RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8591
(570 letters)
>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional.
Length = 587
Score = 94.0 bits (234), Expect = 4e-20
Identities = 35/60 (58%), Positives = 43/60 (71%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 95
G EKF+N+KCR SG PD V+V T+RALKMHGGGP VV G+PL EYT+ + +GC
Sbjct: 328 GFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGC 387
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 89.9 bits (224), Expect = 5e-19
Identities = 32/42 (76%), Positives = 32/42 (76%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQ 77
G EKFFNIKCR SG PDAVVLV TVRALKMHGG P V G
Sbjct: 290 GAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKVTLGL 331
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.
Length = 557
Score = 88.3 bits (220), Expect = 2e-18
Identities = 28/36 (77%), Positives = 29/36 (80%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 71
G EKFF+IKCR SG PDAVVLV TVRALKMHGG
Sbjct: 306 GAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVA 341
>gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase.
Length = 637
Score = 84.8 bits (210), Expect = 3e-17
Identities = 35/60 (58%), Positives = 40/60 (66%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPLKPEYTEVSTSTEHQGC 95
G EKF NIKCR SG P V+V TVRALKMHGGGP+VV+G+PL YT + GC
Sbjct: 377 GTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPLDHAYTTENVELVEAGC 436
>gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase;
Provisional.
Length = 625
Score = 78.7 bits (194), Expect = 3e-15
Identities = 31/42 (73%), Positives = 33/42 (78%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQ 77
G EKFFNIKCRTSG PDA VLV TVRALK HGG VV+G+
Sbjct: 372 GCEKFFNIKCRTSGLKPDAAVLVATVRALKFHGGVEPVVAGK 413
>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide
transport and metabolism].
Length = 554
Score = 78.1 bits (193), Expect = 4e-15
Identities = 29/36 (80%), Positives = 31/36 (86%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 71
G EKFF+IKCR+SG PDAVVLV TVRALKMHGG P
Sbjct: 304 GAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVP 339
>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional.
Length = 557
Score = 75.6 bits (187), Expect = 2e-14
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGP 71
G EKF +IKCR +G PDAVV+V TVRALKMHGG
Sbjct: 307 GAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVA 342
>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional.
Length = 578
Score = 68.1 bits (167), Expect = 6e-12
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 36 GMEKFFNIKCRTSGKIPDAVVLVTTVRALKMHGGGPSVVSGQPL 79
G EKF NIK R SGK PD VLV T+RALK + G + GQ L
Sbjct: 320 GFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLRPGQAL 363
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 37.4 bits (86), Expect = 0.019
Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 6/142 (4%)
Query: 296 PKVQSTIPTKVSKVQSTIPIKVTKVQSTIPTKVPKVQSTIPTKVPKVQSIISTKVPKVQS 355
P S IP + + K+ ++ V ++ P P V S
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPA-TPSSSLPTDIGNKAVVS 349
Query: 356 TIPTKVSKVQSTIPIKVTKVQS----IIPTKVPKVQSTIPTKVPKVQSIIPTKVPKVQSI 411
+ K ++ +P V IPT VP IP+ V + PT++
Sbjct: 350 S-AKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLA 408
Query: 412 IPTKVPKVQSIIPTKVPKVQSI 433
P K K + + T ++
Sbjct: 409 SPRKKMKREKLPVTFGALDDTL 430
Score = 37.4 bits (86), Expect = 0.021
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 8/136 (5%)
Query: 322 STIPTKVPKVQSTIPTKVPKVQSIISTKVPKVQSTIPTKVSKVQSTIPIKV-TKVQSIIP 380
S IP + K+ +++ V ++ P S S++P + K
Sbjct: 295 SAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPS---SSLPTDIGNKAVVSSA 351
Query: 381 TKVPKVQSTIPTKVPKVQS----IIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSIIPT 436
K + +P P V IPT VP IP+ V + PT++ P
Sbjct: 352 KKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFLASPR 411
Query: 437 KVPKVQSTIPTKVSKV 452
K K + T +
Sbjct: 412 KKMKREKLPVTFGALD 427
Score = 37.0 bits (85), Expect = 0.027
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 17/150 (11%)
Query: 351 PKVQSTIPTKVSKVQSTIPIKVTKVQSIIPTKVPKVQSTIPTKVPKVQSIIPTKVPKVQS 410
P S IP + + K+ +++ V ++ P S +PT +
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATP---SSSLPTDIGNKAV 347
Query: 411 IIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQS----TIPTKVSKVQSTIPIKVTKVQSI 466
