhHHHHHHHHHHHHcC-CCCCc-eEEEEEcccCHHhhcccHHHHH------HHHHHHHhhcccCCCCcEEEEEeeccc
Confidence 677766666555555444 22566 4455443100 0 13477 88899998887 22 33333344
Q ss_pred ceEeeeccCch-hhhcccCcchhccccccc
Q psy8591 158 VVVSAVDFGSG-ELSNILPGFLVESRQTDE 186 (570)
Q Consensus 158 ~V~s~~~~Gg~-eLa~~l~~f~~~~r~~de 186 (570)
+.. ++..++. .+.|..+|.+++-..+..
T Consensus 199 ~~R-~f~~~~~~~~~N~~~Gtvvd~~i~~~ 227 (302)
T PF02171_consen 199 NTR-FFPQNGRDGLQNPPPGTVVDTGITSP 227 (302)
T ss_dssp S---EEESSSEETTTEECTTEEESSEEEEC
T ss_pred cce-EeecccccccCCCCCCeeeccceeee
Confidence 422 3444444 589999999997666654
No 20
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=73.18 E-value=4.3 Score=45.48 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=45.6
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc-eeeeCCCCceEeeeccCchhhhcccCc
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF-FEVTNPSGVVVSAVDFGSGELSNILPG 176 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~~~g~V~s~~~~Gg~eLa~~l~~ 176 (570)
-..|+..+.. +|++...+++||.+..|. +.+ ..+.+.+++++...|+. ..+.. |-|+-+.|=.+|.+.|..
T Consensus 92 T~ehl~il~~-lgi~~iIVVlNKiDlv~~-~~~--~~v~~ei~~~l~~~~~~~~~ii~----VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 92 TREHLAILQL-TGNPMLTVALTKADRVDE-ARI--AEVRRQVKAVLREYGFAEAKLFV----TAATEGRGIDALREHLLQ 163 (614)
T ss_pred HHHHHHHHHH-cCCCeEEEEEECCccCCH-HHH--HHHHHHHHHHHHhcCCCCCcEEE----EeCCCCCCCHHHHHHHHH
Confidence 4456665555 888866789999965331 122 33345677777777753 33443 344566777788887755
Q ss_pred chh
Q psy8591 177 FLV 179 (570)
Q Consensus 177 f~~ 179 (570)
+..
T Consensus 164 ~~~ 166 (614)
T PRK10512 164 LPE 166 (614)
T ss_pred hhc
Confidence 444
No 21
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=68.41 E-value=5.6 Score=41.65 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=36.6
Q ss_pred hhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCcee
Q psy8591 93 QGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFE 151 (570)
Q Consensus 93 kG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fa 151 (570)
.|+-.|+|-|+-+.. ||++. .+.|||+...|+ | ++++|.+.|+.+-
T Consensus 198 ~glhD~kr~~el~~~-f~ip~-~iViNr~~~g~s--~---------ie~~~~e~gi~il 243 (284)
T COG1149 198 FGLHDLKRALELVEH-FGIPT-GIVINRYNLGDS--E---------IEEYCEEEGIPIL 243 (284)
T ss_pred cchhHHHHHHHHHHH-hCCce-EEEEecCCCCch--H---------HHHHHHHcCCCee
Confidence 477788888888777 99999 889999933333 4 5999999998755
No 22
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=68.25 E-value=5.8 Score=44.33 Aligned_cols=43 Identities=16% Similarity=-0.009 Sum_probs=32.1
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
|+.+++ +|+|. +||+||-+.- +... ..+++-.++.|+..+...
T Consensus 100 I~hak~-a~vP~-iVAiNKiDk~--~~np------~~v~~el~~~gl~~E~~g 142 (509)
T COG0532 100 INHAKA-AGVPI-VVAINKIDKP--EANP------DKVKQELQEYGLVPEEWG 142 (509)
T ss_pred HHHHHH-CCCCE-EEEEecccCC--CCCH------HHHHHHHHHcCCCHhhcC
Confidence 555556 99999 9999998554 3334 678888888899877664
No 23
>PLN02540 methylenetetrahydrofolate reductase
Probab=68.02 E-value=4.4 Score=45.61 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=69.1
Q ss_pred ccccEEEccCCCCCCCccccccccccccCCCCCC---eEEEEEeehhhhhcCCCCCCCCCCCCCCcccc------CChHH
Q psy8591 20 LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPD---AVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE------VSTST 90 (570)
Q Consensus 20 l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~Pd---avVLVATVRALK~HGG~~~v~~G~PL~~el~e------ENlda 90 (570)
.-+||+||-.-|.+|. +.+|++ +||..|+.-- .+.-+.+.+.|+..... .|-.+|+++.+ .+-++
T Consensus 168 AGAdFiITQlfFD~d~-f~~f~~-~~r~~Gi~vPIipGImPI~S~k~l~r~~~l----~Gi~IP~~i~~rLe~~kddde~ 241 (565)
T PLN02540 168 AGADLIITQLFYDTDI-FLKFVN-DCRQIGITCPIVPGIMPINNYKGFLRMTGF----CKTKIPAEITAALEPIKDNDEA 241 (565)
T ss_pred cCCCEEeeccccCHHH-HHHHHH-HHHhcCCCCCEEeeecccCCHHHHHHHHhc----cCCcCCHHHHHHHHhcCCCHHH
Confidence 4788999999998765 456666 8999996321 11223444544433222 35556665543 33344
Q ss_pred -HHhhhhchHHHHHhhhhhcCCC-cceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 91 -EHQGCIKGRGQFSPILLICGLQ-KHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 91 -LekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+.|++-....|+.|+. .|++ +|--++|+. +.+++.|..+|+-
T Consensus 242 v~~~Gieia~e~~~~L~~-~Gv~GiHfYTlN~e---------------~~v~~ILe~lgl~ 286 (565)
T PLN02540 242 VKAYGIHLGTEMCKKILA-HGIKGLHLYTLNLE---------------KSALAILMNLGLI 286 (565)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEECccCCh---------------HHHHHHHHHcCCC
Confidence 34688877778888777 5655 555567776 7788999999974
No 24
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=67.98 E-value=3.8 Score=37.71 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCc-eeeeCCCCceEeeeccCchhhhccc
Q psy8591 137 KHYRQLCLFVGLF-FEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 137 ~~lR~~C~~lGv~-fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
+.||+.|.++|+. +..-=+||||+=--.....+|+..+
T Consensus 22 aeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~i 60 (137)
T PF08002_consen 22 AELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKI 60 (137)
T ss_dssp HHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHH
Confidence 8899999999987 5555689998877777777888777
No 25
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=67.64 E-value=9 Score=42.81 Aligned_cols=117 Identities=12% Similarity=0.014 Sum_probs=72.1
Q ss_pred hhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEE-EEeehhhhhcCCCCCCCCCCCCCCcccc-----CCh-H
Q psy8591 17 DTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVL-VTTVRALKMHGGGPSVVSGQPLKPEYTE-----VST-S 89 (570)
Q Consensus 17 ~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVL-VATVRALK~HGG~~~v~~G~PL~~el~e-----ENl-d 89 (570)
.....+||++|-..|..+. ++||++. ||..++.==+-++ +.+.+.+++--. ..+|-.+|+++.+ ++. +
T Consensus 487 Ki~aGAdf~iTQ~~fd~~~-~~~~~~~-~~~~~vpIi~GImPi~s~k~~~~~~~---~~~Gv~vP~~l~~~l~~~~d~~~ 561 (612)
T PRK08645 487 KIEAGADYFITQPVYDEEL-IEELLEA-TKHLGVPIFIGIMPLVSYRNAEFLHN---EVPGITLPEEIRERMRAVEDKEE 561 (612)
T ss_pred HHHcCCCEEEecccCCHHH-HHHHHHH-HhcCCCCEEEEeeecCCHHHHHHHHh---CCCCCCCCHHHHHHHHhcCCchH
Confidence 3456789999999999865 6777774 7733332122222 556665554321 1234455665543 121 3
Q ss_pred HHHhhhhchHHHHHhhhhhcCCCcceee-ecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 90 TEHQGCIKGRGQFSPILLICGLQKHRTS-KNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 90 aLekG~aNL~kHIeNi~kvfGVnvfvVA-iNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
..+.|++.-.+.|+.++. +.--+|.-+ +|++ +.+++.|..+|..-.+++
T Consensus 562 ~~~~gv~~a~e~i~~l~~-~v~Gvhl~t~~n~~---------------~~~~~il~~l~~~~~~~~ 611 (612)
T PRK08645 562 AREEGVAIARELIDAARE-YFNGIYLITPFLRY---------------EMALELIKYIKSKQEVKE 611 (612)
T ss_pred HHHHHHHHHHHHHHHHHh-hCCEEEEecccCcH---------------HHHHHHHHHHHhhhcccc
Confidence 356798888888888876 433444454 7888 677888888877766553
No 26
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=67.06 E-value=23 Score=31.49 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=55.6
Q ss_pred ccEEEccCCCCCCC-c--cccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch
Q psy8591 22 IAYATQPNREYSVS-G--MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG 98 (570)
Q Consensus 22 ~DYVVTEAGFGADL-G--aEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL 98 (570)
.++-+.-.|+|-+- . .+.++. +| ...+||.|||-. |...... ...+.+.+++++..|
T Consensus 38 ~~~~~~N~g~~G~~~~~~~~~~~~-~~--~~~~~d~vii~~---------G~ND~~~--------~~~~~~~~~~~~~~~ 97 (185)
T cd01832 38 PGIEYANLAVRGRRTAQILAEQLP-AA--LALRPDLVTLLA---------GGNDILR--------PGTDPDTYRADLEEA 97 (185)
T ss_pred CCceEeeccCCcchHHHHHHHHHH-HH--HhcCCCEEEEec---------ccccccc--------CCCCHHHHHHHHHHH
Confidence 45666666665442 2 233322 12 236999887744 3331100 134567788888877
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcc------cccchhHHHHHHHHHhCCcee
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPI------TVGKLSKHYRQLCLFVGLFFE 151 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI------~~~~~~~~lR~~C~~lGv~fa 151 (570)
.++|. . -+..+ +.++-+.. +..+.+ .+.++.++++++|++.|+.|.
T Consensus 98 i~~i~---~-~~~~v--il~~~~~~-~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 98 VRRLR---A-AGARV--VVFTIPDP-AVLEPFRRRVRARLAAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred HHHHH---h-CCCEE--EEecCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 77776 2 23333 33443311 111111 146678999999999886543
No 27
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=66.39 E-value=3.9 Score=45.37 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
..|+..+.. +|++..++++||++..+.+++. +.++.+.++++..++|+
T Consensus 146 ~e~~~~~~~-~~~~~iivvvNK~D~~~~~~~~-~~~i~~~i~~~~~~~~~ 193 (632)
T PRK05506 146 RRHSFIASL-LGIRHVVLAVNKMDLVDYDQEV-FDEIVADYRAFAAKLGL 193 (632)
T ss_pred HHHHHHHHH-hCCCeEEEEEEecccccchhHH-HHHHHHHHHHHHHHcCC
Confidence 456666555 7776557899999664433332 23344556666677776
No 28
>PRK12736 elongation factor Tu; Reviewed
Probab=63.82 E-value=7.7 Score=40.63 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=33.3
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
-..|+..+.. +|++.+++++||++..| ++++ ...+.+.+++++++.|+.
T Consensus 116 t~~~~~~~~~-~g~~~~IvviNK~D~~~-~~~~-~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 116 TREHILLARQ-VGVPYLVVFLNKVDLVD-DEEL-LELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHH-cCCCEEEEEEEecCCcc-hHHH-HHHHHHHHHHHHHHhCCC
Confidence 3567777777 89997789999996543 2232 222345788888888863
No 29
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=62.88 E-value=46 Score=29.26 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=52.5
Q ss_pred ccEEEccCCCCCCCcc---ccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch
Q psy8591 22 IAYATQPNREYSVSGM---EKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG 98 (570)
Q Consensus 22 ~DYVVTEAGFGADLGa---EKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL 98 (570)
.++-|.-.|++.+.-. +++-. ......||.++|-. |.... ....+.+..++.+.+|
T Consensus 35 ~~~~v~n~g~~G~~~~~~~~~l~~---~~~~~~pd~v~i~~---------G~ND~---------~~~~~~~~~~~~l~~l 93 (177)
T cd01822 35 IDVTVINAGVSGDTTAGGLARLPA---LLAQHKPDLVILEL---------GGNDG---------LRGIPPDQTRANLRQM 93 (177)
T ss_pred CCeEEEecCcCCcccHHHHHHHHH---HHHhcCCCEEEEec---------cCccc---------ccCCCHHHHHHHHHHH
Confidence 4677777777755332 33322 22346899877754 33311 1123455566555555
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.+ .+++ .+..+..+.+..-... ... ...++.+.++++|++.|+.+
T Consensus 94 i~---~~~~-~~~~vil~~~~~~~~~--~~~-~~~~~~~~~~~~a~~~~~~~ 138 (177)
T cd01822 94 IE---TAQA-RGAPVLLVGMQAPPNY--GPR-YTRRFAAIYPELAEEYGVPL 138 (177)
T ss_pred HH---HHHH-CCCeEEEEecCCCCcc--chH-HHHHHHHHHHHHHHHcCCcE
Confidence 44 4444 3555533322111011 111 24677899999999988654
No 30
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=62.25 E-value=17 Score=36.90 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=72.9
Q ss_pred EccCCCCCCCccccccccccccCCCCC-----------CeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhh
Q psy8591 26 TQPNREYSVSGMEKFFNIKCRTSGKIP-----------DAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQG 94 (570)
Q Consensus 26 VTEAGFGADLGaEKF~DIKCR~sGL~P-----------davVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG 94 (570)
+.|..||.|.+.-.|--+.+|..+-.| |.-.++-++-++++.||+.. +..++..|
T Consensus 50 ~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~fl~~L~~I~f~GGG~e--------------~~a~iaEG 115 (226)
T PF11265_consen 50 IAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQKFLQWLDAIQFSGGGFE--------------SCAAIAEG 115 (226)
T ss_pred cccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHHHHHHHHccCcCCCCcc--------------cchhHHHH
Confidence 344445555555554445555554444 44457778889999999872 33446666
Q ss_pred hhchHHHHHhhhh------hcCCCcceeeec---CCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCc--eEeee
Q psy8591 95 CIKGRGQFSPILL------ICGLQKHRTSKN---KTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGV--VVSAV 163 (570)
Q Consensus 95 ~aNL~kHIeNi~k------vfGVnvfvVAiN---kF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~--V~s~~ 163 (570)
|+.-..-.+.+.+ ...+..|++.|= =+.+-=...-..-|+..+.+-+++.+.|+.+.|+.|-.. ..+++
T Consensus 116 La~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~la~~~~~~~I~LSiisPrklP~l~~Lf 195 (226)
T PF11265_consen 116 LAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQLAVLISERNISLSIISPRKLPSLRSLF 195 (226)
T ss_pred HHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHHHHHHHHhcCceEEEEcCccCHHHHHHH
Confidence 6543333332221 011223444331 121100111122466778888999999999999876432 34566
Q ss_pred ccCchhhhc
Q psy8591 164 DFGSGELSN 172 (570)
Q Consensus 164 ~~Gg~eLa~ 172 (570)
..+++++.-
T Consensus 196 eka~~~~~~ 204 (226)
T PF11265_consen 196 EKAKGNPRA 204 (226)
T ss_pred HhcCCCccc
Confidence 666666654
No 31
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.12 E-value=58 Score=28.72 Aligned_cols=110 Identities=8% Similarity=-0.057 Sum_probs=54.8
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
.++-|.-.|++-+.-.+--..+........||.|+|-. |......|.. ...+++.++.++.+|.+.
T Consensus 32 ~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~---------G~ND~~~~~~-----~~~~~~~~~~~l~~~v~~ 97 (191)
T cd01834 32 LKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMF---------GINDSFRGFD-----DPVGLEKFKTNLRRLIDR 97 (191)
T ss_pred CCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEe---------ecchHhhccc-----ccccHHHHHHHHHHHHHH
Confidence 35667777777654333222444455567799888755 2221100000 123456666666666665
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCC--------cccccchhHHHHHHHHHhCCc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQ--------PITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~--------EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+.. + .-++.++.++-+...+... .-.+.++.+.++++|++.|+.
T Consensus 98 ~~~--~--~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 149 (191)
T cd01834 98 LKN--K--ESAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVA 149 (191)
T ss_pred HHc--c--cCCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 531 1 1122234455431111110 122456678889999987643
No 32
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=61.61 E-value=3.8 Score=31.08 Aligned_cols=9 Identities=56% Similarity=1.383 Sum_probs=7.7
Q ss_pred hhhhhHHHH
Q psy8591 3 AWRNLFLKI 11 (570)
Q Consensus 3 ~~~~~~~~~ 11 (570)
||||+|.+-
T Consensus 24 AWRNiFvqa 32 (34)
T PF13137_consen 24 AWRNIFVQA 32 (34)
T ss_pred HHHHHHHHc
Confidence 899999864
No 33
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=61.21 E-value=7.8 Score=42.37 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=59.5
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCc
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPG 176 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~ 176 (570)
|+...++-... |++++-.-|.|-- +++ +-+...|+++|+..-+.+|- --.||.+|.+-++.
T Consensus 193 n~~e~~klav~-y~vplvl~a~~dl------~~l------k~la~~~~~~Gi~divLdPg------T~p~~egl~~T~d~ 253 (467)
T COG1456 193 NWKEFAKLAVE-YKVPLVLSAFNDL------DDL------KNLAVTYAQAGIKDIVLDPG------TYPGGEGLKDTFDN 253 (467)
T ss_pred cHHHHHHHHhh-cCCcEEEeccCCH------HHH------HHHHHHHHHcCCceEEecCC------cccCccchhHHHHH
Confidence 33344444455 8888822222322 334 77788899999999999865 45899999999999
Q ss_pred chhccccccccCCCCccccccccccccce
Q psy8591 177 FLVESRQTDESHDMGHFEYGFPSMLIPSY 205 (570)
Q Consensus 177 f~~~~r~~des~~~~~Fe~~y~~~~~~~~ 205 (570)
|+. ||.+-- -...=.|+||-|.+|--
T Consensus 254 ~v~-iRr~aI--e~~d~~~~yPim~~p~~ 279 (467)
T COG1456 254 FVM-IRRAAI--EGFDKDFAYPIMALPFT 279 (467)
T ss_pred HHH-HHHHHh--hccCccccceeeecchh
Confidence 988 554322 01344689999999973
No 34
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=59.67 E-value=8.3 Score=42.86 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc--eeeeCCCCceEeeeccCchhhhcccCc
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF--FEVTNPSGVVVSAVDFGSGELSNILPG 176 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~--fav~~~~g~V~s~~~~Gg~eLa~~l~~ 176 (570)
..|+..+.. +|++-+.+++||.+..|.+ .+ ..+.+.+++++...|+. ..+.. |-|+-+.|=.+|.+.|..
T Consensus 92 ~ehl~il~~-lgi~~iIVVlNK~Dlv~~~-~~--~~~~~ei~~~l~~~~~~~~~~ii~----vSA~tG~GI~eL~~~L~~ 163 (581)
T TIGR00475 92 GEHLAVLDL-LGIPHTIVVITKADRVNEE-EI--KRTEMFMKQILNSYIFLKNAKIFK----TSAKTGQGIGELKKELKN 163 (581)
T ss_pred HHHHHHHHH-cCCCeEEEEEECCCCCCHH-HH--HHHHHHHHHHHHHhCCCCCCcEEE----EeCCCCCCchhHHHHHHH
Confidence 456666655 8998348999998554322 12 22345677777776652 33443 223455565667766654
Q ss_pred chh
Q psy8591 177 FLV 179 (570)
Q Consensus 177 f~~ 179 (570)
++.
T Consensus 164 l~~ 166 (581)
T TIGR00475 164 LLE 166 (581)
T ss_pred HHH
Confidence 444
No 35
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=58.76 E-value=25 Score=31.47 Aligned_cols=106 Identities=8% Similarity=0.032 Sum_probs=51.9
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
.++.|.--|+|-+.=.+-...+.-.....+||.|+|-. |.... .....++...+++..|.+.
T Consensus 30 ~~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~---------G~ND~---------~~~~~~~~~~~~~~~li~~ 91 (183)
T cd04501 30 LGKEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMG---------GTNDI---------IVNTSLEMIKDNIRSMVEL 91 (183)
T ss_pred cCCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEe---------ccCcc---------ccCCCHHHHHHHHHHHHHH
Confidence 34566667777653111111111123456899877644 44321 1112455566665555555
Q ss_pred HHhhhhhcCCCcceeeecCCC--CCC---CCCcccccchhHHHHHHHHHhCCc
Q psy8591 102 FSPILLICGLQKHRTSKNKTS--MFD---VSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~--~~D---td~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
| ++ .|..+..+...-.. ... ....-.+..+.+.++++|.+.|+.
T Consensus 92 ~---~~-~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~ 140 (183)
T cd04501 92 A---EA-NGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLL 140 (183)
T ss_pred H---HH-CCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 5 44 45554333221110 100 000122467889999999998755
No 36
>PLN03127 Elongation factor Tu; Provisional
Probab=58.34 E-value=9 Score=41.34 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=31.2
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.+.|+..+.. +|++.+++++||++.-+ ++++ ...+.+.++++..++|+
T Consensus 165 t~e~l~~~~~-~gip~iIvviNKiDlv~-~~~~-~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 165 TKEHILLARQ-VGVPSLVVFLNKVDVVD-DEEL-LELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHHH-cCCCeEEEEEEeeccCC-HHHH-HHHHHHHHHHHHHHhCC
Confidence 4678888777 99997688999996643 2222 22233456666666665
No 37
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=58.28 E-value=23 Score=37.24 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=83.7
Q ss_pred EEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecC--CC----------
Q psy8591 55 VVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNK--TS---------- 122 (570)
Q Consensus 55 vVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNk--F~---------- 122 (570)
++|=++=.+.||.|| ..+|.++|..+.+.|++|+ +++. -.
