Query psy8591
Match_columns 570
No_of_seqs 200 out of 827
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 22:43:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 1.1E-53 3.6E-58 447.0 6.0 148 22-200 281-428 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 2.9E-53 1E-57 445.5 2.4 148 22-200 295-442 (557)
3 3j2k_7 ERF3, eukaryotic polype 91.5 0.077 2.6E-06 53.9 2.5 71 97-172 142-217 (439)
4 1r5b_A Eukaryotic peptide chai 87.9 0.48 1.6E-05 48.5 5.0 84 37-149 131-221 (467)
5 1f60_A Elongation factor EEF1A 80.2 1.9 6.4E-05 44.1 5.4 56 91-148 123-181 (458)
6 3izq_1 HBS1P, elongation facto 79.2 1.3 4.5E-05 47.3 4.0 50 97-148 292-341 (611)
7 3kzg_A Arginine 3RD transport 78.6 4.1 0.00014 35.1 6.3 99 125-232 21-120 (237)
8 3mca_A HBS1, elongation factor 74.5 0.9 3.1E-05 48.3 1.2 50 97-148 302-352 (592)
9 1cp2_A CP2, nitrogenase iron p 69.0 13 0.00044 33.7 7.3 48 93-149 156-203 (269)
10 3fst_A 5,10-methylenetetrahydr 68.8 2 7E-05 42.7 2.2 111 20-152 175-296 (304)
11 3tql_A Arginine-binding protei 68.2 5 0.00017 33.6 4.2 99 125-233 19-120 (227)
12 3mpk_A Virulence sensor protei 66.2 3.3 0.00011 37.0 2.8 102 121-232 45-149 (267)
13 3del_B Arginine binding protei 66.1 2.7 9.3E-05 36.1 2.1 101 121-231 24-127 (242)
14 1zun_B Sulfate adenylate trans 64.5 4 0.00014 41.0 3.3 49 97-147 144-192 (434)
15 3hv1_A Polar amino acid ABC up 64.3 3.9 0.00013 36.1 2.9 101 124-233 37-138 (268)
16 1jny_A EF-1-alpha, elongation 64.0 7.8 0.00027 39.0 5.3 53 95-148 129-182 (435)
17 3of5_A Dethiobiotin synthetase 61.2 9.3 0.00032 35.6 4.9 22 8-29 96-118 (228)
18 3k4u_A Binding component of AB 60.4 5.6 0.00019 34.5 3.1 99 125-232 22-125 (245)
19 1byi_A Dethiobiotin synthase; 59.5 33 0.0011 30.1 7.9 45 97-149 154-198 (224)
20 2afh_E Nitrogenase iron protei 58.5 29 0.00099 32.1 7.7 91 19-149 116-206 (289)
21 3kbr_A Cyclohexadienyl dehydra 58.1 3 0.0001 35.8 1.0 102 121-231 28-134 (239)
22 4dzz_A Plasmid partitioning pr 57.6 20 0.0007 30.7 6.1 92 14-149 68-160 (206)
23 2y7i_A STM4351; arginine-bindi 56.6 6.8 0.00023 33.1 2.9 97 125-232 23-122 (229)
24 2hiy_A Hypothetical protein; C 55.9 8.1 0.00028 35.8 3.5 53 109-176 12-65 (183)
25 3p26_A Elongation factor 1 alp 55.3 9.5 0.00033 38.9 4.3 50 97-148 158-207 (483)
26 2q88_A EHUB, putative ABC tran 55.1 3.6 0.00012 35.8 1.0 98 125-231 29-133 (257)
27 1g3q_A MIND ATPase, cell divis 53.3 54 0.0019 28.8 8.3 35 18-60 108-142 (237)
28 3clv_A RAB5 protein, putative; 53.2 15 0.00051 30.4 4.4 48 96-150 133-180 (208)
29 1lst_A Lysine, arginine, ornit 52.3 7 0.00024 33.4 2.3 99 124-232 20-121 (239)
30 1s0u_A EIF-2-gamma, translatio 51.2 11 0.00037 37.6 3.8 68 99-174 124-192 (408)
31 2efe_B Small GTP-binding prote 48.6 20 0.00069 29.5 4.5 66 97-174 102-169 (181)
32 3dci_A Arylesterase; SGNH_hydr 48.2 48 0.0016 29.4 7.2 19 132-150 175-193 (232)
33 3apt_A Methylenetetrahydrofola 48.1 3.7 0.00013 40.6 -0.1 107 19-149 171-290 (310)
34 3end_A Light-independent proto 47.8 85 0.0029 29.2 9.1 45 94-150 196-240 (307)
35 4eq9_A ABC transporter substra 46.3 3.8 0.00013 35.1 -0.3 99 125-232 24-125 (246)
36 3i6v_A Periplasmic His/Glu/Gln 45.8 12 0.00041 32.5 2.8 96 121-231 18-115 (232)
37 2khf_A PLNJ; anti-microbial, b 45.7 7.7 0.00026 26.7 1.2 16 3-18 2-17 (26)
38 3t1o_A Gliding protein MGLA; G 45.7 19 0.00066 29.9 3.9 49 92-148 116-165 (198)
39 4dz1_A DALS D-alanine transpor 44.6 9.6 0.00033 33.7 2.0 107 124-239 45-155 (259)
40 3avx_A Elongation factor TS, e 44.0 6.2 0.00021 46.7 0.9 48 98-148 400-447 (1289)
41 1d2e_A Elongation factor TU (E 43.5 8.4 0.00029 38.3 1.6 48 98-148 107-154 (397)
42 2ce2_X GTPase HRAS; signaling 43.0 24 0.00082 28.1 4.0 34 109-149 107-140 (166)
43 1hyq_A MIND, cell division inh 42.5 56 0.0019 29.4 6.8 86 18-150 107-192 (263)
44 3con_A GTPase NRAS; structural 42.2 20 0.00068 30.1 3.5 34 109-149 125-158 (190)
45 2c5m_A CTP synthase; cytidine 42.0 17 0.00058 37.0 3.5 48 10-57 142-238 (294)
46 1wms_A RAB-9, RAB9, RAS-relate 40.6 29 0.001 28.4 4.2 34 109-149 115-149 (177)
47 3rjt_A Lipolytic protein G-D-S 40.6 49 0.0017 27.8 5.7 18 132-149 153-170 (216)
48 2gf0_A GTP-binding protein DI- 40.1 29 0.001 29.1 4.3 51 110-174 114-165 (199)
49 4h5g_A Amino acid ABC superfam 39.6 10 0.00034 33.5 1.3 98 125-231 32-132 (243)
50 3hp4_A GDSL-esterase; psychrot 39.0 27 0.00092 29.2 3.9 101 22-150 37-140 (185)
51 3h7m_A Sensor protein; histidi 39.0 15 0.0005 31.0 2.2 99 123-231 26-126 (234)
52 3q85_A GTP-binding protein REM 38.9 29 0.00098 28.3 3.9 68 95-174 91-161 (169)
53 3fw2_A Thiol-disulfide oxidore 38.9 42 0.0014 27.4 5.0 24 150-174 120-143 (150)
54 2wzn_A TET3, 354AA long hypoth 38.5 26 0.00088 31.0 3.8 28 136-164 33-60 (354)
55 2c78_A Elongation factor TU-A; 38.2 9.4 0.00032 37.8 1.0 49 97-148 115-163 (405)
56 2iee_A ORF2, probable ABC tran 37.6 12 0.0004 33.5 1.5 95 128-231 44-141 (271)
57 1ivn_A Thioesterase I; hydrola 37.6 49 0.0017 28.0 5.3 99 24-150 35-136 (190)
58 1yzf_A Lipase/acylhydrolase; s 37.6 1.1E+02 0.0036 25.3 7.2 19 132-150 128-146 (195)
59 1ii5_A SLR1257 protein; membra 37.0 8.2 0.00028 32.6 0.4 101 125-232 22-126 (233)
60 3qax_A Probable ABC transporte 37.0 17 0.00059 31.4 2.4 99 124-232 47-149 (268)
61 1wdn_A GLNBP, glutamine bindin 36.6 26 0.00088 29.3 3.3 93 132-232 25-119 (226)
62 4f3p_A Glutamine-binding perip 36.5 24 0.00082 30.7 3.3 97 127-232 42-140 (249)
63 4evm_A Thioredoxin family prot 36.3 65 0.0022 24.7 5.4 47 95-148 37-83 (138)
64 3c5h_A Glucocorticoid receptor 36.0 36 0.0012 31.3 4.5 33 109-149 197-230 (255)
65 2xj4_A MIPZ; replication, cell 35.8 67 0.0023 30.0 6.4 43 17-67 99-141 (286)
66 1g16_A RAS-related protein SEC 35.2 37 0.0013 27.4 4.0 65 97-174 93-159 (170)
67 3iev_A GTP-binding protein ERA 34.9 25 0.00085 33.7 3.4 62 102-174 115-176 (308)
68 4e3q_A Pyruvate transaminase; 34.7 25 0.00087 36.3 3.6 17 135-151 419-435 (473)
69 1dos_A Aldolase class II; lyas 34.3 51 0.0017 33.9 5.7 48 56-113 57-104 (358)
70 2obn_A Hypothetical protein; s 34.1 19 0.00065 36.7 2.5 120 17-174 221-346 (349)
71 3elf_A Fructose-bisphosphate a 33.6 40 0.0014 34.6 4.8 50 55-121 48-97 (349)
72 3q72_A GTP-binding protein RAD 33.3 52 0.0018 26.6 4.6 66 97-174 90-158 (166)
73 3ha9_A Uncharacterized thiored 32.9 91 0.0031 25.7 6.1 12 137-148 99-110 (165)
74 4fxe_A Antitoxin RELB; toxin/a 32.1 11 0.00039 31.1 0.4 39 97-153 11-49 (79)
75 2fg5_A RAB-22B, RAS-related pr 31.6 29 0.001 29.5 3.0 66 97-174 113-180 (192)
76 4dsu_A GTPase KRAS, isoform 2B 31.4 74 0.0025 26.2 5.3 45 99-150 98-142 (189)
77 3ea0_A ATPase, para family; al 30.6 1.8E+02 0.0061 25.5 7.9 34 19-60 116-149 (245)
78 1s1m_A CTP synthase; CTP synth 30.0 22 0.00074 38.4 2.2 53 6-58 118-211 (545)
79 3dc7_A Putative uncharacterize 29.7 2.2E+02 0.0077 24.7 8.4 19 132-150 159-177 (232)
80 4djd_C C/Fe-SP, corrinoid/iron 29.5 27 0.00092 37.1 2.8 95 82-205 159-270 (446)
81 3k9g_A PF-32 protein; ssgcid, 29.1 81 0.0028 28.6 5.6 38 15-60 138-175 (267)
82 2cxx_A Probable GTP-binding pr 29.0 29 0.001 28.8 2.4 33 109-150 121-153 (190)
83 3ez9_A Para; DNA binding, wing 28.9 40 0.0014 33.2 3.8 72 19-121 245-320 (403)
84 4gvo_A LMO2349 protein; struct 28.8 12 0.00042 32.9 0.1 33 121-154 22-55 (243)
85 3cph_A RAS-related protein SEC 28.8 57 0.0019 27.7 4.3 65 96-174 109-176 (213)
86 3qtg_A Pyruvate kinase, PK; TI 28.7 15 0.00052 39.0 0.8 44 13-60 238-288 (461)
87 1xt8_A Putative amino-acid tra 28.4 24 0.00082 31.8 1.9 99 125-232 61-163 (292)
88 2gf9_A RAS-related protein RAB 28.0 39 0.0013 28.5 3.1 66 97-174 112-179 (189)
89 2h30_A Thioredoxin, peptide me 27.3 98 0.0034 25.2 5.3 38 141-178 112-155 (164)
90 4i62_A Amino acid ABC transpor 27.1 35 0.0012 29.5 2.7 99 125-232 59-160 (269)
91 3kij_A Probable glutathione pe 26.8 1.1E+02 0.0038 26.0 5.8 37 110-153 71-108 (180)
92 3bzw_A Putative lipase; protei 26.6 69 0.0024 29.3 4.7 18 132-149 195-212 (274)
93 2pyy_A Ionotropic glutamate re 26.4 18 0.00061 30.2 0.7 92 132-232 24-122 (228)
94 1ky3_A GTP-binding protein YPT 26.3 71 0.0024 26.0 4.3 36 109-149 117-153 (182)
95 2nzj_A GTP-binding protein REM 26.3 56 0.0019 26.6 3.6 53 109-174 110-163 (175)
96 3fgn_A Dethiobiotin synthetase 26.0 57 0.0019 31.2 4.2 23 7-29 112-134 (251)
97 2yjp_A Putative ABC transporte 25.8 26 0.00089 31.8 1.7 98 125-232 72-174 (291)
98 4ad1_A Glycosyl hydrolase fami 25.8 38 0.0013 34.5 3.1 49 97-153 105-154 (380)
99 1ek0_A Protein (GTP-binding pr 25.7 75 0.0026 25.5 4.2 49 97-150 93-145 (170)
100 2ph1_A Nucleotide-binding prot 25.5 1.8E+02 0.0062 26.5 7.3 76 11-122 116-193 (262)
101 4bas_A ADP-ribosylation factor 25.4 1.5E+02 0.0052 24.7 6.2 13 110-123 127-139 (199)
102 1vjg_A Putative lipase from th 25.0 23 0.0008 30.7 1.2 19 132-150 152-170 (218)
103 1z06_A RAS-related protein RAB 24.8 67 0.0023 27.0 4.0 36 109-150 126-161 (189)
104 3qxc_A Dethiobiotin synthetase 24.5 48 0.0016 31.5 3.3 23 7-29 117-139 (242)
105 3gb0_A Peptidase T; NP_980509. 24.5 1.8E+02 0.0062 27.7 7.4 56 90-150 257-314 (373)
106 2g6b_A RAS-related protein RAB 24.5 93 0.0032 25.5 4.7 66 97-174 101-168 (180)
107 1upt_A ARL1, ADP-ribosylation 24.3 46 0.0016 27.0 2.8 14 109-123 107-120 (171)
108 3bdk_A D-mannonate dehydratase 24.2 45 0.0016 34.1 3.3 22 91-113 99-120 (386)
109 3cbq_A GTP-binding protein REM 24.1 87 0.003 27.1 4.7 68 95-174 112-182 (195)
110 3t5g_A GTP-binding protein RHE 24.1 1.6E+02 0.0054 24.3 6.1 54 109-174 110-163 (181)
111 2bov_A RAla, RAS-related prote 24.1 55 0.0019 27.6 3.3 53 109-174 118-171 (206)
112 3kkq_A RAS-related protein M-R 23.8 90 0.0031 25.8 4.5 37 108-150 121-157 (183)
113 3ffv_A Protein SYD; membrane, 23.7 71 0.0024 30.3 4.3 73 81-181 102-177 (181)
114 1u83_A Phosphosulfolactate syn 23.5 36 0.0012 34.3 2.3 49 98-154 82-131 (276)
115 3khd_A Pyruvate kinase; malari 23.4 17 0.00057 39.3 -0.1 44 13-60 272-322 (520)
116 1x3s_A RAS-related protein RAB 23.3 1E+02 0.0036 25.5 4.8 47 97-150 105-154 (195)
117 2v25_A Major cell-binding fact 23.2 49 0.0017 28.3 2.8 103 132-242 62-169 (259)
118 1c1y_A RAS-related protein RAP 23.1 82 0.0028 25.3 4.0 47 97-149 92-142 (167)
119 1ni5_A Putative cell cycle pro 23.0 57 0.0019 33.3 3.7 40 109-154 41-80 (433)
120 1k7j_A Protein YCIO, protein T 22.8 31 0.0011 32.1 1.7 49 16-68 21-79 (206)
121 2gs3_A PHGPX, GPX-4, phospholi 22.7 1.2E+02 0.004 26.1 5.2 37 110-153 82-118 (185)
122 2a5j_A RAS-related protein RAB 22.6 38 0.0013 28.7 2.0 48 97-150 111-160 (191)
123 3a2k_A TRNA(Ile)-lysidine synt 22.5 39 0.0013 34.7 2.4 40 109-154 45-85 (464)
124 2fu5_C RAS-related protein RAB 22.3 1.1E+02 0.0037 25.3 4.7 67 96-174 97-165 (183)
125 2vha_A Periplasmic binding tra 22.1 33 0.0011 30.6 1.6 100 124-232 33-140 (287)
126 3t5d_A Septin-7; GTP-binding p 21.5 91 0.0031 28.9 4.5 36 110-149 144-179 (274)
127 3n5f_A L-carbamoylase, N-carba 21.4 1.1E+02 0.0037 29.9 5.2 50 95-149 297-346 (408)
128 1vco_A CTP synthetase; tetrame 21.2 34 0.0012 36.9 1.7 52 7-58 128-222 (550)
129 3tkl_A RAS-related protein RAB 21.2 1.5E+02 0.0052 24.6 5.4 49 97-151 106-156 (196)
130 3bc1_A RAS-related protein RAB 21.1 1.4E+02 0.0047 24.5 5.1 48 97-150 111-161 (195)
131 1zbd_A Rabphilin-3A; G protein 21.0 1.2E+02 0.0041 25.7 4.8 66 97-174 98-165 (203)
132 3nva_A CTP synthase; rossman f 20.9 28 0.00096 37.8 1.0 48 10-58 122-213 (535)
133 2rk0_A Glyoxalase/bleomycin re 20.6 75 0.0026 25.3 3.3 19 150-168 112-130 (136)
134 4h08_A Putative hydrolase; GDS 20.5 74 0.0025 27.2 3.4 18 132-149 138-155 (200)
135 1r2q_A RAS-related protein RAB 20.4 94 0.0032 24.9 3.9 67 95-174 94-163 (170)
136 3rza_A Tripeptidase; phosphory 20.3 2.2E+02 0.0076 27.6 7.1 50 96-150 283-334 (396)
137 2whl_A Beta-mannanase, baman5; 20.3 78 0.0027 29.5 3.8 48 98-153 33-83 (294)
138 4djt_A GTP-binding nuclear pro 20.1 1.1E+02 0.0037 26.3 4.4 54 109-174 116-169 (218)
139 2h57_A ADP-ribosylation factor 20.1 1.6E+02 0.0054 24.7 5.4 27 96-123 107-138 (190)
140 1wcv_1 SOJ, segregation protei 20.0 1.1E+02 0.0037 27.8 4.6 34 20-61 110-143 (257)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=1.1e-53 Score=447.03 Aligned_cols=148 Identities=24% Similarity=0.270 Sum_probs=142.8
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
.||||||||||||||||||||||||++||+|||+||||||||||||||++ .++|.+||+++|++||+||.||
T Consensus 281 aDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~--------~~~l~~enl~al~~G~~NL~kH 352 (543)
T 3do6_A 281 SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGAN--------LKNIHEENLEALKEGFKNLRVH 352 (543)
T ss_dssp CSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCC--------GGGTTSCCHHHHHHHHHHHHHH
T ss_pred cCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCC--------hhhcCccCHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhcc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVES 181 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~ 181 (570)
|+|+++ ||+|+ +||||+| .+|+++|| ++||++|+++|+++++++ +|+.++.||.+||+.+ +
T Consensus 353 Ien~~~-fGvpv-VVaiN~F-~tDT~aEi------~~v~~~~~~~G~~~~~s~----~wa~GG~G~~~LA~~V------v 413 (543)
T 3do6_A 353 VENLRK-FNLPV-VVALNRF-STDTEKEI------AYVVKECEKLGVRVAVSE----VFKKGSEGGVELAKAV------A 413 (543)
T ss_dssp HHHHHH-TTCCE-EEEEECC-TTCCHHHH------HHHHHHHHTTTCEEEEEC----HHHHGGGGSHHHHHHH------H
T ss_pred HHHHHH-cCCCe-EEEEeCC-CCCCHHHH------HHHHHHHHHcCCCEEEec----hhhccchhHHHHHHHH------H
Confidence 999999 99999 9999999 99999999 999999999999999998 9999999999999999 7
Q ss_pred ccccccCCCCccccccccc
Q psy8591 182 RQTDESHDMGHFEYGFPSM 200 (570)
Q Consensus 182 r~~des~~~~~Fe~~y~~~ 200 (570)
+++++ ++|+|+|++-
T Consensus 414 ~~~e~----~~f~~lY~~~ 428 (543)
T 3do6_A 414 EAAKD----VEPAYLYEMN 428 (543)
T ss_dssp HHCCC----CCCCCSSCTT
T ss_pred HHhcC----CCcccccCCC
Confidence 88873 6899999984
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=2.9e-53 Score=445.45 Aligned_cols=148 Identities=26% Similarity=0.330 Sum_probs=141.9
Q ss_pred ccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHH
Q psy8591 22 IAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQ 101 (570)
Q Consensus 22 ~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kH 101 (570)
.||||||||||||||||||||||||++||+|||+||||||||||||||++ +++|.+||+++|++||+||.||
T Consensus 295 ~dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~--------~~~l~~en~~al~~G~~NL~kH 366 (557)
T 3pzx_A 295 ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENLEALREGFANLEKH 366 (557)
T ss_dssp CSEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCC--------GGGTTSCCHHHHHHHHHHHHHH
T ss_pred cCeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCC--------hhhcCccCHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcccCcchhcc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNILPGFLVES 181 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~ 181 (570)
|+|+++ ||+|+ +||||+| .+|+++|| ++||++|+++|++++++ |+.|+.||.+||+.+ +
T Consensus 367 ien~~~-fGvpv-VVaiN~F-~tDT~aEi------~~v~~~~~~~G~~~~~~------wa~GG~G~~~LA~~V------v 425 (557)
T 3pzx_A 367 IENIGK-FGVPA-VVAINAF-PTDTEAEL------NLLYELCAKAGAEVALS------WAKGGEGGLELARKV------L 425 (557)
T ss_dssp HHHHHT-TTCCE-EEEEECC-TTCCHHHH------HHHHHHCCSSEEEEECH------HHHGGGGGHHHHHHH------H
T ss_pred HHHHHH-cCCCe-EEEEeCC-CCCCHHHH------HHHHHHHHHcCCCEEEE------ecccchhHHHHHHHH------H
Confidence 999999 99999 9999999 99999999 99999999999999987 999999999999999 8
Q ss_pred ccccccCCCCccccccccc
Q psy8591 182 RQTDESHDMGHFEYGFPSM 200 (570)
Q Consensus 182 r~~des~~~~~Fe~~y~~~ 200 (570)
+++++ ..++|+|+|++-
T Consensus 426 ~~~~~--~~~~f~~lY~~~ 442 (557)
T 3pzx_A 426 QTLES--RPSNFHVLYNLD 442 (557)
T ss_dssp HHHHH--CCCCCCCSSCTT
T ss_pred HHHhc--CCCCccccCCCC
Confidence 88887 347899999984
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=91.53 E-value=0.077 Score=53.90 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=43.9
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCC-CcccccchhHHHHHHHHHhCCc----eeeeCCCCceEeeeccCchhhh
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVS-QPITVGKLSKHYRQLCLFVGLF----FEVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd-~EI~~~~~~~~lR~~C~~lGv~----fav~~~~g~V~s~~~~Gg~eLa 171 (570)
....|+..+.. .|++-.++++||.+..+.+ .+-...++.+.+++++.++|+. +.+.. +-|+-+.|=.+|.