+ K + +P P V IPT V IP V +
Sbjct: 348 VSS----------AKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLV 397
Query: 467 IPTKVPKVQSTIPTKVPKVQSTIPTKVPKV 496
PT++ P K K + T
Sbjct: 398 APTEINPSFLASPRKKMKREKLPVTFGALD 427
Score = 34.7 bits (79), Expect = 0.14
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 406 PKVQSIIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSTIPTKVSKVQSTIPIKV-TKVQ 464
P S IP + K+ +++ V ++ P S S++P + K
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPS---SSLPTDIGNKAV 347
Query: 465 SIIPTKVPKVQSTIPTKVPKVQS----TIPTKVPKVQSTIPTKVPKVQSTIPTKVP 516
K + +P P V IPT VP IP+ V PT++
Sbjct: 348 VSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEIN 403
Score = 33.5 bits (76), Expect = 0.35
Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 10/144 (6%)
Query: 384 PKVQSTIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSIIPTKV--PKV 441
P S IP + K+ +++ V ++ P S +PT + V
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATP---SSSLPTDIGNKAV 347
Query: 442 QSTIPTKVSKVQSTIPIKVTKVQS----IIPTKVPKVQSTIPTKVPKVQSTIPTKVPKVQ 497
S+ K ++ +P V IPT VP IP+ V PT++
Sbjct: 348 VSS-AKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSF 406
Query: 498 STIPTKVPKVQSTIPTKVPKVQSI 521
P K K + T ++
Sbjct: 407 LASPRKKMKREKLPVTFGALDDTL 430
Score = 33.1 bits (75), Expect = 0.50
Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 395 PKVQSIIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSTIPTKV-SKVQ 453
P S IP + K+ +++ V ++ P S++PT + +K
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATP---SSSLPTDIGNKAV 347
Query: 454 STIPIKVTKVQSIIPTKVPKVQS----TIPTKVPKVQSTIPTKVPKVQSTIPTKVPKVQS 509
+ K + +P P V IPT VP IP+ V PT++
Sbjct: 348 VSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPTEINPSFL 407
Query: 510 TIPTKVPKVQSIFV 523
P K K + + V
Sbjct: 408 ASPRKKMKREKLPV 421
Score = 30.0 bits (67), Expect = 3.8
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 267 STIPTKV-SKVQSTIPTKVPKVQSIIPTKVPKVQS----TIPTKVSKVQSTIPIKVTKVQ 321
S++PT + +K + K + +P P V IPT V IP V
Sbjct: 336 SSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPG 395
Query: 322 STIPTKVPKVQSTIPTKVPKVQSIISTKVPKV 353
PT++ P K K + + T
Sbjct: 396 LVAPTEINPSFLASPRKKMKREKLPVTFGALD 427
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 33.6 bits (76), Expect = 0.24
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 302 IPTKVSKVQSTIPIKV---TKVQSTIPTKVPKVQSTIPTKVP---KVQSIISTKVPKVQS 355
IP ++ QST P K K Q + P K P + K + P +
Sbjct: 11 IPGPANRSQSTTPSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRSA 70
Query: 356 TIPTKVSKVQSTIPIKVTKVQSIIPTKVPKVQSTIPTKVPKVQSIIPTKVPKVQSIIPTK 415
T P +++K S+ + Q+ P++ PT+ SI+P + + T
Sbjct: 71 TPPARLAKTPSS-----SSSQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTS 125
Query: 416 VPKVQSIIPTKVPKVQSIIPTKVPKVQS-TIPTKVSKVQSTIP 457
P + + P ++P +Q+ P +SK S+ P
Sbjct: 126 SPARALLASSGSQHKTQKSPVRIPFMQNPAKPPPLSKNASSRP 168
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 34.2 bits (78), Expect = 0.26
Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 375 VQSIIPTKVPKVQSTIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSIIPTKVPKVQSII 434
V + T+ P VQ TI V P V + + P + V +
Sbjct: 1128 VIKSVVTQAPVVQVTIS-----VAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVAE-V 1181
Query: 435 PTKVPKVQSTIPTKVSKVQSTIPIKVTKVQSIIPTKV 471
P VP QS S Q+ P V +V
Sbjct: 1182 PIAVPVQQSVDYMP-SVAQAAAP--QASVNDSAIQQV 1215
Score = 31.5 bits (71), Expect = 1.6
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 276 VQSTIPTKVPKVQSIIPTKVPKVQSTIPTKVSKVQSTIPIKVTKVQSTIPTKVPKVQSTI 335
S + T+ P ++S++ T+ P VQ TI V P+ V + + P
Sbjct: 1118 KLSPLATQAPVIKSVV-TQAPVVQVTIS-----VAPAAPVLPAVVSPPVVSAAPAQSVAT 1171
Query: 336 PTKVPKVQSIISTKVPKVQSTIPTKVSKVQSTIPIKVTKVQSIIPTKV 383
+ V + VP QS S Q+ P V +V
Sbjct: 1172 AVAMAPVAE-VPIAVPVQQSVDYMP-SVAQAAAP--QASVNDSAIQQV 1215
Score = 30.7 bits (69), Expect = 2.9
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 331 VQSTIPTKVPKVQSIISTKVPKVQSTIPTKVSKVQSTIPIKVTKVQSIIPTKVPKVQ--- 387
S + T+ P ++S++ T+ P VQ TI V P+ V + + P
Sbjct: 1118 KLSPLATQAPVIKSVV-TQAPVVQVTIS-----VAPAAPVLPAVVSPPVVSAAPAQSVAT 1171
Query: 388 -------STIPTKVPKVQSIIPTKVPKVQSIIP 413
+ +P VP QS+ Q+ P
Sbjct: 1172 AVAMAPVAEVPIAVPVQQSVDYMPS-VAQAAAP 1203
>gnl|CDD|236407 PRK09198, PRK09198, putative nicotinate phosphoribosyltransferase;
Provisional.