T Consensus 45 vIiq~S~g~~~y~gg-------------------------~~~~~~~v~~~a~~~~vPV---~lHlDHg~~~~~~~~ai~ 96 (286)
T COG0191 45 VIIQFSEGAAKYAGG-------------------------ADSLAHMVKALAEKYGVPV---ALHLDHGASFEDCKQAIR 96 (286)
T ss_pred EEEEecccHHHHhch-------------------------HHHHHHHHHHHHHHCCCCE---EEECCCCCCHHHHHHHHh
Confidence 455556677888876 3477888888887788887 5543 20
Q ss_pred ------CCCCC-----CcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccC-------------cch
Q psy8591 123 ------MFDVS-----QPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILP-------------GFL 178 (570)
Q Consensus 123 ------~~Dtd-----~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~-------------~f~ 178 (570)
|+|-+ +-| .+.+.+.++|+..|+.++.- +|..||.|=...+. .|+
T Consensus 97 ~GFsSvMiDgS~~~~eENi---~~tkevv~~ah~~gvsVEaE--------lG~~GG~Edg~~~~~~~~~~tdp~ea~~fv 165 (286)
T COG0191 97 AGFSSVMIDGSHLPFEENI---AITKEVVEFAHAYGVSVEAE--------LGTLGGEEDGVVLYTDPADLTDPEEALEFV 165 (286)
T ss_pred cCCceEEecCCcCCHHHHH---HHHHHHHHHHHHcCCcEEEE--------eccccCccCCcccccchhhhCCHHHHHHHH
Confidence 22222 223 45678889999999988875 67777776532221 233
Q ss_pred hc------cccccccCCCCccccccccc------------cccceecccccccccccccccCceeeEEee
Q psy8591 179 VE------SRQTDESHDMGHFEYGFPSM------------LIPSYVVSHSKEDVSRDRISSGYTLGVVRT 230 (570)
Q Consensus 179 ~~------~r~~des~~~~~Fe~~y~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (570)
.+ -..+--+|+.-.| .-|.. -+| .|-|--..++.+.|..+..+||..-
T Consensus 166 ~~tgiD~LA~aiGn~HG~Yk~--~~p~L~~~~L~~i~~~~~~P--lVlHGgSGip~~eI~~aI~~GV~Kv 231 (286)
T COG0191 166 ERTGIDALAAAIGNVHGVYKP--GNPKLDFDRLKEIQEAVSLP--LVLHGGSGIPDEEIREAIKLGVAKV 231 (286)
T ss_pred hccCcceeeeeccccccCCCC--CCCCCCHHHHHHHHHHhCCC--EEEeCCCCCCHHHHHHHHHhCceEE
Confidence 22 0223345644333 22311 155 7889888999999999999998764
No 38
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.14 E-value=27 Score=32.73 Aligned_cols=73 Identities=7% Similarity=-0.072 Sum_probs=41.7
Q ss_pred hhhHHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHH
Q psy8591 12 SRNFYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTE 91 (570)
Q Consensus 12 ~~~~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaL 91 (570)
.+.+-.+..++||||-..+-|.+.-....+ ..-|.+++|++.-.. ++
T Consensus 99 ~~~l~~l~~~yD~VIiD~p~~~~~~~~~~l--------~~ad~vliv~~~~~~-------------------------s~ 145 (251)
T TIGR01969 99 EDVLKEIIDDTDFLLIDAPAGLERDAVTAL--------AAADELLLVVNPEIS-------------------------SI 145 (251)
T ss_pred HHHHHHHHhhCCEEEEeCCCccCHHHHHHH--------HhCCeEEEEECCCCc-------------------------hH
Confidence 334444567899999999877643222222 134778887743211 11
Q ss_pred HhhhhchHHHHHhhhhhcCCCcceeeecCCC
Q psy8591 92 HQGCIKGRGQFSPILLICGLQKHRTSKNKTS 122 (570)
Q Consensus 92 ekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~ 122 (570)
.++.+.++.+.. .+++...+.+|++.
T Consensus 146 ----~~~~~~~~~~~~-~~~~~~~vv~N~~~ 171 (251)
T TIGR01969 146 ----TDALKTKIVAEK-LGTAILGVVLNRVT 171 (251)
T ss_pred ----HHHHHHHHHHHh-cCCceEEEEEECCC
Confidence 122333444444 67776688999993
No 39
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=57.56 E-value=7.1 Score=40.35 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=39.8
Q ss_pred HhhhHHhhhc--cccEEEccCC-----------------CCCCCcccccccc------------------------cccc
Q psy8591 11 ISRNFYDTLL--HIAYATQPNR-----------------EYSVSGMEKFFNI------------------------KCRT 47 (570)
Q Consensus 11 ~~~~~~~~~l--~~DYVVTEAG-----------------FGADLGaEKF~DI------------------------KCR~ 47 (570)
|-+..++.|. ..|++++|.| |..++|.|.|+-| .+|.
T Consensus 120 Ik~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs 199 (255)
T cd03113 120 IKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRS 199 (255)
T ss_pred HHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHh
Confidence 5556666663 7899999999 7788999998887 5788
Q ss_pred CCCCCCeEEEEE
Q psy8591 48 SGKIPDAVVLVT 59 (570)
Q Consensus 48 sGL~PdavVLVA 59 (570)
.||.||.+|+-+
T Consensus 200 ~GIqPDgIVcRs 211 (255)
T cd03113 200 IGIQPDILVCRS 211 (255)
T ss_pred CCCCCCEEEEeC
Confidence 999999998743
No 40
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=56.98 E-value=14 Score=40.56 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=55.5
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCC----CC-ceEe----eeccCc
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNP----SG-VVVS----AVDFGS 167 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~----~g-~V~s----~~~~Gg 167 (570)
-=+||--.... +|+.-+++|+||-+-.|=++|. ...+.+.|+.+++.||+.....=| -| ||+. .-|.-|
T Consensus 126 QTrRHs~I~sL-LGIrhvvvAVNKmDLvdy~e~~-F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~G 203 (431)
T COG2895 126 QTRRHSFIASL-LGIRHVVVAVNKMDLVDYSEEV-FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKG 203 (431)
T ss_pred HhHHHHHHHHH-hCCcEEEEEEeeecccccCHHH-HHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccC
Confidence 45788777666 9999999999998888888887 788889999999999997432100 01 2222 346667
Q ss_pred hhhhccc
Q psy8591 168 GELSNIL 174 (570)
Q Consensus 168 ~eLa~~l 174 (570)
--|-+.|
T Consensus 204 ptLLe~L 210 (431)
T COG2895 204 PTLLEIL 210 (431)
T ss_pred ccHHHHH
Confidence 7777777
No 41
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.86 E-value=59 Score=29.46 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=28.1
Q ss_pred hchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 96 IKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 96 aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.||...|+.+++ -|..+..+...-+......+ .+.++.+.+++.|.+.|+.|
T Consensus 95 ~~l~~lv~~~~~-~~~~vili~~pp~~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 146 (200)
T cd01829 95 QRIDELLNVARA-KGVPVIWVGLPAMRSPKLSA--DMVYLNSLYREEVAKAGGEF 146 (200)
T ss_pred HHHHHHHHHHHh-CCCcEEEEcCCCCCChhHhH--HHHHHHHHHHHHHHHcCCEE
Confidence 466666666554 45555333332220000111 23567889999999988654
No 42
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=56.44 E-value=23 Score=38.02 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=57.1
Q ss_pred HHHhhhHHhhhccccEEEccCCCCCCCcc----ccc--cccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCc
Q psy8591 9 LKISRNFYDTLLHIAYATQPNREYSVSGM----EKF--FNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPE 82 (570)
Q Consensus 9 ~~~~~~~~~~~l~~DYVVTEAGFGADLGa----EKF--~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~e 82 (570)
-+|.+.|.+++...||+|-|.--|---|. +.. .|| .+..|+ -|+||+.++..
T Consensus 69 ~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adi-A~~l~~---pviLV~~~~~~------------------ 126 (451)
T PRK01077 69 ELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADI-AKLLGA---PVVLVVDASGM------------------ 126 (451)
T ss_pred HHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHH-HHHhCC---CEEEEECCchH------------------
Confidence 46778888888889999999654442221 111 122 333333 26666643321
Q ss_pred cccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 83 YTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 83 l~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
..+++++..|+.++.+ ++++..+.+|++ ..+ ... +.+++.+++.|+.
T Consensus 127 --~~~~a~l~~~~~~~~~---------~i~i~GvI~N~v-~~~--~~~------~~l~~~l~~~gip 173 (451)
T PRK01077 127 --AQSAAALVLGFATFDP---------DVRIAGVILNRV-GSE--RHY------QLLREALERCGIP 173 (451)
T ss_pred --HHHHHHHHHHHHHhCC---------CCCEEEEEEECC-CCh--hHH------HHHHHHHHhcCCC
Confidence 1235566667666532 456668899999 322 223 5567777666655
No 43
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=54.42 E-value=51 Score=38.86 Aligned_cols=77 Identities=14% Similarity=0.030 Sum_probs=39.4
Q ss_pred hhhchHHHHHhhhhhcCCCcceeeecCCCCCCC--CCcccccchhHHHHHHHH-HhCCceeeeCCCCceEeeeccCchhh
Q psy8591 94 GCIKGRGQFSPILLICGLQKHRTSKNKTSMFDV--SQPITVGKLSKHYRQLCL-FVGLFFEVTNPSGVVVSAVDFGSGEL 170 (570)
Q Consensus 94 G~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dt--d~EI~~~~~~~~lR~~C~-~lGv~fav~~~~g~V~s~~~~Gg~eL 170 (570)
|+....|.++...+ ||+|+ +..++-- ++.- ..|- .|. ..++.+.+. -.++.++++. |+-=-+.||+.|
T Consensus 227 GyRKAlRlmkLAek-fgLPI-VtLVDTp-GA~pG~~AEe-~Gq-~~aIArnl~amasl~VP~IS----VViGeggSGGAl 297 (762)
T PLN03229 227 GYRKALRMMYYADH-HGFPI-VTFIDTP-GAYADLKSEE-LGQ-GEAIAHNLRTMFGLKVPIVS----IVIGEGGSGGAL 297 (762)
T ss_pred HHHHHHHHHHHHHH-cCCCE-EEEEECC-CcCCCchhHH-HhH-HHHHHHHHHHHhCCCCCEEE----EEeCCcchHHHH
Confidence 45555666666666 99999 7777753 3332 2222 133 344444333 3466666663 221112345666
Q ss_pred hcccCcchh
Q psy8591 171 SNILPGFLV 179 (570)
Q Consensus 171 a~~l~~f~~ 179 (570)
+-.+.+|+.
T Consensus 298 A~g~aD~Vl 306 (762)
T PLN03229 298 AIGCANKLL 306 (762)
T ss_pred HhhcCCEEE
Confidence 655544433
No 44
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.25 E-value=7.5 Score=38.43 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=54.5
Q ss_pred ccccEEEccCCCCCCCccccccccccccCCCC-C--CeEEEEEeehhhhhcCCCCCCCCCCCCCCcccc------CC-hH
Q psy8591 20 LHIAYATQPNREYSVSGMEKFFNIKCRTSGKI-P--DAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE------VS-TS 89 (570)
Q Consensus 20 l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~-P--davVLVATVRALK~HGG~~~v~~G~PL~~el~e------EN-ld 89 (570)
..+||+||-..|..+. +++|++ .||..|+. | -.+..+.+.+.|++..... |-.+++++.+ .+ .+
T Consensus 159 aGA~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~----Gv~vP~~~~~~l~~~~~~~~~ 232 (274)
T cd00537 159 AGADFIITQLFFDNDA-FLRFVD-RCRAAGITVPIIPGIMPLTSYKQAKRFAKLC----GVEIPDWLLERLEKLKDDAEA 232 (274)
T ss_pred CCCCEEeecccccHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHHhh----CCCCCHHHHHHHHhcCCCHHH
Confidence 4679999999997653 455666 59999963 2 1122234555555542111 2234544433 12 23
Q ss_pred HHHhhhhchHHHHHhhhhhcCCC-cceeeecCC
Q psy8591 90 TEHQGCIKGRGQFSPILLICGLQ-KHRTSKNKT 121 (570)
Q Consensus 90 aLekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF 121 (570)
..+.|.+-....|+.+.. -|+. +|.-.+|++
T Consensus 233 ~~~~g~~~~~~l~~~l~~-~~~~giH~~t~n~~ 264 (274)
T cd00537 233 VRAEGIEIAAELCDELLE-HGVPGIHFYTLNRE 264 (274)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEcCCCCh
Confidence 456687777777777766 3444 555566666
No 45
>PRK00049 elongation factor Tu; Reviewed
Probab=54.07 E-value=15 Score=38.65 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=32.1
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
..+.|+..+.. +|++..++++||++..+ ++++ ...+.+.++++.+.+|+
T Consensus 115 qt~~~~~~~~~-~g~p~iiVvvNK~D~~~-~~~~-~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 115 QTREHILLARQ-VGVPYIVVFLNKCDMVD-DEEL-LELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHHHHHH-cCCCEEEEEEeecCCcc-hHHH-HHHHHHHHHHHHHhcCC
Confidence 44567877776 89998667999996643 2222 22344567777777776
No 46
>PF14106 DUF4279: Domain of unknown function (DUF4279)
Probab=53.85 E-value=28 Score=29.86 Aligned_cols=102 Identities=11% Similarity=-0.055 Sum_probs=62.4
Q ss_pred cccCCCCCCeEEEEEeehhhhh----cCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCC-cceeeec
Q psy8591 45 CRTSGKIPDAVVLVTTVRALKM----HGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQ-KHRTSKN 119 (570)
Q Consensus 45 CR~sGL~PdavVLVATVRALK~----HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVn-vfvVAiN 119 (570)
-+..|+.|+-+..-.-.+..+. +++-. +..+ .......++.++.|.+=+.+....|..+.+.+++. .+....+
T Consensus 12 T~~Lgi~Pt~~~~kG~~~~~~~~~~~~~~W~-~~~~-~~~~~dl~~~l~~ll~~L~~~~~~i~~l~~~~~~~~~~~~~~~ 89 (118)
T PF14106_consen 12 TRLLGIEPTETWRKGDRRSNPSRPRKESSWS-LSSE-LEESSDLEDHLEELLDRLEPKREIIKELKEKYNLEIQFFCYFS 89 (118)
T ss_pred HHHHCCCceEEEecCCcccCCCcceeeceEE-EecC-CCCccCHHHHHHHHHHHHcccHHHHHHHHHhcCcceEEEEEEE
Confidence 4567888888776655554332 11100 0000 01122245678888888888888888888889998 5455555
Q ss_pred CCCCCCCCCcccccchhHHHHHHHHHhCCceee
Q psy8591 120 KTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEV 152 (570)
Q Consensus 120 kF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav 152 (570)
.. ...+...--|++.+.++|.++|+.+.+
T Consensus 90 ~~----~~~~~~~~~l~~~~i~~l~~lg~eidi 118 (118)
T PF14106_consen 90 SI----SGGGFPAIYLSPEIIKFLAALGAEIDI 118 (118)
T ss_pred ec----CCCCCcccccCHHHHHHHHhhCCEEeC
Confidence 44 233332223889999999999998754
No 47
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=52.02 E-value=10 Score=36.92 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=18.7
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSM 123 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~ 123 (570)
-..|++-+.. .|+++ .+++||++.
T Consensus 127 d~~~l~~l~~-~~ip~-ivvvNK~D~ 150 (224)
T cd04165 127 TKEHLGLALA-LNIPV-FVVVTKIDL 150 (224)
T ss_pred HHHHHHHHHH-cCCCE-EEEEECccc
Confidence 4567777666 89997 889999954
No 48
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=51.32 E-value=10 Score=44.21 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=15.8
Q ss_pred HHHhhhhhcCCCcceeeecCCCC
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSM 123 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~ 123 (570)
||..+.. +|+++ ++++||.+.
T Consensus 381 ~i~~a~~-~~vPi-IVviNKiDl 401 (787)
T PRK05306 381 AINHAKA-AGVPI-IVAINKIDK 401 (787)
T ss_pred HHHHHHh-cCCcE-EEEEECccc
Confidence 4555555 89997 899999854
No 49
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=51.24 E-value=83 Score=30.72 Aligned_cols=97 Identities=7% Similarity=-0.093 Sum_probs=50.5
Q ss_pred hhHHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHH
Q psy8591 13 RNFYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEH 92 (570)
Q Consensus 13 ~~~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLe 92 (570)
+.|..+...+||++=-+ +|.--...+-+..+-..-|.+|+++|...+ ++
T Consensus 107 ~~l~~l~~~yD~iiIDt-----~~~~~~~~~~~~~~~~aAD~viip~~p~~~-------------------------sl- 155 (275)
T TIGR01287 107 EELGAYEDDLDFVFYDV-----LGDVVCGGFAMPIREGKAQEIYIVTSGEMM-------------------------AL- 155 (275)
T ss_pred HHhhhhhccCCEEEEec-----cCcceecceeeccccccccEEEEEecchHH-------------------------HH-
Confidence 34545566789988666 221100011111111234778888765432 22
Q ss_pred hhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 93 QGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 93 kG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+|+.+|.++|..+++..++....+..|+. . ...+. +.++++|...|..
T Consensus 156 ~~~~~l~~~i~~~~~~~~~~~~giv~n~~-~--~~~~~------~~~e~l~~~~~~~ 203 (275)
T TIGR01287 156 YAANNICKGILKYAKSGGVRLGGLICNSR-N--VDDEK------ELIDEFAKKLGTQ 203 (275)
T ss_pred HHHHHHHHHHHHHHhcCCCeeeEEEEcCC-C--CchHH------HHHHHHHHHhCCc
Confidence 35556666666554434555555566764 2 22223 5567888877754
No 50
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=51.16 E-value=11 Score=35.93 Aligned_cols=103 Identities=11% Similarity=0.116 Sum_probs=60.5
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
|+..|.+.++ .|=..+++++.|+.+|+.+.+..-. +....+...|-.++.= --+-.++| -+..|.|.-|.
T Consensus 39 ~~~~~~~g~~-~G~~vdi~~~ia~~lg~~i~~~~~pw~~~~~~l~~g~~D~~~------~~~~~t~e--R~~~~~fs~p~ 109 (259)
T PRK15437 39 FESKNSQGEL-VGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIM------SSLSITEK--RQQEIAFTDKL 109 (259)
T ss_pred cceeCCCCCE-EeeeHHHHHHHHHHcCCceEEEeCCHHHHHHHHHCCCCCEEE------ecCCCCHH--Hhhhccccchh
Confidence 3333566666 6778899999999999998886311 1111123333333221 01223344 34677777777
Q ss_pred ccccceeccccccccc--ccccccCceeeEEeecch
Q psy8591 200 MLIPSYVVSHSKEDVS--RDRISSGYTLGVVRTSGT 233 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (570)
......++.+...... -+-+ .|+++|+++.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~dl-~g~~Igv~~g~~~ 144 (259)
T PRK15437 110 YAADSRLVVAKNSDIQPTVESL-KGKRVGVLQGTTQ 144 (259)
T ss_pred hcCceEEEEECCCCCCCChHHh-CCCEEEEecCcHH
Confidence 7777777766543322 2222 7999999987753
No 51
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=50.67 E-value=12 Score=32.86 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhc-ccCcchhccccccccCCCCcccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSN-ILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~-~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
|+..|.+.++ .|-.-++++++|+++|+.+.+...+ ....-..|.+ +++..+.-+..+.+ ....|.|--|.
T Consensus 12 ~~~~~~~~~~-~G~~~dl~~~i~~~~g~~~~~~~~~------~~~~~~~l~~g~~D~~~~~~~~~~~--r~~~~~~s~p~ 82 (225)
T PF00497_consen 12 FSYIDEDGEP-SGIDVDLLRAIAKRLGIKIEFVPMP------WSRLLEMLENGKADIIIGGLSITPE--RAKKFDFSDPY 82 (225)
T ss_dssp TBEEETTSEE-ESHHHHHHHHHHHHHTCEEEEEEEE------GGGHHHHHHTTSSSEEESSEB-BHH--HHTTEEEESES
T ss_pred eEEECCCCCE-EEEhHHHHHHHHhhcccccceeecc------ccccccccccccccccccccccccc--ccccccccccc
Confidence 4445556666 7888899999999999998888511 1111112222 23322323344455 23567777776
Q ss_pred ccccceecccccc-----ccc-ccccccCceeeEEeecchh-hhhh
Q psy8591 200 MLIPSYVVSHSKE-----DVS-RDRISSGYTLGVVRTSGTR-MLNA 238 (570)
Q Consensus 200 ~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 238 (570)
+.....++.+.+. .+. -+.+ .|.++|+++-+... .|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~dl-~~~~i~~~~g~~~~~~l~~ 127 (225)
T PF00497_consen 83 YSSPYVLVVRKGDAPPIKTIKSLDDL-KGKRIGVVRGSSYADYLKQ 127 (225)
T ss_dssp EEEEEEEEEETTSTCSTSSHSSGGGG-TTSEEEEETTSHHHHHHHH
T ss_pred cchhheeeeccccccccccccchhhh-cCcccccccchhHHHHhhh
Confidence 6666666666431 221 1123 78999999865543 4444
No 52
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=50.34 E-value=25 Score=36.96 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
+|+..+.. +|++.+.+++||++..+.+++. ...+.+.+++++..+|+
T Consensus 129 ~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~-~~~~~~~i~~~l~~~g~ 175 (425)
T PRK12317 129 EHVFLART-LGINQLIVAINKMDAVNYDEKR-YEEVKEEVSKLLKMVGY 175 (425)
T ss_pred HHHHHHHH-cCCCeEEEEEEccccccccHHH-HHHHHHHHHHHHHhhCC
Confidence 45655555 7876458899999654322211 12334677788888886
No 53
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.01 E-value=32 Score=31.16 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=41.9
Q ss_pred CCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCC-
Q psy8591 50 KIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQ- 128 (570)
Q Consensus 50 L~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~- 128 (570)
.+||.|+|-.=.--+...++. ......+..++++..|.+.++. +.++ +.+.-. .++...