T Consensus 142 qt~e~l~~~~~-~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~----iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 142 QTREHAMLAKT-AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMP----CSGLTGANLKEQS 216 (439)
T ss_pred hHHHHHHHHHH-cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEE----eeccCCccccccc
Confidence 55678887777 8998448899999542221 1112344557778888888873 44544 3345566666655
Q ss_pred c
Q psy8591 172 N 172 (570)
Q Consensus 172 ~ 172 (570)
+
T Consensus 217 ~ 217 (439)
T 3j2k_7 217 D 217 (439)
T ss_pred c
Confidence 4
No 4
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=87.91 E-value=0.48 Score=48.50 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=45.3
Q ss_pred cccccccccccCCC-CCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhh---chHHHHHhhhhhcCCC
Q psy8591 37 MEKFFNIKCRTSGK-IPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCI---KGRGQFSPILLICGLQ 112 (570)
Q Consensus 37 aEKF~DIKCR~sGL-~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~a---NL~kHIeNi~kvfGVn 112 (570)
-|+|. +.+..|+ ..|+++||.-++. ...+.||. ....|+..+.. .|++
T Consensus 131 h~~f~--~~~~~~~~~aD~~ilVvDa~~-------------------------g~~e~sf~~~~qt~e~l~~~~~-~~vp 182 (467)
T 1r5b_A 131 HKGYV--TNMINGASQADIGVLVISARR-------------------------GEFEAGFERGGQTREHAVLART-QGIN 182 (467)
T ss_dssp -------------TTSCSEEEEEEECST-------------------------THHHHTTSTTCCHHHHHHHHHH-TTCS
T ss_pred cHHHH--HHHHhhcccCCEEEEEEeCCc-------------------------CccccccCCCCcHHHHHHHHHH-cCCC
Confidence 34443 3344454 6899999885431 12344554 35667777666 8998
Q ss_pred cceeeecCCCCCCCC--CcccccchhHHHHHHHHHh-CCc
Q psy8591 113 KHRTSKNKTSMFDVS--QPITVGKLSKHYRQLCLFV-GLF 149 (570)
Q Consensus 113 vfvVAiNkF~~~Dtd--~EI~~~~~~~~lR~~C~~l-Gv~ 149 (570)
.+++++||.+..+.+ ++. +..+.+.+++++.++ |+.
T Consensus 183 ~iivviNK~Dl~~~~~~~~~-~~~i~~e~~~~l~~~~g~~ 221 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEER-YKECVDKLSMFLRRVAGYN 221 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHH-HHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEEECccCCCccccHHH-HHHHHHHHHHHHHHhcCCC
Confidence 458999999653322 111 223445678888887 764
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=80.22 E-value=1.9 Score=44.06 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=35.6
Q ss_pred HHhhhh---chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 91 EHQGCI---KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 91 LekG~a---NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
.++||. ....|+..+.. .|++.+++++||.+..+.+++ .+..+.+.+++++.++|+
T Consensus 123 ~~~sf~~~~qt~~~~~~~~~-~~v~~iivviNK~Dl~~~~~~-~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 123 FEAGISKDGQTREHALLAFT-LGVRQLIVAVNKMDSVKWDES-RFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp HHHHTCTTSHHHHHHHHHHH-TTCCEEEEEEECGGGGTTCHH-HHHHHHHHHHHHHHHHTC
T ss_pred cccccCcchhHHHHHHHHHH-cCCCeEEEEEEccccccCCHH-HHHHHHHHHHHHHHHcCC
Confidence 344554 45667776665 888744889999965432222 123445678888888886
No 6
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=79.16 E-value=1.3 Score=47.28 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=34.6
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
....|+..+.. +|++-.++++||.+..+.+ +....++.+.+++++.++|+
T Consensus 292 qt~e~l~~~~~-lgi~~iIVVvNKiDl~~~~-~~~~~ei~~~l~~~l~~~g~ 341 (611)
T 3izq_1 292 QTKEHMLLASS-LGIHNLIIAMNKMDNVDWS-QQRFEEIKSKLLPYLVDIGF 341 (611)
T ss_dssp HHHHHHHHHHT-TTCCEEEEEEECTTTTTTC-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-cCCCeEEEEEecccccchh-HHHHHHHHHHHHHHHHhhcc
Confidence 45677777776 8887458899999654422 23344556778888888887
No 7
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=78.56 E-value=4.1 Score=35.13 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIP 203 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~ 203 (570)
|.+.++ .|-..++++++|+++|+.+.+..-+ .....+...|-.++ .+.-+..+.+ ....|.|.-|.+...
T Consensus 21 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~------~~~~~~~~~~--r~~~~~fs~p~~~~~ 91 (237)
T 3kzg_A 21 GNNSSL-YGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDL------VIASMIITDE--RKKHFIFSLPYMESN 91 (237)
T ss_dssp CTTSCC-BSHHHHHHHHHHHHTTCEEEEEEECGGGHHHHHHTTSSSE------ECSSCBCCTT--GGGTCEECCCSBCCE
T ss_pred CCCCCE-eeehHHHHHHHHHHhCCceEEEEcCHHHHHHHHhCCCCCE------EEEccccChh--Hhccceeeeeeeecc
Confidence 566665 6888899999999999998887411 11111122222221 1111233344 335677777777777
Q ss_pred ceecccccccccccccccCceeeEEeecc
Q psy8591 204 SYVVSHSKEDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
..++.+....+..-.--.|+++|+++-+.
T Consensus 92 ~~~~~~~~~~~~~~~dL~g~~i~~~~g~~ 120 (237)
T 3kzg_A 92 SQYITTVDSKISTFDDLHGKKIGVRKGTP 120 (237)
T ss_dssp EEEEEETTCSCCSGGGGTTCEEEEETTST
T ss_pred eEEEEECCCCCCCHHHhCCCEEEEecCCH
Confidence 77776654332221122589999998665
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=74.47 E-value=0.9 Score=48.30 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=31.7
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHH-HHhCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLC-LFVGL 148 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C-~~lGv 148 (570)
....|+..+.. +|++..++++||.+..+.+++. +..+.+.+++++ ..+|+
T Consensus 302 qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~~~-~~~i~~el~~~l~~~~g~ 352 (592)
T 3mca_A 302 QTREHAYLLRA-LGISEIVVSVNKLDLMSWSEDR-FQEIKNIVSDFLIKMVGF 352 (592)
T ss_dssp SHHHHHHHHHH-SSCCCEEEEEECGGGGTTCHHH-HHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHH-cCCCeEEEEEeccccccccHHH-HHHHHHHHHHHHHHhhCC
Confidence 44567777666 8998558899998654422221 233446666666 66787
No 9
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=68.99 E-value=13 Score=33.75 Aligned_cols=48 Identities=6% Similarity=-0.098 Sum_probs=30.2
Q ss_pred hhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 93 QGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 93 kG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.|+.++.+.++.+.+..+++...+.+|++ .. ..+- +.++++++.+|..
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~gvv~N~~-~~--~~~~------~~~~~l~~~~~~~ 203 (269)
T 1cp2_A 156 YAANNISKGIQKYAKSGGVRLGGIICNSR-KV--ANEY------ELLDAFAKELGSQ 203 (269)
T ss_dssp HHHHHHHHHHHHHBTTBBCEEEEEEEECC-SS--SCCH------HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeecC-Cc--chhH------HHHHHHHHHcCCc
Confidence 34556666666665435677667889998 22 2222 5677777888865
No 10
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=68.77 E-value=2 Score=42.72 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=72.0
Q ss_pred ccccEEEccCCCCCCCccccccccccccCCCCCC---eEEEEEeehhhhhcCCCCCCCCCCCCCCcccc------CChHH
Q psy8591 20 LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPD---AVVLVTTVRALKMHGGGPSVVSGQPLKPEYTE------VSTST 90 (570)
Q Consensus 20 l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~Pd---avVLVATVRALK~HGG~~~v~~G~PL~~el~e------ENlda 90 (570)
.-+||+||-..|..|. +++|++ +||..|+.-- .+.-+++.+.+++... ..|-.+|+++.+ .|.++
T Consensus 175 AGAdf~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~----~~Gv~iP~~l~~~l~~~~dd~~~ 248 (304)
T 3fst_A 175 AGANRAITQFFFDVES-YLRFRD-RCVSAGIDVEIIPGILPVSNFKQAKKLAD----MTNVRIPAWMAQMFDGLDDDAET 248 (304)
T ss_dssp HTCCEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCSCHHHHHHHHH----HHTCCCCHHHHHHHTTCTTCHHH
T ss_pred cCCCEEEeCccCCHHH-HHHHHH-HHHhcCCCCcEEEEecccCCHHHHHHHHH----cCCCcCCHHHHHHHHhcCCCHHH
Confidence 4689999999997754 455665 8999998421 1122455666665421 124445654432 24455
Q ss_pred -HHhhhhchHHHHHhhhhhcCCC-cceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceee
Q psy8591 91 -EHQGCIKGRGQFSPILLICGLQ-KHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEV 152 (570)
Q Consensus 91 -LekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav 152 (570)
.+.|++-....|+.+.. .|++ +|--++|+. +.+++.|+.+|+.--+
T Consensus 249 ~~~~Gi~~a~e~~~~L~~-~gv~GiH~yt~n~~---------------~~~~~I~~~lg~~~~~ 296 (304)
T 3fst_A 249 RKLVGANIAMDMVKILSR-EGVKDFHFYTLNRA---------------EMSYAICHTLGVRPGL 296 (304)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCEEEEECTTCC---------------HHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCEEEECCCCCH---------------HHHHHHHHHhCCCcch
Confidence 67899888888888887 5554 444567777 7899999999985443
No 11
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=68.24 E-value=5 Score=33.61 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=54.9
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCCC-ceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSG-VVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIP 203 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g-~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~ 203 (570)
|.+.+. .|-..++++++|+++|+.+.+..-+. ....+...| +++..+.-+..+.+ ....|.|.-|.+-.+
T Consensus 19 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g------~~D~~~~~~~~~~~--r~~~~~~s~p~~~~~ 89 (227)
T 3tql_A 19 GPSGQV-EGFGADIVKAVCKQMQAVCTISNQPWDSLIPSLKLG------KFDALFGGMNITTA--RQKEVDFTDPYYTNS 89 (227)
T ss_dssp C--CCE-ESHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHT------SCSEECSSCBCCTT--GGGTEEECSCSBCCE
T ss_pred CCCCCc-ccchHHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCC------CCCEEEecCcCCHh--HHhheecccceeccc
Confidence 555554 67778999999999999998874210 000111122 23222222233444 335677766666666
Q ss_pred ceecccccccc--cccccccCceeeEEeecch
Q psy8591 204 SYVVSHSKEDV--SRDRISSGYTLGVVRTSGT 233 (570)
Q Consensus 204 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 233 (570)
..++.+..... +-+.+ .|+++|+++-+..
T Consensus 90 ~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~ 120 (227)
T 3tql_A 90 VSFIADKNTPLTLSKQGL-KGKIIGVQGGTTF 120 (227)
T ss_dssp EEEEEETTSCCCCSTTTT-TTCEEEEETTSHH
T ss_pred eEEEEeCCCCCCCCHHHh-CCCEEEEEecccH
Confidence 66666654333 22222 5999999885543
No 12
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=66.25 E-value=3.3 Score=36.98 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=61.1
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCC--CCceEeeeccCchhhhcccCcchhccccccccCCCCccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNP--SGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFP 198 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~--~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~ 198 (570)
|+..|.+.++ .|-..++++.+|+++|+.+.+..- -.....+...|-.++.- -+..+.+ ....|.|.-|
T Consensus 45 ~~~~~~~g~~-~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~~l~~G~~D~~~-------~~~~t~~--r~~~~~fs~p 114 (267)
T 3mpk_A 45 FTLFRTDEQF-GGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAG-------ALFVNSA--RESFLSFSRP 114 (267)
T ss_dssp TEECCTTCCC-BSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHHHHHTSCSEEE-------EEECCGG--GTTTEEECSC
T ss_pred eEEECCCCcE-eeeHHHHHHHHHHHHCCeEEEEecCCHHHHHHHHHCCCccEEe-------cccCChh--hhcceEechh
Confidence 3334666665 687889999999999999988841 12223334445444421 1233444 3466777777
Q ss_pred cccccceecccccc-cccccccccCceeeEEeecc
Q psy8591 199 SMLIPSYVVSHSKE-DVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 199 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (570)
.+..+..++.+... .+..-.--.|+++|+++-+.
T Consensus 115 ~~~~~~~l~~~~~~~~i~~~~dL~g~~i~v~~g~~ 149 (267)
T 3mpk_A 115 YVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSA 149 (267)
T ss_dssp SEEECEEEEEESSTTSCSSGGGCTTCEEEEETTCT
T ss_pred hccCceEEEEECCCCCCCCHHHHCCCEEEEeCCch
Confidence 77777777776542 22110111589999998543
No 13
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=66.07 E-value=2.7 Score=36.14 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=54.9
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCC-ceEeeeccCchhhhcccCcchhccccccccCCCCcccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSG-VVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g-~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
|...|.+.++ .|-..++++.+|+++|+.+.+..-+. ..+.+...|- ++..+.-+..+.+ ....|.| -|.
T Consensus 24 ~~~~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~------~D~~~~~~~~~~~--r~~~~~~-~p~ 93 (242)
T 3del_B 24 FEFVDKRGEV-VGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHR------IDAVITGMSITPS--RLKEILM-IPY 93 (242)
T ss_dssp TBEECTTSCE-ESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTS------SSEECSSBBCCHH--HHTTEEE-EEE
T ss_pred eeEECCCCCE-EEeeHHHHHHHHHHcCCceEEEEcCHHHHHHHHhCCC------cCEEEecCcCCHH--HHhcccc-eee
Confidence 3334566665 67788999999999999988875210 0111112222 2222212333444 2356666 666
Q ss_pred c--cccceecccccccccccccccCceeeEEeec
Q psy8591 200 M--LIPSYVVSHSKEDVSRDRISSGYTLGVVRTS 231 (570)
Q Consensus 200 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (570)
+ -....++.+....+..-.--.|+++|+++-+
T Consensus 94 ~~~~~~~~~~~~~~~~i~~~~dL~g~~i~v~~g~ 127 (242)
T 3del_B 94 YGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGT 127 (242)
T ss_dssp EEEEESEEEEEEESCCSCCCCGGGSSCEEEETTS
T ss_pred eecCCceEEEEeCCCCCCCHHHhCCCEEEEEcCc
Confidence 6 5556666654422221111258999998644
No 14
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=64.46 E-value=4 Score=41.03 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=31.5
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
....|+..+.. +|++.+.+++||.+..|.+++. +.++.+.++++++++|
T Consensus 144 qt~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~-~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 144 QTRRHSYIASL-LGIKHIVVAINKMDLNGFDERV-FESIKADYLKFAEGIA 192 (434)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHH-HHHHHHHHHHHHHHhC
Confidence 34556666555 7886448899999664433221 2334567888888888
No 15
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=64.33 E-value=3.9 Score=36.09 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=56.8
Q ss_pred CCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 124 FDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 124 ~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
.|.+.+. .|-..++++.+|+++|+.+.+..-+ ...+.+...| .++..+.-+..+.+ ....|.|.-|.+..
T Consensus 37 ~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g------~~D~~~~~~~~t~~--r~~~~~fs~p~~~~ 107 (268)
T 3hv1_A 37 EEKDGSY-IGFDIDLANAVFKLYGIDVEWQAIDWDMKETELKNG------TIDLIWNGYSVTDE--RKQSADFTEPYMVN 107 (268)
T ss_dssp ECTTSCE-ECHHHHHHHHHHHTTTCEEEEEECCGGGHHHHHHHT------SCSEECSSCBCCHH--HHTTCEECCCCEEE
T ss_pred ECCCCCE-EEehHHHHHHHHHHhCCcEEEEECCHHHHHHHHHCC------CCCEEEecCccCHH--HHhcCcCcHHHeeC
Confidence 3555555 6778899999999999999887421 0011111122 22221111233344 23567777676666
Q ss_pred cceecccccccccccccccCceeeEEeecch
Q psy8591 203 PSYVVSHSKEDVSRDRISSGYTLGVVRTSGT 233 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (570)
...++.+....+..-.=-.|+++|+++-+..
T Consensus 108 ~~~~~~~~~~~i~~~~dL~g~~i~v~~g~~~ 138 (268)
T 3hv1_A 108 EQVLVTKKSSGIDSVAGMAGKTLGAQAGSSG 138 (268)
T ss_dssp CEEEEEEGGGCCCSSGGGTTCCEEEETTCHH
T ss_pred ceEEEEECCCCCCCHHHhCCCEEEEEeCCch
Confidence 6666666443332212226899999876544
No 16
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=64.02 E-value=7.8 Score=39.04 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=35.4
Q ss_pred hhchHHHHHhhhhhcCCCcceeeecCCCCCCCC-CcccccchhHHHHHHHHHhCC
Q psy8591 95 CIKGRGQFSPILLICGLQKHRTSKNKTSMFDVS-QPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 95 ~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd-~EI~~~~~~~~lR~~C~~lGv 148 (570)
....++|+..+.. +|++.+++++||.+..+.+ .+-....+.+.+++++.++|+
T Consensus 129 ~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (435)
T 1jny_A 129 EGQTREHIILAKT-MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF 182 (435)
T ss_dssp TCHHHHHHHHHHH-TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHH-cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 3466788877776 8886558899999664421 111123445778899998886
No 17
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=61.18 E-value=9.3 Score=35.56 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=16.8
Q ss_pred HHHHhhhHHh-hhccccEEEccC
Q psy8591 8 FLKISRNFYD-TLLHIAYATQPN 29 (570)
Q Consensus 8 ~~~~~~~~~~-~~l~~DYVVTEA 29 (570)
+-+|.+.|.+ +..++||||-|.
T Consensus 96 ~~~i~~~~~~~l~~~~D~vlIEg 118 (228)
T 3of5_A 96 IENLKQFIEDKYNQDLDILFIEG 118 (228)
T ss_dssp HHHHHHHHHGGGGSSCSEEEEEE
T ss_pred HHHHHHHHHHHHHccCCEEEEEC
Confidence 4556666666 788999999996
No 18
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=60.42 E-value=5.6 Score=34.46 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=55.6
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCCC-ceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSG-VVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIP 203 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g-~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~ 203 (570)
|.+.++ .|-..++++++|+++|+.+.+..-+. ....+...|..++. +.-+..+.+ ....|.|.-|.+...
T Consensus 22 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~t~~--r~~~~~~s~p~~~~~ 92 (245)
T 3k4u_A 22 DKKGNV-IGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDII------ISGMTISQE--RNLRVNFVEPYIVVG 92 (245)
T ss_dssp ETTTEE-ESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTSCSEE------CSSCBCCHH--HHTTSEECSCSEEEC
T ss_pred CCCCCC-ccchHHHHHHHHHHhCCeEEEEEccHHHHHHHHhCCCcCEE------EecCcCCHH--HHhhcCcchhhheec
Confidence 555555 67788999999999999998875210 11112222333321 111223333 224577776777777
Q ss_pred ceeccccc--ccc-cccccc-cCceeeEEeecc
Q psy8591 204 SYVVSHSK--EDV-SRDRIS-SGYTLGVVRTSG 232 (570)
Q Consensus 204 ~~~~~~~~--~~~-~~~~~~-~~~~~~~~~~~~ 232 (570)
..++.+.. ..+ +-+.+. .|+++|+++.+.
T Consensus 93 ~~~~~~~~~~~~i~~~~dL~~~g~~i~v~~g~~ 125 (245)
T 3k4u_A 93 QSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVS 125 (245)
T ss_dssp EEEEEETTTTTTCCSGGGGCCSSCEEEEETTSH
T ss_pred eEEEEECCcccccCCHHHhccCCcEEEEeCCcH
Confidence 66666544 222 112222 399999987553
No 19
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=59.54 E-value=33 Score=30.08 Aligned_cols=45 Identities=11% Similarity=-0.065 Sum_probs=25.8
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
++.+.|+.+++ .++++..+.+|++.. ...+ ..+.++++.+.+|+.
T Consensus 154 ~~~~~i~~l~~-~~~~i~gvvlN~~~~---~~~~----~~~~~~~l~~~~~~~ 198 (224)
T 1byi_A 154 HAMLTAQVIQH-AGLTLAGWVANDVTP---PGKR----HAEYMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEECCSS---CCTT----HHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHH-CCCcEEEEEEeCCCC---chhh----HHHHHHHHHHHcCCC
Confidence 34445555554 678877889999932 2111 124455555556654
No 20
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=58.50 E-value=29 Score=32.13 Aligned_cols=91 Identities=5% Similarity=-0.134 Sum_probs=50.5
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG 98 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL 98 (570)
..++||||-.++ | ++...-|. +...-..-|.++||++.... . ..|+.++
T Consensus 116 ~~~yD~ViID~~-~-~~~~~~~~---~~~~~~~aD~viiv~~~~~~-------------------------s-~~~~~~~ 164 (289)
T 2afh_E 116 EDDLDFVFYDVL-G-DVVCGGFA---MPIRENKAQEIYIVCSGEMM-------------------------A-MYAANNI 164 (289)
T ss_dssp STTCSEEEEEEE-C-SSCCTTTT---HHHHTTCCCEEEEEECSSHH-------------------------H-HHHHHHH
T ss_pred ccCCCEEEEeCC-C-ccccchhh---hhhhhhhCCEEEEEecCCHH-------------------------H-HHHHHHH
Confidence 347899998885 2 22111111 11111346778888743322 1 2344566
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+.|+.+.+..+++...+.+|++. ....- +.+++++..+|..