Length = 463
Score = 32.9 bits (76), Expect = 0.52
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 128 QPITVGKLSKHYRQLCLFVGLFFEVT--NPSGVVVSAVDFGS 167
P TV +S Y+QL + E T + + DFG+
Sbjct: 142 YPSTVATISWEYKQLIRQ---YLEKTADDLDFLPFQLHDFGA 180
>gnl|CDD|151630 pfam11188, DUF2975, Protein of unknown function (DUF2975). This
family of proteins have no known function. Some members
are annotated as membrane proteins however this cannot
be confirmed.
Length = 93
Score = 30.2 bits (69), Expect = 0.73
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 147 GLFFEVTNPSGVVVSAVDFGSGELSNILPGFLV 179
L NP G + ++ GS +L +L G L+
Sbjct: 41 SLALTFDNPPGQRMLSISLGSADLYLLLVGLLI 73
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 31.1 bits (70), Expect = 1.6
Identities = 13/83 (15%), Positives = 23/83 (27%)
Query: 316 KVTKVQSTIPTKVPKVQSTIPTKVPKVQSIISTKVPKVQSTIPTKVSKVQSTIPIKVTKV 375
K T+ + K + T TK + + V + +K K
Sbjct: 11 KTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKT 70
Query: 376 QSIIPTKVPKVQSTIPTKVPKVQ 398
+S+ V K +V
Sbjct: 71 ESVKKESVAKKTVKKEAVSAEVF 93
>gnl|CDD|114726 pfam06020, Roughex, Drosophila roughex protein. This family
consists of several roughex (RUX) proteins specific to
Drosophila species. Roughex can influence the
intracellular distribution of cyclin A and is therefore
defined as a distinct and specialised cell cycle
inhibitor for cyclin A-dependent kinase activity. Rux is
though to regulate the metaphase to anaphase transition
during development.
Length = 334
Score = 30.4 bits (68), Expect = 2.6
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 258 DDDDDDDEQSTIPTKVSKVQSTIPTK--VPKVQSIIPTKVPKVQSTIPTKVSKVQSTIPI 315
DD++D +E S PT V+ T+ T+ + + P +P+V+ P ++
Sbjct: 229 DDEEDTEEDSPPPTARRGVRRTLFTEENTQEEEDADPDPIPEVEQEQPAPQQAEETAREA 288
Query: 316 KVTKVQSTIPTKVPKVQSTIPTKVPKVQSIISTKVPKVQSTIPTKV 361
V P + S P K + Q+ +VP ++ P ++
Sbjct: 289 VNIPVDLPTPLETTNFSSYTPRK--RQQTTNGNEVPPKRTPGPQRM 332
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 29.9 bits (67), Expect = 3.5
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)
Query: 321 QSTIPTKVPKVQSTIPTKVPKVQSIISTKVPKVQSTIPTKVSKVQSTIPIKVTKVQSIIP 380
++ +P + ST PT+ + + + +VQ + + Q+ + V S +P
Sbjct: 71 NTSQDLSLPPISST-PTQGQEPLAQDGQQRVEVQGDLNNAAVQPQNLSQLNNVAVTSTLP 129
Query: 381 TKVPKVQSTIPTKVPKVQSIIPTKVPKVQSII-PTKVPKVQSIIPTKVPKVQSIIPTKVP 439
T+ V VP + T+ + Q++ P PK KVQ+ P + P
Sbjct: 130 TEPATVAPVRNASVPTAERPAITRPVRAQAVSEPAVEPKAAKTATATEAKVQTASPAQTP 189
Query: 440 KVQST 444
Sbjct: 190 ATPPA 194
Score = 29.1 bits (65), Expect = 5.3
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 441 VQSTIPTKVSKVQSTIPIKVTKVQSIIPTKVPKVQSTI-PTKVPKVQSTIPTKVPKVQST 499
V ST+PT+ + V V + T+ + Q+ P PK T KVQ+
Sbjct: 124 VTSTLPTEPATVAPVRNASVPTAERPAITRPVRAQAVSEPAVEPKAAKTATATEAKVQTA 183
Query: 500 IPTKVPKVQST 510
P + P
Sbjct: 184 SPAQTPATPPA 194
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.362
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,387,854
Number of extensions: 2379708
Number of successful extensions: 1885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 96
Length of query: 570
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 468
Effective length of database: 6,413,494
Effective search space: 3001515192
Effective search space used: 3001515192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.2 bits)