T Consensus 68 ~~pd~V~i~~G~ND~~~~~~~------------~~~~~~~~~~~~~~~ii~~~~~-----~~~v--i~~~~~-p~~~~~~ 127 (193)
T cd01835 68 NVPNRLVLSVGLNDTARGGRK------------RPQLSARAFLFGLNQLLEEAKR-----LVPV--LVVGPT-PVDEAKM 127 (193)
T ss_pred CCCCEEEEEecCcccccccCc------------ccccCHHHHHHHHHHHHHHHhc-----CCcE--EEEeCC-Ccccccc
Confidence 689999887633333222111 0123455666666666554432 2233 222322 122111
Q ss_pred ---cccccchhHHHHHHHHHhCCce
Q psy8591 129 ---PITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 129 ---EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.-.+.++.+.++++|++.|+.+
T Consensus 128 ~~~~~~~~~~n~~~~~~a~~~~~~~ 152 (193)
T cd01835 128 PYSNRRIARLETAFAEVCLRRDVPF 152 (193)
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCe
Confidence 1134678899999999988653
No 54
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=49.92 E-value=27 Score=33.31 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.++|+..+.+ +|++.+++++||++..+ ++++ ...+.+.++++..++|+
T Consensus 106 ~~~~~~~~~~-~~~~~iIvviNK~D~~~-~~~~-~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 106 TREHLLLARQ-VGVPYIVVFLNKADMVD-DEEL-LELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHH-cCCCcEEEEEeCCCCCC-cHHH-HHHHHHHHHHHHHHhcc
Confidence 4567777777 89986578999996543 2332 22344567888888887
No 55
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=49.57 E-value=60 Score=29.69 Aligned_cols=106 Identities=13% Similarity=0.027 Sum_probs=55.2
Q ss_pred cEEEccCCCCCCCcc----ccccccccccCCC-CCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhc
Q psy8591 23 AYATQPNREYSVSGM----EKFFNIKCRTSGK-IPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIK 97 (570)
Q Consensus 23 DYVVTEAGFGADLGa----EKF~DIKCR~sGL-~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aN 97 (570)
++.|.-.|.+-+.-. ++.++--+ ..+ .||.++|.. |......+.. . ....++..++++.+
T Consensus 34 ~~~v~N~gi~G~ts~~~~~~~~~~~~l--~~~~~pdlVii~~---------G~ND~~~~~~---~-~~~~~~~~~~nl~~ 98 (198)
T cd01821 34 GITVVNHAKGGRSSRSFRDEGRWDAIL--KLIKPGDYVLIQF---------GHNDQKPKDP---E-YTEPYTTYKEYLRR 98 (198)
T ss_pred CCEEEeCCCCCccHHHHHhCCcHHHHH--hhCCCCCEEEEEC---------CCCCCCCCCC---C-CCCcHHHHHHHHHH
Confidence 566767777655432 12222111 123 689988865 4442211110 0 12356677777777
Q ss_pred hHHHHHhhhhhcCCCcceee---ecCCCCCC--CCCcccccchhHHHHHHHHHhCCce
Q psy8591 98 GRGQFSPILLICGLQKHRTS---KNKTSMFD--VSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVA---iNkF~~~D--td~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
|.+++.. .|..+..+. .+.| ..+ ..+. +.++.+.+|++|++.|+.|
T Consensus 99 ii~~~~~----~~~~~il~tp~~~~~~-~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 99 YIAEARA----KGATPILVTPVTRRTF-DEGGKVEDT--LGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHH----CCCeEEEECCcccccc-CCCCccccc--chhHHHHHHHHHHHhCCCE
Confidence 7666654 233331111 2234 111 1222 3677899999999999776
No 56
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=48.79 E-value=9.2 Score=44.82 Aligned_cols=188 Identities=14% Similarity=0.139 Sum_probs=111.2
Q ss_pred ccEEEccCCCCCCCccccccccccccCC--CCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSG--KIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGR 99 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sG--L~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~ 99 (570)
+|.-+-|.|-.+---|++|++.-.-... |.=|-...=+.-++||+.+|.+-+ |--.++.|-.-+.
T Consensus 71 lDvn~d~~~~D~~~~m~~~l~~~a~~~~vPlMIDSs~~eviEagLk~~qGk~iv-------------NSis~eege~~f~ 137 (842)
T COG1410 71 LDVNVDYVGRDGVADMVELLNLLANEPTVPLMIDSSEWEVIEAGLKCAQGKCIV-------------NSINYEEGEERFE 137 (842)
T ss_pred EEeeccccccccHHHHHHHHHHhccCCCCceEEehhHHHHHHHHHhhccCceee-------------eeeeecccHHHHH
Confidence 4556666666666667888886443332 111222222334789988887743 3334566666788
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCcee--eeCCCCceEeeeccCchhhhcccCcc
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFE--VTNPSGVVVSAVDFGSGELSNILPGF 177 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fa--v~~~~g~V~s~~~~Gg~eLa~~l~~f 177 (570)
+|+.-+++ ||..+-+.++-.--+-|+.+ -.+.-....| ++|.+.|+.-. |.++- |+. .+.|++|=.|-.=.|
T Consensus 138 ~~~~Lvkk-YGaaVVvma~DE~GqA~t~e-RK~eIakR~y-~l~~~~gfpp~dIIfDPn--vf~-iaTgiEEh~~~gvd~ 211 (842)
T COG1410 138 KVAELVKK-YGAAVVVMTIDEEGQARTAE-RKFEIAKRAY-ILTEEVGFPPEDIIFDPN--VFP-IATGIEEHRNYGVDT 211 (842)
T ss_pred HHHHHHHH-hCCcEEEEeeccccccccHH-HHHHHHHHHH-HHHHhcCCCchheeeccc--eee-eccchhhhhhhHHHH
Confidence 88888888 99999333333332222222 1111133445 89999999843 55643 554 567887777777778
Q ss_pred hhccccccccC-------CCCcccccccc---ccccceecccccccccccccccCceeeEEeecchhhh
Q psy8591 178 LVESRQTDESH-------DMGHFEYGFPS---MLIPSYVVSHSKEDVSRDRISSGYTLGVVRTSGTRML 236 (570)
Q Consensus 178 ~~~~r~~des~-------~~~~Fe~~y~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (570)
+..+|-+.+.. +-+|-.|+|+. ..|-+.+.-| -|+.|.+.|+|..+---.+
T Consensus 212 Ieair~Ik~~LP~~~tt~GvSNvSFslrg~~Re~lnavFLy~--------~i~aGmD~aIVNa~kl~~y 272 (842)
T COG1410 212 IEAIRRIKKELPHVLTTLGLSNVSFGLRGAVREVLNSVFLYE--------AISAGLDMAIVNAGKLLIY 272 (842)
T ss_pred HHHHHHHHHhCccceeccccccccCCCChHHHHhhhHHHHHH--------HHhcCCchhhccccchhhh
Confidence 88788777755 34677777773 2232322222 3667778888766544333
No 57
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=44.81 E-value=17 Score=34.70 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=58.2
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
|+..|.+.+. .|=.-+++++.|+.+|+++...... ..+......|-.++.=. -+..+.| -+..|.|.-|-
T Consensus 39 f~~~~~~g~~-~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~Di~~~------~~~~t~e--R~~~~~fs~p~ 109 (260)
T PRK15010 39 FSSKDAKGDF-VGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIIS------SLSITDK--RQQEIAFSDKL 109 (260)
T ss_pred ceeECCCCCE-EeeeHHHHHHHHHHhCCceEEEeCCHHHHHHHHHCCCCCEEEe------cCcCCHH--HHhhcccccce
Confidence 3333555555 5778899999999999998865311 11222444444443211 0123333 33567777776
Q ss_pred ccccceecccccccccc-cccccCceeeEEeecc
Q psy8591 200 MLIPSYVVSHSKEDVSR-DRISSGYTLGVVRTSG 232 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 232 (570)
+.....++.+......+ -.--+|+++|+++-+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~dl~g~~Igv~~gs~ 143 (260)
T PRK15010 110 YAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGST 143 (260)
T ss_pred EeccEEEEEECCCCCCCChhHcCCCEEEEecCch
Confidence 66665665554432221 1223689999998664
No 58
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=43.84 E-value=95 Score=29.76 Aligned_cols=47 Identities=6% Similarity=-0.144 Sum_probs=26.5
Q ss_pred hhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 94 GCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 94 G~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
|+.++.+-|..+.+..+++...+..|+. . +..+- +.++++|+.+|..
T Consensus 158 ~~~~l~~~i~~~~~~~~~~l~gVv~n~~-~--~~~~~------~~~~~l~~~~g~~ 204 (270)
T cd02040 158 AANNICKGILKYAKSGGVRLGGLICNSR-N--TDRED------ELIDAFAKRLGTQ 204 (270)
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEecC-C--ChhHH------HHHHHHHHHcCCC
Confidence 4555555565554434566544556764 2 22222 5678888888764
No 59
>KOG0458|consensus
Probab=42.41 E-value=24 Score=40.38 Aligned_cols=60 Identities=25% Similarity=0.217 Sum_probs=42.8
Q ss_pred ChHHHHhhhhch---HHHHHhhhhhcCCCcceeeecCCC----CCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 87 STSTEHQGCIKG---RGQFSPILLICGLQKHRTSKNKTS----MFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 87 NldaLekG~aNL---~kHIeNi~kvfGVnvfvVAiNkF~----~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
|..+.|+||.+. +.|..-++. +|+.=..|||||-+ ..|-=+|| +.+|+.+|++.|.+---
T Consensus 289 s~~~FE~gfd~~gQtrEha~llr~-Lgi~qlivaiNKmD~V~Wsq~RF~eI-k~~l~~fL~~~~gf~es 355 (603)
T KOG0458|consen 289 STGEFESGFDPGGQTREHALLLRS-LGISQLIVAINKMDLVSWSQDRFEEI-KNKLSSFLKESCGFKES 355 (603)
T ss_pred CcchhhhccCCCCchHHHHHHHHH-cCcceEEEEeecccccCccHHHHHHH-HHHHHHHHHHhcCcccC
Confidence 456788898843 345555555 99998899999843 33334577 88899999999987443
No 60
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=42.41 E-value=18 Score=34.04 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=50.9
Q ss_pred CCcccccchhHHHHHHHHHhCCceeeeCC-CCceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccccce
Q psy8591 127 SQPITVGKLSKHYRQLCLFVGLFFEVTNP-SGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSY 205 (570)
Q Consensus 127 d~EI~~~~~~~~lR~~C~~lGv~fav~~~-~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~ 205 (570)
+.++ .|-..++++++|+.+|+.+.+... -..++.....|-.+++-.. +..+++ .+..|.|.-|.+..+..
T Consensus 43 ~g~~-~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~l~~G~vDi~~~~------~~~t~~--R~~~~~fs~p~~~~~~~ 113 (247)
T PRK09495 43 GDKY-VGFDIDLWAAIAKELKLDYTLKPMDFSGIIPALQTKNVDLALAG------ITITDE--RKKAIDFSDGYYKSGLL 113 (247)
T ss_pred CCce-EEEeHHHHHHHHHHhCCceEEEeCCHHHHHHHHhCCCcCEEEec------CccCHH--HHhhccccchheecceE
Confidence 4545 588889999999999999888631 1112223333433332111 112333 24566666555544444
Q ss_pred eccccccc-c-cccccccCceeeEEeec
Q psy8591 206 VVSHSKED-V-SRDRISSGYTLGVVRTS 231 (570)
Q Consensus 206 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 231 (570)
++.+.... + +-+.+ .|+++|+++.+
T Consensus 114 ~~~~~~~~~~~~~~dL-~g~~I~v~~g~ 140 (247)
T PRK09495 114 VMVKANNNDIKSVKDL-DGKVVAVKSGT 140 (247)
T ss_pred EEEECCCCCCCChHHh-CCCEEEEecCc
Confidence 44432211 1 11223 58899999854
No 61
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=42.36 E-value=46 Score=35.90 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHhhhHHhhhccccEEEccCCCCCCCcc----cc--ccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCC
Q psy8591 8 FLKISRNFYDTLLHIAYATQPNREYSVSGM----EK--FFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP 81 (570)
Q Consensus 8 ~~~~~~~~~~~~l~~DYVVTEAGFGADLGa----EK--F~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~ 81 (570)
+-+|.+.|.+++...|++|-|.--|---|. +. ..|| .+..|+ -||||+-.+.+
T Consensus 64 ~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adl-Ak~l~~---pVILV~~~~~~----------------- 122 (449)
T TIGR00379 64 EAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASV-AKALDA---PIVLVMNCQRL----------------- 122 (449)
T ss_pred HHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHH-HHHhCC---CEEEEECCchH-----------------
Confidence 567778888888889999999543332121 11 2233 233333 37777755422
Q ss_pred ccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCC
Q psy8591 82 EYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKT 121 (570)
Q Consensus 82 el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF 121 (570)
...++++..|+.++.+ ++++..+.+|+|
T Consensus 123 ---~~t~~al~~~~~~~~~---------~i~i~GvIlN~v 150 (449)
T TIGR00379 123 ---SRSAAAIVLGYRSFDP---------GVKLKGVILNRV 150 (449)
T ss_pred ---HHHHHHHHHHHHhhCC---------CCCEEEEEEECC
Confidence 1235677777765332 566668899999
No 62
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=41.81 E-value=14 Score=34.89 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=30.3
Q ss_pred hhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhc
Q psy8591 104 PILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSN 172 (570)
Q Consensus 104 Ni~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~ 172 (570)
.+.. +|+|+ ++++|+++-..... +.-..+++.+.+|+.+-.. .|.-+.|=.+|.+
T Consensus 100 ql~e-~g~P~-vvvlN~~D~a~~~g------~~id~~~Ls~~Lg~pvi~~------sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 100 QLLE-LGIPV-VVVLNKMDEAERKG------IEIDAEKLSERLGVPVIPV------SARTGEGIDELKD 154 (156)
T ss_dssp HHHH-TTSSE-EEEEETHHHHHHTT------EEE-HHHHHHHHTS-EEEE------BTTTTBTHHHHHH
T ss_pred HHHH-cCCCE-EEEEeCHHHHHHcC------CEECHHHHHHHhCCCEEEE------EeCCCcCHHHHHh
Confidence 3345 89999 99999983211111 1123677777888864333 2335555555543
No 63
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=41.72 E-value=25 Score=32.20 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHH-HHHHHhCCc----eeeeCCCCceEeeeccCchhhh
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYR-QLCLFVGLF----FEVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR-~~C~~lGv~----fav~~~~g~V~s~~~~Gg~eLa 171 (570)
....|+.-+.. ++++. .+++||.+.. ..++ .++.+.++ ++++..|.. +.+.- +-|+-+.|=.+|.
T Consensus 110 ~~~~~l~~~~~-~~~p~-ivvlNK~D~~--~~~~--~~~~~~~~~~l~~~~~~~~~~~~~vi~----~Sa~~g~gi~~Ll 179 (188)
T PF00009_consen 110 QTEEHLKILRE-LGIPI-IVVLNKMDLI--EKEL--EEIIEEIKEKLLKEYGENGEEIVPVIP----ISALTGDGIDELL 179 (188)
T ss_dssp HHHHHHHHHHH-TT-SE-EEEEETCTSS--HHHH--HHHHHHHHHHHHHHTTSTTTSTEEEEE----EBTTTTBTHHHHH
T ss_pred ccccccccccc-cccce-EEeeeeccch--hhhH--HHHHHHHHHHhccccccCccccceEEE----EecCCCCCHHHHH
Confidence 45778888877 99995 9999999553 2222 22223333 555666553 45554 2234555655566
Q ss_pred ccc
Q psy8591 172 NIL 174 (570)
Q Consensus 172 ~~l 174 (570)
+.|
T Consensus 180 ~~l 182 (188)
T PF00009_consen 180 EAL 182 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 64
>PRK05380 pyrG CTP synthetase; Validated
Probab=41.53 E-value=17 Score=40.89 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHhhhHHhhhccccEEEccCC-----------------CCCCCcccccccc------------------------ccccC
Q psy8591 10 KISRNFYDTLLHIAYATQPNR-----------------EYSVSGMEKFFNI------------------------KCRTS 48 (570)
Q Consensus 10 ~~~~~~~~~~l~~DYVVTEAG-----------------FGADLGaEKF~DI------------------------KCR~s 48 (570)
.|.+..++.|...|++|+|.| |..++|.|.|+-| .-|..
T Consensus 121 eI~~~i~~~~~~~dv~i~EiGGTvGDiEs~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~ 200 (533)
T PRK05380 121 EIKERILAAGTDADVVIVEIGGTVGDIESLPFLEAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSI 200 (533)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCccccccccHHHHHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhC
Confidence 466777788888999999999 7789999999887 45889
Q ss_pred CCCCCeEEEE
Q psy8591 49 GKIPDAVVLV 58 (570)
Q Consensus 49 GL~PdavVLV 58 (570)
|+.||.+|.-
T Consensus 201 Gi~pd~i~~R 210 (533)
T PRK05380 201 GIQPDILVCR 210 (533)
T ss_pred CCCCCEEEEe
Confidence 9999988763
No 65
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=41.43 E-value=46 Score=27.62 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=27.4
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+.+.+..+... .+.+. .+.+||.+..+ +.++ ..+.+++++.+.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~-~~~~----~~~~~~~~~~~~~~~ 138 (159)
T cd00154 90 NLDKWLKELKEYAPENIPI-ILVGNKIDLED-QRQV----STEEAQQFAKENGLL 138 (159)
T ss_pred HHHHHHHHHHHhCCCCCcE-EEEEEcccccc-cccc----cHHHHHHHHHHcCCe
Confidence 334444444331 35777 88999985531 2222 347788888886554
No 66
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=41.12 E-value=1.4e+02 Score=24.57 Aligned_cols=108 Identities=4% Similarity=-0.116 Sum_probs=59.6
Q ss_pred cccEEEccCCCCCCCcccccccc--ccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch
Q psy8591 21 HIAYATQPNREYSVSGMEKFFNI--KCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG 98 (570)
Q Consensus 21 ~~DYVVTEAGFGADLGaEKF~DI--KCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL 98 (570)
..++.+...|.|...--.....+ .-...+..||.++|-. |.... .... ......-..++
T Consensus 33 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~~~d~vil~~---------G~ND~---------~~~~-~~~~~~~~~~~ 93 (187)
T cd00229 33 GPGVEVINLGVSGATTADALRRLGLRLALLKDKPDLVIIEL---------GTNDL---------GRGG-DTSIDEFKANL 93 (187)
T ss_pred CCCceEEeecccchhHHHHHhhcchhhhhccCCCCEEEEEe---------ccccc---------cccc-ccCHHHHHHHH
Confidence 44677777777766544443333 3456677899888844 33311 1000 01233334467
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCC--CcccccchhHHHHHHHHHhCC
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVS--QPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd--~EI~~~~~~~~lR~~C~~lGv 148 (570)
.+.|+.+++ ..-++.++.++-....+.. ..-....+.+.++++|.+.+.
T Consensus 94 ~~~i~~~~~-~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd00229 94 EELLDALRE-RAPGAKVILITPPPPPPREGLLGRALPRYNEAIKAVAAENPA 144 (187)
T ss_pred HHHHHHHHH-HCCCCcEEEEeCCCCCCCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 777777775 3333434455543222222 223346778999999999884
No 67
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.76 E-value=92 Score=28.08 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=52.2
Q ss_pred cEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHH
Q psy8591 23 AYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQF 102 (570)
Q Consensus 23 DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHI 102 (570)
+|-+.--|++-+.= ..+++.=.+....+||.|+|-. |...+.. .-+.+.+++++..|.+.|
T Consensus 40 ~~~~~n~g~~G~t~-~~~~~~l~~~~~~~pd~Vii~~---------G~ND~~~---------~~~~~~~~~~l~~li~~i 100 (191)
T cd01836 40 GVRWRLFAKTGATS-ADLLRQLAPLPETRFDVAVISI---------GVNDVTH---------LTSIARWRKQLAELVDAL 100 (191)
T ss_pred ceEEEEEecCCcCH-HHHHHHHHhcccCCCCEEEEEe---------cccCcCC---------CCCHHHHHHHHHHHHHHH
Confidence 45555556554432 1122211124578999998854 4432111 124566777666666666
Q ss_pred HhhhhhcCCCcceeeecCCCCCCCC-Cc----c--cccchhHHHHHHHHHh-CCce
Q psy8591 103 SPILLICGLQKHRTSKNKTSMFDVS-QP----I--TVGKLSKHYRQLCLFV-GLFF 150 (570)
Q Consensus 103 eNi~kvfGVnvfvVAiNkF~~~Dtd-~E----I--~~~~~~~~lR~~C~~l-Gv~f 150 (570)
..-. -+..++++.+--+...+.. .. + ....+.+.++++|.+. |+.|
T Consensus 101 ~~~~--~~~~iiv~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~~ 154 (191)
T cd01836 101 RAKF--PGARVVVTAVPPLGRFPALPQPLRWLLGRRARLLNRALERLASEAPRVTL 154 (191)
T ss_pred HhhC--CCCEEEEECCCCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 5421 2334433332112110000 00 0 1246788899999997 6554
No 68
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=40.43 E-value=32 Score=35.73 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=41.5
Q ss_pred hhhhhHHHHhhhHHhhhccc-----cEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCC
Q psy8591 3 AWRNLFLKISRNFYDTLLHI-----AYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQ 77 (570)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~-----DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~ 77 (570)
...|||-.+-..+|..+... ..+|||.|+=++= + .
T Consensus 204 ~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G---------------------------------~-~------ 243 (310)
T PF00332_consen 204 AYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAG---------------------------------D-P------ 243 (310)
T ss_dssp EESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSS---------------------------------S-T------
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCC---------------------------------C-C------
Confidence 45688888777777765543 4799999976632 1 1
Q ss_pred CCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCC
Q psy8591 78 PLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQ 128 (570)
Q Consensus 78 PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~ 128 (570)
..+.+.-+....||.+|+.. .....+-..+...-|++||++.