T Consensus 165 ~~~l~~~~~~~~~~~~gvv~N~~~---~~~~~------~~~~~l~~~~g~~ 206 (289)
T 2afh_E 165 SKGIVKYANSGSVRLGGLICNSRN---TDRED------ELIIALANKLGTQ 206 (289)
T ss_dssp HHHHHHHHTTSCCEEEEEEEECCC---CTTHH------HHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCceEEEEEecCC---chhHH------HHHHHHHHHcCcc
Confidence 666766654457776678899982 12212 5567777777765
No 21
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=58.08 E-value=3 Score=35.75 Aligned_cols=102 Identities=13% Similarity=0.016 Sum_probs=55.8
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPS 199 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~ 199 (570)
|...|.+.++ .|-..++++++|+++|+.+.+..-+ .....+...|-.++ .+.-+..+.+ ....|.|.-|.
T Consensus 28 ~~~~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~------~~~~~~~t~~--r~~~~~fs~p~ 98 (239)
T 3kbr_A 28 FSYRTEEGGY-AGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDI------AMSGISINLE--RQRQAYFSIPY 98 (239)
T ss_dssp TEEECTTSCE-ESHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHTTCCSE------ECSSCBCCHH--HHTTCEECSCS
T ss_pred eeEECCCCCE-EeehHHHHHHHHHHHCCceEEEEeCHHHHHHHHHCCCcCE------EEeCCcCCHH--HcCccccchHH
Confidence 4334556665 6778899999999999998887421 11111222222222 2122233444 23556666676
Q ss_pred ccccceeccccccc--c-ccccc-ccCceeeEEeec
Q psy8591 200 MLIPSYVVSHSKED--V-SRDRI-SSGYTLGVVRTS 231 (570)
Q Consensus 200 ~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~~ 231 (570)
+.....++.+.... + +-+.+ ..|+++|+++-+
T Consensus 99 ~~~~~~~~~~~~~~~~i~~~~dL~~~g~~v~~~~g~ 134 (239)
T 3kbr_A 99 LRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGG 134 (239)
T ss_dssp EEECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTS
T ss_pred hccCcEEEEECCcccccCCHHHhcCCCcEEEEcCCC
Confidence 66666666554321 1 11112 138999998754
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=57.56 E-value=20 Score=30.68 Aligned_cols=92 Identities=8% Similarity=-0.071 Sum_probs=48.5
Q ss_pred hHHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHh
Q psy8591 14 NFYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQ 93 (570)
Q Consensus 14 ~~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLek 93 (570)
.+-.+..++||||-+.+-|.+...... .+. -|.+++|++... .. .
T Consensus 68 ~l~~l~~~yD~viiD~~~~~~~~~~~~----l~~----ad~viiv~~~~~-------------------------~~--~ 112 (206)
T 4dzz_A 68 GIRKDLADYDFAIVDGAGSLSVITSAA----VMV----SDLVIIPVTPSP-------------------------LD--F 112 (206)
T ss_dssp THHHHTTTSSEEEEECCSSSSHHHHHH----HHH----CSEEEEEECSCT-------------------------TT--H
T ss_pred HHHHhcCCCCEEEEECCCCCCHHHHHH----HHH----CCEEEEEecCCH-------------------------HH--H
Confidence 333445578999999875543222111 111 366777773211 11 2
Q ss_pred hhhchHHHHHhhhh-hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 94 GCIKGRGQFSPILL-ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 94 G~aNL~kHIeNi~k-vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
++..+.+.++.+.. .-+++. .+.+|++.. .. ++.+.++++++++|+.
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~---~~-----~~~~~~~~~l~~~~~~ 160 (206)
T 4dzz_A 113 SAAGSVVTVLEAQAYSRKVEA-RFLITRKIE---MA-----TMLNVLKESIKDTGVK 160 (206)
T ss_dssp HHHHHHHHHHTTSCGGGCCEE-EEEECSBCT---TE-----EEEHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCCCcE-EEEEeccCC---Cc-----hHHHHHHHHHHHcCCc
Confidence 23334444444332 124555 789999932 11 2346778888887754
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=56.62 E-value=6.8 Score=33.08 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc-
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI- 202 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~- 202 (570)
|.+.++ .|-..++++++|+++|+.+.+..-+ .....+...|-.++. +.-+..+.+ ....|.|.-|.+..
T Consensus 23 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~~~~--r~~~~~~s~p~~~~~ 93 (229)
T 2y7i_A 23 DADNKI-VGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAV------IAGMDMTPK--REQQVSFSQPYYEGL 93 (229)
T ss_dssp CTTSCE-ESHHHHHHHHHHHHTTCEEEEEECCGGGHHHHHHTTSCSEE------CSSCBCCHH--HHTTSEECSCSBCCC
T ss_pred CCCCCC-cceeHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCceEE------EecCccCHH--HhcceeeccccccCC
Confidence 444554 5777799999999999998876421 111122222322222 111122233 12456666666666
Q ss_pred cceecccccccccc-cccccCceeeEEeecc
Q psy8591 203 PSYVVSHSKEDVSR-DRISSGYTLGVVRTSG 232 (570)
Q Consensus 203 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 232 (570)
...++.+... +.. +.+ .|+++|+++-+.
T Consensus 94 ~~~~~~~~~~-~~~~~dL-~g~~v~~~~g~~ 122 (229)
T 2y7i_A 94 SAVVVTRKGA-YHTFADL-KGKKVGLENGTT 122 (229)
T ss_dssp CEEEEEETTS-CCSTGGG-TTCEEEEETTSH
T ss_pred cEEEEEeCCC-CCCHHHH-CCCEEEEecCCc
Confidence 6666666543 221 222 589999987544
No 24
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=55.86 E-value=8.1 Score=35.84 Aligned_cols=53 Identities=26% Similarity=0.182 Sum_probs=36.6
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc-eeeeCCCCceEeeeccCchhhhcccCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF-FEVTNPSGVVVSAVDFGSGELSNILPG 176 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~~~g~V~s~~~~Gg~eLa~~l~~ 176 (570)
=|||+ . -.|+-.| +.||+.|.++|+. +...=+||||+=--..-..+|+.++-.
T Consensus 12 RGINV-G-G~nkv~M-------------adLr~~l~~lGf~~V~TyI~SGNvvF~s~~~~~~l~~~ie~ 65 (183)
T 2hiy_A 12 RGINV-G-GKNKVVM-------------AELRQELTNLGLEKVESYINSGNIFFTSIDSKAQLVEKLET 65 (183)
T ss_dssp SSCSC-C--CCCCCH-------------HHHHHHHHHHTCEEEEEETTTTEEEEEECSCHHHHHHHHHH
T ss_pred cceec-C-CCCcccH-------------HHHHHHHHHcCCccceEEEecCCEEEecCCCHHHHHHHHHH
Confidence 36777 2 4577645 8899999999998 555568999876544433667766633
No 25
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=55.29 E-value=9.5 Score=38.95 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=33.8
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
....|+..+.. +|++-.++++||.+..+.+ +....++.+.+++++.++|+
T Consensus 158 qt~e~~~~~~~-~~~~~iIvviNK~Dl~~~~-~~~~~~i~~~~~~~l~~~g~ 207 (483)
T 3p26_A 158 QTKEHMLLASS-LGIHNLIIAMNKMDNVDWS-QQRFEEIKSKLLPYLVDIGF 207 (483)
T ss_dssp HHHHHHHHHHH-TTCCCEEEEEECGGGGTTC-HHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHH-cCCCcEEEEEECcCcccch-HHHHHHHHHHHHHHHHHcCC
Confidence 34567777666 7876448899999654422 33345556778888888887
No 26
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=55.13 E-value=3.6 Score=35.85 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=53.1
Q ss_pred CCCCcccccchhHHHHHHHHHhCCc-eeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLF-FEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
|.+.++ .|-..++++++|+++|+. +.+..-+ .........|-.++. +.-+..+.+ ....|.|.-|.+..
T Consensus 29 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~t~~--r~~~~~~s~p~~~~ 99 (257)
T 2q88_A 29 GADGKV-SGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAI------TAGLFMKPE--RCAAVAYSQPILCD 99 (257)
T ss_dssp CTTCCE-ESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHHHHTTSCSEE------CSCCBCCHH--HHTTSEECSCCCEE
T ss_pred CCCCCc-ccccHHHHHHHHHHcCCCeeeEEeCCHHHHHHHHHCCCcCEE------EecccCCHH--HHhccccccchhcC
Confidence 555555 677889999999999998 7776411 111112222322222 111222333 12456676676666
Q ss_pred cceeccccccc--cc-cccccc--CceeeEEeec
Q psy8591 203 PSYVVSHSKED--VS-RDRISS--GYTLGVVRTS 231 (570)
Q Consensus 203 ~~~~~~~~~~~--~~-~~~~~~--~~~~~~~~~~ 231 (570)
...++.+.... +. -+-+.. |+++|+++-+
T Consensus 100 ~~~~~~~~~~~~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 100 AEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp CEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTS
T ss_pred ceEEEEECCCccCCCCHHHHhccCCceEEEECCc
Confidence 66677665432 11 111211 9999998644
No 27
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=53.34 E-value=54 Score=28.84 Aligned_cols=35 Identities=9% Similarity=-0.109 Sum_probs=21.3
Q ss_pred hhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEe
Q psy8591 18 TLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTT 60 (570)
Q Consensus 18 ~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVAT 60 (570)
+..++||||-+.+-|.+..+...+ ..-|.+++|+.
T Consensus 108 l~~~yD~viiD~~~~~~~~~~~~~--------~~ad~vi~v~~ 142 (237)
T 1g3q_A 108 LKDKFDFILIDCPAGLQLDAMSAM--------LSGEEALLVTN 142 (237)
T ss_dssp TGGGCSEEEEECCSSSSHHHHHHH--------TTCSEEEEEEC
T ss_pred HHhcCCEEEEECCCCcCHHHHHHH--------HHCCeEEEEec
Confidence 446789999988765443222221 23478888874
No 28
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=53.20 E-value=15 Score=30.36 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=30.7
Q ss_pred hchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 96 IKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 96 aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.++...+..+....+.++ .+.+||.+. .+.++ ..+.++++|.+.|+.+
T Consensus 133 ~~~~~~~~~i~~~~~~pi-ilv~NK~D~--~~~~~----~~~~~~~~~~~~~~~~ 180 (208)
T 3clv_A 133 DRAKTWVNQLKISSNYII-ILVANKIDK--NKFQV----DILEVQKYAQDNNLLF 180 (208)
T ss_dssp HHHHHHHHHHHHHSCCEE-EEEEECTTC--C-CCS----CHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhhCCCcE-EEEEECCCc--ccccC----CHHHHHHHHHHcCCcE
Confidence 355555666665456777 889999951 12222 2367888999988753
No 29
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=52.25 E-value=7 Score=33.38 Aligned_cols=99 Identities=10% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 124 FDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 124 ~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
.|.+.++ .|-..++++++|+++|+.+.+..-+ .....+...|- ++..+.-+..+.+ ....|.|.-|.+..
T Consensus 20 ~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~------~D~~~~~~~~t~~--r~~~~~~s~p~~~~ 90 (239)
T 1lst_A 20 KDAKGEF-IGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKK------IDAIISSLSITDK--RQQEIAFSDKLYAA 90 (239)
T ss_dssp ECTTCCE-ESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHTTS------CSEECSSCBCCHH--HHHHCEECSCSBCC
T ss_pred ECCCCCE-eeEHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHhCCC------CCEEEECcCcCHH--HhhceeecccceeC
Confidence 3555555 5777799999999999998887411 01111112222 2221111222333 22456666666666
Q ss_pred cceeccccccccc--ccccccCceeeEEeecc
Q psy8591 203 PSYVVSHSKEDVS--RDRISSGYTLGVVRTSG 232 (570)
Q Consensus 203 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 232 (570)
...++.+...... -+.+ .|+++|+++-+.
T Consensus 91 ~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~ 121 (239)
T 1lst_A 91 DSRLIAAKGSPIQPTLESL-KGKHVGVLQGST 121 (239)
T ss_dssp CEEEEEETTCCCCSSHHHH-TTCEEEEETTSH
T ss_pred ceEEEEeCCCCCCCCHHHh-CCCEEEEEcCcc
Confidence 6667766543332 1112 589999987554
No 30
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=51.23 E-value=11 Score=37.55 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=32.5
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC-ceeeeCCCCceEeeeccCchhhhccc
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL-FFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv-~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
..|+..+.. +|+.-+.+++||.+..+.++ + ....+.+++++...+. .+.+.. +-|+-+.|=.+|-+.|
T Consensus 124 ~e~l~~~~~-l~~~~iivv~NK~Dl~~~~~-~--~~~~~~i~~~l~~~~~~~~~~i~----vSA~~g~gi~~L~~~l 192 (408)
T 1s0u_A 124 KEHLMALEI-LGIDKIIIVQNKIDLVDEKQ-A--EENYEQIKEFVKGTIAENAPIIP----ISAHHEANIDVLLKAI 192 (408)
T ss_dssp HHHHHHHHH-TTCCCEEEEEECTTSSCTTT-T--TTHHHHHHHHHTTSTTTTCCEEE----C------CHHHHHHHH
T ss_pred HHHHHHHHH-cCCCeEEEEEEccCCCCHHH-H--HHHHHHHHHHHhhcCCCCCeEEE----eeCCCCCCHHHHHHHH
Confidence 345554444 67654489999996654432 1 1223556666655322 233333 2234455545565555
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=48.63 E-value=20 Score=29.53 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=37.0
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++.+.++.+.+. -++++ .+.+||.+..+. .++ ..+.++++|.+.|+.+--+ -|+-+.|=.+|-+.|
T Consensus 102 ~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~------Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 102 RAKKWVQELQAQGNPNMVM-ALAGNKSDLLDA-RKV----TAEDAQTYAQENGLFFMET------SAKTATNVKEIFYEI 169 (181)
T ss_dssp HHHHHHHHHHHHSCTTCEE-EEEEECTTCTTT-CCS----CHHHHHHHHHHTTCEEEEC------CSSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcE-EEEEECCccccc-ccC----CHHHHHHHHHHcCCEEEEE------ECCCCCCHHHHHHHH
Confidence 444555555442 25666 788999955332 223 2367888999988753222 123444545555555
No 32
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=48.19 E-value=48 Score=29.35 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.1
Q ss_pred ccchhHHHHHHHHHhCCce
Q psy8591 132 VGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~f 150 (570)
..++.+.++++|++.|+.|
T Consensus 175 ~~~~~~~~~~~a~~~~v~~ 193 (232)
T 3dci_A 175 SMRLAPLYRKLAAELGHHF 193 (232)
T ss_dssp HTTHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHhCCeE
Confidence 4678899999999998774
No 33
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=48.12 E-value=3.7 Score=40.63 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=67.2
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEEE-----EEeehhhhhcCCCCCCCCCCCCCCcccc------CC
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVL-----VTTVRALKMHGGGPSVVSGQPLKPEYTE------VS 87 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVL-----VATVRALK~HGG~~~v~~G~PL~~el~e------EN 87 (570)
...+||+||-..|..|. +++|++ +||..|+. +=|+ +++.+.|++.... .|-.+|+.+.+ .|
T Consensus 171 ~aGAdf~iTQ~ffD~~~-~~~f~~-~~r~~Gi~--vPIi~GImPi~s~~~~~~~~~~----~Gv~iP~~l~~~l~~~~~d 242 (310)
T 3apt_A 171 EAGLDFAITQLFFNNAH-YFGFLE-RARRAGIG--IPILPGIMPVTSYRQLRRFTEV----CGASIPGPLLAKLERHQDD 242 (310)
T ss_dssp HHHCSEEEECCCSCHHH-HHHHHH-HHHHTTCC--SCEECEECCCCCTTHHHHHHHT----SCCCCCHHHHHHHHHSTTC
T ss_pred HcCCCEEEecccCCHHH-HHHHHH-HHHHcCCC--CeEEEEecccCCHHHHHHHHHc----CCCCCCHHHHHHHHhccCC
Confidence 45678999999997765 666777 89999984 2222 4566777555322 35555654321 23
Q ss_pred hHHH-HhhhhchHHHHHhhhhhcCCC-cceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 88 TSTE-HQGCIKGRGQFSPILLICGLQ-KHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 88 ldaL-ekG~aNL~kHIeNi~kvfGVn-vfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+++ +.|.+-....|+.+.. .|++ +|.-.+|+. +.+++.|..+|+.
T Consensus 243 ~~~~~~~gi~~a~e~~~~L~~-~gv~GiH~yt~n~~---------------~~~~~I~~~l~~~ 290 (310)
T 3apt_A 243 PKAVLEIGVEHAVRQVAELLE-AGVEGVHFYTLNKS---------------PATRMVLERLGLR 290 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCSEEEEECCSSC---------------CHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCCeEEEeCCCCH---------------HHHHHHHHHcCCC
Confidence 3333 5677766667777776 4543 333445555 5678889999884
No 34
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=47.83 E-value=85 Score=29.24 Aligned_cols=45 Identities=4% Similarity=-0.044 Sum_probs=27.4
Q ss_pred hhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 94 GCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 94 G~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
++.++.+.++.+....+++...+.+|++. .. ..++++++.+|+.+
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~gvV~N~~~----~~--------~~~~~~~~~~g~~v 240 (307)
T 3end_A 196 AMNRIIAAVQAKSKNYKVRLAGCVANRSR----AT--------DEVDRFCKETNFRR 240 (307)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCS----CC--------HHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHhhhcCCCceEEEEEecCC----cH--------HHHHHHHHHcCCCc
Confidence 33444455554433366776678999993 12 35677888888653
No 35
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=46.31 E-value=3.8 Score=35.09 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=54.9
Q ss_pred CCCCcccccchhHHHHHHHHHhC-CceeeeCCCC-ceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVG-LFFEVTNPSG-VVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lG-v~fav~~~~g-~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
|.+.++ .|-..++++.+|+++| +.+.+..-+. ..+.+...|-.++ .+.-+..+.+ ....|.|.-|.+..
T Consensus 24 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~------~~~~~~~~~~--r~~~~~~s~p~~~~ 94 (246)
T 4eq9_A 24 EENGEL-TGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAGLDADRYNM------AVNNLSYTKE--RAEKYLYAAPIAQN 94 (246)
T ss_dssp EETTEE-ESHHHHHHHHHHTTCSSEEEEEEECCHHHHHHHHHTTSCSE------ECSSCCCCHH--HHHHEEECCCCEEC
T ss_pred cCCCCC-cccHHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhCCCcCE------EecccccChh--hhhceeeccceecC
Confidence 444444 5777899999999999 9888774210 0111112222222 2211223333 23567777777777
Q ss_pred cceecccc-cccccccccccCceeeEEeecc
Q psy8591 203 PSYVVSHS-KEDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
+..++.+. ...+..-.=-.|+++|+++-+.
T Consensus 95 ~~~~~~~~~~~~i~~~~dL~g~~i~~~~g~~ 125 (246)
T 4eq9_A 95 PNVLVVKKDDSSIKSLDDIGGKSTEVVQATT 125 (246)
T ss_dssp CEEEEEETTCCSCSSGGGCTTCEEEECTTCH
T ss_pred ceEEEEECCCCCCCCHHHhCCCEEEEecCcc
Confidence 77777765 3333222222589999987554
No 36
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=45.80 E-value=12 Score=32.55 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=54.7
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCch-hhhc-ccCcchhccccccccCCCCccccccc
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSG-ELSN-ILPGFLVESRQTDESHDMGHFEYGFP 198 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~-eLa~-~l~~f~~~~r~~des~~~~~Fe~~y~ 198 (570)
|...|.+.++ .|-..++++++|+.+|+.+.+..-+ +.... .|.+ +++..+.-+..+.+ ....|.|.-|
T Consensus 18 ~~~~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~-------~~~~~~~l~~g~~D~~~~~~~~t~~--r~~~~~fs~p 87 (232)
T 3i6v_A 18 YNFINDAGEV-DGFERELGDELCKRAGLTCEWVKND-------WDSIIPNLVSGNYDTIIAGMSITDE--RDEVIDFTQN 87 (232)
T ss_dssp TEEECTTSCE-ESHHHHHHHHHHHHHTCCEEEEECC-------GGGHHHHHHTTSCSEECSSCBCCHH--HHTTSEEEEE
T ss_pred eeEECCCCCE-eeehHHHHHHHHHHcCCceEEEECC-------HHHHHHHHHCCCCCEEEeCCcCCHH--HHhhcCcccc
Confidence 3334556665 6778899999999999999887522 11111 1221 22221222333444 2356777777
Q ss_pred cccccceecccccccccccccccCceeeEEeec
Q psy8591 199 SMLIPSYVVSHSKEDVSRDRISSGYTLGVVRTS 231 (570)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (570)
-+.....++.+... -+.+ .| ++|+++-+
T Consensus 88 ~~~~~~~~~~~~~~---~~dL-~g-~igv~~g~ 115 (232)
T 3i6v_A 88 YIPPTASSYVATSD---GADL-SG-IVAAQTAT 115 (232)
T ss_dssp EECCCEEEEEESST---TCCT-TS-EEEEETTS
T ss_pred cccCCeEEEEECCC---hHHh-CC-CEEEecCc
Confidence 66666666655432 1122 47 89988754
No 37
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=45.71 E-value=7.7 Score=26.66 Aligned_cols=16 Identities=38% Similarity=1.057 Sum_probs=14.7
Q ss_pred hhhhhHHHHhhhHHhh
Q psy8591 3 AWRNLFLKISRNFYDT 18 (570)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (570)
||+|++-.+.+.|||-
T Consensus 2 awknfwsslrkgfydg 17 (26)
T 2khf_A 2 AWKNFWSSLRKGFYDG 17 (26)
T ss_dssp CHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhhcccc
Confidence 8999999999999983
No 38
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=45.70 E-value=19 Score=29.90 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=32.4
Q ss_pred HhhhhchHHHHHhhhh-hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 92 HQGCIKGRGQFSPILL-ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 92 ekG~aNL~kHIeNi~k-vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
..-+.+|.+.+..++. ..++++ .+..||.+..+ ++ -.+.++++|.+.|+
T Consensus 116 ~~s~~~l~~~l~~~~~~~~~~pi-ilv~NK~Dl~~---~~----~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 116 AESMRNMRENLAEYGLTLDDVPI-VIQVNKRDLPD---AL----PVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCCTTSSCE-EEEEECTTSTT---CC----CHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHhhccccCCCCE-EEEEEchhccc---cc----CHHHHHHHHHhcCC
Confidence 3445667777776632 357788 78899995422 22 22678899999887
No 39
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=44.56 E-value=9.6 Score=33.73 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCCCCcccccchhHHHHHHHHHhCCceeeeCCCC-ceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 124 FDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSG-VVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 124 ~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g-~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
.|.+.++ .|-..++++++|+++|+.+.+..-+. ....+...|-.++ .+.-+..+.+ ....|.|.-|.+..