T Consensus 244 -------~a~~~nA~~~~~nl~~~~~~--gt~~~~~~~~~~y~F~~FdE~~ 285 (310)
T PF00332_consen 244 -------GATPENAQAYNQNLIKHVLK--GTPLRPGNGIDVYIFEAFDENW 285 (310)
T ss_dssp -------TCSHHHHHHHHHHHHHHCCG--BBSSSBSS---EEES-SB--TT
T ss_pred -------CCCcchhHHHHHHHHHHHhC--CCcccCCCCCeEEEEEEecCcC
Confidence 11344457788899999982 2122221133445688888765
No 69
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=39.64 E-value=28 Score=32.30 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=30.3
Q ss_pred hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 108 ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 108 vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
..+....++.+|+--..+.+++. ++++++|+.+|+.+.+.+
T Consensus 25 ~~~~~~~~~~vdh~~~~~s~~~~------~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 25 RNGIKLIAVHVDHGLREESDEEA------EFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp TTTTEEEEEEEE-STSCCHHHHH------HHHHHHHHHTT-EEEEEE
T ss_pred hcCCCeEEEEEecCCCcccchhH------HHHHHHHHhcCCceEEEE
Confidence 35567778899973255556666 899999999999999886
No 70
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=39.60 E-value=52 Score=30.10 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=44.2
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhccccccccCC
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVESRQTDESHD 189 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~ 189 (570)
++|+ .++.||++..+ +.++ ..+..++++...|+. +.+ +-|+-+.|=.+|-+.|-..+.+.+
T Consensus 106 ~~pi-iiv~NK~Dl~~-~~~~----~~~~~~~l~~~~~~~--~~e----~Sa~~~~~v~~l~~~l~~~~~~~~------- 166 (191)
T cd04112 106 DVVI-MLLGNKADMSG-ERVV----KREDGERLAKEYGVP--FME----TSAKTGLNVELAFTAVAKELKHRK------- 166 (191)
T ss_pred CCcE-EEEEEcccchh-cccc----CHHHHHHHHHHcCCe--EEE----EeCCCCCCHHHHHHHHHHHHHHhc-------
Confidence 6777 78899995422 2223 124567777777764 333 223455566666666633333222
Q ss_pred CCccccccccccccceecccccc
Q psy8591 190 MGHFEYGFPSMLIPSYVVSHSKE 212 (570)
Q Consensus 190 ~~~Fe~~y~~~~~~~~~~~~~~~ 212 (570)
.++...+..-++.|.-.|+|+
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~ 187 (191)
T cd04112 167 --YEQPDEGKFKISDYVTKQKKI 187 (191)
T ss_pred --cccCCCCcEEeccccCccccc
Confidence 222333333366777777664
No 71
>KOG0132|consensus
Probab=39.60 E-value=20 Score=42.34 Aligned_cols=113 Identities=17% Similarity=0.050 Sum_probs=76.3
Q ss_pred cccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCC-hHHHHhhhhchHHHHHhhhhhcCCCcce
Q psy8591 37 MEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVS-TSTEHQGCIKGRGQFSPILLICGLQKHR 115 (570)
Q Consensus 37 aEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eEN-ldaLekG~aNL~kHIeNi~kvfGVnvfv 115 (570)
-|||.. ||.-.-..|-.-||=.-||+-++.-|..+ +.-..+ ..-+..+|+||.+-+...+. -+ +
T Consensus 47 VeKfi~-kCkpe~Kl~gLYVIDSIVRqsrhq~~~~k---------d~F~prf~~n~~~tf~~L~~c~~edks----~i-I 111 (894)
T KOG0132|consen 47 VEKFIK-KCKPEYKLPGLYVIDSIVRQSRHQFGKEK---------DVFGPRFSKNFTGTFQNLYECPQEDKS----DI-I 111 (894)
T ss_pred HHHHHH-hCCcccccCeeEEehHHHHHHHHhhcccc---------cccCCccchhHHHHHHHHHhcCHHHHH----HH-H
Confidence 378887 99999999999999999999998888662 222333 34577889999887766554 11 2
Q ss_pred eeecCCCCCC--CCCcccccchhHHHHHHHHHhCC--c-eeeeCCCCceEeeeccCchhhhccc
Q psy8591 116 TSKNKTSMFD--VSQPITVGKLSKHYRQLCLFVGL--F-FEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 116 VAiNkF~~~D--td~EI~~~~~~~~lR~~C~~lGv--~-fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
-.+|.|-... -+++| .-|++.|...|. + ....+..+. .+.+++.++..+
T Consensus 112 rvlNlwqkn~VfK~e~I------qpLlDm~~~s~~~~~p~~~~~~~p~----~~v~~~~~sda~ 165 (894)
T KOG0132|consen 112 RVLNLWQKNNVFKSEII------QPLLDMADGSGLSVFPKSPLQALPS----PGVLQAPSSDAL 165 (894)
T ss_pred HhhhhhhcccchhHHHH------HHHHHHHhccCccccCCCccCCCCC----ccccCCCchhhh
Confidence 2355551111 23466 899999999988 2 444444444 566777777766
No 72
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=39.37 E-value=29 Score=37.34 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeC-C-CCceEeeeccCchhhhcccCcchhccccccccCCCCccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN-P-SGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFP 198 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~-~-~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~ 198 (570)
|..++.++.. .|--.++++++|+++|+.+.+.. . -...+.+...|-++|.-.. +-.++| ....|.|.-|
T Consensus 54 ~~~~~~~~~~-~G~~~DLl~~ia~~LGv~~e~v~~~~~~~ll~aL~~G~iDi~~~~------lt~T~e--R~~~~~FS~P 124 (482)
T PRK10859 54 LTYYIGNDGP-TGFEYELAKRFADYLGVKLEIKVRDNISQLFDALDKGKADLAAAG------LTYTPE--RLKQFRFGPP 124 (482)
T ss_pred CeeEecCCCc-ccHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHHhCCCCCEEecc------CcCChh--hhccCcccCC
Confidence 3333444444 68888999999999999998872 1 1223344556666643211 233444 3467888777
Q ss_pred cccccceeccccccc-c-cccccccCceeeEEeecch
Q psy8591 199 SMLIPSYVVSHSKED-V-SRDRISSGYTLGVVRTSGT 233 (570)
Q Consensus 199 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 233 (570)
-+.....+|.+.... . +-+- -.|.++||++-|..
T Consensus 125 y~~~~~~lv~r~~~~~i~~l~d-L~Gk~I~V~~gS~~ 160 (482)
T PRK10859 125 YYSVSQQLVYRKGQPRPRSLGD-LKGGTLTVAAGSSH 160 (482)
T ss_pred ceeeeEEEEEeCCCCCCCCHHH-hCCCeEEEECCCcH
Confidence 777776666654321 1 1111 24899999876643
No 73
>KOG1145|consensus
Probab=39.33 E-value=84 Score=36.53 Aligned_cols=116 Identities=19% Similarity=0.163 Sum_probs=73.8
Q ss_pred HhhhccccEEEccCCC----------CCCCcccc--cccc-------ccccCCC-CCCeEEEEEeehhhhhcCCCCCCCC
Q psy8591 16 YDTLLHIAYATQPNRE----------YSVSGMEK--FFNI-------KCRTSGK-IPDAVVLVTTVRALKMHGGGPSVVS 75 (570)
Q Consensus 16 ~~~~l~~DYVVTEAGF----------GADLGaEK--F~DI-------KCR~sGL-~PdavVLVATVRALK~HGG~~~v~~ 75 (570)
.|.+...+.+-+|+|= +.+-| ++ |+|- ++|.-|. .-|-+|||...- .|+
T Consensus 170 LD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAad-----DGV----- 238 (683)
T KOG1145|consen 170 LDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAAD-----DGV----- 238 (683)
T ss_pred HHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEEcc-----CCc-----
Confidence 4555566777778771 12333 44 7775 7888887 678899887321 122
Q ss_pred CCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHH------HHHhCCc
Q psy8591 76 GQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQL------CLFVGLF 149 (570)
Q Consensus 76 G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~------C~~lGv~ 149 (570)
..--+++ .+|+.+ -++|+ +|||||-+. -.+ ...+.+|+| |+.+|=.
T Consensus 239 --------mpQT~Ea--------IkhAk~----A~Vpi-VvAinKiDk--p~a-----~pekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 239 --------MPQTLEA--------IKHAKS----ANVPI-VVAINKIDK--PGA-----NPEKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred --------cHhHHHH--------HHHHHh----cCCCE-EEEEeccCC--CCC-----CHHHHHHHHHHcCccHHHcCCc
Confidence 2223444 345554 67899 999999832 122 234566665 5667777
Q ss_pred eeeeCCCCceEeeeccCchhhhccc
Q psy8591 150 FEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 150 fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
+.+.. +-|+-+.|=..|++.+
T Consensus 291 VQvip----iSAl~g~nl~~L~eai 311 (683)
T KOG1145|consen 291 VQVIP----ISALTGENLDLLEEAI 311 (683)
T ss_pred eeEEE----eecccCCChHHHHHHH
Confidence 77776 6678888888888876
No 74
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=39.03 E-value=1.7e+02 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=21.7
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+|++. .+.+|++... .. ..+.++++|+++|+.
T Consensus 142 ~~~~~-~vV~N~~~~~---~~-----~~~~~~~~~~~~~~~ 173 (179)
T cd03110 142 FGIPV-GVVINKYDLN---DE-----IAEEIEDYCEEEGIP 173 (179)
T ss_pred cCCCE-EEEEeCCCCC---cc-----hHHHHHHHHHHcCCC
Confidence 57777 6789998432 11 236678889888875
No 75
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=38.05 E-value=17 Score=39.68 Aligned_cols=69 Identities=6% Similarity=0.063 Sum_probs=36.1
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH-hCCceeeeCCCCceEeeeccCchhhhcccC
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF-VGLFFEVTNPSGVVVSAVDFGSGELSNILP 175 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~-lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~ 175 (570)
++|+..+.. +|+....+++||-+..|.+ ++ .+..+.++++... .+....+.- |-|+-+.|=.+|.+.|.
T Consensus 160 ~ehl~i~~~-lgi~~iIVvlNKiDlv~~~-~~--~~~~~ei~~~l~~~~~~~~~iip----VSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 160 SEHLAAVEI-MKLKHIIILQNKIDLVKEA-QA--QDQYEEIRNFVKGTIADNAPIIP----ISAQLKYNIDVVLEYIC 229 (460)
T ss_pred HHHHHHHHH-cCCCcEEEEEecccccCHH-HH--HHHHHHHHHHHHhhccCCCeEEE----eeCCCCCCHHHHHHHHH
Confidence 567776555 8887557899998554322 11 1222344444333 122334443 33345555556666663
No 76
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=37.78 E-value=32 Score=35.80 Aligned_cols=76 Identities=17% Similarity=0.072 Sum_probs=56.4
Q ss_pred hhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhc
Q psy8591 93 QGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSN 172 (570)
Q Consensus 93 kG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~ 172 (570)
++-.-++.|...+++ -|+++.+++.-.| .|++ |.+.+|++|+.-|.++.+.- |..||.+.-.
T Consensus 68 AS~~Av~e~~~~~L~-~g~d~iV~SVGAL----ad~~-----l~erl~~lak~~~~rv~~pS--------GAiGGlD~l~ 129 (255)
T COG1712 68 ASPEAVREYVPKILK-AGIDVIVMSVGAL----ADEG-----LRERLRELAKCGGARVYLPS--------GAIGGLDALA 129 (255)
T ss_pred CCHHHHHHHhHHHHh-cCCCEEEEechhc----cChH-----HHHHHHHHHhcCCcEEEecC--------ccchhHHHHH
Confidence 344445566666666 6788888888888 3443 46889999999999988873 6688988777
Q ss_pred ccC-cchhccccccc
Q psy8591 173 ILP-GFLVESRQTDE 186 (570)
Q Consensus 173 ~l~-~f~~~~r~~de 186 (570)
.+- |++.+++++--
T Consensus 130 aar~g~i~~V~lttr 144 (255)
T COG1712 130 AARVGGIEEVVLTTR 144 (255)
T ss_pred HhhcCCeeEEEEEee
Confidence 666 88988888754
No 77
>PRK00098 GTPase RsgA; Reviewed
Probab=37.73 E-value=73 Score=32.37 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+.+..+.. .+++. .+.+||.+-.+..+.+ ..+.++++++|+.
T Consensus 101 dr~L~~~~~-~~ip~-iIVlNK~DL~~~~~~~------~~~~~~~~~~g~~ 143 (298)
T PRK00098 101 DRFLVLAEA-NGIKP-IIVLNKIDLLDDLEEA------RELLALYRAIGYD 143 (298)
T ss_pred HHHHHHHHH-CCCCE-EEEEEhHHcCCCHHHH------HHHHHHHHHCCCe
Confidence 444444444 68888 8899998553222223 3455666777865
No 78
>KOG0190|consensus
Probab=37.73 E-value=56 Score=36.71 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=77.9
Q ss_pred hhhhhHHHHhhhHHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCC-C
Q psy8591 3 AWRNLFLKISRNFYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLK-P 81 (570)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~-~ 81 (570)
.||+.|..+.+.|-+ -+..-|+ .+.-||-.+ .||.++|...- +.+++ +..++|... +. +
T Consensus 272 ~~~~~~~~vAk~f~~-~l~Fi~~-d~e~~~~~~---~~~Gl~~~~~~------~~~v~---~~~~~~Ky~------~~~e 331 (493)
T KOG0190|consen 272 ELRKKFEEVAKKFKG-KLRFILI-DPESFARVL---EFFGLEEEQLP------IRAVI---LNEDGSKYP------LEEE 331 (493)
T ss_pred HHHHHHHHHHHhccc-ceEEEEE-ChHHhhHHH---HhcCcccccCC------eeEEe---ecccccccc------Cccc
Confidence 499999999999977 3333344 566666644 48888887542 23332 334566653 23 3
Q ss_pred ccccCChHHHHhhhh--chHHHHHhhhh---hcCCCcceeeecCCC--CCCCCCcccc----------cchhHHHHHHHH
Q psy8591 82 EYTEVSTSTEHQGCI--KGRGQFSPILL---ICGLQKHRTSKNKTS--MFDVSQPITV----------GKLSKHYRQLCL 144 (570)
Q Consensus 82 el~eENldaLekG~a--NL~kHIeNi~k---vfGVnvfvVAiNkF~--~~Dtd~EI~~----------~~~~~~lR~~C~ 144 (570)
++..+|++..-+++. ++..|+..-.- .-+.|+.++.-+.|+ -.|+...+-| ..|...|.+|++
T Consensus 332 ~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe 411 (493)
T KOG0190|consen 332 ELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAE 411 (493)
T ss_pred cccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHH
Confidence 366667777777765 46666622100 222445444444442 2334443311 134444555554
Q ss_pred HhCCceeeeCCCCceEeeeccCchhhh
Q psy8591 145 FVGLFFEVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 145 ~lGv~fav~~~~g~V~s~~~~Gg~eLa 171 (570)
. ..+.+.+|||+.+...-|+.
T Consensus 412 ~------~~~~~~vviAKmDaTaNd~~ 432 (493)
T KOG0190|consen 412 K------YKDDENVVIAKMDATANDVP 432 (493)
T ss_pred H------hcCCCCcEEEEeccccccCc
Confidence 4 23345678888877654443
No 79
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=36.81 E-value=70 Score=27.26 Aligned_cols=63 Identities=14% Similarity=-0.044 Sum_probs=36.5
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
.++..+....++|+ .+.+||.+..+..+ . .....+++|.++|+. +.+ +-|+-+.|=.+|-+.+
T Consensus 95 ~~~~~~~~~~~~pi-iiv~NK~D~~~~~~-~----~~~~~~~~~~~~~~~--~~~----~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 95 EQILRVKDDDNVPL-LLVGNKCDLEDKRQ-V----SSEEAANLARQWGVP--YVE----TSAKTRQNVEKAFYDL 157 (164)
T ss_pred HHHHHhcCCCCCCE-EEEEEccccccccc-c----CHHHHHHHHHHhCCe--EEE----eeCCCCCCHHHHHHHH
Confidence 33333332367898 88999996544211 1 226677888888864 333 3345555655665554
No 80
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.62 E-value=37 Score=34.19 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=39.4
Q ss_pred hHHHHHhhhh---h-cCCCcceeeecC-CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC
Q psy8591 98 GRGQFSPILL---I-CGLQKHRTSKNK-TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS 156 (570)
Q Consensus 98 L~kHIeNi~k---v-fGVnvfvVAiNk-F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~ 156 (570)
+.++++.++. . .|.|+++=.=|+ |...|-+..+ +...+-..|.++|+..+|.|+.
T Consensus 181 ~l~~l~~~~~~~~~~p~~pil~G~SnkSf~~~~~~r~~----in~~f~~~a~~~Gl~~ai~np~ 240 (252)
T cd00740 181 ALETIDAIRMIKERLPAVKISLGVSNVSFGFNPAAREA----LNSVFLYEAIKAGLDMAIVNAG 240 (252)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEecccccCCCchhHHH----HHHHHHHHHHHcccceeecCcc
Confidence 3344555554 2 389996666676 6444666655 7788889999999999999976
No 81
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.45 E-value=1.7e+02 Score=26.00 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=56.4
Q ss_pred cEEEccCCCCCCCcccccccc----cc-ccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhc
Q psy8591 23 AYATQPNREYSVSGMEKFFNI----KC-RTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIK 97 (570)
Q Consensus 23 DYVVTEAGFGADLGaEKF~DI----KC-R~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aN 97 (570)
++.|.=.|.+-+-... |..+ .+ +...++||.|+|.. |......+ .-..+...+++..
T Consensus 24 ~~~v~N~g~~G~t~~~-~~~~~~~~~~~~l~~~~pd~Vii~~---------G~ND~~~~--------~~~~~~~~~~~~~ 85 (189)
T cd01825 24 GVIYDNLGVNGASASL-LLKWDAEFLQAQLAALPPDLVILSY---------GTNEAFNK--------QLNASEYRQQLRE 85 (189)
T ss_pred ceEEecCccCchhhhh-hhccCHHHHHHHHhhCCCCEEEEEC---------CCcccccC--------CCCHHHHHHHHHH
Confidence 7777777776554432 3222 22 34567899988866 33311110 1235678888888
Q ss_pred hHHHHHhhhhhcCCCcceeeec-CCCCC-----CCCCcccccchhHHHHHHHHHhCCc
Q psy8591 98 GRGQFSPILLICGLQKHRTSKN-KTSMF-----DVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiN-kF~~~-----Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
|..||..... +..+..+..- .+... ..... +.++.+.++++|++.|+.
T Consensus 86 li~~i~~~~~--~~~iv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~v~ 139 (189)
T cd01825 86 FIKRLRQILP--NASILLVGPPDSLQKTGAGRWRTPPG--LDAVIAAQRRVAKEEGIA 139 (189)
T ss_pred HHHHHHHHCC--CCeEEEEcCCchhccCCCCCcccCCc--HHHHHHHHHHHHHHcCCe
Confidence 8888876422 2222111111 01000 01122 356778899999999864
No 82
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=36.43 E-value=1.6e+02 Score=26.19 Aligned_cols=107 Identities=16% Similarity=0.047 Sum_probs=53.0
Q ss_pred cccEEEccCCCCCCC---ccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhc
Q psy8591 21 HIAYATQPNREYSVS---GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIK 97 (570)
Q Consensus 21 ~~DYVVTEAGFGADL---GaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aN 97 (570)
...+-|--.|++.+- +.+++ .-.....+||.++|-. |...+.. ..+.+..++++..
T Consensus 21 ~~~~~v~n~g~~G~t~~~~~~~~---~~~~~~~~pd~v~i~~---------G~ND~~~---------~~~~~~~~~~~~~ 79 (174)
T cd01841 21 GKGKTVNNLGIAGISSRQYLEHI---EPQLIQKNPSKVFLFL---------GTNDIGK---------EVSSNQFIKWYRD 79 (174)
T ss_pred cCCCeEEecccccccHHHHHHHH---HHHHHhcCCCEEEEEe---------ccccCCC---------CCCHHHHHHHHHH
Confidence 345666666666553 22222 1233456899988865 4442211 1245566665555
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCC---CCCcccccchhHHHHHHHHHhCCce
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFD---VSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~D---td~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
|...+.... -+..++...+--+...+ ....-.+.++.+++|++|.+.|+.|
T Consensus 80 l~~~~~~~~--p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~ 133 (174)
T cd01841 80 IIEQIREEF--PNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPELGVTF 133 (174)
T ss_pred HHHHHHHHC--CCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 555444311 12333222222220100 0111134678899999999998543
No 83
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=36.13 E-value=49 Score=27.59 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=28.7
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++.+. .+.+||.+..+..+++ .+.+++++...+.. .+.. +-++.+.|=.+|-+.|
T Consensus 110 ~~~~~-iiv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~-~~~~----~s~~~~~~~~~l~~~l 164 (168)
T cd04163 110 SKTPV-ILVLNKIDLVKDKEDL-----LPLLEKLKELGPFA-EIFP----ISALKGENVDELLEEI 164 (168)
T ss_pred hCCCE-EEEEEchhccccHHHH-----HHHHHHHHhccCCC-ceEE----EEeccCCChHHHHHHH
Confidence 57787 7899999554333333 34455554444322 2222 2334555555555544
No 84
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=35.94 E-value=1.1e+02 Score=28.80 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=15.7
Q ss_pred HHHhhhHHhhhccccEEEccCC
Q psy8591 9 LKISRNFYDTLLHIAYATQPNR 30 (570)
Q Consensus 9 ~~~~~~~~~~~l~~DYVVTEAG 30 (570)
.+|.+.|-++...+||||-|..