T Consensus 45 ~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~------~~~~~~~t~~--r~~~~~fs~p~~~~ 115 (259)
T 4dz1_A 45 KSADGKL-QGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADV------AFSGISITDK--RKKVIDFSEPYYIN 115 (259)
T ss_dssp ECTTCCE-ESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHTSSSE------EEEEEECCHH--HHTTEEECCCSEEE
T ss_pred ECCCCCE-EEeHHHHHHHHHHHhCCeEEEEEcCHHHHHHHHhCCCCCE------EEECCcCCHH--HhhccccccchhhC
Confidence 3545554 56677999999999999988875210 0111122222222 1221233444 23556666666666
Q ss_pred cceeccccccccccccc--ccCceeeEEeecch-hhhhhh
Q psy8591 203 PSYVVSHSKEDVSRDRI--SSGYTLGVVRTSGT-RMLNAL 239 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~ 239 (570)
...++.+...+..-..+ -.|+++|+++-+.. .+|..+
T Consensus 116 ~~~~~~~~~~~~~i~~~~dL~g~~v~v~~g~~~~~~l~~~ 155 (259)
T 4dz1_A 116 SFYLVSMANHKITLNNLNELNKYSIGYPRGMAYSDLIKND 155 (259)
T ss_dssp EEEEEEETTSCCCCCSGGGGGGSCEEEETTSTHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCCHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 65565544332111111 15899999875543 334443
No 40
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=44.01 E-value=6.2 Score=46.65 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=31.0
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
...|+..+.. .|++.+++++||.+..+ ++++ +..+.+.+++++.++|+
T Consensus 400 TrEhL~ll~~-lgIP~IIVVINKiDLv~-d~e~-le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 400 TREHILLGRQ-VGVPYIIVFLNKCDMVD-DEEL-LELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHHHH-HTCSCEEEEEECCTTCC-CHHH-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHH-cCCCeEEEEEeeccccc-chhh-HHHHHHHHHHHHHhccc
Confidence 3456655555 78995588999996543 2221 22334667888888886
No 41
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=43.53 E-value=8.4 Score=38.26 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=31.6
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
...|+..+.. .|++.+++++||.+..+ +++. +..+.+.+++++.++|+
T Consensus 107 t~e~l~~~~~-~~vp~iivviNK~Dl~~-~~~~-~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 107 TREHLLLARQ-IGVEHVVVYVNKADAVQ-DSEM-VELVELEIRELLTEFGY 154 (397)
T ss_dssp HHHHHHHHHH-TTCCCEEEEEECGGGCS-CHHH-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHH-cCCCeEEEEEECcccCC-CHHH-HHHHHHHHHHHHHHcCC
Confidence 4566755555 78996578999996543 2221 23345677888888886
No 42
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=43.02 E-value=24 Score=28.11 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=24.2
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.++++ .+.+||.+..+... ..+.++++|+++|+.
T Consensus 107 ~~~p~-iiv~nK~Dl~~~~~------~~~~~~~~~~~~~~~ 140 (166)
T 2ce2_X 107 DDVPM-VLVGNKSDLAARTV------ESRQAQDLARSYGIP 140 (166)
T ss_dssp SCCCE-EEEEECTTCSCCCS------CHHHHHHHHHHHTCC
T ss_pred CCCcE-EEEEEchhhhhccc------CHHHHHHHHHHcCCe
Confidence 37888 88999985433222 237788999999975
No 43
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=42.54 E-value=56 Score=29.40 Aligned_cols=86 Identities=7% Similarity=-0.111 Sum_probs=46.0
Q ss_pred hhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhc
Q psy8591 18 TLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIK 97 (570)
Q Consensus 18 ~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aN 97 (570)
+..++||||-+.+-|.+..+...+ . .-|.+++|++... ..+ .++..
T Consensus 107 l~~~yD~viiD~~~~~~~~~~~~~----~----~ad~vi~v~~~~~-------------------------~~~-~~~~~ 152 (263)
T 1hyq_A 107 IMESTDILLLDAPAGLERSAVIAI----A----AAQELLLVVNPEI-------------------------SSI-TDGLK 152 (263)
T ss_dssp HHHTCSEEEEECCSSSSHHHHHHH----H----HSSEEEEEECSSH-------------------------HHH-HHHHH
T ss_pred HHhhCCEEEEeCCCCCChHHHHHH----H----HCCEEEEEeCCCh-------------------------hHH-HHHHH
Confidence 445789999998755442222111 1 2467888873221 111 12222
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
+.+.+ .. .|++...+.+|++.. .... ..++++++.+|+.+
T Consensus 153 ~~~~l---~~-~~~~~~~vv~N~~~~---~~~~------~~~~~~~~~~~~~~ 192 (263)
T 1hyq_A 153 TKIVA---ER-LGTKVLGVVVNRITT---LGIE------MAKNEIEAILEAKV 192 (263)
T ss_dssp HHHHH---HH-HTCEEEEEEEEEECT---TTHH------HHHHHHHHHTTSCE
T ss_pred HHHHH---Hh-cCCCeeEEEEccCCc---cccc------chHHHHHHHhCCCe
Confidence 32333 33 366666789999932 2211 45677777778653
No 44
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=42.22 E-value=20 Score=30.13 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.++++ .+.+||.+..+ .++ ..+.++++|.++|+.
T Consensus 125 ~~~p~-ilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 125 DDVPM-VLVGNKCDLPT--RTV----DTKQAHELAKSYGIP 158 (190)
T ss_dssp SCCCE-EEEEECTTCSC--CCS----CHHHHHHHHHHHTCC
T ss_pred CCCeE-EEEEECCcCCc--ccC----CHHHHHHHHHHcCCe
Confidence 47888 88999995533 222 237788999999975
No 45
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=42.01 E-value=17 Score=36.97 Aligned_cols=48 Identities=25% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHhhhHHhhh--------ccccEEEccCC-----------------CCCCCcccccccc---------------------
Q psy8591 10 KISRNFYDTL--------LHIAYATQPNR-----------------EYSVSGMEKFFNI--------------------- 43 (570)
Q Consensus 10 ~~~~~~~~~~--------l~~DYVVTEAG-----------------FGADLGaEKF~DI--------------------- 43 (570)
.|-+..++.| ...|++++|.| |..++|-|.|+.|
T Consensus 142 eIk~~I~~~a~~pvd~~~~~~Dv~IiEiGGTVGDIES~PFlEAiRQ~~~~~g~~n~~~iHvtlVP~i~~~gE~KTKPTQh 221 (294)
T 2c5m_A 142 AIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQN 221 (294)
T ss_dssp HHHHHHHHHTTCC------CCSEEEEEECSCTTCSTTHHHHHHHHTTTTTSCTTTEEEEEEEECCCCTTTCSCCCHHHHH
T ss_pred HHHHHHHHHhcCCccccCCCCCEEEEEeCCcchhhcccHHHHHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCCcHH
Confidence 4667777777 47899999999 5678899998887
Q ss_pred ---ccccCCCCCCeEEE
Q psy8591 44 ---KCRTSGKIPDAVVL 57 (570)
Q Consensus 44 ---KCR~sGL~PdavVL 57 (570)
.-|..|+.||.+|.
T Consensus 222 SVk~Lr~~Gi~PDiivc 238 (294)
T 2c5m_A 222 SVRELRGLGLSPDLVVC 238 (294)
T ss_dssp HHHHHHHTTCCCSEEEE
T ss_pred HHHHHHHcCCCCCEEEE
Confidence 24889999998775
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=40.62 E-value=29 Score=28.44 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=21.5
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH-hCCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF-VGLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~-lGv~ 149 (570)
.++++ .+.+||.+..+ .++ ..+.++++|.+ .++.
T Consensus 115 ~~~p~-i~v~nK~Dl~~--~~~----~~~~~~~~~~~~~~~~ 149 (177)
T 1wms_A 115 ESFPF-VILGNKIDISE--RQV----STEEAQAWCRDNGDYP 149 (177)
T ss_dssp TTSCE-EEEEECTTCSS--CSS----CHHHHHHHHHHTTCCC
T ss_pred CCCcE-EEEEECCcccc--ccc----CHHHHHHHHHhcCCce
Confidence 56787 78999995532 222 23677888884 4443
No 47
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=40.57 E-value=49 Score=27.82 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=14.7
Q ss_pred ccchhHHHHHHHHHhCCc
Q psy8591 132 VGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~ 149 (570)
+.++.+.++++|++.|+.
T Consensus 153 ~~~~n~~~~~~a~~~~~~ 170 (216)
T 3rjt_A 153 VDAYIEAMRDVAASEHVP 170 (216)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCe
Confidence 466788999999998864
No 48
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=40.13 E-value=29 Score=29.10 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce-eeeCCCCceEeeeccCchhhhccc
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF-EVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f-av~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++++ .+.+||.+..+ .++ ..+..+++|..+|+.+ +++ |+-+.|=.+|-+.|
T Consensus 114 ~~pi-ilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~~~~~~S-------a~~~~gi~~l~~~l 165 (199)
T 2gf0_A 114 DIPV-MLVGNKCDETQ--REV----DTREAQAVAQEWKCAFMETS-------AKMNYNVKELFQEL 165 (199)
T ss_dssp GSCE-EEEEECTTCSS--CSS----CHHHHHHHHHHHTCEEEECB-------TTTTBSHHHHHHHH
T ss_pred CCCE-EEEEECccCCc--ccc----CHHHHHHHHHHhCCeEEEEe-------cCCCCCHHHHHHHH
Confidence 6787 88999996543 222 2367788899888753 332 23445555555555
No 49
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=39.58 E-value=10 Score=33.50 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIP 203 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~ 203 (570)
|.+.++ .|=-.++++++|+++|+.+.+..-. .........|..+ ..+.-+..++| -...|.|--|-+..+
T Consensus 32 d~~g~~-~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~l~~g~~d------~~~~~~~~t~e--R~~~~~fs~py~~~~ 102 (243)
T 4h5g_A 32 DGKNQV-VGADIDMAQAIADELGVKLEILSMSFDNVLTSLQTGKAD------LAVAGISATDE--RKEVFDFSIPYYENK 102 (243)
T ss_dssp TTEEEE-ESHHHHHHHHHHHHHTSEEEEEECCGGGHHHHHHTTSCS------EECSSCBCCHH--HHTTEEECSCSBCCC
T ss_pred CCCCcE-EEeHHHHHHHHHHHhCCceEEecccHHHHHHHHHcCCCC------cccccccCChh--HccEEEccCccccCc
Confidence 455555 5666799999999999999887411 0011111222222 11122334555 224566655655555
Q ss_pred ceeccccccc--ccccccccCceeeEEeec
Q psy8591 204 SYVVSHSKED--VSRDRISSGYTLGVVRTS 231 (570)
Q Consensus 204 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 231 (570)
..++.+.... ...-.--.|+++|+++-+
T Consensus 103 ~~~~v~~~~~~~~~~~~dl~g~~i~v~~g~ 132 (243)
T 4h5g_A 103 ISFLVHKADVEKYKDLTSLESANIAAQKGT 132 (243)
T ss_dssp EEEEEEGGGTTTCCSHHHHHTSEEEEETTS
T ss_pred ccccccccccccccccccCCCCEEEecCCc
Confidence 5444433221 111112358899998743
No 50
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=39.01 E-value=27 Score=29.17 Aligned_cols=101 Identities=3% Similarity=-0.091 Sum_probs=50.0
Q ss_pred ccEEEccCCCCCCC---ccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch
Q psy8591 22 IAYATQPNREYSVS---GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG 98 (570)
Q Consensus 22 ~DYVVTEAGFGADL---GaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL 98 (570)
.++-|.-.|++.+. +.+++-.+ ....+||.|+|-.=.--+ +..-+.+..++ ||
T Consensus 37 ~~~~v~n~g~~G~~~~~~~~~~~~~---~~~~~pd~vvi~~G~ND~------------------~~~~~~~~~~~---~~ 92 (185)
T 3hp4_A 37 SDIVLINASISGETSGGALRRLDAL---LEQYEPTHVLIELGANDG------------------LRGFPVKKMQT---NL 92 (185)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHH---HHHHCCSEEEEECCHHHH------------------HTTCCHHHHHH---HH
T ss_pred CcEEEEECCcCCccHHHHHHHHHHH---HhhcCCCEEEEEeecccC------------------CCCcCHHHHHH---HH
Confidence 45777666765543 22333222 112489988875522211 11123344444 55
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.+-|+.+++ -|..+..+.+..- ..-..+ ...++.+.++++|++.|+.+
T Consensus 93 ~~~i~~~~~-~~~~vvl~~~~~p--~~~~~~-~~~~~~~~~~~~a~~~~~~~ 140 (185)
T 3hp4_A 93 TALVKKSQA-ANAMTALMEIYIP--PNYGPR-YSKMFTSSFTQISEDTNAHL 140 (185)
T ss_dssp HHHHHHHHH-TTCEEEEECCCCC--STTCHH-HHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHH-cCCeEEEEeCCCC--CcccHH-HHHHHHHHHHHHHHHcCCEE
Confidence 555666665 3444422222111 001111 23567899999999988764
No 51
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=38.98 E-value=15 Score=31.04 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCCCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccc
Q psy8591 123 MFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSML 201 (570)
Q Consensus 123 ~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~ 201 (570)
..|.+.+. .|-..++++++|+++|+.+.+...+ ...+.+...|-.++. .-+..+.+ ....|.|.-|.+.
T Consensus 26 ~~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~-------~~~~~~~~--r~~~~~~s~p~~~ 95 (234)
T 3h7m_A 26 FIDQNGKP-AGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVL-------QGISWSEK--RARQIDFTPPHTI 95 (234)
T ss_dssp EECTTSCE-ESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEE-------EEEECCHH--HHTTEEEEEEEEE
T ss_pred EECCCCCE-eeeEHHHHHHHHHHcCCceEEEeCCHHHHHHHHhCCCeeEE-------EeccCCHh--HHhhcCCCccccc
Confidence 34556665 6778899999999999998876311 112222333433331 11222333 2345666666666
Q ss_pred ccceeccccccc-ccccccccCceeeEEeec
Q psy8591 202 IPSYVVSHSKED-VSRDRISSGYTLGVVRTS 231 (570)
Q Consensus 202 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (570)
....++.+.... +..-.--.|+++|+++-+
T Consensus 96 ~~~~~~~~~~~~~~~~~~dL~g~~i~~~~g~ 126 (234)
T 3h7m_A 96 VYHAIFARRDSPPAAGLEDLRGRKVALHRDG 126 (234)
T ss_dssp EEEEEEEESSSCCCSSGGGGTTSCEEEETTS
T ss_pred cceEEEEECCCCCCCCHHHhCCCEEEEEeCc
Confidence 666666655433 222112268999998754
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=38.91 E-value=29 Score=28.26 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=38.9
Q ss_pred hhchHHHHHhhhhh---cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhh
Q psy8591 95 CIKGRGQFSPILLI---CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 95 ~aNL~kHIeNi~kv---fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa 171 (570)
+.++...+..+.+. .++++ .+..||.+..+ +.++ ..+..+++|+..|+.+ .+ +-|+-+.|=.+|-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~-~~~~----~~~~~~~~~~~~~~~~--~~----~Sa~~~~~v~~l~ 158 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLAR-SREV----SLEEGRHLAGTLSCKH--IE----TSAALHHNTRELF 158 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCGG-GCCS----CHHHHHHHHHHTTCEE--EE----CBTTTTBSHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCE-EEEeeCcchhh-cccC----CHHHHHHHHHHcCCcE--EE----ecCccCCCHHHHH
Confidence 34455555555442 27888 78999985432 2233 2367788999998853 22 2234455555555
Q ss_pred ccc
Q psy8591 172 NIL 174 (570)
Q Consensus 172 ~~l 174 (570)
+.|
T Consensus 159 ~~l 161 (169)
T 3q85_A 159 EGA 161 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 53
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=38.90 E-value=42 Score=27.35 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=11.9
Q ss_pred eeeeCCCCceEeeeccCchhhhccc
Q psy8591 150 FEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 150 fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
+-+.++.|+|+.... ++.+|.+.|
T Consensus 120 ~~lid~~G~i~~~~~-~~~~l~~~l 143 (150)
T 3fw2_A 120 NILLSSDGKILAKNL-RGEELKKKI 143 (150)
T ss_dssp EEEECTTSBEEEESC-CHHHHHHHH
T ss_pred EEEECCCCEEEEccC-CHHHHHHHH
Confidence 345555565555443 444454444
No 54
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=38.46 E-value=26 Score=31.01 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCceeeeCCCCceEeeec
Q psy8591 136 SKHYRQLCLFVGLFFEVTNPSGVVVSAVD 164 (570)
Q Consensus 136 ~~~lR~~C~~lGv~fav~~~~g~V~s~~~ 164 (570)
.++|+++++++|+.+.+ +.-||||+..+
T Consensus 33 ~~~l~~~l~~~G~~v~~-D~~GNlia~~~ 60 (354)
T 2wzn_A 33 RDIVVDVLKEVADEVKV-DKLGNVIAHFK 60 (354)
T ss_dssp HHHHHHHHHTTSSEEEE-CTTCCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEE-eCCCeEEEEEC
Confidence 57899999999998776 55799998765
No 55
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=38.18 E-value=9.4 Score=37.84 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=31.6
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
...+|+..+.. +|++.+++++||.+..+ +++. +..+.+.+++++.++|+
T Consensus 115 qt~~~l~~~~~-~~ip~iivviNK~Dl~~-~~~~-~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 115 QTREHILLARQ-VGVPYIVVFMNKVDMVD-DPEL-LDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHHHH-TTCCCEEEEEECGGGCC-CHHH-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH-cCCCEEEEEEECccccC-cHHH-HHHHHHHHHHHHHHhcc
Confidence 34567766666 78995488999995543 2221 22334567888888886
No 56
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=37.61 E-value=12 Score=33.52 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=50.7
Q ss_pred CcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccccee
Q psy8591 128 QPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSYV 206 (570)
Q Consensus 128 ~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~~ 206 (570)
.++ .|-..++++++|+++|+.+.+..-+ ...+.+...| .++..+.-+..+.+ ....|.|.-|.+.....+
T Consensus 44 g~~-~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~l~~G------~~D~~~~~~~~t~~--r~~~~~fs~p~~~~~~~l 114 (271)
T 2iee_A 44 DKL-TGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSG------QVDAAANDIDVTKD--REEKFAFSTPYKYSYGTA 114 (271)
T ss_dssp CEE-ECHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHT------SSSEECSSCBCCHH--HHTTEEECCCSEEEEEEE
T ss_pred CCc-eeeHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC------CcCEEEeCCcCChh--hccceEEeecceeCCeEE
Confidence 454 5777799999999999998877411 1111112222 22222211222333 224566766666666666
Q ss_pred cccccc--cccccccccCceeeEEeec
Q psy8591 207 VSHSKE--DVSRDRISSGYTLGVVRTS 231 (570)
Q Consensus 207 ~~~~~~--~~~~~~~~~~~~~~~~~~~ 231 (570)
+.+... .+..-.=-.|+++|+++-+
T Consensus 115 ~~~~~~~~~i~~~~dL~g~~i~v~~g~ 141 (271)
T 2iee_A 115 IVRKDDLSGIKTLKDLKGKKAAGAATT 141 (271)
T ss_dssp EECTTTGGGCSSGGGGTTCEEESCTTS
T ss_pred EEECCCCCCCCCHHHhCCCEEEEeCCc
Confidence 666443 1221111258999987644
No 57
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=37.58 E-value=49 Score=27.98 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=49.5
Q ss_pred EEEccCCCCCCC---ccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHH
Q psy8591 24 YATQPNREYSVS---GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRG 100 (570)
Q Consensus 24 YVVTEAGFGADL---GaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~k 100 (570)
+.|.-.|+|-+. +..+|-... ...+||.|||-. |...... .-+.+..++ ||.+
T Consensus 35 ~~v~n~g~~G~~~~~~~~~~~~~~---~~~~pd~Vii~~---------G~ND~~~---------~~~~~~~~~---~l~~ 90 (190)
T 1ivn_A 35 TSVVNASISGDTSQQGLARLPALL---KQHQPRWVLVEL---------GGNDGLR---------GFQPQQTEQ---TLRQ 90 (190)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHH---HHHCCSEEEEEC---------CTTTTSS---------SCCHHHHHH---HHHH
T ss_pred cEEEecCCCCchHHHHHHHHHHHH---HhcCCCEEEEEe---------ecccccc---------CCCHHHHHH---HHHH
Confidence 666667775542 223332221 124699887743 4442211 123344444 5555
Q ss_pred HHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 101 QFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 101 HIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
-|+.+++ -|..+ +.++-+-..+...+ ...++.+.++++|++.|+.|
T Consensus 91 li~~~~~-~~~~v--il~~~~~p~~~~~~-~~~~~n~~~~~~a~~~~v~~ 136 (190)
T 1ivn_A 91 ILQDVKA-ANAEP--LLMQIRLPANYGRR-YNEAFSAIYPKLAKEFDVPL 136 (190)
T ss_dssp HHHHHHH-TTCEE--EEECCCCCGGGCHH-HHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHH-cCCCE--EEEeccCCcchhHH-HHHHHHHHHHHHHHHcCCeE
Confidence 5666665 34333 33332101111111 24667889999999987654
No 58
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=37.57 E-value=1.1e+02 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=14.6
Q ss_pred ccchhHHHHHHHHHhCCce
Q psy8591 132 VGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~f 150 (570)
+..+.+.++++|.+.|+.+
T Consensus 128 ~~~~n~~~~~~a~~~~~~~ 146 (195)
T 1yzf_A 128 IKELVKVAQEVGAAHNLPV 146 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHhCCeE
Confidence 4567788999999987654
No 59
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=37.05 E-value=8.2 Score=32.56 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=49.4
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCC-C-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNP-S-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLI 202 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~-~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~ 202 (570)
|.+.++ .|-..++++.+|+++|+.+.+..- + .....+...|-.+++ +.-+..+.+......|.|..|.+..
T Consensus 22 ~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~~~~r~~~~~~~~s~p~~~~ 94 (233)
T 1ii5_A 22 GKNAAF-TGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDIL------IGPISVTPERAAIEGITFTQPYFSS 94 (233)
T ss_dssp ----CE-ESHHHHHHHHHHHHHTCCEEEEECSCHHHHHHHHHTTSCSEE------EEEEECCHHHHTSTTEEECCCCEEE
T ss_pred CCCCCE-EEEeHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHCCCcCEE------EeeeecCccccccceeEEccceeec
Confidence 444554 566779999999999999988752 1 111122233333332 1111222221101456666565555
Q ss_pred cceecccccc--cccccccccCceeeEEeecc
Q psy8591 203 PSYVVSHSKE--DVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 203 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 232 (570)
...++.+... .+..-.=-.|+++|+++-+.
T Consensus 95 ~~~~~~~~~~~~~i~~~~dL~g~~v~~~~g~~ 126 (233)
T 1ii5_A 95 GIGLLIPGTATPLFRSVGDLKNKEVAVVRDTT 126 (233)
T ss_dssp EEEEEEEGGGTTTCSSGGGGTTCEEEEETTSH
T ss_pred CeEEEEECCCCCCCCCHHHhCCCeEEEECCcc
Confidence 5555554433 22111112488999887543
No 60
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=37.00 E-value=17 Score=31.39 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=49.6
Q ss_pred CCCCCcccccchhHHHHHHHHHhCCceeeeCCCC-ceEeeeccCchhhhcccCcchhccccccccCCCCccccccccc--
Q psy8591 124 FDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSG-VVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSM-- 200 (570)
Q Consensus 124 ~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g-~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~-- 200 (570)
.|.+.++ .|-..++++.+++++|+.+.+..-+. ....+...|- ++-.+.-+..+.+ ....|.| -|.+
T Consensus 47 ~~~~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~------~D~~~~~~~~~~~--r~~~~~~-~p~~~~ 116 (268)
T 3qax_A 47 VDAQGEV-VGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHR------IDAILAGMSITPS--RQKEIAL-LPYYGD 116 (268)
T ss_dssp ECTTSCE-ESHHHHHHHHHHHHHTCEEEEEECCGGGHHHHHHHTS------SSEECSCCBCCHH--HHTTSEE-EEEECC
T ss_pred ECCCCCE-EEEEHHHHHHHHHHhCCeEEEEecCHHHHHHHHhCCC------ccEEeecCccCHh--Hhcceee-ecceec
Confidence 3445554 56677999999999999988875211 0111111222 2222111233333 2245555 5555
Q ss_pred cccceeccccc-ccccccccccCceeeEEeecc
Q psy8591 201 LIPSYVVSHSK-EDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 201 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (570)
.....++.+.. ..+..-.--.|+++|+++-+.
T Consensus 117 ~~~~~~~~~~~~~~i~~~~dL~g~~i~~~~g~~ 149 (268)
T 3qax_A 117 EVQELMVVSKRSLETPVLPLTQYSSVAVQTGTY 149 (268)
T ss_dssp CBCEEEEEEETTSCSCCCCGGGSSCEEEETTSH
T ss_pred ccceEEEEECCCCCCCCHHHhCCCEEEEecCcH
Confidence 44555555433 222211112588999876443
No 61
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=36.59 E-value=26 Score=29.25 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=48.5
Q ss_pred ccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccccceecccc
Q psy8591 132 VGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSYVVSHS 210 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~~~~~~ 210 (570)
.|-..++++++|+++|+.+.+..-+ .....+...|-.+++ +.-+..+.+ ....|.|.-|.+..+..++.+.
T Consensus 25 ~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~~~~--r~~~~~~~~p~~~~~~~~~~~~ 96 (226)
T 1wdn_A 25 VGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLA------LAGITITDE--RKKAIDFSDGYYKSGLLVMVKA 96 (226)
T ss_dssp ESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSSSEE------EEEEECCHH--HHTTSEECSCCEEEEEEEEEET
T ss_pred EEeeHHHHHHHHHHhCCEEEEEECCHHHHHHHHhCCCCCEE------EEcCcCCHH--HhCccccccchhcCceEEEEeC
Confidence 4667799999999999998887411 111112222222221 111112223 1245666656555666666654
Q ss_pred ccc-ccccccccCceeeEEeecc
Q psy8591 211 KED-VSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 211 ~~~-~~~~~~~~~~~~~~~~~~~ 232 (570)
... +..-.=-.|+++|+++-+.
T Consensus 97 ~~~~i~~~~dL~g~~i~~~~g~~ 119 (226)
T 1wdn_A 97 NNNDVKSVKDLDGKVVAVKSGTG 119 (226)
T ss_dssp TCCSCSSSTTTTTCEEEEETTSH
T ss_pred CCCCCCCHHHhCCCEEEEEcCCc
Confidence 431 2211112589999986543
No 62
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=36.52 E-value=24 Score=30.66 Aligned_cols=97 Identities=8% Similarity=0.079 Sum_probs=52.7
Q ss_pred CCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccccce
Q psy8591 127 SQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSY 205 (570)
Q Consensus 127 d~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~ 205 (570)
+.+. .|-..++++++|+++|+.+.+..-+ ...+.+...|..+++ +.-+..+.+ ....|.|.-|.+.....
T Consensus 42 ~g~~-~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~~~~--r~~~~~~s~p~~~~~~~ 112 (249)
T 4f3p_A 42 GDKY-VGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVA------LSGMTIKEE--RRKAIDFSDPYYDSGLA 112 (249)
T ss_dssp TTEE-ESHHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHTTSCSEE------EEEEECCHH--HHTTEEECSCCEEEEEE
T ss_pred CCeE-EEEhHHHHHHHHHHcCCceEEEecCHHHHHHHHHCCCCCEE------EeccccCHH--HHcCcceecceeeccEE
Confidence 3444 4777899999999999998887411 111112223332321 111223333 22456666666666666
Q ss_pred ecccccc-cccccccccCceeeEEeecc
Q psy8591 206 VVSHSKE-DVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 206 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (570)
++.+... .+..-.--.|+++|+++.+.
T Consensus 113 ~~~~~~~~~i~~~~dL~g~~i~v~~g~~ 140 (249)
T 4f3p_A 113 AMVQANNTTIKSIDDLNGKVIAAKTGTA 140 (249)
T ss_dssp EEEETTCCSCCSSGGGTTSEEEEETTSH
T ss_pred EEEECCCCCcCChHHhCCCEEEEeCCCh
Confidence 6665433 12211112589999987654
No 63
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=36.31 E-value=65 Score=24.68 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=24.6
Q ss_pred hhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCC
Q psy8591 95 CIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGL 148 (570)
Q Consensus 95 ~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv 148 (570)
|.....+++.+.+.++-++..+.+|.. ..+.++.. +.+++++.+.|+
T Consensus 37 C~~~~~~l~~~~~~~~~~~~~v~i~~~-~~~~~~~~------~~~~~~~~~~~~ 83 (138)
T 4evm_A 37 CLASLPDTDEIAKEAGDDYVVLTVVSP-GHKGEQSE------ADFKNWYKGLDY 83 (138)
T ss_dssp HHHHHHHHHHHHHTCTTTEEEEEEECT-TSTTCCCH------HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEcC-CCCchhhH------HHHHHHHhhcCC
Confidence 334444455554445555656777643 33334444 556666666555
No 64
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=36.03 E-value=36 Score=31.35 Aligned_cols=33 Identities=15% Similarity=-0.031 Sum_probs=20.8
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHh-CCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFV-GLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~l-Gv~ 149 (570)
-++++ ++..||.+-. .+.++ +.++++|.+. |+.
T Consensus 197 ~~~pi-ilV~NK~Dl~-~~~~v------~~~~~~~~~~~~~~ 230 (255)
T 3c5h_A 197 TKKPI-VVVLTKCDEG-VERYI------RDAHTFALSKKNLQ 230 (255)
T ss_dssp TTCCE-EEEEECGGGB-CHHHH------HHHHHHHHTSSSCC
T ss_pred CCCCE-EEEEEccccc-ccHHH------HHHHHHHHhcCCCe
Confidence 46788 8899999431 11223 5678888763 554
No 65
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=35.82 E-value=67 Score=29.96 Aligned_cols=43 Identities=7% Similarity=-0.076 Sum_probs=25.6
Q ss_pred hhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhc
Q psy8591 17 DTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMH 67 (570)
Q Consensus 17 ~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~H 67 (570)
.+...+||||-+++=|.+.....+ +. .-|.++||++....-+.
T Consensus 99 ~l~~~yD~viiD~p~~~~~~~~~~----l~----~aD~viiv~~~~~~~~~ 141 (286)
T 2xj4_A 99 RAMAECDFILIDTPGGDSAITRMA----HG----RADLVVTPMNDSFVDFD 141 (286)
T ss_dssp HHHHHCSEEEEECCSSCCHHHHHH----HH----TCSEEEEEEESSHHHHT
T ss_pred HHHhcCCEEEEcCCCCccHHHHHH----HH----HCCEEEEEEcCCccHHH
Confidence 344678999999875543222222 12 34788888876554444
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=35.22 E-value=37 Score=27.43 Aligned_cols=65 Identities=17% Similarity=0.063 Sum_probs=35.9
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++...++.+... .++++ .+.+||.+.. +.++ ..+..+++|.+.|+.+--+. |+-+.|=.+|-+.|
T Consensus 93 ~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~--~~~~----~~~~~~~~~~~~~~~~~~~S------a~~~~gv~~l~~~l 159 (170)
T 1g16_A 93 NIKQWFKTVNEHANDEAQL-LLVGNKSDME--TRVV----TADQGEALAKELGIPFIESS------AKNDDNVNEIFFTL 159 (170)
T ss_dssp THHHHHHHHHHHSCTTCEE-EEEEECTTCT--TCCS----CHHHHHHHHHHHTCCEEECB------TTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcE-EEEEECccCC--cCcc----CHHHHHHHHHHcCCeEEEEE------CCCCCCHHHHHHHH
Confidence 444444444442 36777 7899998552 2222 23677889999987532221 23444545555554
No 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=34.87 E-value=25 Score=33.65 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=39.3
Q ss_pred HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 102 FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 102 IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++.+.+ .++++ .+.+||.+..+..+ .+.+.+.+++..+|-+..+.. |-|+-+.|=.+|-+.|
T Consensus 115 ~~~l~~-~~~pv-ilV~NK~Dl~~~~~-----~~~~~~~~l~~~~~~~~~i~~----vSA~~g~gv~~L~~~l 176 (308)
T 3iev_A 115 QNFIKP-LNKPV-IVVINKIDKIGPAK-----NVLPLIDEIHKKHPELTEIVP----ISALKGANLDELVKTI 176 (308)
T ss_dssp HHHTGG-GCCCE-EEEEECGGGSSSGG-----GGHHHHHHHHHHCTTCCCEEE----CBTTTTBSHHHHHHHH
T ss_pred HHHHHh-cCCCE-EEEEECccCCCCHH-----HHHHHHHHHHHhccCCCeEEE----EeCCCCCCHHHHHHHH
Confidence 455555 78898 88999995542222 245778888888874444444 3345566666666666
No 68
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=34.69 E-value=25 Score=36.31 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhCCcee
Q psy8591 135 LSKHYRQLCLFVGLFFE 151 (570)
Q Consensus 135 ~~~~lR~~C~~lGv~fa 151 (570)
+...+.+.|.+.|+-+.
T Consensus 419 ~~~~~~~~~~~~Gll~~ 435 (473)
T 4e3q_A 419 VSERIANTCTDLGLICR 435 (473)
T ss_dssp HHHHHHHHHHHTTEECE
T ss_pred HHHHHHHHHHHCCcEEE
Confidence 45778999999998653
No 69
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=34.27 E-value=51 Score=33.91 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.0
Q ss_pred EEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCc
Q psy8591 56 VLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQK 113 (570)
Q Consensus 56 VLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnv 113 (570)
+|=.+-.+.+|++|... .. .++.++.-.|...+.+|+..+.+.+++|+
T Consensus 57 Ilq~s~g~~~~~~g~~~-------~~---~~~~~~~i~ga~~~~~~v~~~A~~~~VPV 104 (358)
T 1dos_A 57 IVQFSNGGASFIAGKGV-------KS---DVPQGAAILGAISGAHHVHQMAEHYGVPV 104 (358)
T ss_dssp EEEECHHHHHHHHCTTS-------CC---CSTTHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred EEECChhHHHHhcCCCc-------cc---cchhhhHHHhHHHHHHHHHHHHHHCCCCE
Confidence 33333445888865421 11 24668889999999999999888789888
No 70
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=34.09 E-value=19 Score=36.72 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=64.6
Q ss_pred hhhccccEEEccCCCCCCC--ccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhh
Q psy8591 17 DTLLHIAYATQPNREYSVS--GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQG 94 (570)
Q Consensus 17 ~~~l~~DYVVTEAGFGADL--GaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG 94 (570)
++....||++-|.= |+=+ +..-.++| ..|.+|+++|||... .|.+..|.+ ++.-+.++.
T Consensus 221 ~~~~~~d~vlVEGq-Ggl~~P~~~~t~~l---l~g~~p~~vILv~~~-~~g~i~~~~----------~~~~p~l~~---- 281 (349)
T 2obn_A 221 RYGKNYDILHIEGQ-GSLLHPGSTATLPL---IRGSQPTQLVLVHRA-GQTHNGNNP----------HVPIPPLPE---- 281 (349)
T ss_dssp HHTTTCSEEEECCC-CCTTSTTCCTHHHH---HHHHCCSEEEEEEET-TCCBCSSCT----------TSBCCCHHH----
T ss_pred HhccCCCEEEEeCC-CcccCcChHhHHHH---HHHcCCCeEEEEECC-CCceECCCC----------ccCCCCHHH----
Confidence 34447899999942 4322 11112222 235689999999842 344444443 222233332
Q ss_pred hhchHHHHHhhhh--h--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhh
Q psy8591 95 CIKGRGQFSPILL--I--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGEL 170 (570)
Q Consensus 95 ~aNL~kHIeNi~k--v--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eL 170 (570)
...-++.+.. . -|+++-.+++|.|.+ |.++. .+.++++-++.|+. |+..+++|...|
T Consensus 282 ---~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~-~~~~~------~~~~~~ie~~~glP---------v~d~~r~g~~~l 342 (349)
T 2obn_A 282 ---VIRLYETVASGGGAFGTVPVVGIALNTAHL-DEYAA------KEAIAHTIAETGLP---------CTDVVRFGADVL 342 (349)
T ss_dssp ---HHHHHHHHHHTTTTSCCCCEEEEEEECTTS-CHHHH------HHHHHHHHHHHCSC---------EECHHHHCSHHH
T ss_pred ---HHHHHHHHHHhhccCCCCcEEEEEEECCCC-CHHHH------HHHHHHHHHHHCCC---------EEEEecCCHHHH
Confidence 1112222221 1 467888899999943 32222 25566666667765 333578888888
Q ss_pred hccc
Q psy8591 171 SNIL 174 (570)
Q Consensus 171 a~~l 174 (570)
.+.|
T Consensus 343 ~~~~ 346 (349)
T 2obn_A 343 LDAV 346 (349)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 71
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=33.60 E-value=40 Score=34.61 Aligned_cols=50 Identities=6% Similarity=-0.060 Sum_probs=34.9
Q ss_pred EEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCC
Q psy8591 55 VVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKT 121 (570)
Q Consensus 55 vVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF 121 (570)
++|=.+-.+++|.||..- .| +-.|...+.+++..+.+.+++|+ .+=+.|.
T Consensus 48 vIlq~s~g~~~y~~g~~~-------------~~---~v~g~~~~a~~v~~~A~~~~VPV-aLHlDHg 97 (349)
T 3elf_A 48 GIIQFSTGGAEFGSGLGV-------------KD---MVTGAVALAEFTHVIAAKYPVNV-ALHTDHC 97 (349)
T ss_dssp EEEEECHHHHHHHHCTTT-------------CC---HHHHHHHHHHHHHHHHTTSSSCE-EEEECCC
T ss_pred EEEEcChhHHhhcCcchh-------------hh---hhhhHHHHHHHHHHHHHHCCCCE-EEECCCC
Confidence 445455678899887541 12 66788899999998887789888 4444444
No 72
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=33.33 E-value=52 Score=26.60 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=36.7
Q ss_pred chHHHHHhhhh---hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcc
Q psy8591 97 KGRGQFSPILL---ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNI 173 (570)
Q Consensus 97 NL~kHIeNi~k---vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~ 173 (570)
++...+..+.. ..++++ .+..||.+..+. .++ ..+..+++|...|+.+ .+ +-|+-+.|=.+|-+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~--~~----~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 90 KASELRVQLRRARQTDDVPI-ILVGNKSDLVRS-REV----SVDEGRACAVVFDCKF--IE----TSAALHHNVQALFEG 157 (166)
T ss_dssp HHHHHHHHHHHCC---CCCE-EEEEECTTCCSS-CCS----CHHHHHHHHHHTTCEE--EE----CBGGGTBSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCE-EEEEeccccccc-ccc----CHHHHHHHHHHhCCcE--EE----eccCCCCCHHHHHHH
Confidence 44444444433 247888 889999854332 233 2356678888888742 32 223455565555555
Q ss_pred c
Q psy8591 174 L 174 (570)
Q Consensus 174 l 174 (570)
|
T Consensus 158 l 158 (166)
T 3q72_A 158 V 158 (166)
T ss_dssp H
T ss_pred H
Confidence 5
No 73
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=32.94 E-value=91 Score=25.67 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.3
Q ss_pred HHHHHHHHHhCC
Q psy8591 137 KHYRQLCLFVGL 148 (570)
Q Consensus 137 ~~lR~~C~~lGv 148 (570)
+.++++.++.|+
T Consensus 99 ~~~~~~~~~~~~ 110 (165)
T 3ha9_A 99 EMFRKFIANYGD 110 (165)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 555666666665
No 74
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=32.12 E-value=11 Score=31.08 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=34.3
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeee
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVT 153 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~ 153 (570)
+|++..+.+.+-+|++. ..|||-| |++.+.+-|+.|.+.
T Consensus 11 ~lK~~a~~v~~~lGl~~-s~Ai~~f-----------------l~~v~~~~~iPF~~~ 49 (79)
T 4fxe_A 11 ELKARSYAALEKMGVTP-SEALRLM-----------------LEYIADNERLPFKQT 49 (79)
T ss_dssp HHHHHHHHHHHHHTCCH-HHHHHHH-----------------HHHHHHHSSCSSCCH
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHH-----------------HHHHHHhCCCCCccc
Confidence 67778888888899999 8899988 789999999999887
No 75
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=31.62 E-value=29 Score=29.53 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=37.1
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++...++.+... -++++ .+.+||.+..+. .++ ..+.++++|.+.|+.+ .+ +-|+-+.|=.+|-+.|
T Consensus 113 ~~~~~~~~i~~~~~~~~pi-iiv~NK~Dl~~~-~~v----~~~~~~~~~~~~~~~~--~~----~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVM-AIAGNKCDLSDI-REV----PLKDAKEYAESIGAIV--VE----TSAKNAINIEELFQGI 180 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEE-EEEEECGGGGGG-CCS----CHHHHHHHHHTTTCEE--EE----CBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcE-EEEEECcccccc-ccc----CHHHHHHHHHHcCCEE--EE----EeCCCCcCHHHHHHHH
Confidence 344444444441 36777 789999955331 222 1267889999988753 22 1234455555665555
No 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=31.43 E-value=74 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=28.8
Q ss_pred HHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 99 RGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
...|.+.....++++ .+.+||.+..+.... .+.++++|..+|+.+
T Consensus 98 ~~~~~~~~~~~~~p~-i~v~nK~Dl~~~~~~------~~~~~~~~~~~~~~~ 142 (189)
T 4dsu_A 98 REQIKRVKDSEDVPM-VLVGNKCDLPSRTVD------TKQAQDLARSYGIPF 142 (189)
T ss_dssp HHHHHHHTTCSCCCE-EEEEECTTSSSCSSC------HHHHHHHHHHHTCCE
T ss_pred HHHHHHhcCCCCCcE-EEEEECccCcccccC------HHHHHHHHHHcCCeE
Confidence 333433333357888 889999965433322 377889999999763
No 77
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.56 E-value=1.8e+02 Score=25.54 Aligned_cols=34 Identities=15% Similarity=-0.067 Sum_probs=20.3
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEe
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTT 60 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVAT 60 (570)
..++||||-.++-|.+....-++. .-|.+++|++
T Consensus 116 ~~~yD~viiD~p~~~~~~~~~~l~--------~ad~viiv~~ 149 (245)
T 3ea0_A 116 ASFYDYIIVDFGASIDHVGVWVLE--------HLDELCIVTT 149 (245)
T ss_dssp HHHCSEEEEEEESSCCTTHHHHGG--------GCSEEEEEEC
T ss_pred HhhCCEEEEeCCCCCchHHHHHHH--------HCCEEEEEec
Confidence 346899998887555432222221 3477888873
No 78
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=30.04 E-value=22 Score=38.36 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=42.3
Q ss_pred hhHHHHhhhHHhhhccccEEEccCC-----------------CCCCCcccccccc--------------c----------
Q psy8591 6 NLFLKISRNFYDTLLHIAYATQPNR-----------------EYSVSGMEKFFNI--------------K---------- 44 (570)
Q Consensus 6 ~~~~~~~~~~~~~~l~~DYVVTEAG-----------------FGADLGaEKF~DI--------------K---------- 44 (570)
.+.-.|-+.|.+++...|++|.|.| |..++|-|.|+-| |
T Consensus 118 ~~~~~i~~~~~~~~~~~d~~i~e~~gt~~di~~~~~~~~~~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~ 197 (545)
T 1s1m_A 118 HITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKE 197 (545)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECSCTTSSTTHHHHHHHHHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEECCCChhhhhChHHHHHHHHHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHH
Confidence 3444567888999999999999988 5567888998877 2
Q ss_pred cccCCCCCCeEEEE
Q psy8591 45 CRTSGKIPDAVVLV 58 (570)
Q Consensus 45 CR~sGL~PdavVLV 58 (570)
-|..|++||.+|+=
T Consensus 198 l~s~gi~pd~lv~R 211 (545)
T 1s1m_A 198 LLSIGIQPDILICR 211 (545)
T ss_dssp HHTTTCCCSEEEEE
T ss_pred HhCCCCccCEEEEe
Confidence 47889999988764
No 79
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=29.73 E-value=2.2e+02 Score=24.68 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=15.8
Q ss_pred ccchhHHHHHHHHHhCCce
Q psy8591 132 VGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~f 150 (570)
+.++.+.++++|++.|+.+
T Consensus 159 ~~~~~~~i~~~a~~~~v~~ 177 (232)
T 3dc7_A 159 QSDYEAAIAQMTADYGVPH 177 (232)
T ss_dssp HHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHcCCcE
Confidence 4678899999999998764
No 80
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=29.51 E-value=27 Score=37.07 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=54.7
Q ss_pred ccccCChHHHHhhhhchHHH--------------HHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhC
Q psy8591 82 EYTEVSTSTEHQGCIKGRGQ--------------FSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVG 147 (570)
Q Consensus 82 el~eENldaLekG~aNL~kH--------------IeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lG 147 (570)
-+...|.+.+++|++..... |-.+.+.||.++ ++.-| -+ ++.+.+-+++.++|
T Consensus 159 ~IDS~dpevleaALea~a~~~plI~sat~dn~e~m~~lAa~y~~pV-i~~~~---------dl---~~lkelv~~a~~~G 225 (446)
T 4djd_C 159 VLMADDPDVLKEALAGVADRKPLLYAATGANYEAMTALAKENNCPL-AVYGN---------GL---EELAELVDKIVALG 225 (446)
T ss_dssp EEECSCHHHHHHHHGGGGGGCCEEEEECTTTHHHHHHHHHHTTCCE-EEECS---------SH---HHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHHhhcCcCCeeEecchhhHHHHHHHHHHcCCcE-EEEec---------cH---HHHHHHHHHHHHCC
Confidence 33445666666666544321 222333589998 55434 11 12367788899999
Q ss_pred CceeeeCCCCceEeeeccCchhhhcccCcchhccccc---cccCCCCccccccccccccce
Q psy8591 148 LFFEVTNPSGVVVSAVDFGSGELSNILPGFLVESRQT---DESHDMGHFEYGFPSMLIPSY 205 (570)
Q Consensus 148 v~fav~~~~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~---des~~~~~Fe~~y~~~~~~~~ 205 (570)
+..-+.| -|.++++.-+..++. +|.. ++ ++ .++||-|+.+|.