T Consensus 91 ~~i~~~~~~l~~~~D~viIEg~ 112 (222)
T PRK00090 91 EKISAALRRLAQQYDLVLVEGA 112 (222)
T ss_pred HHHHHHHHHHHhhCCEEEEECC
Confidence 3455555567788999999943
No 85
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=35.69 E-value=87 Score=33.91 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=28.5
Q ss_pred Hhhhc-cccEEEccC-------CCCCCCccccccccccccCCCCCCeEEEEEeehhhhhc
Q psy8591 16 YDTLL-HIAYATQPN-------REYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMH 67 (570)
Q Consensus 16 ~~~~l-~~DYVVTEA-------GFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~H 67 (570)
|.+.. ..||++-|+ +||.-+| +..|.+||++|||- |.-.+|
T Consensus 216 ~~~~e~~~Dii~VEGQgsl~HP~y~vtl~---------il~gs~PDavvL~H--~P~r~~ 264 (339)
T COG3367 216 YEAEEKNPDIIFVEGQGSLTHPAYGVTLG---------ILHGSAPDAVVLCH--DPNRKY 264 (339)
T ss_pred HHhhhcCCCEEEEeccccccCCCcccchh---------hhcCCCCCeEEEEe--cCCCcc
Confidence 44555 788998886 4444444 57899999999986 555444
No 86
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=35.22 E-value=28 Score=37.69 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=48.5
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc---eeeeCCCCceEeeeccCc--------
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF---FEVTNPSGVVVSAVDFGS-------- 167 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~---fav~~~~g~V~s~~~~Gg-------- 167 (570)
+.||=-.+. +|++..+|.+||-++-| |+|+ +.-....+|+|..++|+. .+|.- -|+..++-
T Consensus 117 rEHiLlarq-vGvp~ivvflnK~Dmvd-d~el-lelVemEvreLLs~y~f~gd~~Pii~-----gSal~ale~~~~~~~~ 188 (394)
T COG0050 117 REHILLARQ-VGVPYIVVFLNKVDMVD-DEEL-LELVEMEVRELLSEYGFPGDDTPIIR-----GSALKALEGDAKWEAK 188 (394)
T ss_pred hhhhhhhhh-cCCcEEEEEEecccccC-cHHH-HHHHHHHHHHHHHHcCCCCCCcceee-----chhhhhhcCCcchHHH
Confidence 457766566 99999999999998877 4444 344456789999999987 33442 22444443
Q ss_pred -hhhhcccCcchh
Q psy8591 168 -GELSNILPGFLV 179 (570)
Q Consensus 168 -~eLa~~l~~f~~ 179 (570)
.||.+.++.++-
T Consensus 189 i~eLm~avd~yip 201 (394)
T COG0050 189 IEELMDAVDSYIP 201 (394)
T ss_pred HHHHHHHHHhcCC
Confidence 556666655543
No 87
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=34.89 E-value=13 Score=35.27 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=66.7
Q ss_pred ChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccC
Q psy8591 87 STSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFG 166 (570)
Q Consensus 87 NldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~G 166 (570)
+++.|++|...|..++.++.+ -|..+ +..+-- +++.| +.+-+.+.+++..+ .+.|
T Consensus 10 ~l~~v~~g~~~l~~~l~~~~~-~g~~i--vV~Da~----t~~DL------~~ia~a~~~~~~~~------------l~vG 64 (223)
T PF07005_consen 10 DLEDVRRGPEALSAALAALQA-EGARI--VVFDAE----TDEDL------DAIAEALLELGRRV------------LWVG 64 (223)
T ss_dssp -HHHHCC-HHHHHHHHHHHHH-TTECE--EEE-BS----SCHHH------HHHHHHCTT-S---------------EEEE
T ss_pred EHHHHhCcHHHHHHHHHHHHh-CCCcE--EEEecC----CHHHH------HHHHHHHHhCCCce------------EEec
Confidence 678899999999999999988 55544 233333 35555 55555555544333 5678
Q ss_pred chhhhcccCcchhccccccccCCCCccccccccccccceecccccccccccccc----cCceeeEEeecchhh-----hh
Q psy8591 167 SGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSYVVSHSKEDVSRDRIS----SGYTLGVVRTSGTRM-----LN 237 (570)
Q Consensus 167 g~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~ 237 (570)
+..|++.|+..+..-... ..+.......--|..+|+-|-..+++..|. .|+.. +.-.-.++ ++
T Consensus 65 sagla~aL~~~~~~~~~~------~~~~~~~~~~~~~~Lvv~GS~s~~T~~Qi~~l~~~~~~~--i~l~~~~l~~~~~~~ 136 (223)
T PF07005_consen 65 SAGLAAALARALASPPEQ------PSQPPLPSPSRGPVLVVVGSVSPVTRRQIAYLEQAGVPV--IELDPEQLLDEAEIE 136 (223)
T ss_dssp SCHHHHHHHHHHHTT--C---------CCCCS--SSEEEEEE---SHHHHHHHHHH-CCTS-E--EE--HHHCCHCCHHH
T ss_pred chHHHHHHHhhhccCccc------ccccccccCCCCCeEEEEcCCCHHHHHHHHHHHHCCCcE--EEechhhhcCHHHHH
Confidence 888999996655521111 111111111145777888887778877543 44443 22222233 34
Q ss_pred hhhhccccccCCC
Q psy8591 238 ALVTDATVPLKQP 250 (570)
Q Consensus 238 ~~~~~~~~~~~~~ 250 (570)
.++..+.--|.+-
T Consensus 137 ~~~~~~~~~l~~g 149 (223)
T PF07005_consen 137 RVAAEIRAALQQG 149 (223)
T ss_dssp HHHHHHHCTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 5555555555554
No 88
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=34.73 E-value=17 Score=32.99 Aligned_cols=38 Identities=16% Similarity=0.540 Sum_probs=25.8
Q ss_pred HHhhhHHhhh-ccccEEEccCCCCCCCccccccccccccCCCCCCeEE
Q psy8591 10 KISRNFYDTL-LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVV 56 (570)
Q Consensus 10 ~~~~~~~~~~-l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavV 56 (570)
.++++||+.+ -..+|+| ++|=||....+.- |+.||.+|
T Consensus 3 ~~p~~~~~~l~~~~~~~i-----~aDgGa~~l~~~~----g~~Pd~ii 41 (123)
T PF04263_consen 3 QLPKDFFKNLWKNADFII-----AADGGANRLYELF----GIKPDLII 41 (123)
T ss_dssp TS-TTHHHHHHHTTSEEE-----EETTHHHHHHHTT----TT--SEEE
T ss_pred CCCHHHHHhhhhcCCEEE-----EEchHHHHHHHhc----CCCCCEEE
Confidence 4678888864 5566887 8999998765432 99999885
No 89
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=34.72 E-value=52 Score=32.09 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=48.2
Q ss_pred hhhhhHHHHhhhHHhhhccc-cEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCC
Q psy8591 3 AWRNLFLKISRNFYDTLLHI-AYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP 81 (570)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~-DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~ 81 (570)
-|+.||-|-..|. ++--|. .|++++.-|= .-+|+.. |+
T Consensus 70 ~W~~lFgk~aD~L-kt~d~~~~Y~i~Dn~~~----~~~~iS~------------------------------------p~ 108 (168)
T PTZ00391 70 VWKYLFGHSSDLL-KSQDSDDEYMINDKNLL----LNKFISV------------------------------------PK 108 (168)
T ss_pred HHHHHhCchhhhh-cccCCCCeEEEEeCchh----heeeeec------------------------------------cc
Confidence 5999999999988 666554 4999988752 2233321 23
Q ss_pred ccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeec
Q psy8591 82 EYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKN 119 (570)
Q Consensus 82 el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiN 119 (570)
++..-|..+.-.|+ |+-++.-+|+++.|+|-+
T Consensus 109 ~~~~~~~~aF~~GI------I~G~L~~~Gf~a~VTA~~ 140 (168)
T PTZ00391 109 DLGHINCAAFAAGI------VEGILCSAEFPANVTAHT 140 (168)
T ss_pred cccccchhhhhHHH------HHHHHhhCCCCcEEEEEe
Confidence 44445677888887 777777799999777754
No 90
>CHL00071 tufA elongation factor Tu
Probab=34.45 E-value=34 Score=36.17 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=33.2
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.-+.|+..+.+ +|++.+++++||++..|.+ ++ ...+.+.++++.+.+|+
T Consensus 115 qt~~~~~~~~~-~g~~~iIvvvNK~D~~~~~-~~-~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 115 QTKEHILLAKQ-VGVPNIVVFLNKEDQVDDE-EL-LELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHH-cCCCEEEEEEEccCCCCHH-HH-HHHHHHHHHHHHHHhCC
Confidence 34567777776 8999658899999664422 22 23455677777777776
No 91
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=34.29 E-value=52 Score=28.73 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC------------ceeeeCCCCceEeeeccCch
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL------------FFEVTNPSGVVVSAVDFGSG 168 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv------------~fav~~~~g~V~s~~~~Gg~ 168 (570)
++..+.. .+.++ .+.+||.+..+. +++ .+..+.+++..+..|. ...+.. +-|+-+.|-.
T Consensus 106 ~~~~~~~-~~~~i-~iv~nK~D~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~Sa~~g~gi~ 176 (189)
T cd00881 106 HLRIARE-GGLPI-IVAINKIDRVGE-EDL--EEVLREIKELLGLIGFISTKEEGTRNGLLVPIVP----GSALTGIGVE 176 (189)
T ss_pred HHHHHHH-CCCCe-EEEEECCCCcch-hcH--HHHHHHHHHHHccccccchhhhhcccCCcceEEE----EecccCcCHH
Confidence 3444444 67888 889999855431 222 2223445555555443 233333 3345666666
Q ss_pred hhhccc
Q psy8591 169 ELSNIL 174 (570)
Q Consensus 169 eLa~~l 174 (570)
+|.+.|
T Consensus 177 ~l~~~l 182 (189)
T cd00881 177 ELLEAI 182 (189)
T ss_pred HHHHHH
Confidence 666655
No 92
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=33.90 E-value=31 Score=37.44 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=55.4
Q ss_pred ccccCChHHHHhhhhchHHHHHhhhh----hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCC
Q psy8591 82 EYTEVSTSTEHQGCIKGRGQFSPILL----ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSG 157 (570)
Q Consensus 82 el~eENldaLekG~aNL~kHIeNi~k----vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g 157 (570)
++.++.+..+++-+..|...+++++. .-..|+ .+-|--=.+-|+.. |-.|.|-.+|.+||...|..++|.+.|
T Consensus 79 ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knv-ilEIRagtGGdEAa-lFagDLfrMY~rYAe~kgWk~ei~s~s- 155 (363)
T COG0216 79 EMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNI-ILEIRAGTGGDEAA-LFAGDLFRMYSRYAESKGWKVEILSAS- 155 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCe-EEEEecCCCchHHH-HHHHHHHHHHHHHHHhCCCEEEEeecC-
Confidence 45566777888888888888888775 344555 22333221444433 458999999999999999999999866
Q ss_pred ceEeeeccCc
Q psy8591 158 VVVSAVDFGS 167 (570)
Q Consensus 158 ~V~s~~~~Gg 167 (570)
..+.||
T Consensus 156 ----e~~~GG 161 (363)
T COG0216 156 ----ESELGG 161 (363)
T ss_pred ----cccCCC
Confidence 445555
No 93
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.90 E-value=1.8e+02 Score=26.08 Aligned_cols=18 Identities=6% Similarity=0.085 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHhCCce
Q psy8591 133 GKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 133 ~~~~~~lR~~C~~lGv~f 150 (570)
..+.+.++++|.+.|+.+
T Consensus 134 ~~~~~~~~~~a~~~~~~~ 151 (188)
T cd01827 134 KEIQPMIDKIAKKLNLKL 151 (188)
T ss_pred HHHHHHHHHHHHHcCCcE
Confidence 456789999999988764
No 94
>KOG2638|consensus
Probab=33.80 E-value=37 Score=37.95 Aligned_cols=79 Identities=16% Similarity=0.034 Sum_probs=50.0
Q ss_pred hhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch---HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHH
Q psy8591 63 ALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG---RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHY 139 (570)
Q Consensus 63 ALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL---~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~l 139 (570)
-||.+||... .-|.-=|+.+.+ ++.|+.=| .++|+|+++.|++++--+..|-| .+|.|- .+.|
T Consensus 106 vlKLNGGlGt-tmGc~gPKS~ie-----VR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSf-nTdedT-------~kil 171 (498)
T KOG2638|consen 106 VLKLNGGLGT-TMGCKGPKSVIE-----VRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSF-NTDEDT-------QKIL 171 (498)
T ss_pred EEEecCCcCC-ccccCCCceeEE-----EcCCCchhHHHHHHHHHHHhhcCCCCCEEEeccc-ccchHH-------HHHH
Confidence 3789998652 223222333322 33343322 47899999989999988899999 544433 4678
Q ss_pred HHHHHHhCCceeeeCCC
Q psy8591 140 RQLCLFVGLFFEVTNPS 156 (570)
Q Consensus 140 R~~C~~lGv~fav~~~~ 156 (570)
++|... .++...-+||
T Consensus 172 ~ky~~~-kv~i~TF~QS 187 (498)
T KOG2638|consen 172 KKYAGS-KVDIKTFNQS 187 (498)
T ss_pred HHhcCC-ceeEEEeccc
Confidence 888766 6666667766
No 95
>PF02818 PPAK: PPAK motif; InterPro: IPR004168 PPAK is a repeated protein motif found in the PEVK (Pro-Glu-Val-Lys) domain of the titin protein and in a number of other proteins. Titin (2.7.11.1 from EC) is a giant elastic protein found in striated muscle that is a key component in the assembly and functioning of sarcomeres []. PPAK motifs (PPAK refers to the four amino acids found at the beginning of the motif) occur 60 times in human soleus titin []. PPAK motifs occur in groups of 2-12 that are separated by regions rich in glutamic acid (approximately 45%) and termed polyE segments. The charge fluctuation between the PPAK and polyE regions suggests ionic interactions between these segments and their involvement in the elastic function of titin.
Probab=33.39 E-value=35 Score=25.09 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=11.8
Q ss_pred CCCCCCcccccccccCCCCCC
Q psy8591 336 PTKVPKVQSIISTKVPKVQST 356 (570)
Q Consensus 336 PTkVP~v~tk~~TkVPe~~t~ 356 (570)
|++||+++++ .|+|....
T Consensus 2 PaKVpE~pKk---~V~EeKv~ 19 (28)
T PF02818_consen 2 PAKVPEVPKK---IVPEEKVP 19 (28)
T ss_pred CccCCccccc---cccccccc
Confidence 5677887777 56665433
No 96
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=32.66 E-value=2.1e+02 Score=28.15 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=49.8
Q ss_pred HhhhHHhhhccccEEEccCCCCCCCccccccc-cccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChH
Q psy8591 11 ISRNFYDTLLHIAYATQPNREYSVSGMEKFFN-IKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTS 89 (570)
Q Consensus 11 ~~~~~~~~~l~~DYVVTEAGFGADLGaEKF~D-IKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENld 89 (570)
+.+.+-.+...+||++=-++ +++- .+ +-++.+-..-|.++||+|--.+-+
T Consensus 106 l~~~l~~~~~~yD~vlID~~--~~~~----~~~~~~~~al~aad~vlip~~p~~~sl----------------------- 156 (273)
T PRK13232 106 LLENLGAYTDDLDYVFYDVL--GDVV----CGGFAMPIREGKAKEIYIVASGELMAI----------------------- 156 (273)
T ss_pred HHHHcccccccCCEEEEecC--CCee----ECCEeccccccccceEEEecCchHHHH-----------------------
Confidence 44444444456899998883 2221 11 222222234578888875443321
Q ss_pred HHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 90 TEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 90 aLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.|+.+|.+.|+.+++ .+++...+.+|++ ..+.+. +.+.++.+.+|.
T Consensus 157 ---~~~~~~~k~l~~~~~-~~l~~~GiV~n~~-~~~~~~--------~~~e~l~~~~~~ 202 (273)
T PRK13232 157 ---YAANNICKGLAKFAK-GGARLGGIICNSR-NVDGER--------ELLEAFAKKLGS 202 (273)
T ss_pred ---HHHHHHHHHHHHHhC-CCCceeEEEEeCC-CCCccH--------HHHHHHHHHhCC
Confidence 223346666665544 5666655778877 322222 445556566554
No 97
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=31.42 E-value=56 Score=37.19 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=31.3
Q ss_pred hhHHHHhhhHHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEee
Q psy8591 6 NLFLKISRNFYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTV 61 (570)
Q Consensus 6 ~~~~~~~~~~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATV 61 (570)
.++-+|...|.++....||||-|.+-|.. +..-.++.=.+.+...=+-++||++.
T Consensus 61 ~~~~~I~~~~~~l~~~~D~VLIEGa~~~~-~~~~~~~~na~iA~~L~~pVILV~~~ 115 (684)
T PRK05632 61 ELLEEIVARYHALAKDCDVVLVEGLDPTR-KHPFEFSLNAEIAKNLGAEVVLVSSG 115 (684)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcCCCC-cCcccCchHHHHHHHhCCCEEEEECC
Confidence 34566777777888899999999884443 21111221122222222347778755
No 98
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=31.36 E-value=2.2e+02 Score=25.81 Aligned_cols=52 Identities=8% Similarity=-0.126 Sum_probs=28.0
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCC-CCCCcccccchhHHHHHHHHHhCCcee
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMF-DVSQPITVGKLSKHYRQLCLFVGLFFE 151 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~-Dtd~EI~~~~~~~~lR~~C~~lGv~fa 151 (570)
.+-++.+.+ +|+++..+.+|+.... +..++-.-....+.++++|+.+|....
T Consensus 110 ~~~~~~l~~-~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 110 RKAIDMFKK-VNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred HHHHHHHHh-cCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEE
Confidence 334444445 6788878889987221 111111000013567888888776643
No 99
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=31.20 E-value=85 Score=32.12 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=64.0
Q ss_pred ccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchH
Q psy8591 20 LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGR 99 (570)
Q Consensus 20 l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~ 99 (570)
+.-++.++| +-+.| |-.|..-|.-|. -.+|||+ |-+-..+++=++.=+
T Consensus 97 lr~~W~~~~-pVa~n----r~qD~V~R~vGr--pGVvLVg-------------------------EG~~~Rv~~Ll~~E~ 144 (224)
T PF13829_consen 97 LRRGWRVTE-PVAVN----RTQDAVHRVVGR--PGVVLVG-------------------------EGPPSRVKKLLAQEK 144 (224)
T ss_pred hcCCcccCC-ceeec----CccceEEEecCC--CcEEEEe-------------------------cCCHHHHHHHHHHHH
Confidence 345899999 77777 999998887764 4677776 223456777777788
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF 145 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~ 145 (570)
|+|..+.. ++|+|.+.+.. .+.++-+.||.++++++=..
T Consensus 145 krv~RV~~--~vPV~~i~vG~-----gegQVpL~kL~~~l~KLp~~ 183 (224)
T PF13829_consen 145 KRVARVVG--NVPVHDIIVGN-----GEGQVPLRKLQKTLMKLPRN 183 (224)
T ss_pred HHhccccC--CCCeEEEEecC-----CCCceeHHHHHHHHHhCCcc
Confidence 88888776 88888776644 37788888888888776443
No 100
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=31.01 E-value=1.6e+02 Score=33.33 Aligned_cols=90 Identities=9% Similarity=0.005 Sum_probs=53.6
Q ss_pred ccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchH
Q psy8591 20 LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGR 99 (570)
Q Consensus 20 l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~ 99 (570)
...||+|=|+|.|-.+-+-.++ ..|+++||.. |. + +-++.|-..+++..
T Consensus 156 ~~vD~aVlEvGlgGr~DaTnvi--------~~p~v~vITn-Ig-~---------------------DH~~~LG~Tle~IA 204 (530)
T PLN02881 156 EQVDVAILEVGLGGRLDATNVV--------QKPVVCGITS-LG-Y---------------------DHMEILGDTLGKIA 204 (530)
T ss_pred CCCCEEEEEecCCCCchhhhcc--------CCCCEEEEcc-cc-H---------------------HHHHhhcCCHHHHH
Confidence 3479999999987666544431 1477665532 31 2 22344444455666
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+|=..|-+ -|.++|. +-+ .++-. +.|++.|+++|+...+.+
T Consensus 205 ~~KagI~k-~g~p~vt-~~q------~~ea~------~vl~~~A~e~~a~l~~v~ 245 (530)
T PLN02881 205 GEKAGIFK-PGVPAFT-VPQ------PDEAM------RVLEERASELGVPLQVVE 245 (530)
T ss_pred HHHHHHHh-cCCCEEE-eCC------ChHHH------HHHHHHHHHhCCcEEEec
Confidence 66666666 6777733 211 12223 778999999999877664
No 101
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=30.62 E-value=1.5e+02 Score=31.75 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=60.3
Q ss_pred CCCCeEEEEEeeh--hhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCC--
Q psy8591 50 KIPDAVVLVTTVR--ALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFD-- 125 (570)
Q Consensus 50 L~PdavVLVATVR--ALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~D-- 125 (570)
-.|+++-+||++- ..+|.|....... .+|.++.|+.-+..+.+...+..+ ..|- .+.|-|=--.|
T Consensus 216 ~~pSiaa~Vas~d~~~~~y~~~~~~q~~--------~~e~i~~l~~~~~~~l~~~~~~~~--~~P~-~IiiyRDGvsegq 284 (426)
T cd04657 216 GAPSIAAVVASVDWHLAQYPASVRLQSH--------RQEIIDDLESMVRELLRAFKKATG--KLPE-RIIYYRDGVSEGQ 284 (426)
T ss_pred CCCcEEEEEEecCCcccccceEEEEeCC--------CcchHHHHHHHHHHHHHHHHHHhC--CCCc-eEEEEEcCcCHHH
Confidence 4699999999984 4566655432111 233444444444333333333222 2565 44444420111
Q ss_pred ----CCCcccccchhHHHHHHHHHhCC----ceeee--CCCCc--eEeee-ccCchhhhcccCcchhccccccc
Q psy8591 126 ----VSQPITVGKLSKHYRQLCLFVGL----FFEVT--NPSGV--VVSAV-DFGSGELSNILPGFLVESRQTDE 186 (570)
Q Consensus 126 ----td~EI~~~~~~~~lR~~C~~lGv----~fav~--~~~g~--V~s~~-~~Gg~eLa~~l~~f~~~~r~~de 186 (570)
-+.|| +.+++.|.+++- .+.+. +..=+ .+... ..++....|..||.+++...+..
T Consensus 285 ~~~v~~~E~------~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p 352 (426)
T cd04657 285 FAQVLNEEL------PAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHP 352 (426)
T ss_pred HHHHHHHHH------HHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCC
Confidence 13566 788999998743 23333 10000 01110 11222378999999997766654
No 102
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=30.56 E-value=77 Score=33.20 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=47.5
Q ss_pred EEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhh--------------chHHHHHhhhhhc-CCCcceeeec
Q psy8591 55 VVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCI--------------KGRGQFSPILLIC-GLQKHRTSKN 119 (570)
Q Consensus 55 vVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~a--------------NL~kHIeNi~kvf-GVnvfvVAiN 119 (570)
-+++.-|..|++||-... ..+.+++...+...+. .....+..+.... +.++ .+.+|
T Consensus 28 ~~~C~RC~~l~hy~~~~~--------~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~pi-ilV~N 98 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQD--------VELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPV-LLVGN 98 (360)
T ss_pred CeeecchhhhhccCcccc--------CCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCE-EEEEE
Confidence 577888888999985542 2333444443333221 0011122333312 4566 78999
Q ss_pred CCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 120 KTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 120 kF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
|.+-.+ .+....++.++++++|++.|+.
T Consensus 99 K~DLl~--k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 99 KIDLLP--KSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred chhhCC--CCCCHHHHHHHHHHHHHHcCCC
Confidence 985533 3333456677888899999975
No 103
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=30.44 E-value=1e+02 Score=26.50 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=37.9
Q ss_pred hhchHHHHHhhhhhcC--CCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhc
Q psy8591 95 CIKGRGQFSPILLICG--LQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSN 172 (570)
Q Consensus 95 ~aNL~kHIeNi~kvfG--VnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~ 172 (570)
+.++...++.++...+ +++ .+++||.+..+. .++ ..+.+.+++.+.|+. +.+ +-++-+.|=.+|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~i-ilv~nK~D~~~~-~~~----~~~~~~~~~~~~~~~--~~~----~Sa~~~~~v~~l~~ 155 (161)
T cd01861 88 FDNTDKWIDDVRDERGNDVII-VLVGNKTDLSDK-RQV----STEEGEKKAKELNAM--FIE----TSAKAGHNVKELFR 155 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEE-EEEEEChhcccc-Ccc----CHHHHHHHHHHhCCE--EEE----EeCCCCCCHHHHHH
Confidence 4555556666554344 788 889999854222 222 235677888887754 333 22344555444444
Q ss_pred cc
Q psy8591 173 IL 174 (570)
Q Consensus 173 ~l 174 (570)
.+
T Consensus 156 ~i 157 (161)
T cd01861 156 KI 157 (161)
T ss_pred HH
Confidence 33
No 104
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=30.44 E-value=1.3e+02 Score=25.44 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=27.3
Q ss_pred chHHHHHhhhh---hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 97 KGRGQFSPILL---ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 97 NL~kHIeNi~k---vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
++...+..+.+ ..+.+. .+..||.+..+ .++ ..+.++++|..+|..
T Consensus 90 ~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~~ 138 (162)
T cd04138 90 DIHTYREQIKRVKDSDDVPM-VLVGNKCDLAA--RTV----SSRQGQDLAKSYGIP 138 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCE-EEEEECccccc--cee----cHHHHHHHHHHhCCe
Confidence 44444444433 246777 78999985433 222 236678888888864
No 105
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=29.95 E-value=68 Score=28.77 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHhC--CceeeeCCCCceEeeeccCchhhhc
Q psy8591 134 KLSKHYRQLCLFVG--LFFEVTNPSGVVVSAVDFGSGELSN 172 (570)
Q Consensus 134 ~~~~~lR~~C~~lG--v~fav~~~~g~V~s~~~~Gg~eLa~ 172 (570)
+|-...+++|++.| +-++|.+..|++....+.-|.-+.+
T Consensus 10 ~l~~~a~~~a~~~g~~v~iaVvd~~G~~~~~~r~dga~~~~ 50 (132)
T PF03928_consen 10 KLGDAAVEEARERGLPVSIAVVDAGGHLLAFARMDGAPPDS 50 (132)
T ss_dssp HHHHHHHHHHHHTT---EEEEEETTS-EEEEEE-TTS-TTH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEECCCCEEEEEecCCCcccH
Confidence 46688999999999 5699999999999888766654433
No 106
>PLN03126 Elongation factor Tu; Provisional
Probab=29.85 E-value=47 Score=36.48 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=33.5
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
-+.|+..+.. +|++.+++++||++..| ++++ ...+.+.++++.+++|+
T Consensus 185 t~e~~~~~~~-~gi~~iIvvvNK~Dl~~-~~~~-~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 185 TKEHILLAKQ-VGVPNMVVFLNKQDQVD-DEEL-LELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHH-cCCCeEEEEEecccccC-HHHH-HHHHHHHHHHHHHhcCC
Confidence 4678887777 89997689999996644 2333 33344577777777776
No 107
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=28.90 E-value=24 Score=37.02 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=35.0
Q ss_pred HHHhhhHHhhhcc--ccEEEccCC-----------------CCCCCcccccccc------------------------cc
Q psy8591 9 LKISRNFYDTLLH--IAYATQPNR-----------------EYSVSGMEKFFNI------------------------KC 45 (570)
Q Consensus 9 ~~~~~~~~~~~l~--~DYVVTEAG-----------------FGADLGaEKF~DI------------------------KC 45 (570)
-.|-+.+++.|.. .|++++|.| |..++|-|.|+-| .-
T Consensus 119 deIk~~I~~~a~~~~~Dv~iiEiGGTVGDIEs~pFlEAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~L 198 (276)
T PF06418_consen 119 DEIKERIRRVAKKPEPDVVIIEIGGTVGDIESLPFLEAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKEL 198 (276)
T ss_dssp HHHHHHHHHHHCCCT-SEEEEEEESETTSCCCHHHHHHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCcccccccccHHHHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHH
Confidence 3577788888874 999999998 3456788888777 45
Q ss_pred ccCCCCCCeEEEEE
Q psy8591 46 RTSGKIPDAVVLVT 59 (570)
Q Consensus 46 R~sGL~PdavVLVA 59 (570)
|..|+.||.+|.-+
T Consensus 199 r~~GI~PDilvcRs 212 (276)
T PF06418_consen 199 RSIGIQPDILVCRS 212 (276)
T ss_dssp HHTT---SEEEEEE
T ss_pred HhCCCCCCEEEEcC
Confidence 88999999887633
No 108
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=28.83 E-value=51 Score=30.60 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=50.8
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
|+..|.+.++ .|-.-++++..|+.+|+.+.+.... +....+...|-.++.-. + +-.+.+ ....|.|.=|-
T Consensus 34 ~~~~~~~g~~-~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~g~~D~~~~--~----~~~~~~--r~~~~~fs~p~ 104 (243)
T PRK15007 34 FESIDANNQI-VGFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMA--G----MDITPE--REKQVLFTTPY 104 (243)
T ss_pred ceeeCCCCCE-EeeeHHHHHHHHHHhCCcEEEEeCCHHHHhHHHhCCCcCEEEE--c----CccCHH--HhcccceecCc
Confidence 4334545554 6777899999999999998886421 11222334444443210 0 122333 12456555554
Q ss_pred ccccceecccccccccccccccCceeeEEee
Q psy8591 200 MLIPSYVVSHSKEDVSRDRISSGYTLGVVRT 230 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (570)
+... +++-+.+...+.-.=-.|+++|+++-
T Consensus 105 ~~~~-~~~v~~~~~~~~~~dL~g~~Igv~~g 134 (243)
T PRK15007 105 YDNS-ALFVGQQGKYTSVDQLKGKKVGVQNG 134 (243)
T ss_pred cccc-eEEEEeCCCCCCHHHhCCCeEEEecC
Confidence 4333 22222222222111126899999864
No 109
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.82 E-value=1.3e+02 Score=28.80 Aligned_cols=156 Identities=10% Similarity=-0.042 Sum_probs=74.7
Q ss_pred HHHhhhHHhhhccccEEEccCCCCCCC----cccccccc--ccccCCCCCCeEEEEEe----ehhhhhcCCCCCCCCCCC
Q psy8591 9 LKISRNFYDTLLHIAYATQPNREYSVS----GMEKFFNI--KCRTSGKIPDAVVLVTT----VRALKMHGGGPSVVSGQP 78 (570)
Q Consensus 9 ~~~~~~~~~~~l~~DYVVTEAGFGADL----GaEKF~DI--KCR~sGL~PdavVLVAT----VRALK~HGG~~~v~~G~P 78 (570)
..-...+++.+...++=.-|.|||+.. -++..+++ .++..+..-..++++.. ++.++-+| ...+.---+
T Consensus 18 ~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i~~~ 96 (265)
T cd03174 18 TEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRIFDS 96 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEEEEe
Confidence 344456677777777778899999987 33555655 44444432233344433 33344443 221111111
Q ss_pred CCCccccCCh-HHHHhhhhchHHHHHhhhhhcCCCcceeee-cCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC
Q psy8591 79 LKPEYTEVST-STEHQGCIKGRGQFSPILLICGLQKHRTSK-NKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS 156 (570)
Q Consensus 79 L~~el~eENl-daLekG~aNL~kHIeNi~kvfGVnvfvVAi-NkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~ 156 (570)
..+...+.|+ -..+.-+.++...|+.+++ .|+.+ .+.+ .-|..-.+.+++ ..+-+.+.++|+.
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v-~~~~~~~~~~~~~~~~l------~~~~~~~~~~g~~------- 161 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKE-AGLEV-EGSLEDAFGCKTDPEYV------LEVAKALEEAGAD------- 161 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeE-EEEEEeecCCCCCHHHH------HHHHHHHHHcCCC-------
Confidence 1111111110 0011234566677777777 88877 3333 334100234444 4555566778864
Q ss_pred CceEeeeccCchhhhcccCcchhccc
Q psy8591 157 GVVVSAVDFGSGELSNILPGFLVESR 182 (570)
Q Consensus 157 g~V~s~~~~Gg~eLa~~l~~f~~~~r 182 (570)
.|.+.+.-|...-+++-.++..+|
T Consensus 162 --~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 162 --EISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred --EEEechhcCCcCHHHHHHHHHHHH
Confidence 222334445555555544444333
No 110
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=28.53 E-value=3.7e+02 Score=25.38 Aligned_cols=47 Identities=9% Similarity=-0.066 Sum_probs=31.1
Q ss_pred hhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 94 GCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 94 G~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
|+.++.+.|+.+++..++....+.+|++.. + ..- +.+++++++.|..
T Consensus 158 ~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~-~--~~~------~~~~~~~~~~~~~ 204 (212)
T cd02117 158 AANNICKGIRKYAKSGGVRLGGLICNSRNT-D--RET------ELIDAFAERLGTQ 204 (212)
T ss_pred HHHHHHHHHHHhCcccCCcEEEEEEeCCCC-c--cHH------HHHHHHHHHcCCC
Confidence 556677777776554466666789999932 1 222 5678888887765
No 111
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=28.42 E-value=1.4e+02 Score=33.63 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=61.4
Q ss_pred cCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccch---------hHHHHHHHHHhCCceeeeCC
Q psy8591 85 EVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKL---------SKHYRQLCLFVGLFFEVTNP 155 (570)
Q Consensus 85 eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~---------~~~lR~~C~~lGv~fav~~~ 155 (570)
=|.++.|.+.-.-|...+++... .+ +...|-|=. +|+.. .-|-| ...|.++|.+.|++..+.--
T Consensus 170 fEt~~dL~~a~~i~~~ll~~~~~-~~-~~qeVmlGy---SDSak--d~G~las~w~l~~A~~~L~~~~~~~gv~i~~fhG 242 (494)
T PRK13655 170 FEDADALLNADEILEEYLKAKKP-HG-KYLRVFLAR---SDPAM--NYGHIASVLSVKYALSRLYELEEELGVEIYPILG 242 (494)
T ss_pred cCCHHHHHhHHHHHHHHHhchhh-cC-CeeEEEEec---ccCcc--chhHHHHHHHHHHHHHHHHHHHHHcCCcEEEecc
Confidence 46777887777777777666433 11 333333332 23332 22433 35678899999999888874
Q ss_pred CCceEeeeccCch--hhhcccCcchhccccccccCCCCcccccccc
Q psy8591 156 SGVVVSAVDFGSG--ELSNILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 156 ~g~V~s~~~~Gg~--eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
-|- +.+|-||- .+..+|..+---+|.|++ |.|+|.||.
T Consensus 243 rGg--~~~RGGgpp~~~~ail~q~~g~~r~TeQ----ga~rY~~~~ 282 (494)
T PRK13655 243 VGS--LPFRGHLSPENLENVLEEYPGVYTFTVQ----SAFRYDYPY 282 (494)
T ss_pred CCC--CCCCCCCChHHHHHHHhCCCCCeEEEec----cccccCCCH
Confidence 443 33444442 334444444455899999 469999996
No 112
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=28.40 E-value=79 Score=33.50 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=30.3
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
-++|+..+.. +|++-+++++||++..+.+++. +.++.+.+++++..+|+
T Consensus 121 t~~~~~~~~~-~~~~~iivviNK~D~~~~~~~~-~~~i~~~~~~~~~~~~~ 169 (406)
T TIGR02034 121 TRRHSYIASL-LGIRHVVLAVNKMDLVDYDEEV-FENIKKDYLAFAEQLGF 169 (406)
T ss_pred cHHHHHHHHH-cCCCcEEEEEEecccccchHHH-HHHHHHHHHHHHHHcCC
Confidence 3456665555 7877558899999765444432 33344556666666675
No 113
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.15 E-value=87 Score=28.19 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=29.2
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
++++..+.+|.-...+.++++ ++++++|.++|+.+.+.+
T Consensus 29 ~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 29 GFELEALTVDEGIPGYRDESL------EVVERLAEELGIELEIVS 67 (185)
T ss_pred CeEEEEEEEECCCCCCcHHHH------HHHHHHHHHcCCceEEEe
Confidence 667766778853133445667 899999999999988886
No 114
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=28.06 E-value=51 Score=30.57 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=55.2
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIP 203 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~ 203 (570)
|.+.+. .|=..++++..++.+|+++.+...+ ...+.+...|..+++-. + +..+++ .+..|.|.-|.+-..
T Consensus 41 ~~~g~~-~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~l~~G~~D~~~~--~----~~~~~~--r~~~~~~s~p~~~~~ 111 (250)
T TIGR01096 41 DANGKL-VGFDVDLAKALCKRMKAKCKFVEQNFDGLIPSLKAKKVDAIMA--T----MSITPK--RQKQIDFSDPYYATG 111 (250)
T ss_pred CCCCCE-EeehHHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCcCEEEe--c----CccCHH--HhhccccccchhcCC
Confidence 555555 6778899999999999998886421 12223333444443311 1 122233 235677766666666
Q ss_pred ceecccccccc--cccccccCceeeEEeec
Q psy8591 204 SYVVSHSKEDV--SRDRISSGYTLGVVRTS 231 (570)
Q Consensus 204 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 231 (570)
..++.....+. +-+.+ .|.++|+++-+
T Consensus 112 ~~~~~~~~~~~~~~~~dl-~g~~i~~~~g~ 140 (250)
T TIGR01096 112 QGFVVKKGSDLAKTLEDL-DGKTVGVQSGT 140 (250)
T ss_pred eEEEEECCCCcCCChHHc-CCCEEEEecCc
Confidence 66666554322 11222 38889987643
No 115
>KOG1144|consensus
Probab=27.93 E-value=62 Score=38.77 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=24.2
Q ss_pred CccccccccccccCCCCCCeEEEEEeehhhhhcC
Q psy8591 35 SGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHG 68 (570)
Q Consensus 35 LGaEKF~DIKCR~sGL~PdavVLVATVRALK~HG 68 (570)
-|-|.|-|+..|-++|. |.++||.-| |||
T Consensus 548 pghEsFtnlRsrgsslC-~~aIlvvdI----mhG 576 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLC-DLAILVVDI----MHG 576 (1064)
T ss_pred CCchhhhhhhhcccccc-ceEEEEeeh----hcc
Confidence 46899999999999997 777787766 687
No 116
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=27.80 E-value=16 Score=37.92 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=53.4
Q ss_pred CCCccccccccc-cccCCC--CCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhh--
Q psy8591 33 SVSGMEKFFNIK-CRTSGK--IPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILL-- 107 (570)
Q Consensus 33 ADLGaEKF~DIK-CR~sGL--~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~k-- 107 (570)
+|-|+|||+-++ |-.-|- -++.+.|=..=|+|.|--|+. +.+.-.| ..+..|..|++.|.+
T Consensus 30 ~~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvF---------ETirv~~-----G~~~~le~Hl~RL~~Sa 95 (336)
T PLN02845 30 SDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVF---------DTATIRD-----GHLYELDAHLDRFLRSA 95 (336)
T ss_pred ccccccceeeeeeEEECCEEccHHHCcccccccceeecceEE---------EEEEEEC-----CEEcCHHHHHHHHHHHH
Confidence 688999998884 444553 344566666668887666664 2222221 236689999999887
Q ss_pred -hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 108 -ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 108 -vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.+|++. .. +..+|.+.++++|+..|.
T Consensus 96 ~~L~i~~---------p~------~~~~l~~~i~~~i~~~~~ 122 (336)
T PLN02845 96 AKAKIPL---------PF------DRATLRRILLQTVAASGC 122 (336)
T ss_pred HhhCCCC---------CC------CHHHHHHHHHHHHHhcCC
Confidence 344433 11 122356788888887664
No 117
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=27.67 E-value=1.2e+02 Score=34.22 Aligned_cols=26 Identities=8% Similarity=-0.021 Sum_probs=17.0
Q ss_pred hHHHHhhhHHhhhccccEEEccCCCCC
Q psy8591 7 LFLKISRNFYDTLLHIAYATQPNREYS 33 (570)
Q Consensus 7 ~~~~~~~~~~~~~l~~DYVVTEAGFGA 33 (570)
|.-.+..-|-+|+...|+||-| |||+
T Consensus 111 l~~~v~~s~~~l~~~~d~Vv~E-GAGS 136 (486)
T COG1492 111 LWVAVKESLERLDREYDVVVIE-GAGS 136 (486)
T ss_pred HHHHHHHHHHHhhhcccEEEEe-cCCC
Confidence 3334444444588999999998 4454
No 118
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=27.55 E-value=1.2e+02 Score=29.38 Aligned_cols=77 Identities=13% Similarity=-0.026 Sum_probs=39.1
Q ss_pred EEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhh-------------chHHHHHhhhhhcCCCcceeeecCC
Q psy8591 55 VVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCI-------------KGRGQFSPILLICGLQKHRTSKNKT 121 (570)
Q Consensus 55 vVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~a-------------NL~kHIeNi~kvfGVnvfvVAiNkF 121 (570)
.-|+.|+|. +..||... .-.++-++.++.++. ++.+.+.++++ -|..+ ..+.-.|
T Consensus 56 ~piI~T~R~-~~eGG~~~---------~~~~~~~~ll~~~~~~~~d~vDiEl~~~~~~~~~~~~~~-~~~ki-I~S~H~f 123 (225)
T cd00502 56 LPIIFTVRT-KSEGGNFE---------GSEEEYLELLEEALKLGPDYVDIELDSALLEELINSRKK-GNTKI-IGSYHDF 123 (225)
T ss_pred CCEEEEEcc-cccCCCcC---------CCHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHHHh-CCCEE-EEEeccC
Confidence 457779994 56677641 111223445555543 26666666554 44444 3232236
Q ss_pred CCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 122 SMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 122 ~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+.+...+++ ...|+ .|..+|..
T Consensus 124 ~~tp~~~~l-----~~~~~-~~~~~gad 145 (225)
T cd00502 124 SGTPSDEEL-----VSRLE-KMAALGAD 145 (225)
T ss_pred CCCcCHHHH-----HHHHH-HHHHhCCC
Confidence 554444555 34444 46666644
No 119
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=27.46 E-value=85 Score=28.91 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=38.1
Q ss_pred cccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc-eeeeCCCCceEe
Q psy8591 83 YTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF-FEVTNPSGVVVS 161 (570)
Q Consensus 83 l~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~~~g~V~s 161 (570)
+...+.+.+.+|+.||.+.+....+.+.-+-+.+.+|.+.++ ..++ ..+--++...|.. +.+-|.++.++.
T Consensus 61 l~~~~~~~F~~Gl~~Lv~~~~~~v~~~~~~~~~v~~n~TGGf--K~~~------~~~~~~g~~~~~~v~Yi~E~~~~li~ 132 (136)
T PF09651_consen 61 LQTEDPEKFREGLRNLVRWVAEEVKNYKGRGYEVIFNATGGF--KAEI------AYLTLLGMLYGDPVYYIFEEFSELIE 132 (136)
T ss_dssp E----HHHHHHHHHHHHHHTHHHHHHHHHTT-EEEEE-SSS---HHHH------HHHHHHHHHT--EEEEEETTTTEEEE
T ss_pred ecccchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCCh--HHHH------HHHHHHHHHcCCCEEEEEcCCCceEE
Confidence 345566778999999999998875523333345699987553 3344 4443344445555 555665555443
No 120
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=27.21 E-value=58 Score=34.20 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=39.9
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeee
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAV 163 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~ 163 (570)
.|.+.|+.+.+ ||-.- .-.++|+.-++.+. +-.++++++|+++|+... .|..||+|+..
T Consensus 4 ~~~~~~~~~~~-~~~~~-~~g~~R~~~s~~~~-----~a~~~~~~~~~~~Gl~v~-~D~~gN~~~~~ 62 (406)
T TIGR03176 4 HFRQAIEELSS-FGADP-AGGMTRLLYSPEWL-----AAQQQFKKRMAESGLETR-FDDVGNLYGRL 62 (406)
T ss_pred HHHHHHHHHhc-cCCCC-CCceEeeeCCHHHH-----HHHHHHHHHHHHcCCEEE-EcCCCcEEEEe
Confidence 46667777777 65322 12678864544444 336899999999999844 45679999854
No 121
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=26.77 E-value=64 Score=32.41 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=53.5
Q ss_pred CCCCCCCCcccccchhHHHHHHHH----Hh---CCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCL----FV---GLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGH 192 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~----~l---Gv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~ 192 (570)
|+..|.+.++ .|---++++++|+ .+ |+.+.+..-+ .+.......|-.+++-.. +-.++| .+.+
T Consensus 53 ~~f~~~~g~~-~G~didl~~~ia~~l~~~lg~~~~~~~~v~~~~~~~i~~L~~G~~Di~~~~------~~~t~e--R~~~ 123 (302)
T PRK10797 53 FSYYDNQQKV-VGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGS------TTNNLE--RQKQ 123 (302)
T ss_pred cceECCCCCE-eeecHHHHHHHHHHHHHhhCCCCceEEEEEcChHhHHHHHHCCCccEEecC------CccCcc--hhhc
Confidence 4334444555 3555576666665 45 4777777411 112233444444442211 233445 4577
Q ss_pred cccccccccccceecccccccccccccccCceeeEEeecc
Q psy8591 193 FEYGFPSMLIPSYVVSHSKEDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 193 Fe~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
|.|.-|-+....+++.+....+..-.=-.|+++|+.+-+.
T Consensus 124 ~~fS~Py~~~~~~lv~r~~~~i~sl~dL~Gk~V~v~~gs~ 163 (302)
T PRK10797 124 AAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTT 163 (302)
T ss_pred ceecccEeeccEEEEEECCCCCCChHHcCCCEEEEeCCCc
Confidence 8777666655656555544332211112589999987654
No 122
>KOG1615|consensus
Probab=26.65 E-value=63 Score=33.19 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=42.9
Q ss_pred HhhhhchHHHHHhhhhhcCCCcceeeecC--------CCCCCCCCcccc-cchhHHHHHHHHHhCCceeeeCCCCceEee
Q psy8591 92 HQGCIKGRGQFSPILLICGLQKHRTSKNK--------TSMFDVSQPITV-GKLSKHYRQLCLFVGLFFEVTNPSGVVVSA 162 (570)
Q Consensus 92 ekG~aNL~kHIeNi~kvfGVnvfvVAiNk--------F~~~Dtd~EI~~-~~~~~~lR~~C~~lGv~fav~~~~g~V~s~ 162 (570)
.-||.-|..||.+ .+|++.-.+.-|+ |.+||+.+++.- |-=++.|+++|+ |+.+..+. .