T Consensus 226 I~~IvLD----------PG~~g~~~t~~~~~~-iRr~AL~~~--d~---~LgyPvi~~~sr 270 (446)
T 4djd_C 226 HKQLVLD----------PGARETSRAIADFTQ-IRRLAIKKR--FR---SFGYPIIALTTA 270 (446)
T ss_dssp CCCEEEE----------CCCCSHHHHHHHHHH-HHHHHHHSC--CG---GGCSCBEEECCC
T ss_pred CCcEEEC----------CCchhHHHHHHHHHH-HHHHhhhcc--Cc---ccCCCEEeccCC
Confidence 9633333 333355655555544 5665 44 22 579999998875
No 81
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=29.14 E-value=81 Score=28.61 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=21.6
Q ss_pred HHhhhccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEe
Q psy8591 15 FYDTLLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTT 60 (570)
Q Consensus 15 ~~~~~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVAT 60 (570)
+-.+...+||||-.++-|.+....-.+. .-|.+++|++
T Consensus 138 l~~l~~~yD~viiD~pp~~~~~~~~~l~--------~aD~vivv~~ 175 (267)
T 3k9g_A 138 LGTLYYKYDYIVIDTNPSLDVTLKNALL--------CSDYVIIPMT 175 (267)
T ss_dssp HHTTCTTCSEEEEEECSSCSHHHHHHHT--------TCSEEEEEEE
T ss_pred HHHhhcCCCEEEEECcCCccHHHHHHHH--------HCCeEEEEeC
Confidence 3344567899998776544332222221 2477888874
No 82
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=28.98 E-value=29 Score=28.78 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=24.2
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.++++ .+.+||.+..+.. .+.++++|.++|+.+
T Consensus 121 ~~~pi-ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 121 LDIPT-IVAVNKLDKIKNV--------QEVINFLAEKFEVPL 153 (190)
T ss_dssp TTCCE-EEEEECGGGCSCH--------HHHHHHHHHHHTCCG
T ss_pred cCCce-EEEeehHhccCcH--------HHHHHHHHHHhhhhh
Confidence 68888 8899998543222 367889999999853
No 83
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=28.91 E-value=40 Score=33.18 Aligned_cols=72 Identities=7% Similarity=-0.097 Sum_probs=44.2
Q ss_pred hccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCChHHHHhhhhch
Q psy8591 19 LLHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGCIKG 98 (570)
Q Consensus 19 ~l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENldaLekG~aNL 98 (570)
..++||||--++-|.+.- ..++-+ .-|.++||++--.+ ++.+..+|+.+|
T Consensus 245 ~~~yD~VIID~pP~~~~~---~~~al~-----~aD~vliv~~p~~~----------------------~~~~~~~~l~~l 294 (403)
T 3ez9_A 245 ADDYDFIFIDTGPHLDPF---LLNGLA-----ASDLLLTPTPPAQV----------------------DFHSTLKYLTRL 294 (403)
T ss_dssp GGGCSEEEEEECSSCSHH---HHHHHH-----HCSEEEEEECSSHH----------------------HHHHHHHHHHTH
T ss_pred hhcCCEEEEECCCCccHH---HHHHHH-----HCCEEEEEecCchh----------------------hHHHHHHHHHHH
Confidence 346899998887655321 111111 24788888843222 344578899999
Q ss_pred HHHHHhhhhhcCCCcc----eeeecCC
Q psy8591 99 RGQFSPILLICGLQKH----RTSKNKT 121 (570)
Q Consensus 99 ~kHIeNi~kvfGVnvf----vVAiNkF 121 (570)
.+-++.+++ +|.+.. +..+|++
T Consensus 295 ~~~~~~l~~-~~~~~~l~giv~vl~~~ 320 (403)
T 3ez9_A 295 PEMLEQLEE-EGVEPRLSASIGFMSKM 320 (403)
T ss_dssp HHHHHHHHH-TTCCCCCCEEEEEECC-
T ss_pred HHHHHHHHh-cCCCCceeEEEEEEecc
Confidence 998888887 666642 2256777
No 84
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=28.84 E-value=12 Score=32.89 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCCCCCCCcccccchhHHHHHHHHHh-CCceeeeC
Q psy8591 121 TSMFDVSQPITVGKLSKHYRQLCLFV-GLFFEVTN 154 (570)
Q Consensus 121 F~~~Dtd~EI~~~~~~~~lR~~C~~l-Gv~fav~~ 154 (570)
|+..|.+.++ .|--.++++++|+++ |+.+.+..
T Consensus 22 ~~~~d~~G~~-~G~~vdl~~~ia~~l~g~~~~~~~ 55 (243)
T 4gvo_A 22 VCFLDENGKL-TGYDVELVKEIDKRLPGYKFKFKT 55 (243)
T ss_dssp TEEECTTSCE-ESHHHHHHHHHHHTCTTEEEEEEE
T ss_pred eEEECCCCcE-EEhHHHHHHHHHHhccCCeEEEEE
Confidence 4334667776 577779999999997 99888764
No 85
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.75 E-value=57 Score=27.74 Aligned_cols=65 Identities=18% Similarity=0.092 Sum_probs=36.9
Q ss_pred hchHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce-eeeCCCCceEeeeccCchhhhc
Q psy8591 96 IKGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF-EVTNPSGVVVSAVDFGSGELSN 172 (570)
Q Consensus 96 aNL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f-av~~~~g~V~s~~~~Gg~eLa~ 172 (570)
.++...++.+... .++++ .+.+||.+.. +.++ ..+.++++|.++|+.+ +++ |+-+.|=.+|-+
T Consensus 109 ~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~--~~~~----~~~~~~~~~~~~~~~~~~~S-------a~~~~gi~~l~~ 174 (213)
T 3cph_A 109 TNIKQWFKTVNEHANDEAQL-LLVGNKSDME--TRVV----TADQGEALAKELGIPFIESS-------AKNDDNVNEIFF 174 (213)
T ss_dssp HTHHHHHHHHHHHTTTCSEE-EEEEECTTCS--SCCS----CHHHHHHHHHHHTCCEEECB-------TTTTBSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCE-EEEEECCCCc--cccc----CHHHHHHHHHHcCCEEEEEe-------CCCCCCHHHHHH
Confidence 3444445444442 26777 7899999552 2222 2367788999988752 232 234455555555
Q ss_pred cc
Q psy8591 173 IL 174 (570)
Q Consensus 173 ~l 174 (570)
.|
T Consensus 175 ~l 176 (213)
T 3cph_A 175 TL 176 (213)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 86
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=28.74 E-value=15 Score=39.03 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=36.6
Q ss_pred hhHHhhhcccc-EEEccCCCCCCCcccccccc------ccccCCCCCCeEEEEEe
Q psy8591 13 RNFYDTLLHIA-YATQPNREYSVSGMEKFFNI------KCRTSGKIPDAVVLVTT 60 (570)
Q Consensus 13 ~~~~~~~l~~D-YVVTEAGFGADLGaEKF~DI------KCR~sGL~PdavVLVAT 60 (570)
+||.+.+...| +.|-..-+|..+|+|+.+.+ +||..|. | |++||
T Consensus 238 ~nldeIl~~sDgImVaRGDLgvei~~e~v~~~Qk~ii~~~~~~gk-p---vi~AT 288 (461)
T 3qtg_A 238 NNLEELVQCSDYVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGK-P---IAVAT 288 (461)
T ss_dssp HTHHHHHHTCSEEEEEHHHHTTTSCTTTHHHHHHHHHHHHHHTTC-C---EEEES
T ss_pred HhHHHHHHhcccEEEccccccccCCHHHHHHHHHHHHHHHHHhCC-C---EEEec
Confidence 68888888888 67778889999999987766 9999995 3 78876
No 87
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=28.40 E-value=24 Score=31.78 Aligned_cols=99 Identities=11% Similarity=0.004 Sum_probs=52.1
Q ss_pred CCCCcccccchhHHHHHHHHHh---CCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFV---GLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSM 200 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~l---Gv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~ 200 (570)
|.+.+. .|-..++++++++++ |+.+.+..-. .........|-.++. +.-+..+.+ ....|.|..|.+
T Consensus 61 ~~~g~~-~G~~~dl~~~i~~~~~~~g~~~~~~~~~~~~~~~~l~~G~~D~~------~~~~~~~~~--r~~~~~~s~p~~ 131 (292)
T 1xt8_A 61 DEKGNN-QGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDII------LANFTQTPQ--RAEQVDFCSPYM 131 (292)
T ss_dssp CTTSCE-ESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHHHHTTSCSEE------CSSCBCCHH--HHTTEEECCCCE
T ss_pred CCCCCE-eeEhHHHHHHHHHHhccCCceEEEEEcCHHHHHHHHhCCCeeEE------eecCCCCcc--hhcceeeeccce
Confidence 444444 566779999999999 9998887421 111222223333332 111112222 123566666665
Q ss_pred cccceecccccccccccccccCceeeEEeecc
Q psy8591 201 LIPSYVVSHSKEDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
.....++.+....+..-.=-.|+++|+++-+.
T Consensus 132 ~~~~~~~~~~~~~i~~~~dL~g~~i~~~~g~~ 163 (292)
T 1xt8_A 132 KVALGVAVPKDSNITSVEDLKDKTLLLNKGTT 163 (292)
T ss_dssp EEEEEEEEETTCCCCSSGGGTTSEEEEETTSH
T ss_pred ecceEEEEECCCCCCCHHHhCCCEEEEeCCCc
Confidence 55666666543322211112489999986543
No 88
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=28.04 E-value=39 Score=28.50 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=37.0
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++.+.++.+.+. -++++ .+.+||.+..+. .++ ..+.++++|.++|+.+--+ -|+-+.|=.+|-+.|
T Consensus 112 ~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~------Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 112 AVQDWATQIKTYSWDNAQV-ILVGNKCDLEDE-RVV----PAEDGRRLADDLGFEFFEA------SAKENINVKQVFERL 179 (189)
T ss_dssp THHHHHHHHHHHSCTTCEE-EEEEECTTCGGG-CCS----CHHHHHHHHHHHTCEEEEC------BTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEEECcccccc-cCC----CHHHHHHHHHHcCCeEEEE------ECCCCCCHHHHHHHH
Confidence 444445554442 36777 789999954322 222 1367889999999753222 123444545555555
No 89
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=27.30 E-value=98 Score=25.18 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHHHhCCc----eeeeCCCCceEeee--ccCchhhhcccCcch
Q psy8591 141 QLCLFVGLF----FEVTNPSGVVVSAV--DFGSGELSNILPGFL 178 (570)
Q Consensus 141 ~~C~~lGv~----fav~~~~g~V~s~~--~~Gg~eLa~~l~~f~ 178 (570)
++|..+|+. +-+.++.|.++... .....+|.+.|...+
T Consensus 112 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~ 155 (164)
T 2h30_A 112 TIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN 155 (164)
T ss_dssp HHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred HHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 456666664 45677778876543 122334444443333
No 90
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=27.13 E-value=35 Score=29.48 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCCCcccccchhHHHHHHHHHhCCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCcccccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFVGLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIP 203 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~ 203 (570)
|.+.+. .|-..++++.+++++|+.+.+..-+ .....+...|-.++ .+.-+..+.+ ....|.|..|.+...
T Consensus 59 ~~~g~~-~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~l~~g~~D~------~~~~~~~~~~--r~~~~~~s~p~~~~~ 129 (269)
T 4i62_A 59 DGKNQI-VGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADL------AISGVSKTDE--RSKVFDFSTPYYTAK 129 (269)
T ss_dssp TTEEEE-ESHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHTTSCSE------ECSSCBCCHH--HHTTEEECSCCEECC
T ss_pred CCCCcE-eeecHHHHHHHHHHHCCceEEEEcCHHHHHHHHhCCCccE------EecCCcCCHh--Hhhceecccchhhcc
Confidence 344444 5667789999999999998887421 01111222232222 1211223333 235667766666666
Q ss_pred ceeccccc--ccccccccccCceeeEEeecc
Q psy8591 204 SYVVSHSK--EDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 232 (570)
..++.+.. ..+..-.=-.|+++|+++-+.
T Consensus 130 ~~~~~~~~~~~~i~~~~dL~g~~i~~~~g~~ 160 (269)
T 4i62_A 130 NKLIVKKSDLATYQSVNDLAQKKVGAQKGSI 160 (269)
T ss_dssp EEEEEEGGGTTTCSSGGGGC-CEEEEETTSH
T ss_pred eEEEEECCccccccCHHHhCCCeEEEecCch
Confidence 66666544 222111112589999987543
No 91
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=26.76 E-value=1.1e+02 Score=26.02 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=22.5
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH-hCCceeee
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF-VGLFFEVT 153 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~-lGv~fav~ 153 (570)
|+.+..+++|.| .....+.. +.+++++++ .|+.|.+.
T Consensus 71 ~~~vi~is~d~~-~~~~~d~~------~~~~~~~~~~~~~~~~~~ 108 (180)
T 3kij_A 71 HFSVLAFPCNQF-GESEPRPS------KEVESFARKNYGVTFPIF 108 (180)
T ss_dssp SEEEEEEECCCS-TTCCCSCH------HHHHHHHHHHHCCCSCBB
T ss_pred CeEEEEEECCcc-ccCCCCCH------HHHHHHHHHhcCCCCcee
Confidence 455545555667 32223334 677888888 88887764
No 92
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=26.64 E-value=69 Score=29.26 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=14.8
Q ss_pred ccchhHHHHHHHHHhCCc
Q psy8591 132 VGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~ 149 (570)
+..+.+.+|++|.+.|+.
T Consensus 195 ~~~~n~~i~~~a~~~~v~ 212 (274)
T 3bzw_A 195 IDAYVQAIKEAGNIWGIP 212 (274)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 467889999999998864
No 93
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=26.35 E-value=18 Score=30.24 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=47.4
Q ss_pred ccchhHHHHHHHHHhCCceeeeCC-C-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccccceeccc
Q psy8591 132 VGKLSKHYRQLCLFVGLFFEVTNP-S-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSYVVSH 209 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~fav~~~-~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~~~~~ 209 (570)
.|-..++++++|+++|+.+.+..- + ...+.+...|-.+++ +.-+..+.+ ....|.|..|.+.....++.+
T Consensus 24 ~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~D~~------~~~~~~~~~--r~~~~~~~~p~~~~~~~~~~~ 95 (228)
T 2pyy_A 24 SGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLG------IAAISITAE--REQNFDFSLPIFASGLQIMVR 95 (228)
T ss_dssp BSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHTTSCSEE------CSSCBCCHH--HHHHSEECSCSEEEEEEEEEE
T ss_pred EEEeHHHHHHHHHHhCCcEEEEEcCCHHHHHHHHHCCCcCEE------EeccccCHH--HHccceecccchhcceEEEEE
Confidence 466668999999999999988753 1 111222333333332 111122222 123456655655555555554
Q ss_pred ccc----cc-cccccccCceeeEEeecc
Q psy8591 210 SKE----DV-SRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 210 ~~~----~~-~~~~~~~~~~~~~~~~~~ 232 (570)
... .+ +-+.+ .|+++|+++-+.
T Consensus 96 ~~~~~~~~~~~~~dL-~g~~i~~~~g~~ 122 (228)
T 2pyy_A 96 NLESGTGDIRSIDDL-PGKVVATTAGST 122 (228)
T ss_dssp C-----CCCCSGGGC-TTCEEEEETTSH
T ss_pred CCccccCCcCCHHHc-CCCeEEEEcCcH
Confidence 332 12 11222 589999876543
No 94
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=26.31 E-value=71 Score=26.03 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=21.8
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHH-hCCc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLF-VGLF 149 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~-lGv~ 149 (570)
.++++ .+.+||.+..+....+ ..+.++++|.. .++.
T Consensus 117 ~~~p~-ilv~nK~Dl~~~~~~v----~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 117 ETFPF-VILGNKIDAEESKKIV----SEKSAQELAKSLGDIP 153 (182)
T ss_dssp TTCCE-EEEEECTTSCGGGCCS----CHHHHHHHHHHTTSCC
T ss_pred CCCcE-EEEEECCccccccccC----CHHHHHHHHHhcCCCe
Confidence 56787 7899999543333322 23567788874 4443
No 95
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=26.27 E-value=56 Score=26.59 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=30.3
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce-eeeCCCCceEeeeccCchhhhccc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF-EVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f-av~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
.++++ .+..||.+..+. .++ ..+..+++|...|+.+ +++ |+-+.|=.+|-+.|
T Consensus 110 ~~~pi-ilv~NK~Dl~~~-~~v----~~~~~~~~~~~~~~~~~~~S-------a~~g~gi~~l~~~l 163 (175)
T 2nzj_A 110 DHVPI-ILVGNKADLARC-REV----SVEEGRACAVVFDCKFIETS-------ATLQHNVAELFEGV 163 (175)
T ss_dssp --CCE-EEEEECTTCTTT-CCS----CHHHHHHHHHHHTSEEEECB-------TTTTBSHHHHHHHH
T ss_pred CCCCE-EEEEEChhhccc-ccc----CHHHHHHHHHHcCCeEEEEe-------cCCCCCHHHHHHHH
Confidence 37887 889999955332 333 1256678888888643 333 23444555555555
No 96
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=26.03 E-value=57 Score=31.16 Aligned_cols=23 Identities=13% Similarity=-0.210 Sum_probs=18.7
Q ss_pred hHHHHhhhHHhhhccccEEEccC
Q psy8591 7 LFLKISRNFYDTLLHIAYATQPN 29 (570)
Q Consensus 7 ~~~~~~~~~~~~~l~~DYVVTEA 29 (570)
.+-+|.+.|.++...+||||-|.
T Consensus 112 ~~~~i~~~~~~l~~~~D~vlIEG 134 (251)
T 3fgn_A 112 ARDQIVRLIADLDRPGRLTLVEG 134 (251)
T ss_dssp CHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEEEC
Confidence 34567777888888999999996
No 97
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=25.85 E-value=26 Score=31.82 Aligned_cols=98 Identities=20% Similarity=0.120 Sum_probs=52.3
Q ss_pred CCCCcccccchhHHHHHHHHHh---CCceeeeCCC-CceEeeeccCchhhhcccCcchhccccccccCCCCccccccccc
Q psy8591 125 DVSQPITVGKLSKHYRQLCLFV---GLFFEVTNPS-GVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSM 200 (570)
Q Consensus 125 Dtd~EI~~~~~~~~lR~~C~~l---Gv~fav~~~~-g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~ 200 (570)
|.+.++ .|-..++++.+++++ |+.+.+.... .....+...|-.+++ +.-+-.+.+ ....|.|..|.+
T Consensus 72 ~~~g~~-~G~~~dl~~~i~~~~~~~g~~v~~~~~~~~~~~~~l~~G~~D~~------~~~~~~~~~--r~~~~~~~~p~~ 142 (291)
T 2yjp_A 72 DANGKN-QGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLI------LANFTQTPE--RAEAVDFADPYM 142 (291)
T ss_dssp CTTSCE-ESHHHHHHHHHHHHHHSCGGGEEEEECCGGGHHHHHHTTSCSEE------CSSCBCCHH--HHTTEEECCCCE
T ss_pred CCCCCE-eehHHHHHHHHHHHhccCCceEEEEEccHHHHHHHHhCCCeeEE------EeCCCCChH--HHccceeccCee
Confidence 444454 577779999999999 9998887421 112222223322221 111112222 123466666666
Q ss_pred cccceecccccccccc-cccccCceeeEEeecc
Q psy8591 201 LIPSYVVSHSKEDVSR-DRISSGYTLGVVRTSG 232 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 232 (570)
..+..++.+...++.. +.+ .|+++|+.+-+.