T Consensus 111 SGGF~~~i~~Va~---~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk--~~~~~~~~-------m 178 (227)
T KOG1615|consen 111 SGGFRQLIEPVAE---QLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRK--NYNYKTIV-------M 178 (227)
T ss_pred cCChHHHHHHHHH---HhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHh--CCChheeE-------E
Confidence 3455555444444 4677775556664 345565555532 223578899998 77766653 7
Q ss_pred eccCchhhhcc
Q psy8591 163 VDFGSGELSNI 173 (570)
Q Consensus 163 ~~~Gg~eLa~~ 173 (570)
+++|+-+|-.-
T Consensus 179 vGDGatDlea~ 189 (227)
T KOG1615|consen 179 VGDGATDLEAM 189 (227)
T ss_pred ecCCccccccC
Confidence 89999888543
No 123
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=26.59 E-value=41 Score=36.03 Aligned_cols=78 Identities=13% Similarity=-0.040 Sum_probs=47.7
Q ss_pred ChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHH---HHHhCCceeeeCCCCceEeee
Q psy8591 87 STSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQL---CLFVGLFFEVTNPSGVVVSAV 163 (570)
Q Consensus 87 NldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~---C~~lGv~fav~~~~g~V~s~~ 163 (570)
+++++++|+.-+ -. .++|||++. ...+.+...|..+|+.. -.+.|-+..+.. ..|.-
T Consensus 179 ~~Q~iK~GimEi-------aD-------i~vINKaD~--~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~----t~A~~ 238 (323)
T COG1703 179 DLQGIKAGIMEI-------AD-------IIVINKADR--KGAEKAARELRSALDLLREVWRENGWRPPVVT----TSALE 238 (323)
T ss_pred HHHHHHhhhhhh-------hh-------eeeEeccCh--hhHHHHHHHHHHHHHhhcccccccCCCCceeE----eeecc
Confidence 578999998433 23 568999953 44455555555444443 344556666665 45566
Q ss_pred ccCchhhhcccCcchhccccc
Q psy8591 164 DFGSGELSNILPGFLVESRQT 184 (570)
Q Consensus 164 ~~Gg~eLa~~l~~f~~~~r~~ 184 (570)
+.|=.+|-+.+..+...+..+
T Consensus 239 g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 239 GEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 677778888876665544433
No 124
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=26.51 E-value=63 Score=34.07 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=35.4
Q ss_pred CCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCC----cceeeecCCCCC
Q psy8591 49 GKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQ----KHRTSKNKTSMF 124 (570)
Q Consensus 49 GL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVn----vfvVAiNkF~~~ 124 (570)
|-+||++||+- -..-++..|.+ .-.+ ..|.+.|+-+...-+.. +-.+++|...+
T Consensus 212 Gs~Pd~lVL~H-~p~r~~~~~~p-------------~~~i-------p~l~~~I~l~e~la~~~~~~~VvgIslNt~~l- 269 (301)
T PF07755_consen 212 GSQPDALVLCH-APGRKHRDGFP-------------HYPI-------PPLEEEIELIEALAGTKPPAKVVGISLNTSGL- 269 (301)
T ss_dssp HH--SEEEEEE-ETT-SC-TTST-------------TSC----------HHHHHHHHHHCCCGC---EEEEEECC-TTS-
T ss_pred cCCCCeEEEEe-cCCcccccCCC-------------cCCC-------CCHHHHHHHHHHhhccCCCccEEEEEEECCCC-
Confidence 45899998865 33334444433 1111 23445555555533333 55678998845
Q ss_pred CCCCcccccchhHHHHHHHHHhCCce
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
+++|+ ...++++-+++|+.+
T Consensus 270 -~~~e~-----~~~~~~~~~e~glPv 289 (301)
T PF07755_consen 270 -SEEEA-----KAAIERIEEELGLPV 289 (301)
T ss_dssp --HHHH-----HHHHHHHHHHH-S-E
T ss_pred -CHHHH-----HHHHHHHHHHHCCCe
Confidence 23333 467777778888764
No 125
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=26.36 E-value=2.8e+02 Score=29.75 Aligned_cols=29 Identities=17% Similarity=-0.094 Sum_probs=19.2
Q ss_pred hhhchHHHHHhhhhhcCCCcceeeecCCCCCC
Q psy8591 94 GCIKGRGQFSPILLICGLQKHRTSKNKTSMFD 125 (570)
Q Consensus 94 G~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~D 125 (570)
|+....|.++...+ ||+|+ +..++-- +++
T Consensus 139 g~rKa~Rlm~lA~~-f~lPI-ItlvDTp-GA~ 167 (322)
T CHL00198 139 GYRKALRLMKHANK-FGLPI-LTFIDTP-GAW 167 (322)
T ss_pred HHHHHHHHHHHHHH-cCCCE-EEEEeCC-CcC
Confidence 45556676777667 99999 7666643 443
No 126
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.94 E-value=1.2e+02 Score=31.84 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=21.7
Q ss_pred hhhHHhhhccccEEEccCCCCCCCccccc
Q psy8591 12 SRNFYDTLLHIAYATQPNREYSVSGMEKF 40 (570)
Q Consensus 12 ~~~~~~~~l~~DYVVTEAGFGADLGaEKF 40 (570)
-+.+++.+-.+++=+=|+|||..||+--|
T Consensus 27 ~~~i~~~L~~aGv~~IEvg~~~g~g~~s~ 55 (337)
T PRK08195 27 VRAIARALDAAGVPVIEVTHGDGLGGSSF 55 (337)
T ss_pred HHHHHHHHHHcCCCEEEeecCCCCCCccc
Confidence 35566677777887889999998886555
No 127
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=25.88 E-value=82 Score=28.94 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=29.7
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+|.++..+.+|..-..+.++++ +.++++|+.+|+.+.+.+
T Consensus 26 ~~~~v~~v~vd~g~~~~~~~~~------~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 26 LKIRLIAAHVDHGLRPESDEEA------EFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred cCCCEEEEEeCCCCChhHHHHH------HHHHHHHHHcCCCEEEEE
Confidence 5666767777763243445567 899999999999988876
No 128
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.80 E-value=94 Score=27.70 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=41.9
Q ss_pred CChHHHHhhhhchHHHHHhhhhhcCCCcceeeec---CCCCCCCCCcccccchhHHHHHHH---HHhCCceeeeCCCC
Q psy8591 86 VSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKN---KTSMFDVSQPITVGKLSKHYRQLC---LFVGLFFEVTNPSG 157 (570)
Q Consensus 86 ENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiN---kF~~~Dtd~EI~~~~~~~~lR~~C---~~lGv~fav~~~~g 157 (570)
++-+ -++.++.|.+.|+-... +|....++-.+ .+...+.++ ....+.+.++++| ++.|+.+.+=+-.+
T Consensus 62 ~~~~-r~~~~~~~~~~i~~a~~-lg~~~i~~~~g~~~~~~~~~~~~--~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 62 ANDE-REEALEYLKKAIDLAKR-LGAKYIVVHSGRYPSGPEDDTEE--NWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp SSSH-HHHHHHHHHHHHHHHHH-HTBSEEEEECTTESSSTTSSHHH--HHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred cchh-hHHHHHHHHHHHHHHHH-hCCCceeecCcccccccCCCHHH--HHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 3434 67788889999998888 99988666666 232222222 2344455555554 45599988887443
No 129
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=25.63 E-value=22 Score=33.37 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=19.9
Q ss_pred cCCCcceeeec-CCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 109 CGLQKHRTSKN-KTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 109 fGVnvfvVAiN-kF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+++-.-+|--| +| +.+-..-+ +.|+++|.++|+.+.+.+
T Consensus 105 l~~~~ivvG~DfrF-G~~~~G~~------~~L~~~~~~~g~~v~~v~ 144 (157)
T PF06574_consen 105 LNVKHIVVGEDFRF-GKNRSGDV------ELLKELGKEYGFEVEVVP 144 (157)
T ss_dssp CTEEEEEEETT-EE-SGGGEEEH------HHHHHCTTTT-SEEEEE-
T ss_pred CCccEEEEccCccC-CCCCCCCH------HHHHHhcccCceEEEEEC
Confidence 44444333333 35 54555555 667777777776665554
No 130
>PLN02714 thiamin pyrophosphokinase
Probab=25.59 E-value=47 Score=32.96 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=30.9
Q ss_pred HhhhHHhhhccccEEEccCCCCCCCccccccccc-------cc---cCCCCCCeEE
Q psy8591 11 ISRNFYDTLLHIAYATQPNREYSVSGMEKFFNIK-------CR---TSGKIPDAVV 56 (570)
Q Consensus 11 ~~~~~~~~~l~~DYVVTEAGFGADLGaEKF~DIK-------CR---~sGL~PdavV 56 (570)
|-+.|..+..+++|+| ++|=||.+.++.. -+ ..|+.||++|
T Consensus 9 i~~~~~~~~~~a~~~i-----~aDgGa~~l~~~~~~~~~~~~~~~~~~gi~Pd~ii 59 (229)
T PLN02714 9 LPRFTPLLWEHAKLRV-----CADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIK 59 (229)
T ss_pred cHHHHHHHHhcCcEEE-----EecCcHHHHHhhhhhccccccccccccCcCCCEEE
Confidence 4566888888889998 8999999987620 01 1799999875
No 131
>PHA00028 rep RNA replicase, beta subunit
Probab=25.20 E-value=44 Score=38.03 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHhhhHHhhhccccE-EEccCCC--CCCCcccc-----ccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCC
Q psy8591 10 KISRNFYDTLLHIAY-ATQPNRE--YSVSGMEK-----FFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP 81 (570)
Q Consensus 10 ~~~~~~~~~~l~~DY-VVTEAGF--GADLGaEK-----F~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~ 81 (570)
++.|+.-+|+...-| +.++++| ||..|.-+ |+-+-|... +|.|||+|.
T Consensus 107 ~Ar~~I~klL~~f~~~~~~~c~FS~GAS~~~~r~~~~p~~K~A~~a~----------vT~rAl~y~-------------- 162 (561)
T PHA00028 107 TARRLIGKLLGDFVYDVFTECRFSGGASTTSSRLHGAPFKKFAGQAE----------VTARALPYL-------------- 162 (561)
T ss_pred HHHHHHHHHhcccchhhhhheeecCCccccccccccchhhhhccccc----------cchhhHHHH--------------
Confidence 444555555544422 5666777 56655433 455555433 577888765
Q ss_pred ccccCChHHHHhhhh-chHHHHHhhhh
Q psy8591 82 EYTEVSTSTEHQGCI-KGRGQFSPILL 107 (570)
Q Consensus 82 el~eENldaLekG~a-NL~kHIeNi~k 107 (570)
.++++||. -++.||+-+..
T Consensus 163 -------~a~~~~~~~~~R~~~~~~~~ 182 (561)
T PHA00028 163 -------VAYRRGCAAWARKHIELMEM 182 (561)
T ss_pred -------HHHHhhccHHHhhhhhhccc
Confidence 46778886 45556666533
No 132
>PF09598 Stm1_N: Stm1; InterPro: IPR019084 This domain is found at the N-terminal region of the Stm1 protein. Stm1 is a G4 quadraplex and purine motif triplex nucleic acid-binding protein. It has been implicated in many biological processes including apoptosis and telomere biosynthesis. Stm1 is known to interact with CDC13 [], and is known to associate with ribosomes and nuclear telomere cap complexes []. ; PDB: 3U5G_h 3U5C_h.
Probab=24.63 E-value=32 Score=29.23 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=0.6
Q ss_pred CCCCCCCCCc-ccccccC
Q psy8591 258 DDDDDDDEQS-TIPTKVS 274 (570)
Q Consensus 258 ~~~~~~~~~s-~~ptk~~ 274 (570)
||++||.++- ..|+|+.
T Consensus 8 nD~e~Dp~~~~~~p~k~v 25 (68)
T PF09598_consen 8 NDDEDDPSQLPAPPTKAV 25 (68)
T ss_dssp -------------S----
T ss_pred CCcccCcccccCccchhc
Confidence 3433343343 4566655
No 133
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.52 E-value=1.9e+02 Score=26.84 Aligned_cols=110 Identities=10% Similarity=-0.057 Sum_probs=51.7
Q ss_pred cccEEEccCCCCCC---------CccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHH
Q psy8591 21 HIAYATQPNREYSV---------SGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTE 91 (570)
Q Consensus 21 ~~DYVVTEAGFGAD---------LGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaL 91 (570)
...+-|-..|+|-| .+.++|.... .....||.|+|..=+--+.++.+.. . ...-.++..
T Consensus 37 ~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v--~~~~~p~~vii~~G~ND~~~~~~~~---------~-~~~~~~~~~ 104 (204)
T cd01830 37 TRGIAVLNAGIGGNRLLADGLGPSALARFDRDV--LSQPGVRTVIILEGVNDIGASGTDF---------A-AAPVTAEEL 104 (204)
T ss_pred CCCcEEEECCccCcccccCCCChHHHHHHHHHH--hcCCCCCEEEEeccccccccccccc---------c-cCCCCHHHH
Confidence 34677888898887 3456664211 1123588888765333322111110 0 011234445
Q ss_pred HhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 92 HQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 92 ekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
++ ||++-|+.+++ .|+.+....++-|...+... -...++...|.++|++..
T Consensus 105 ~~---~l~~ii~~~~~-~~~~vil~t~~P~~~~~~~~-~~~~~~~~~~n~~~~~~~ 155 (204)
T cd01830 105 IA---GYRQLIRRAHA-RGIKVIGATITPFEGSGYYT-PAREATRQAVNEWIRTSG 155 (204)
T ss_pred HH---HHHHHHHHHHH-CCCeEEEecCCCCCCCCCCC-HHHHHHHHHHHHHHHccC
Confidence 44 45555555555 46665333333331111101 112334567788887644
No 134
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.41 E-value=1.5e+02 Score=30.08 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=39.9
Q ss_pred hHHHHHhhhhhc-CCCcceeeecC-CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC
Q psy8591 98 GRGQFSPILLIC-GLQKHRTSKNK-TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS 156 (570)
Q Consensus 98 L~kHIeNi~kvf-GVnvfvVAiNk-F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~ 156 (570)
+.+.|+.++..| |.++..=.=|+ | +. -+.++ |...+-..|.++|+.++|.|+.
T Consensus 176 ~l~~i~~l~~~~pg~p~l~G~Sn~Sf-gl-p~r~~----in~~fl~~a~~~Gl~~aI~np~ 230 (261)
T PRK07535 176 VLETIRRIKELYPKVHTTCGLSNISF-GL-PNRKL----INRAFLVMAMGAGMDSAILDPL 230 (261)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCcc-CC-cchHH----HHHHHHHHHHHcCCCEEeeCCC
Confidence 345577777756 99996656676 6 65 44444 7788889999999999999976
No 135
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=24.20 E-value=1.2e+02 Score=27.59 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=22.2
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+++++ .+++||++..+. +++ .+..+.++++|...|..
T Consensus 128 ~~~pv-iiv~nK~D~~~~-~~~--~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 128 RGIPV-LIVLTKADKLKK-SEL--NKQLKKIKKALKKDADD 164 (179)
T ss_pred cCCCE-EEEEECcccCCH-HHH--HHHHHHHHHHHhhccCC
Confidence 68887 789999954321 111 22336667777766543
No 136
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=24.15 E-value=2.5e+02 Score=30.46 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=52.2
Q ss_pred CCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecC-CCCCCCC
Q psy8591 49 GKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNK-TSMFDVS 127 (570)
Q Consensus 49 GL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNk-F~~~Dtd 127 (570)
+..||-+.|-.|||++. .+..+.+++ .+++=++++...||..+ .+..++ +-..-+|
T Consensus 246 NVIpd~A~l~gtvR~~~-------------------~~~~~~~~~---~i~~ia~g~a~~~g~~~-ei~~~~~~p~~~Nd 302 (392)
T COG1473 246 NVIPDSAELEGTIRTFS-------------------DEVREKLEA---RIERIAKGIAAAYGAEA-EIDYERGYPPVVND 302 (392)
T ss_pred CcCCCeeEEEEEeecCC-------------------HHHHHHHHH---HHHHHHHHHHHHhCCeE-EEEecCCCCCccCC
Confidence 67899999999999873 233344443 34444455555677777 334443 3112222
Q ss_pred CcccccchhHHHHHHHHHhCCceee-eCCCCceEeeeccCchhhhccc
Q psy8591 128 QPITVGKLSKHYRQLCLFVGLFFEV-TNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 128 ~EI~~~~~~~~lR~~C~~lGv~fav-~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
. ++.+++++.|++++-.-.+ .+. ...+.||++.+..+
T Consensus 303 ~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~gsEDf~~~~ 340 (392)
T COG1473 303 P-----ALTDLLAEAAEEVGGEEVVVVEL-----PPSMAGSEDFGYYL 340 (392)
T ss_pred H-----HHHHHHHHHHHHhccccceeccc-----CCCCCccchHHHHH
Confidence 2 4578999999986632111 110 01245888877654
No 137
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=24.06 E-value=97 Score=32.35 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=43.6
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeee
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAV 163 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~ 163 (570)
+|..+|+.|.+ ||-.- .-.+.|+.-++.+. +..++|+++++++|+.+.+- .-||||+..
T Consensus 11 ~~~~~~~~~~~-~~~~~-~~g~~r~~~~~~e~-----~~~~~l~~~l~~~G~~v~~~-~~gNl~a~~ 69 (414)
T PRK12891 11 RLWASLERMAQ-IGATP-KGGVCRLALTDGDR-----EARDLFVAWARDAGCTVRVD-AMGNLFARR 69 (414)
T ss_pred HHHHHHHHHHh-ccCCC-CCceeeccCCHHHH-----HHHHHHHHHHHHCCCEEEEC-CCCCEEEEe
Confidence 58888888888 76433 22788875544444 34789999999999988774 568999876
No 138
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.98 E-value=1.2e+02 Score=29.54 Aligned_cols=69 Identities=6% Similarity=-0.008 Sum_probs=43.9
Q ss_pred cccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHH---HhCCceeeeC
Q psy8591 83 YTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCL---FVGLFFEVTN 154 (570)
Q Consensus 83 l~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~---~lGv~fav~~ 154 (570)
+..++-+.-++.+.++++.|+-..+ +|.+..++-....... +.+=....+.+.++++|. +.|+.+.+-|
T Consensus 72 ~~~~~~~~r~~~~~~~~~~i~~A~~-lG~~~v~~~~g~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 72 LASPDKEKREKSIERLKDEIERCEE-LGIRLLVFHPGSYLGQ--SKEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEECCCCCCCC--CHHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 3345556788899999999999888 9999733322222111 111123445566776665 5788888876
No 139
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=23.97 E-value=1.7e+02 Score=25.90 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHhCCc
Q psy8591 133 GKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 133 ~~~~~~lR~~C~~lGv~ 149 (570)
..+.+.++++|++.|+.
T Consensus 142 ~~~~~~~~~~a~~~~~~ 158 (199)
T cd01838 142 KQYAEACVEVAEELGVP 158 (199)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 45667889999998854
No 140
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=23.60 E-value=1.7e+02 Score=32.94 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=59.0
Q ss_pred HHhhhHHhhhccccEEEccC------CCCCCC--ccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCC
Q psy8591 10 KISRNFYDTLLHIAYATQPN------REYSVS--GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKP 81 (570)
Q Consensus 10 ~~~~~~~~~~l~~DYVVTEA------GFGADL--GaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~ 81 (570)
-|.+.|++-+..+||.|-|. |+|.+. |--- + ..|..|+ -||||.-++++-
T Consensus 67 ~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA--~-lAk~l~~---PVvLVid~~~~s---------------- 124 (451)
T COG1797 67 GVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTA--D-LAKLLGA---PVVLVVDASGLS---------------- 124 (451)
T ss_pred HHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHH--H-HHHHhCC---CEEEEEeCcchh----------------
Confidence 46788999999999999996 333222 1100 0 1122222 288998888662
Q ss_pred ccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH-hCCc
Q psy8591 82 EYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF-VGLF 149 (570)
Q Consensus 82 el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~-lGv~ 149 (570)
-.+.|+-+||+++..- ++.-.|.+||- + ++... +++|+.+.+ .|++
T Consensus 125 ----~S~AAiv~G~~~fdp~---------v~iaGVIlNrV-g--serH~------~llr~Ale~~~gv~ 171 (451)
T COG1797 125 ----RSVAAIVKGFKHFDPD---------VNIAGVILNRV-G--SERHY------ELLRDALEEYTGVP 171 (451)
T ss_pred ----HHHHHHHHHHHhcCCC---------CceEEEEEecC-C--CHHHH------HHHHHHhhhcCCCc
Confidence 2468999999887653 33446788887 4 24444 556666665 4443
No 141
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=23.39 E-value=1.2e+02 Score=31.95 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=30.4
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
..|+..+.. +|++.+.+++||.+..+.+++- ...+.+.++++++.+|+
T Consensus 130 ~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~~~-~~~~~~ei~~~~~~~g~ 177 (426)
T TIGR00483 130 REHAFLART-LGINQLIVAINKMDSVNYDEEE-FEAIKKEVSNLIKKVGY 177 (426)
T ss_pred HHHHHHHHH-cCCCeEEEEEEChhccCccHHH-HHHHHHHHHHHHHHcCC
Confidence 446655444 6766558899999665433321 23345677888888886
No 142
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=22.94 E-value=2.7e+02 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=11.8
Q ss_pred Eeecchhhhhhhhhcc
Q psy8591 228 VRTSGTRMLNALVTDA 243 (570)
Q Consensus 228 ~~~~~~~~~~~~~~~~ 243 (570)
...+||-|--++|+-.
T Consensus 182 ~~~~GTS~Aap~vaG~ 197 (222)
T cd07492 182 LTVSGNSFAAPHVTGM 197 (222)
T ss_pred EEeccHHHHHHHHHHH
Confidence 4568999988777643
No 143
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.80 E-value=54 Score=25.20 Aligned_cols=54 Identities=24% Similarity=0.108 Sum_probs=36.9
Q ss_pred hhHHHHhhhHHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhh
Q psy8591 6 NLFLKISRNFYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRAL 64 (570)
Q Consensus 6 ~~~~~~~~~~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRAL 64 (570)
||-..+++.=|+.++-.||++.+.+.+.+..... |+......|.+++|......
T Consensus 18 ~l~~~l~~~g~~v~~~~d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 18 NLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred HHHHHHHHCCCeEEEECCEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCchh
Confidence 3334444444666666699999999887765433 67777788999998855543
No 144
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=22.59 E-value=89 Score=30.30 Aligned_cols=98 Identities=8% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCCcccccchhHHHHHHHHHhCCc-eeeeC-CCCceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLF-FEVTN-PSGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~-~~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
|.+.+. .|-..+++++.|+.+|+. ..+.. +....+.....|..++.- .-+-.+++ .+..|.|-=|-+..
T Consensus 49 ~~~g~~-~G~~~dl~~~i~~~lg~~~~~~~~~~w~~~~~~l~~G~~Di~~------~~~~~t~e--R~~~~~fs~py~~~ 119 (275)
T TIGR02995 49 GADGKV-SGAAPDVARAIFKRLGIADVNASITEYGALIPGLQAGRFDAIA------AGLFIKPE--RCKQVAFTQPILCD 119 (275)
T ss_pred CCCCce-ecchHHHHHHHHHHhCCCceeeccCCHHHHHHHHHCCCcCEEe------ecccCCHH--HHhccccccceeec
Confidence 555665 588889999999999986 33331 111122223344333311 10112334 23555554443333
Q ss_pred cceeccccccccc---ccccc--cCceeeEEeec
Q psy8591 203 PSYVVSHSKEDVS---RDRIS--SGYTLGVVRTS 231 (570)
Q Consensus 203 ~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~ 231 (570)
...++.+...+.. -+.+. .|+++|+++-+
T Consensus 120 ~~~~~~~~~~~~~i~~~~dl~~~~g~~Igv~~g~ 153 (275)
T TIGR02995 120 AEALLVKKGNPKGLKSYKDIAKNPDAKIAAPGGG 153 (275)
T ss_pred ceeEEEECCCCCCCCCHHHhccCCCceEEEeCCc
Confidence 3334433332221 12232 38899998754
No 145
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=22.58 E-value=1.1e+02 Score=28.81 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=31.0
Q ss_pred HHHhhhhhcCCCcceeeec-CCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 101 QFSPILLICGLQKHRTSKN-KTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiN-kF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
-|+++...+++...++--| +| +.+-..-+ +.|+++|++.|+.+.+.+
T Consensus 90 Fi~~il~~~~~~~ivvG~Df~F-G~~~~g~~------~~L~~~~~~~g~~v~~v~ 137 (180)
T cd02064 90 FVEDLLVKLNAKHVVVGFDFRF-GKGRSGDA------ELLKELGKKYGFEVTVVP 137 (180)
T ss_pred HHHHHHhhcCCeEEEEccCCCC-CCCCCCCH------HHHHHhhhhcCcEEEEeC
Confidence 3444432235555555666 46 66666666 788999999998888776
No 146
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=22.16 E-value=1.4e+02 Score=34.50 Aligned_cols=104 Identities=16% Similarity=0.033 Sum_probs=62.1
Q ss_pred hchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc-eeeeCCCCceEeeeccCchhhhccc
Q psy8591 96 IKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF-FEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 96 aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
+=..+|..++.+.||... .||.-.. -..|+ .|++++++.|..+... ...+ .|..-..++.+--..+
T Consensus 293 ~af~kHF~~L~~~YG~v~---vvNLl~t--K~~E~---~L~~~ye~~l~~~~~~~i~~~-----~fdfh~e~~~~~~~~~ 359 (570)
T COG5329 293 SAFDKHFDKLREKYGDVY---VVNLLKT--KGYEA---PLLELYEKHLDLSKKPKIHYT-----EFDFHKETSQDGFDDV 359 (570)
T ss_pred HHHHHHHHHHHHHcCCEE---EEEcccC--Ccchh---HHHHHHHHHHhhCCCCCceeE-----EEeehhcccccccccH
Confidence 356899999999999933 5776422 23455 7789999999853322 2222 4555555654444444
Q ss_pred CcchhccccccccCCCCccccccccccccceecccccccccccccccCceeeEEeecc
Q psy8591 175 PGFLVESRQTDESHDMGHFEYGFPSMLIPSYVVSHSKEDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 175 ~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
..++-.+++.=+ .+|-|.| |+.+.+.- +.--||+||.-
T Consensus 360 ~~Ll~~i~~~l~--~~gy~~~-----------------d~~~~~~~-s~Q~GV~RtNC 397 (570)
T COG5329 360 KKLLYLIEQDLL--EFGYFAY-----------------DINEGKSI-SEQDGVFRTNC 397 (570)
T ss_pred HHHHHHHHHHHH--hcCceec-----------------cccCCcee-eeecceEEecc
Confidence 445555555533 3455544 55555433 34569999975
No 147
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=22.15 E-value=95 Score=33.09 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=29.7
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
.|..+..+.+|.|...+..+++ +.++++|+++|+.+.+.+
T Consensus 28 ~G~~V~~v~~~~~~~~~~~~d~------~~a~~va~~LgIp~~vvd 67 (360)
T PRK14665 28 AGYEVTGVTFRFYEFNGSTEYL------EDARALAERLGIGHITYD 67 (360)
T ss_pred cCCeEEEEEEecCCCCCChHHH------HHHHHHHHHhCCCEEEEe
Confidence 4667767778877333334456 889999999999988876
No 148
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=22.00 E-value=1.6e+02 Score=29.44 Aligned_cols=43 Identities=9% Similarity=-0.108 Sum_probs=23.9
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+.++.+++ -|..+ .++.-.|..+...+++ ..+-+.|+++|..
T Consensus 125 ~~l~~~~~~-~~~kv-I~S~H~f~~tP~~~~l------~~~~~~~~~~gaD 167 (253)
T PRK02412 125 KEMVAFAHE-HGVKV-VLSYHDFEKTPPKEEI------VERLRKMESLGAD 167 (253)
T ss_pred HHHHHHHHH-cCCEE-EEeeCCCCCCcCHHHH------HHHHHHHHHhCCC
Confidence 333344444 45555 4444447666665666 4555568888854
No 149
>PHA00520 packaging NTPase P4
Probab=21.99 E-value=3e+02 Score=29.87 Aligned_cols=115 Identities=15% Similarity=0.033 Sum_probs=76.3
Q ss_pred cCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhh
Q psy8591 28 PNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILL 107 (570)
Q Consensus 28 EAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~k 107 (570)
+-||+.|+-+--|.++-.= -=-|+|+|=++|-+=+.-|+.. ++ ..+-+|+--|.--|.||..
T Consensus 163 ~~~Y~td~~~~~~~~l~am----l~v~VvvvDSlr~vl~~~~Gna-ts-------------GGISr~~~~~LTdl~~iaa 224 (330)
T PHA00520 163 LEGYDTDLHVFAALILAAM----LDVDVVVVDSLRNVLFELGGNA-TS-------------GGISRGAYGLLTDLGNIAA 224 (330)
T ss_pred ccccCchhHHHHHHHHHHH----hhceEEEEechHHHHhhhccCC-CC-------------CcchHHHHHHHHHHHHHHH
Confidence 3457777665555443111 1123577888998876655442 22 2588888899999999999
Q ss_pred hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhh
Q psy8591 108 ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 108 vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa 171 (570)
-+|.-+ +..+|-.+. |+ |+...+++..+..---+.+.+ ++||..-.--|++|-
T Consensus 225 s~gc~v-V~~lNP~S~---De-----KIe~v~~evskS~s~s~~va~--d~~~~~l~RtgeGli 277 (330)
T PHA00520 225 SRGCRV-VATLNPMSD---DE-----KIEAVVREVSKSNSGSMVVAR--DNVWRTLFRTGEGLI 277 (330)
T ss_pred HcCcEE-EEEcCCCCc---cH-----hHHHHHHHHHhhccceEEEec--CceeeeeeccCCcee
Confidence 899999 999998722 33 346778888877554455555 788887666666653
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=21.86 E-value=93 Score=28.16 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=36.0
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCc
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPG 176 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~ 176 (570)
+.+. .+.+||.+..+ .+. +.++++++++|+...+.. +-|+-+.|=.+|-+.+-.
T Consensus 91 ~~~i-i~v~nK~Dl~~--~~~------~~~~~~~~~~~~~~p~~~----~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 91 SKRQ-IAVISKTDMPD--ADV------AATRKLLLETGFEEPIFE----LNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred CCCe-EEEEEccccCc--ccH------HHHHHHHHHcCCCCCEEE----EECCCccCHHHHHHHHHH
Confidence 4565 78999995533 333 668899999997545554 445566777777776633
No 151
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.63 E-value=1.6e+02 Score=31.97 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=35.2
Q ss_pred CCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecC
Q psy8591 52 PDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNK 120 (570)
Q Consensus 52 PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNk 120 (570)
-.+++-++...+++|.||+-.+ .-|-.+...|+..|..++..+.+.+++|+ .+-+.|
T Consensus 38 sPvIlq~s~~~~~~~~g~~~~~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~VPV-~lHLDH 94 (340)
T cd00453 38 APVIVQFSNGGASFIAGKGVKS-----------DVPQGAAILGAISGAHHVHQMAEHYGVPV-ILHTDH 94 (340)
T ss_pred CCEEEEcCcchHHHhCCCcccc-----------cccchhhhhhHHHHHHHHHHHHHHCCCCE-EEEcCC
Confidence 3445555554688887743211 11234567778888888888877788888 444444
No 152
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=21.31 E-value=42 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCcccccchhHHHHHHHHHhCCce
Q psy8591 127 SQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 127 d~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
..+++.|++.+.|+++|+..|+..
T Consensus 20 ~~~~~~~~vy~~Y~~~c~~~~~~~ 43 (87)
T cd08768 20 EEEATTGEVYEVYEELCEEIGVDP 43 (87)
T ss_pred CCCccHHHHHHHHHHHHHHcCCCC
Confidence 567899999999999999987543
No 153
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=21.28 E-value=50 Score=28.80 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=34.0
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+|++..+.+.+.+|++. ..|||.| |++.+..-|+.|.+.-
T Consensus 11 ~lK~~A~~vl~~lGls~-S~Ai~~f-----------------l~qi~~~~~iPF~~~~ 50 (80)
T PRK11235 11 ELKARAYAVLEKLGVTP-SEALRLL-----------------LQYVAENGRLPFKTVL 50 (80)
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHH-----------------HHHHHHhCCCCCCCCC
Confidence 67778888888899999 8899988 7888999999999764
No 154
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=21.07 E-value=2.4e+02 Score=26.43 Aligned_cols=79 Identities=10% Similarity=-0.034 Sum_probs=37.0
Q ss_pred CCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCC
Q psy8591 49 GKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQ 128 (570)
Q Consensus 49 GL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~ 128 (570)
.++||.+||-. |...+..| .+.+.+.+ ||.+-|+.+++ -+.++.++.++-+-..+...
T Consensus 87 ~~~pd~VvI~~---------G~ND~~~~---------~~~~~~~~---~l~~ii~~l~~-~~P~~~Iil~~~~p~~~~~~ 144 (214)
T cd01820 87 GVNPKVVVLLI---------GTNNIGHT---------TTAEEIAE---GILAIVEEIRE-KLPNAKILLLGLLPRGQNPN 144 (214)
T ss_pred CCCCCEEEEEe---------cccccCCC---------CCHHHHHH---HHHHHHHHHHH-HCCCCeEEEEeccCCCCCch
Confidence 46799988855 54422111 14455554 44444555554 22223333444331111112
Q ss_pred cc--cccchhHHHHHHHHHh-CCc
Q psy8591 129 PI--TVGKLSKHYRQLCLFV-GLF 149 (570)
Q Consensus 129 EI--~~~~~~~~lR~~C~~l-Gv~ 149 (570)
++ .+.++.+.++++|.+. |+.
T Consensus 145 ~~~~~~~~~n~~l~~~~~~~~~v~ 168 (214)
T cd01820 145 PLRERNAQVNRLLAVRYDGLPNVT 168 (214)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCEE
Confidence 22 1345667777777653 543
No 155
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=21.05 E-value=1.5e+02 Score=28.67 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=32.4
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHH-HhCCceeeeCCCCceEeeeccCchhhhcccCcchh
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCL-FVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLV 179 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~-~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~ 179 (570)
-|+.+..+..|.| +..+.+.. +.++++|+ +.|+.|.+.. +++.-|.. +.-|=.||.
T Consensus 56 ~gl~Vlg~p~nqf-~~qe~~~~------~ei~~f~~~~~g~~Fpv~~-------k~dvnG~~-~~pl~~~Lk 112 (183)
T PRK10606 56 QGFVVLGFPCNQF-LGQEPGSD------EEIKTYCRTTWGVTFPMFS-------KIEVNGEG-RHPLYQKLI 112 (183)
T ss_pred CCeEEEEeecccc-ccCCCCCH------HHHHHHHHHccCCCceeEE-------EEccCCCC-CCHHHHHHH
Confidence 3555544445888 42222333 56688997 7999987664 66666665 223334554
No 156
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=21.03 E-value=2.8e+02 Score=24.52 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=28.4
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
+|.+.++++++. -++++ ++..||.+..+. ..+ -.+.++++|.+.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~ 142 (168)
T cd01866 94 HLTSWLEDARQHSNSNMTI-MLIGNKCDLESR-REV----SYEEGEAFAKEHGLI 142 (168)
T ss_pred HHHHHHHHHHHhCCCCCcE-EEEEECcccccc-cCC----CHHHHHHHHHHcCCE
Confidence 445555555441 46888 778899854322 223 125677888887765
No 157
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=20.92 E-value=1.5e+02 Score=32.50 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 100 GQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 100 kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
+|+..+.. +|++.+++++||++..+.+++. +.++.+.+++++..+|
T Consensus 150 ~~~~l~~~-lg~~~iIvvvNKiD~~~~~~~~-~~~i~~~l~~~~~~~~ 195 (474)
T PRK05124 150 RHSFIATL-LGIKHLVVAVNKMDLVDYSEEV-FERIREDYLTFAEQLP 195 (474)
T ss_pred HHHHHHHH-hCCCceEEEEEeeccccchhHH-HHHHHHHHHHHHHhcC
Confidence 35554444 6776558899999665433332 3445566666676666
No 158
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=20.92 E-value=51 Score=27.89 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=27.5
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS 156 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~ 156 (570)
+|++..+.+.+-+|++. ..|||.| |++.+..-|+.|.+..+.
T Consensus 11 ~lK~~a~~il~~~Glt~-s~ai~~f-----------------l~qiv~~~~iPF~~~~~~ 52 (83)
T PF04221_consen 11 ELKEEAEAILEELGLTL-SDAINMF-----------------LKQIVREGGIPFELSLPE 52 (83)
T ss_dssp HHHHHHHHHHHHTT--H-HHHHHHH-----------------HHHHHHHSS-S----SS-
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHH-----------------HHHHHHhCCCCccccCCC
Confidence 56666777777799999 8899988 788899999999998643
No 159
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.83 E-value=2.5e+02 Score=28.91 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=33.7
Q ss_pred chHHHHHhhhh--hcCCCcceeeecCCCCC-CCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 97 KGRGQFSPILL--ICGLQKHRTSKNKTSMF-DVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 97 NL~kHIeNi~k--vfGVnvfvVAiNkF~~~-Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+|+.+|..++. +.|++.....|-=|.+. ..++ +++.++| ++|++.++.-
T Consensus 236 ~L~~~i~~~l~~~l~G~~~~g~DIGGf~~~~~~~~--------EL~~RW~-q~g~f~P~~R 287 (317)
T cd06598 236 GLKSQPNAALQMSMSGIDYYHSDIGGFAGGDELDP--------ELYTRWF-QYGAFDPPFR 287 (317)
T ss_pred HHHHHHHHHHhhhccCCcccCCCcCCcCCCCCCCH--------HHHHHHH-HhccCCcccc
Confidence 56666666655 68899888888888443 1455 4477776 5688887764
No 160
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=20.82 E-value=68 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.4
Q ss_pred CCcccccchhHHHHHHHHHhCCc
Q psy8591 127 SQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 127 d~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
..+++.|++-+.|+++|.+.|+.
T Consensus 13 ~~~~~~~~vy~~Y~~lc~~~~~~ 35 (85)
T PF09079_consen 13 KEEVTTGEVYEVYEELCESLGVD 35 (85)
T ss_dssp SSSEEHHHHHHHHHHHHHHTTS-
T ss_pred CCceeHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999998884
No 161
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=20.79 E-value=4.5e+02 Score=25.84 Aligned_cols=29 Identities=7% Similarity=-0.212 Sum_probs=19.7
Q ss_pred hhhhchHHHHHhhhhhcCCCcceeeecCC
Q psy8591 93 QGCIKGRGQFSPILLICGLQKHRTSKNKT 121 (570)
Q Consensus 93 kG~aNL~kHIeNi~kvfGVnvfvVAiNkF 121 (570)
.|+..|.++|+.++..-++....+.+|+.
T Consensus 158 ~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 158 YAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred HHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 67778888888875434555445667865
No 162
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=20.64 E-value=49 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=33.3
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+|++..+.+.+-+|++. ..|||.| |++..+..|+.|.+.-
T Consensus 12 ~lK~~a~~i~~~lGl~~-s~ai~~f-----------------l~qvv~~~~lPF~~~~ 51 (83)
T TIGR02384 12 ELKKEAYAVFEELGLTP-STAIRMF-----------------LKQVIREQGLPFDLRL 51 (83)
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHH-----------------HHHHHHhCCCCCCcCC
Confidence 56677777777799999 8899988 7888899999999884
No 163
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=20.44 E-value=1.5e+02 Score=28.28 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=28.4
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCC-CCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDV-SQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dt-d~EI~~~~~~~~lR~~C~~lGv 148 (570)
+.+|+..+.. +|+..+.+++||.+..-. ..+-...++.+.+++++..+|+
T Consensus 125 ~~~~~~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~ 175 (219)
T cd01883 125 TREHALLART-LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGY 175 (219)
T ss_pred hHHHHHHHHH-cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCC
Confidence 4456655544 776555889999955310 0111123445666667777776
No 164
>PRK05927 hypothetical protein; Provisional
Probab=20.36 E-value=1.6e+02 Score=31.16 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred HHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhccccccccCCCCccc
Q psy8591 139 YRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFE 194 (570)
Q Consensus 139 lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe 194 (570)
.-+.++++|+.+.-. . +++- |+...+.+ +.+..+|..++ .+++|.
T Consensus 190 ~i~~A~~lGi~~~sg----~---l~G~-gEt~e~ri-~~l~~Lr~lqd--~~~gf~ 234 (350)
T PRK05927 190 FHKLAHRLGFRSTAT----M---MFGH-VESPEDIL-LHLQTLRDAQD--ENPGFY 234 (350)
T ss_pred HHHHHHHcCCCcCce----e---EEee-CCCHHHHH-HHHHHHHHhhH--hhCCee
Confidence 346788899887543 3 3444 55555555 55555888887 567776
No 165
>PRK08187 pyruvate kinase; Validated
Probab=20.35 E-value=59 Score=36.33 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=35.7
Q ss_pred hhhHHhhhcccc------EEEccCCCCCCCcccccccc------ccccCCCCCCeEEEEEe
Q psy8591 12 SRNFYDTLLHIA------YATQPNREYSVSGMEKFFNI------KCRTSGKIPDAVVLVTT 60 (570)
Q Consensus 12 ~~~~~~~~l~~D------YVVTEAGFGADLGaEKF~DI------KCR~sGL~PdavVLVAT 60 (570)
-+|+++.+...| ..|=-.=||.++|+|+-..+ +||..|+- ||+||
T Consensus 369 v~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkp----vI~AT 425 (493)
T PRK08187 369 VANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVP----VIWAT 425 (493)
T ss_pred HHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCC----eEEEc
Confidence 368899987665 67777889999999995553 89999876 77777
No 166
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=20.27 E-value=2e+02 Score=26.84 Aligned_cols=55 Identities=0% Similarity=-0.102 Sum_probs=37.8
Q ss_pred CChHHHHhhhhchHHHHHhhh-hhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH
Q psy8591 86 VSTSTEHQGCIKGRGQFSPIL-LICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF 145 (570)
Q Consensus 86 ENldaLekG~aNL~kHIeNi~-kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~ 145 (570)
.+.+.|++.+.|..+++.+.. +-..+|...+-+..| .-|...++ +.+.+++++.+
T Consensus 92 ~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~-p~~~~a~~----~~~~i~~fl~~ 147 (175)
T cd02907 92 ECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGF-PLERCVET----IVEAVKEFLET 147 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCC-CHHHHHHH----HHHHHHHHHHh
Confidence 356789999999998887642 147788877777778 43444444 55667777765
No 167
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=20.16 E-value=2.4e+02 Score=22.95 Aligned_cols=47 Identities=15% Similarity=-0.029 Sum_probs=25.1
Q ss_pred hhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 93 QGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 93 kG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.+.....+.+.+... .++++ .+++||.+..+.+ +.+.+++....++.
T Consensus 92 ~~~~~~~~~~~~~~~-~~~p~-ivv~nK~D~~~~~-------~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 92 EILEKQTKEIIHHAE-SNVPI-ILVGNKIDLRDAK-------LKTHVAFLFAKLNG 138 (161)
T ss_pred hHhHHHHHHHHHhcc-cCCcE-EEEEEcccCCcch-------hhHHHHHHHhhccC
Confidence 333333344444444 27888 8899999553322 23555555555543
No 168
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=20.14 E-value=5.7e+02 Score=26.17 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=27.3
Q ss_pred hhhchHHHHHhhhhhcC--CCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 94 GCIKGRGQFSPILLICG--LQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 94 G~aNL~kHIeNi~kvfG--VnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
|+.||.+-++.+++ +| ++...+.+|++.. ++ ..+++|+++|+.+
T Consensus 164 ~a~~l~k~v~~~~~-~~~~v~i~GVV~N~~~~---~~---------~~~~~~~~~~i~v 209 (296)
T TIGR02016 164 VANNICNAVEYFRK-LGGRVGLLGLVVNRDDG---SG---------EAQAFAREVGIPV 209 (296)
T ss_pred HHHHHHHHHHHHHH-cCCCCcceEEEEeCCCC---cc---------HHHHHHHHcCCCe
Confidence 44466666665555 43 5566788999722 22 2467788888654
No 169
>PRK14527 adenylate kinase; Provisional
Probab=20.12 E-value=4.9e+02 Score=24.20 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=59.5
Q ss_pred cEEEccCCCCCCCccccccccccccCCCCCCeEEEE-Eeehhhhhc-CCCCCCCCCCCCCCccccCChHHHHhhhhchHH
Q psy8591 23 AYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLV-TTVRALKMH-GGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRG 100 (570)
Q Consensus 23 DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLV-ATVRALK~H-GG~~~v~~G~PL~~el~eENldaLekG~aNL~k 100 (570)
+||+- ||....--.+.|+..++..|..+++++.+ +.---++.. -+... ...-.+.|.+.+++=+++...
T Consensus 85 ~~VlD--Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~-------~~~r~dd~~~~~~~R~~~y~~ 155 (191)
T PRK14527 85 RVIFD--GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR-------QEGRSDDNEETVRRRQQVYRE 155 (191)
T ss_pred cEEEc--CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc-------cCCCCCCCHHHHHHHHHHHHH
Confidence 46664 78766555566677788889999986543 322222111 01110 011113367788888888888
Q ss_pred HHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
+++.+.+.|.-+-....|| -++.+ .+.+++.|..+|
T Consensus 156 ~~~~v~~~y~~~~~~~~id------~~~~~-----~~v~~~i~~~l~ 191 (191)
T PRK14527 156 QTQPLVDYYEARGHLKRVD------GLGTP-----DEVYARILKALG 191 (191)
T ss_pred HhHHHHHHHHhcCCEEEEE------CCCCH-----HHHHHHHHHhhC
Confidence 8888887665432123333 34444 245677777665
No 170
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.07 E-value=5.9e+02 Score=22.18 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=39.8
Q ss_pred CCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCC
Q psy8591 49 GKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQ 128 (570)
Q Consensus 49 GL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~ 128 (570)
...||.+||-. |......| .+++...+++.++...| +. .+.++.++.+.-+...+...
T Consensus 38 ~~~pd~vvi~~---------G~ND~~~~---------~~~~~~~~~~~~~i~~i---~~-~~p~~~ii~~~~~p~~~~~~ 95 (157)
T cd01833 38 AAKPDVVLLHL---------GTNDLVLN---------RDPDTAPDRLRALIDQM---RA-ANPDVKIIVATLIPTTDASG 95 (157)
T ss_pred cCCCCEEEEec---------cCcccccC---------CCHHHHHHHHHHHHHHH---HH-hCCCeEEEEEeCCCCCCcch
Confidence 46888888744 44422111 24555666555555444 43 23333233333331112221
Q ss_pred cccccchhHHHHHHHHHhCC
Q psy8591 129 PITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 129 EI~~~~~~~~lR~~C~~lGv 148 (570)
.-....+.+.++++|++.+.
T Consensus 96 ~~~~~~~n~~l~~~~~~~~~ 115 (157)
T cd01833 96 NARIAEYNAAIPGVVADLRT 115 (157)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 12235678889999998653
Done!