T Consensus 143 ~~~~~l~~~~~~~i~sl~dL-~gk~v~~~~g~~ 174 (291)
T 2yjp_A 143 KVALGVVSPKNKPITDMAQL-KDQTLLVNKGTT 174 (291)
T ss_dssp EECEEEEEETTSCCCSGGGG-TTSEEEEETTSH
T ss_pred ecceEEEEeCCCCCCCHHHh-CCCEEEEecCCc
Confidence 6666666664432221 122 489999986544
No 98
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=25.84 E-value=38 Score=34.49 Aligned_cols=49 Identities=4% Similarity=-0.299 Sum_probs=36.2
Q ss_pred chHHHHHhhhhhcCCCcceeeecCCCCCCCCCccccc-chhHHHHHHHHHhCCceeee
Q psy8591 97 KGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVG-KLSKHYRQLCLFVGLFFEVT 153 (570)
Q Consensus 97 NL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~-~~~~~lR~~C~~lGv~fav~ 153 (570)
.+++||+-++. .||.+| ++|.| ..|. .+ . ++.+.+.+.+++.|+.|++.
T Consensus 105 v~~~h~~~Ak~-aGIDgf--~l~w~-~~~~---~~-d~~~l~~~l~aA~~~~~k~~f~ 154 (380)
T 4ad1_A 105 ILTKHMDMFVM-ARTGVL--ALTWW-NEQD---ET-EAKRIGLILDAADKKKIKVCFH 154 (380)
T ss_dssp HHHHHHHHHHH-HTEEEE--EEEEC-CCCS---HH-HHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHH-cCCCEE--EEEec-CCCC---cc-cHHHHHHHHHHHHHcCCeEEEE
Confidence 58899999999 999984 67777 5442 11 2 33467778899999998765
No 99
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.69 E-value=75 Score=25.49 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=28.6
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCC--CcccccchhHHHHHHHHHhCCce
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVS--QPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd--~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
++...++.+.+. -++++ .+..||.+..+.+ .++ ..+..+++|...|+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~v----~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 93 KARHWVKELHEQASKDIII-ALVGNKIDXLQEGGERKV----AREEGEKLAEEKGLLF 145 (170)
T ss_dssp HHHHHHHHHHHHSCTTCEE-EEEEECGGGGGSSCCCCS----CHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHhcCCCCcE-EEEEECCCccccccccCC----CHHHHHHHHHHcCCEE
Confidence 344444444432 35666 7789998654432 233 2356788888888753
No 100
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=25.52 E-value=1.8e+02 Score=26.50 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=40.4
Q ss_pred HhhhHHhhh--ccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEeehhhhhcCCCCCCCCCCCCCCccccCCh
Q psy8591 11 ISRNFYDTL--LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVST 88 (570)
Q Consensus 11 ~~~~~~~~~--l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATVRALK~HGG~~~v~~G~PL~~el~eENl 88 (570)
.-+++++.+ .++||||-+++=|.+...--.+.+. .-|.++||++... -.+
T Consensus 116 ~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~------~aD~viiv~~~~~----------------------~s~ 167 (262)
T 2ph1_A 116 MIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDA------KPTGVVVVSTPQE----------------------LTA 167 (262)
T ss_dssp HHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHH------CCSEEEEEECSSS----------------------CCH
T ss_pred HHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhc------cCCeEEEEecCcc----------------------chH
Confidence 334555544 5799999998755432111111110 2477888873220 112
Q ss_pred HHHHhhhhchHHHHHhhhhhcCCCcceeeecCCC
Q psy8591 89 STEHQGCIKGRGQFSPILLICGLQKHRTSKNKTS 122 (570)
Q Consensus 89 daLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~ 122 (570)
.. +.+-++.+++ +|++...+.+|++.
T Consensus 168 ~~-------~~~~~~~l~~-~~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 168 VI-------VEKAINMAEE-TNTSVLGLVENMSY 193 (262)
T ss_dssp HH-------HHHHHHHHHT-TTCCEEEEEETTCC
T ss_pred HH-------HHHHHHHHHh-CCCCEEEEEECCCc
Confidence 22 2333444444 67888778999983
No 101
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=25.42 E-value=1.5e+02 Score=24.69 Aligned_cols=13 Identities=15% Similarity=-0.102 Sum_probs=10.6
Q ss_pred CCCcceeeecCCCC
Q psy8591 110 GLQKHRTSKNKTSM 123 (570)
Q Consensus 110 GVnvfvVAiNkF~~ 123 (570)
++++ ++.+||.+.
T Consensus 127 ~~pi-ilv~NK~Dl 139 (199)
T 4bas_A 127 RVPF-LFFANKMDA 139 (199)
T ss_dssp BCCE-EEEEECTTS
T ss_pred CCCE-EEEEECcCC
Confidence 7788 889999954
No 102
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=24.97 E-value=23 Score=30.67 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=15.2
Q ss_pred ccchhHHHHHHHHHhCCce
Q psy8591 132 VGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~f 150 (570)
+.++.+.++++|.+.|+.+
T Consensus 152 ~~~~n~~l~~~a~~~~v~~ 170 (218)
T 1vjg_A 152 TIDLSQQLALVCQDLDVPY 170 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHcCCcE
Confidence 4567899999999987654
No 103
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=24.81 E-value=67 Score=27.03 Aligned_cols=36 Identities=6% Similarity=0.005 Sum_probs=24.1
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.++++ .+.+||.+..+. .++ ..+..+++|...|+.+
T Consensus 126 ~~~pi-ilv~nK~Dl~~~-~~v----~~~~~~~~~~~~~~~~ 161 (189)
T 1z06_A 126 NDIPR-ILVGNKCDLRSA-IQV----PTDLAQKFADTHSMPL 161 (189)
T ss_dssp SCCCE-EEEEECTTCGGG-CCS----CHHHHHHHHHHTTCCE
T ss_pred CCCCE-EEEEECcccccc-cee----CHHHHHHHHHHcCCEE
Confidence 46777 889999954332 222 2366788999988753
No 104
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=24.54 E-value=48 Score=31.52 Aligned_cols=23 Identities=0% Similarity=-0.146 Sum_probs=18.7
Q ss_pred hHHHHhhhHHhhhccccEEEccC
Q psy8591 7 LFLKISRNFYDTLLHIAYATQPN 29 (570)
Q Consensus 7 ~~~~~~~~~~~~~l~~DYVVTEA 29 (570)
.+-+|.+.|.+++...||||-|.
T Consensus 117 ~~~~I~~~~~~l~~~~D~vlIEG 139 (242)
T 3qxc_A 117 DTDNLTQRLHNFTKTYDLVIVEG 139 (242)
T ss_dssp CHHHHHHHHHHGGGTCSEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEEEC
Confidence 34567777888889999999996
No 105
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}
Probab=24.54 E-value=1.8e+02 Score=27.74 Aligned_cols=56 Identities=9% Similarity=-0.051 Sum_probs=31.4
Q ss_pred HHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCC--CCCCcccccchhHHHHHHHHHhCCce
Q psy8591 90 TEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMF--DVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 90 aLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~--Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
.++.=...|+++++.+.+.+|..+.......+... +.+.+ |.+.+++.|+++|...
T Consensus 257 ~~~~~~~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~g~~~ 314 (373)
T 3gb0_A 257 KMEAQVAKMKEAFETTAKEMGGHADVEVNVMYPGFKFADGDH-----VVEVAKRAAEKIGRTP 314 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECCEECCTTCH-----HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEecccCCcccCCCCH-----HHHHHHHHHHHhCCCc
Confidence 34444445666666665557766522222223222 33443 4688999999988764
No 106
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=24.47 E-value=93 Score=25.45 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=36.6
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++.+.++.+... .++++ .+.+||.+..+. .++ ..+.++++|...|+.+--+. |+-+.|=.+|-+.|
T Consensus 101 ~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~S------a~~~~gi~~l~~~l 168 (180)
T 2g6b_A 101 NIQAWLTEIHEYAQHDVAL-MLLGNKVDSAHE-RVV----KREDGEKLAKEYGLPFMETS------AKTGLNVDLAFTAI 168 (180)
T ss_dssp THHHHHHHHHHHSCTTCEE-EEEEECCSTTSC-CCS----CHHHHHHHHHHHTCCEEECC------TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcE-EEEEECcccCcc-ccc----CHHHHHHHHHHcCCeEEEEe------CCCCCCHHHHHHHH
Confidence 444444444432 46777 789999965432 222 13567888998887543221 23444444555544
No 107
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=24.34 E-value=46 Score=26.99 Aligned_cols=14 Identities=21% Similarity=-0.042 Sum_probs=10.9
Q ss_pred cCCCcceeeecCCCC
Q psy8591 109 CGLQKHRTSKNKTSM 123 (570)
Q Consensus 109 fGVnvfvVAiNkF~~ 123 (570)
.++++ .+.+||.+.
T Consensus 107 ~~~pi-ilv~nK~Dl 120 (171)
T 1upt_A 107 RKAIL-VVFANKQDM 120 (171)
T ss_dssp TTCEE-EEEEECTTS
T ss_pred CCCEE-EEEEECCCC
Confidence 46787 889999854
No 108
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=24.19 E-value=45 Score=34.07 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=20.3
Q ss_pred HHhhhhchHHHHHhhhhhcCCCc
Q psy8591 91 EHQGCIKGRGQFSPILLICGLQK 113 (570)
Q Consensus 91 LekG~aNL~kHIeNi~kvfGVnv 113 (570)
-++.++|+++||+|+.+ +|+++
T Consensus 99 r~~~ie~~k~~i~~aa~-lGi~~ 120 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGA-AGIPV 120 (386)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCCE
T ss_pred HHHHHHHHHHHHHHHHH-cCCCE
Confidence 67889999999999999 99997
No 109
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=24.14 E-value=87 Score=27.07 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=38.5
Q ss_pred hhchHHHHHhhhhh---cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhh
Q psy8591 95 CIKGRGQFSPILLI---CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 95 ~aNL~kHIeNi~kv---fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa 171 (570)
|.++...+..+.+. .++++ .++.||.+..+ +.++ ..+..+++|..+|+.+ .+ +-|+-+.|=.+|-
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~-~~~v----~~~~~~~~a~~~~~~~--~e----~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 112 FSKVPETLLRLRAGRPHHDLPV-ILVGNKSDLAR-SREV----SLEEGRHLAGTLSCKH--IE----TSAALHHNTRELF 179 (195)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCE-EEEEECTTCTT-TCCS----CHHHHHHHHHHTTCEE--EE----EBTTTTBSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCE-EEEeechhccc-cCCc----CHHHHHHHHHHhCCEE--EE----EcCCCCCCHHHHH
Confidence 33455555555442 36787 78999985432 2233 1256778888888643 23 2234555655665
Q ss_pred ccc
Q psy8591 172 NIL 174 (570)
Q Consensus 172 ~~l 174 (570)
+.+
T Consensus 180 ~~l 182 (195)
T 3cbq_A 180 EGA 182 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 110
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=24.09 E-value=1.6e+02 Score=24.25 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=30.7
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
.++++ .+..||.+..+ +.++ ..+.++++|.++|+.+ .+ +-|+-+.|=.+|-+.|
T Consensus 110 ~~~p~-ilv~nK~Dl~~-~~~~----~~~~~~~~~~~~~~~~--~~----~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 110 VQIPI-MLVGNKKDLHM-ERVI----SYEEGKALAESWNAAF--LE----SSAKENQTAVDVFRRI 163 (181)
T ss_dssp --CCE-EEEEECTTCTT-TCCS----CHHHHHHHHHHTTCEE--EE----CCTTSHHHHHHHHHHH
T ss_pred CCCCE-EEEEECccchh-ccee----cHHHHHHHHHHhCCcE--EE----EecCCCCCHHHHHHHH
Confidence 46788 88999995422 2223 2367889999998753 22 1123444445555544
No 111
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=24.07 E-value=55 Score=27.59 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=31.9
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce-eeeCCCCceEeeeccCchhhhccc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF-EVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f-av~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
.++++ .+.+||.+..+. .++ -.+.++++|...|+.+ +++ |+-+.|=.+|-+.|
T Consensus 118 ~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~S-------a~~g~gi~~l~~~l 171 (206)
T 2bov_A 118 ENVPF-LLVGNKSDLEDK-RQV----SVEEAKNRAEQWNVNYVETS-------AKTRANVDKVFFDL 171 (206)
T ss_dssp SCCCE-EEEEECTTCGGG-CCS----CHHHHHHHHHHHTCEEEEEC-------TTTCTTHHHHHHHH
T ss_pred CCCCE-EEEEeccCcccc-ccc----cHHHHHHHHHHhCCeEEEEe-------CCCCCCHHHHHHHH
Confidence 37888 889999955332 222 1267788998888753 222 23444555555555
No 112
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=23.78 E-value=90 Score=25.79 Aligned_cols=37 Identities=5% Similarity=0.067 Sum_probs=24.9
Q ss_pred hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 108 ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 108 vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
..++++ .+..||.+..+ +.++ ..+.++++|.+.|+.+
T Consensus 121 ~~~~p~-ilv~nK~Dl~~-~~~v----~~~~~~~~~~~~~~~~ 157 (183)
T 3kkq_A 121 RESFPM-ILVANKVDLMH-LRKV----TRDQGKEMATKYNIPY 157 (183)
T ss_dssp SSCCCE-EEEEECTTCST-TCCS----CHHHHHHHHHHHTCCE
T ss_pred CCCCcE-EEEEECCCchh-ccCc----CHHHHHHHHHHhCCeE
Confidence 367787 78999995433 2233 2366889999999653
No 113
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=23.75 E-value=71 Score=30.33 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=49.0
Q ss_pred CccccCChHHHHhhhhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceE
Q psy8591 81 PEYTEVSTSTEHQGCIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVV 160 (570)
Q Consensus 81 ~el~eENldaLekG~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~ 160 (570)
....+++.+.|+ .||..|+-.-++ +.++- -+-|= .+|.+..| ..|+|.||.||
T Consensus 102 QvWs~~Df~rLQ---eNliGHl~mqrr-LK~~P-T~FIg---~td~e~~l-------------------Isv~N~sGeV~ 154 (181)
T 3ffv_A 102 QTWSEDDFRRVQ---ENLIGHLVTQKR-LKLPP-TLFIA---TLEEELEV-------------------ISVCNLSGEVC 154 (181)
T ss_dssp CCCSHHHHHHHH---HHHHHHHHHHHH-TTCCC-EEEEE---ECSSTTEE-------------------EEEETTTCCEE
T ss_pred ecCCHHHHHHHH---HHHHHHHHHHHH-hCCCC-cEEEE---EecCCCcE-------------------EEEECCCCeEE
Confidence 445555555554 599999988666 66554 11221 35666777 89999999987
Q ss_pred eeeccCc---hhhhcccCcchhcc
Q psy8591 161 SAVDFGS---GELSNILPGFLVES 181 (570)
Q Consensus 161 s~~~~Gg---~eLa~~l~~f~~~~ 181 (570)
+-.+|- .-||+-|..||...
T Consensus 155 -LE~~G~~~~~vLA~sLaeFL~~L 177 (181)
T 3ffv_A 155 -KETLGTRKRTHLASNLAEFLNQL 177 (181)
T ss_dssp -EEETTSSCEEEEESSHHHHHHHC
T ss_pred -EEeCCCCcceehhhCHHHHHHhC
Confidence 455554 35888888888754
No 114
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=23.48 E-value=36 Score=34.25 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=29.4
Q ss_pred hHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc-eeeeC
Q psy8591 98 GRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF-FEVTN 154 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~-fav~~ 154 (570)
|+.-|+..++ +||.++- --=.|+..=...-+ +.|.++|+++|+. ++|++
T Consensus 82 l~ekI~l~~~-~gV~v~~-GGTlfE~~l~qg~~------~~yl~~~k~lGF~~IEISd 131 (276)
T 1u83_A 82 LEEKISTLKE-HDITFFF-GGTLFEKYVSQKKV------NEFHRYCTYFGCEYIEISN 131 (276)
T ss_dssp HHHHHHHHHH-TTCEEEE-CHHHHHHHHHTTCH------HHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHH-cCCeEeC-CcHHHHHHHHcCcH------HHHHHHHHHcCCCEEEECC
Confidence 6666777666 8888721 11012110011233 8899999999988 56665
No 115
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=23.45 E-value=17 Score=39.33 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=35.9
Q ss_pred hhHHhhhcccc-EEEccCCCCCCCcccccccc------ccccCCCCCCeEEEEEe
Q psy8591 13 RNFYDTLLHIA-YATQPNREYSVSGMEKFFNI------KCRTSGKIPDAVVLVTT 60 (570)
Q Consensus 13 ~~~~~~~l~~D-YVVTEAGFGADLGaEKF~DI------KCR~sGL~PdavVLVAT 60 (570)
+||.+.+...| +.|-..-+|.++|+|+..-+ +||..|. | |++||
T Consensus 272 ~nldeIl~~sDGIMVARGDLgvEi~~e~vp~~Qk~iI~~c~~aGK-P---Vi~AT 322 (520)
T 3khd_A 272 IHFDKILAESDGIMIARGDLGMEISPEKVFLAQKLMISKCNLQGK-P---IITAT 322 (520)
T ss_dssp HTHHHHHHHSSCEEECHHHHTTTSCGGGHHHHHHHHHHHHHHHTC-C---EEECC
T ss_pred HhHHHHHHhCCcEEEccccccccCCHHHHHHHHHHHHHHHHHcCC-C---eEEee
Confidence 58888888888 67777888999999987665 9999995 3 78876
No 116
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=23.27 E-value=1e+02 Score=25.50 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=28.5
Q ss_pred chHHHHHhhhhh---cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 97 KGRGQFSPILLI---CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 97 NL~kHIeNi~kv---fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
++...++.+... -++++ .+.+||.+..+ .++ ..+..+++|...|+.+
T Consensus 105 ~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~~~ 154 (195)
T 1x3s_A 105 KLDNWLNELETYCTRNDIVN-MLVGNKIDKEN--REV----DRNEGLKFARKHSMLF 154 (195)
T ss_dssp THHHHHHHHTTCCSCSCCEE-EEEEECTTSSS--CCS----CHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCcCCCcE-EEEEECCcCcc--ccc----CHHHHHHHHHHcCCEE
Confidence 444445555442 35666 77999995522 223 1266788999988753
No 117
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=23.23 E-value=49 Score=28.27 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=52.6
Q ss_pred ccchhHHHHHHHHHh---CCceeeeCC-CCceEeeeccCchhhhcccCcchhccccccccCCCCccccccccccccceec
Q psy8591 132 VGKLSKHYRQLCLFV---GLFFEVTNP-SGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEYGFPSMLIPSYVV 207 (570)
Q Consensus 132 ~~~~~~~lR~~C~~l---Gv~fav~~~-~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~~y~~~~~~~~~~ 207 (570)
.|-..++++++++++ |+.+.+..- ......+...|-.+++ +.-+..+.+ ....|.|..|.+..+..++
T Consensus 62 ~G~~~~l~~~~~~~~~~pg~~v~~~~~~~~~~~~~l~~g~~D~~------~~~~~~~~~--~~~~~~~~~p~~~~~~~~~ 133 (259)
T 2v25_A 62 KGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAV------IATFTITPE--RKRIYNFSEPYYQDAIGLL 133 (259)
T ss_dssp ESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHHHHTTSCSEE------CSSCBCCHH--HHTTEEECSCSEEEEEEEE
T ss_pred EEeeHHHHHHHHHHhcCCCcceEEEEcCHHHHHHHHhCCCCCEE------EecCccCHH--HHhcCcccccceeCceEEE
Confidence 466668999999999 999887641 1122222333333322 111112222 1235666655555555566
Q ss_pred ccccccccccccccCceeeEEeecch-hhhhhhhhc
Q psy8591 208 SHSKEDVSRDRISSGYTLGVVRTSGT-RMLNALVTD 242 (570)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 242 (570)
.+....+..-.=-.|+++|+.+-+.. .++..+..+
T Consensus 134 ~~~~~~i~~~~dL~g~~i~~~~g~~~~~~~~~~~~~ 169 (259)
T 2v25_A 134 VLKEKKYKSLADMKGANIGVAQAATTKKAIGEAAKK 169 (259)
T ss_dssp EEGGGCCCSGGGCTTCEEEEETTCSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHhCCCEEEEecCCchHHHHHHHHHh
Confidence 55433332111124889998865543 344444433
No 118
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=23.12 E-value=82 Score=25.28 Aligned_cols=47 Identities=13% Similarity=-0.060 Sum_probs=27.0
Q ss_pred chHHHHHhhhh---hcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHh-CCc
Q psy8591 97 KGRGQFSPILL---ICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFV-GLF 149 (570)
Q Consensus 97 NL~kHIeNi~k---vfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~l-Gv~ 149 (570)
++...++.+.. ..++++ .+.+||.+..+. .++ ..+.++++|..+ +..
T Consensus 92 ~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~ 142 (167)
T 1c1y_A 92 DLQDLREQILRVKDTEDVPM-ILVGNKCDLEDE-RVV----GKEQGQNLARQWCNCA 142 (167)
T ss_dssp THHHHHHHHHHHHCCSCCCE-EEEEECTTCGGG-CCS----CHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHHHhhCcCCCcE-EEEEECcccccc-ccC----CHHHHHHHHHHccCCc
Confidence 44444444433 247887 889999954332 222 136677888887 443
No 119
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=23.00 E-value=57 Score=33.29 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=30.7
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
.|..++.+.+|+--..+.+++. ++++++|+++|+.+.+.+
T Consensus 41 ~g~~v~avhvdhglr~~s~~~~------~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 41 PGVALRAIHVHHGLSANADAWV------THCENVCQQWQVPLVVER 80 (433)
T ss_dssp TTCEEEEEEECCSCCSSHHHHH------HHHHHHHHHTTCCEEEEC
T ss_pred CCCeEEEEEEECCCCcccHHHH------HHHHHHHHHcCCcEEEEE
Confidence 5677777888874233445567 899999999999999886
No 120
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=22.81 E-value=31 Score=32.07 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=30.2
Q ss_pred HhhhccccEE--EccCCCCCCCcc--------ccccccccccCCCCCCeEEEEEeehhhhhcC
Q psy8591 16 YDTLLHIAYA--TQPNREYSVSGM--------EKFFNIKCRTSGKIPDAVVLVTTVRALKMHG 68 (570)
Q Consensus 16 ~~~~l~~DYV--VTEAGFGADLGa--------EKF~DIKCR~sGL~PdavVLVATVRALK~HG 68 (570)
.+++.....| =||.||| ||| +|-+.||-|-.. +| .+|+|+.+..++...
T Consensus 21 ~~~L~~G~iva~pTdtvyg--L~~da~n~~Av~rl~~~K~R~~~-kP-l~v~~~~~~~~~~~~ 79 (206)
T 1k7j_A 21 VEIVRKGGVIVYPTDSGYA--LGCKIEDKNAMERICRIRQLPDG-HN-FTLMCRDLSELSTYS 79 (206)
T ss_dssp HHHHHTTCCEEEEETTEEE--EEEETTCHHHHHHHHHHHTCCTT-CC-CEEECSSHHHHHHHB
T ss_pred HHHHHCCCEEEEECCCEEE--EEEeCCCHHHHHHHHHHcCCCCC-CC-EEEEECCHHHHHHHh
Confidence 3444444433 3888877 555 688889999655 34 566777666555443
No 121
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=22.70 E-value=1.2e+02 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=23.7
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeee
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVT 153 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~ 153 (570)
|+.+..+++|.| ..+..+.. +.++++|++.|+.|.+.
T Consensus 82 ~v~vv~is~d~~-~~~~~~~~------~~~~~~~~~~~~~~p~~ 118 (185)
T 2gs3_A 82 GLRILAFPCNQF-GKQEPGSN------EEIKEFAAGYNVKFDMF 118 (185)
T ss_dssp TEEEEEEECCTT-TTCCCSCH------HHHHHHHHHTTCCSEEB
T ss_pred CeEEEEEECccc-CCCCCCCH------HHHHHHHHHcCCCCeee
Confidence 555544555566 32222234 67899999999998776
No 122
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=22.56 E-value=38 Score=28.71 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=28.8
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
++...++.+... -++++ .+.+||.+..+ +.++ ..+.++++|.+.|+.+
T Consensus 111 ~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl~~-~~~v----~~~~~~~~~~~~~~~~ 160 (191)
T 2a5j_A 111 HLTSWLEDARQHSSSNMVI-MLIGNKSDLES-RRDV----KREEGEAFAREHGLIF 160 (191)
T ss_dssp THHHHHHHHHHHSCTTCEE-EEEEECTTCGG-GCCS----CHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEEECcccCC-cccc----CHHHHHHHHHHcCCEE
Confidence 444445444441 36777 78999994422 2233 1356788999988753
No 123
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=22.47 E-value=39 Score=34.70 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=30.9
Q ss_pred cCCCcceeeecCCCC-CCCCCcccccchhHHHHHHHHHhCCceeeeC
Q psy8591 109 CGLQKHRTSKNKTSM-FDVSQPITVGKLSKHYRQLCLFVGLFFEVTN 154 (570)
Q Consensus 109 fGVnvfvVAiNkF~~-~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~ 154 (570)
+|..+..+.+|+--. .+.+++. ++++++|+++|+.+.+.+
T Consensus 45 ~~~~v~avhvdhglrg~~s~~~~------~~v~~~~~~lgi~~~v~~ 85 (464)
T 3a2k_A 45 WKLQVIAAHVDHMFRGRESEEEM------EFVKRFCVERRILCETAQ 85 (464)
T ss_dssp TTCBCEEEEEECTTCTHHHHHHH------HHHHHHHHHTTCEEEEEE
T ss_pred cCCeEEEEEEECCCCccccHHHH------HHHHHHHHHcCCcEEEEE
Confidence 577887888897422 3345666 899999999999998876
No 124
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=22.32 E-value=1.1e+02 Score=25.31 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=34.4
Q ss_pred hchHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhcc
Q psy8591 96 IKGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNI 173 (570)
Q Consensus 96 aNL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~ 173 (570)
.++...++.+... -++++ .+..||.+..+. .++ -.+.++++|..+|+.+ .+ +-|+-+.|=.+|-+.
T Consensus 97 ~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~-~~v----~~~~~~~~~~~~~~~~--~~----~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 97 DNIRNWIRNIEEHASADVEK-MILGNKCDVNDK-RQV----SKERGEKLALDYGIKF--ME----TSAKANINVENAFFT 164 (183)
T ss_dssp HHHHHHHHHHHHHSCTTCEE-EEEEEC--CCSC-CCS----CHHHHHHHHHHHTCEE--EE----CCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCE-EEEEECccCCcc-CcC----CHHHHHHHHHHcCCeE--EE----EeCCCCCCHHHHHHH
Confidence 3444455555441 36777 789999955332 222 1366788999999753 22 123444454455544
Q ss_pred c
Q psy8591 174 L 174 (570)
Q Consensus 174 l 174 (570)
|
T Consensus 165 l 165 (183)
T 2fu5_C 165 L 165 (183)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=22.12 E-value=33 Score=30.55 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=49.8
Q ss_pred CCCCCcccccchhHHHHHHHHH----hC---CceeeeCC-CCceEeeeccCchhhhcccCcchhccccccccCCCCcccc
Q psy8591 124 FDVSQPITVGKLSKHYRQLCLF----VG---LFFEVTNP-SGVVVSAVDFGSGELSNILPGFLVESRQTDESHDMGHFEY 195 (570)
Q Consensus 124 ~Dtd~EI~~~~~~~~lR~~C~~----lG---v~fav~~~-~g~V~s~~~~Gg~eLa~~l~~f~~~~r~~des~~~~~Fe~ 195 (570)
.|.+.++ .|-..++++++|+. +| +.+.+..- .+..+.+...|-.++. +.-+..+.+ ....|.|
T Consensus 33 ~~~~g~~-~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~~~~~~~~l~~g~~D~~------~~~~~~t~~--r~~~~~~ 103 (287)
T 2vha_A 33 YDNQQKV-VGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFE------CGSTTNNVE--RQKQAAF 103 (287)
T ss_dssp ECSSSCE-ESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCSEE------CSSCBCCHH--HHTTCEE
T ss_pred ECCCCCc-ccccHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHCCCeeEE------eccccCCcc--hhhcccc
Confidence 3555555 57777888888876 57 77766531 1222223333333332 111122223 1235566
Q ss_pred ccccccccceecccccccccccccccCceeeEEeecc
Q psy8591 196 GFPSMLIPSYVVSHSKEDVSRDRISSGYTLGVVRTSG 232 (570)
Q Consensus 196 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
.-|.+..+..++.+....+..-.=-.|+++|+++-+.
T Consensus 104 s~p~~~~~~~l~~~~~~~i~sl~dL~g~~v~~~~g~~ 140 (287)
T 2vha_A 104 SDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTSGTT 140 (287)
T ss_dssp EEEEEEEEEEEEEETTSSCCSGGGGTTCEEEEETTSH
T ss_pred cceeeecceEEEEECCCCCCCHHHcCCCEEEEeCCCc
Confidence 5555555555665544332211112488999886543
No 126
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.45 E-value=91 Score=28.85 Aligned_cols=36 Identities=6% Similarity=-0.073 Sum_probs=22.6
Q ss_pred CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 110 GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 110 GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
++|+ .+.+||.+.. +.+++ .++.+.+++.+...|+.
T Consensus 144 ~~pv-i~V~nK~D~~-~~~e~--~~~~~~i~~~l~~~~i~ 179 (274)
T 3t5d_A 144 KVNI-IPLIAKADTL-TPEEC--QQFKKQIMKEIQEHKIK 179 (274)
T ss_dssp TSCE-EEEESSGGGS-CHHHH--HHHHHHHHHHHHHTTCC
T ss_pred cCCE-EEEEeccCCC-CHHHH--HHHHHHHHHHHHHcCCe
Confidence 6788 8899998432 22233 33445567777777776
No 127
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}
Probab=21.44 E-value=1.1e+02 Score=29.89 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=28.1
Q ss_pred hhchHHHHHhhhhhcCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCc
Q psy8591 95 CIKGRGQFSPILLICGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 95 ~aNL~kHIeNi~kvfGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~ 149 (570)
.+.|+++++.+...+|..+.......+.....+. .|.+.+++.|+++|..
T Consensus 297 ~~~i~~~~~~~a~~~g~~~~i~~~~~~p~~~~d~-----~l~~~~~~a~~~~g~~ 346 (408)
T 3n5f_A 297 WKAIAVRAETIAKERNVRVTTERLQEMPPVLCSD-----EVKRAAEAACQKLGYP 346 (408)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEEECCEECCH-----HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCCCCcCCCH-----HHHHHHHHHHHHcCCC
Confidence 3345556665554467665222223332333343 3468899999998865
No 128
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=21.23 E-value=34 Score=36.90 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=40.5
Q ss_pred hHHHHhhhHHhhhc--cccEEEccCC-----------------CCCCCcccccccc--------------c---------
Q psy8591 7 LFLKISRNFYDTLL--HIAYATQPNR-----------------EYSVSGMEKFFNI--------------K--------- 44 (570)
Q Consensus 7 ~~~~~~~~~~~~~l--~~DYVVTEAG-----------------FGADLGaEKF~DI--------------K--------- 44 (570)
+.-.|-+.|.+++. ..|++|.|.| |..++|-|.|+-| |
T Consensus 128 ~~~~i~~~~~~~~~~~~~d~~i~e~~gt~~di~~~~~~~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~ 207 (550)
T 1vco_A 128 ITDEIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVA 207 (550)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECSCTTSSTTHHHHHHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCEEEEECCCChhHhhhHHHHHHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHH
Confidence 34456678888888 8899999998 4456899998877 2
Q ss_pred -cccCCCCCCeEEEE
Q psy8591 45 -CRTSGKIPDAVVLV 58 (570)
Q Consensus 45 -CR~sGL~PdavVLV 58 (570)
-|..|++||.+|+=
T Consensus 208 ~lrs~gi~pd~lvvR 222 (550)
T 1vco_A 208 TLRGVGIQPDILVLR 222 (550)
T ss_dssp HHHHTTCCCSEEEEE
T ss_pred HHhcCCCccCEEEEe
Confidence 38889999987654
No 129
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=21.18 E-value=1.5e+02 Score=24.60 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=29.0
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCcee
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFE 151 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fa 151 (570)
++...++.+... -++++ .+.+||.+..+. .++ .....+++|..+|+.+-
T Consensus 106 ~~~~~~~~i~~~~~~~~p~-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~ 156 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVNK-LLVGNKCDLTTK-KVV----DYTTAKEFADSLGIPFL 156 (196)
T ss_dssp THHHHHHHHHHHSCTTCEE-EEEEECTTCTTT-CCS----CHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEEECcccccc-ccc----CHHHHHHHHHHcCCcEE
Confidence 344444444331 26777 778999954332 222 12567899999997643
No 130
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=21.09 E-value=1.4e+02 Score=24.52 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=29.3
Q ss_pred chHHHHHhhhhh---cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce
Q psy8591 97 KGRGQFSPILLI---CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 97 NL~kHIeNi~kv---fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
++...++.+... .++++ .+.+||.+..+. .++ ..+.++++|..+|+.+
T Consensus 111 ~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 111 NVRNWISQLQMHAYSENPDI-VLCGNKSDLEDQ-RAV----KEEEARELAEKYGIPY 161 (195)
T ss_dssp THHHHHHHHHHHSSSSSCCE-EEEEECTTCGGG-CCS----CHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHhcCCCCCCE-EEEEECcccccc-ccc----CHHHHHHHHHHcCCCE
Confidence 444444444431 46777 889999854321 222 2367889999998753
No 131
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=20.98 E-value=1.2e+02 Score=25.68 Aligned_cols=66 Identities=20% Similarity=0.075 Sum_probs=36.5
Q ss_pred chHHHHHhhhhh--cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 97 KGRGQFSPILLI--CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 97 NL~kHIeNi~kv--fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
++...++.+... -+.++ .+.+||.+..+. .++ ..+.++++|..+|+.+ .+ +-|+-+.|=.+|-+.|
T Consensus 98 ~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~--~~----~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 98 AVQDWSTQIKTYSWDNAQV-LLVGNKCDMEDE-RVV----SSERGRQLADHLGFEF--FE----ASAKDNINVKQTFERL 165 (203)
T ss_dssp HHHHHHHHHHHHSCSSCEE-EEEEECTTCTTS-CCS----CHHHHHHHHHHHTCEE--EE----CBTTTTBSSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEEECcccCcc-ccc----CHHHHHHHHHHCCCeE--EE----EECCCCCCHHHHHHHH
Confidence 444444444441 36777 789999955332 222 2367888999998753 22 1123444444555554
No 132
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=20.86 E-value=28 Score=37.76 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=37.9
Q ss_pred HHhhhHHhhh--ccccEEEccCCCCC------------------CCcccccccc------------------------cc
Q psy8591 10 KISRNFYDTL--LHIAYATQPNREYS------------------VSGMEKFFNI------------------------KC 45 (570)
Q Consensus 10 ~~~~~~~~~~--l~~DYVVTEAGFGA------------------DLGaEKF~DI------------------------KC 45 (570)
.|-+..++.| ...|++|+|.| |+ ++|-|.|+.| .-
T Consensus 122 eik~~i~~~~~~~~~dv~i~eig-gtvgdies~pf~ea~rq~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~L 200 (535)
T 3nva_A 122 QIKDMIRYASKINNAEITLVEIG-GTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQEL 200 (535)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEC-SCTTSGGGHHHHHHHHHHHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCEEEEEeC-CccchhcccHHHHHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHHH
Confidence 4667777777 68899999999 55 5788888887 14
Q ss_pred ccCCCCCCeEEEE
Q psy8591 46 RTSGKIPDAVVLV 58 (570)
Q Consensus 46 R~sGL~PdavVLV 58 (570)
|..|+.||.+|+=
T Consensus 201 rs~GIqPdilvcR 213 (535)
T 3nva_A 201 RRIGIQPDFIVGR 213 (535)
T ss_dssp HHHTCCCSEEEEE
T ss_pred HhCCCCCCEEEEe
Confidence 7789999998763
No 133
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=20.60 E-value=75 Score=25.30 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=13.1
Q ss_pred eeeeCCCCceEeeeccCch
Q psy8591 150 FEVTNPSGVVVSAVDFGSG 168 (570)
Q Consensus 150 fav~~~~g~V~s~~~~Gg~ 168 (570)
+.+.+|.||.|++....++
T Consensus 112 ~~~~DPdG~~iel~~~~~~ 130 (136)
T 2rk0_A 112 LAFRDADNIALEAMLGREG 130 (136)
T ss_dssp EEEECTTCCEEEEEEECTT
T ss_pred EEEECCCCCEEEEEEcCCC
Confidence 5567788887777765554
No 134
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=20.50 E-value=74 Score=27.21 Aligned_cols=18 Identities=0% Similarity=-0.260 Sum_probs=13.5
Q ss_pred ccchhHHHHHHHHHhCCc
Q psy8591 132 VGKLSKHYRQLCLFVGLF 149 (570)
Q Consensus 132 ~~~~~~~lR~~C~~lGv~ 149 (570)
+..+.++++++|++.|+.
T Consensus 138 ~~~~n~~~~~~a~~~~v~ 155 (200)
T 4h08_A 138 LNVRNQIALKHINRASIE 155 (200)
T ss_dssp HHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhhhcceE
Confidence 345667889999998864
No 135
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=20.45 E-value=94 Score=24.89 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=35.4
Q ss_pred hhchHHHHHhhhhhc--CCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCce-eeeCCCCceEeeeccCchhhh
Q psy8591 95 CIKGRGQFSPILLIC--GLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFF-EVTNPSGVVVSAVDFGSGELS 171 (570)
Q Consensus 95 ~aNL~kHIeNi~kvf--GVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~f-av~~~~g~V~s~~~~Gg~eLa 171 (570)
+.++...++.+.+.. ++++ .+..||.+..+. .++ -.+.++++|.+.|+.+ +++ |+-+.|=.+|-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~i-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~S-------a~~g~gi~~l~ 160 (170)
T 1r2q_A 94 FARAKNWVKELQRQASPNIVI-ALSGNKADLANK-RAV----DFQEAQSYADDNSLLFMETS-------AKTSMNVNEIF 160 (170)
T ss_dssp HHHHHHHHHHHHHHSCTTCEE-EEEEECGGGGGG-CCS----CHHHHHHHHHHTTCEEEECC-------TTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE-EEEEECccCccc-ccc----CHHHHHHHHHHcCCeEEEEe-------CCCCCCHHHHH
Confidence 344555555555422 4444 556699854322 222 1256788999888753 333 23444545555
Q ss_pred ccc
Q psy8591 172 NIL 174 (570)
Q Consensus 172 ~~l 174 (570)
+.|
T Consensus 161 ~~i 163 (170)
T 1r2q_A 161 MAI 163 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 136
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}
Probab=20.32 E-value=2.2e+02 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=27.1
Q ss_pred hchHHHHHhhhhhcCCCcceeeecCCCCC--CCCCcccccchhHHHHHHHHHhCCce
Q psy8591 96 IKGRGQFSPILLICGLQKHRTSKNKTSMF--DVSQPITVGKLSKHYRQLCLFVGLFF 150 (570)
Q Consensus 96 aNL~kHIeNi~kvfGVnvfvVAiNkF~~~--Dtd~EI~~~~~~~~lR~~C~~lGv~f 150 (570)
..|+++++.+...+|..+.......+... |.+.+ |.+.+++.|+++|+..
T Consensus 283 ~~i~~~~~~~a~~~g~~~~i~~~~~~p~~~~~~d~~-----l~~~~~~~~~~~g~~~ 334 (396)
T 3rza_A 283 KHMTDVFETTASELGGKAEVTVEQSYPGFKINDNEA-----VVKIAQESARNLGLSA 334 (396)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEECCEECCTTSH-----HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEeccCCcccCCCcH-----HHHHHHHHHHHcCCCc
Confidence 34455555554446665522222223222 33443 4688999999988654
No 137
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=20.28 E-value=78 Score=29.54 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=34.2
Q ss_pred hHHHHHhhhhhcCCCcceeeec---CCCCCCCCCcccccchhHHHHHHHHHhCCceeee
Q psy8591 98 GRGQFSPILLICGLQKHRTSKN---KTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVT 153 (570)
Q Consensus 98 L~kHIeNi~kvfGVnvfvVAiN---kF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~ 153 (570)
.++.|+.|+. .|.|+.++.++ .| ..|.-+.+ +.+-++|.+.|+.+-|-
T Consensus 33 ~~~~~~~i~~-~G~N~VRi~~~~~~~~-~~~~~~~l------d~~v~~a~~~Gi~Vild 83 (294)
T 2whl_A 33 ASTAIPAIAE-QGANTIRIVLSDGGQW-EKDDIDTI------REVIELAEQNKMVAVVE 83 (294)
T ss_dssp HHHHHHHHHH-TTCSEEEEEECCSSSS-CCCCHHHH------HHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHHH-cCCCEEEEEecCCCcc-CccHHHHH------HHHHHHHHHCCCEEEEE
Confidence 3467888888 99999999987 46 22222223 67779999999987553
No 138
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=20.13 E-value=1.1e+02 Score=26.33 Aligned_cols=54 Identities=13% Similarity=-0.051 Sum_probs=31.1
Q ss_pred cCCCcceeeecCCCCCCCCCcccccchhHHHHHHHHHhCCceeeeCCCCceEeeeccCchhhhccc
Q psy8591 109 CGLQKHRTSKNKTSMFDVSQPITVGKLSKHYRQLCLFVGLFFEVTNPSGVVVSAVDFGSGELSNIL 174 (570)
Q Consensus 109 fGVnvfvVAiNkF~~~Dtd~EI~~~~~~~~lR~~C~~lGv~fav~~~~g~V~s~~~~Gg~eLa~~l 174 (570)
.++++ .+.+||.+..+. .++ ..+.++++|...|+.+ .+ +-|+-+.|=.+|-+.|
T Consensus 116 ~~~pi-ilv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~--~~----~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 116 NEAPI-VVCANKIDIKNR-QKI----SKKLVMEVLKGKNYEY--FE----ISAKTAHNFGLPFLHL 169 (218)
T ss_dssp SSSCE-EEEEECTTCC-----C----CHHHHHHHTTTCCCEE--EE----EBTTTTBTTTHHHHHH
T ss_pred CCCCE-EEEEECCCCccc-ccc----CHHHHHHHHHHcCCcE--EE----EecCCCCCHHHHHHHH
Confidence 46787 789999955332 222 2356778888887752 22 2234555666666665
No 139
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=20.07 E-value=1.6e+02 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=16.8
Q ss_pred hchHHHHHhhhhh-----cCCCcceeeecCCCC
Q psy8591 96 IKGRGQFSPILLI-----CGLQKHRTSKNKTSM 123 (570)
Q Consensus 96 aNL~kHIeNi~kv-----fGVnvfvVAiNkF~~ 123 (570)
.++...+..+... .++++ .+.+||.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 138 (190)
T 2h57_A 107 VVAKEELDTLLNHPDIKHRRIPI-LFFANKMDL 138 (190)
T ss_dssp HHHHHHHHHHHHSTTTTTSCCCE-EEEEECTTS
T ss_pred HHHHHHHHHHHhChhhccCCCeE-EEEEeCcCc
Confidence 3444455554442 47788 789999954
No 140
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=20.00 E-value=1.1e+02 Score=27.84 Aligned_cols=34 Identities=6% Similarity=-0.127 Sum_probs=20.1
Q ss_pred ccccEEEccCCCCCCCccccccccccccCCCCCCeEEEEEee
Q psy8591 20 LHIAYATQPNREYSVSGMEKFFNIKCRTSGKIPDAVVLVTTV 61 (570)
Q Consensus 20 l~~DYVVTEAGFGADLGaEKF~DIKCR~sGL~PdavVLVATV 61 (570)
.++||||-.++=|.+.-....+ . .-|.+++|++.
T Consensus 110 ~~yD~iiiD~pp~~~~~~~~~l----~----~aD~viiv~~~ 143 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPLTLNAL----A----AAEGVVVPVQA 143 (257)
T ss_dssp TTCSEEEEECCSSCCHHHHHHH----H----HCSEEEEEEES
T ss_pred cCCCEEEEeCCCCCCHHHHHHH----H----HCCeEEEEecC
Confidence 5789999988755432211111 1 24778888743
Done!