BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8593
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412
OS=Drosophila melanogaster GN=POL PE=4 SV=1
Length = 1237
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 80 ELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQN--NRLKRLKIKLFPYQ 137
ELA F Y+YG ++ V+TDH+PL L+ + N ++L R++++L Y
Sbjct: 662 ELAAIHWAIIHFRPYIYG-KHFTVKTDHRPLTY-----LFSMVNPSSKLTRIRLELEEYN 715
Query: 138 FELKYLPGKYMHIAELADYLSRNLL--VKNVQEDIL 171
F ++YL GK H+ AD LSR + +K++ +IL
Sbjct: 716 FTVEYLKGKDNHV---ADALSRITIKELKDITGNIL 748
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1003
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 94 YVYGHRNIVVQTDHQPL-LAINKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAE 152
Y+YG I V TDHQPL A+ ++ N +LKR K ++ Y EL Y PGK +
Sbjct: 495 YLYGAGTIKVYTDHQPLTFALGNRNF----NAKLKRWKARIEEYNCELIYKPGKSNVV-- 548
Query: 153 LADYLSR 159
AD LSR
Sbjct: 549 -ADALSR 554
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1058
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 80 ELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQ--NNRLKRLKIKLFPYQ 137
EL F +Y+ G R+ + +DHQPL LY+++ N++L R ++KL +
Sbjct: 551 ELLAIVWATKTFRHYLLG-RHFEISSDHQPLSW-----LYRMKDPNSKLTRWRVKLSEFD 604
Query: 138 FELKYLPGKYMHIAELADYLSR 159
F++KY+ GK + AD LSR
Sbjct: 605 FDIKYIKGKENCV---ADALSR 623
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy
OS=Drosophila melanogaster GN=pol PE=4 SV=1
Length = 1035
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 94 YVYGHRNIVVQTDHQPL-LAINKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAE 152
++YG R I + TDHQPL A+ ++ N ++KR K + + ++ Y PGK +A+
Sbjct: 551 FLYGSREINIFTDHQPLTFAVADRN----TNAKIKRWKSYIDQHNAKVFYKPGKENFVAD 606
Query: 153 LADYLSRNLLVKNVQED 169
+ N L Q D
Sbjct: 607 ALSRQNLNALQNEPQSD 623
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 98 HRNIVVQTDHQPLLAINKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAELADYL 157
H N +V+ D + + + + + N++L R PYQFE+K+L GK LAD+L
Sbjct: 1747 HTNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGK---DNILADFL 1803
Query: 158 SR 159
SR
Sbjct: 1804 SR 1805
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 98 HRNIVVQTDHQPLLAINKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAELADYL 157
H N +V+ D + + + + + N++L R PYQFE+K+L GK LAD+L
Sbjct: 1746 HTNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGK---DNILADFL 1802
Query: 158 SR 159
SR
Sbjct: 1803 SR 1804
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-1 PE=4 SV=1
Length = 1333
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 105 TDHQPLLAINKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAELADYLSR 159
TDH+ L+ + + +N RL R ++ L + FE+ Y PG HI AD LSR
Sbjct: 781 TDHRNLIG-RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHI---ADALSR 831
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-7 PE=4 SV=1
Length = 1333
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 105 TDHQPLLA--INKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAELADYLSR 159
TDH+ L+ N+ + +N RL R ++ L + FE+ Y PG HI AD LSR
Sbjct: 781 TDHRNLIGRITNESE---PENKRLARWQLFLQDFNFEINYRPGSANHI---ADALSR 831
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 105 TDHQPLLAINKKDLYKIQNNRLKRLKIKLFPYQFELKYLPGKYMHIAELADYLSR 159
TDH+ L+ + + +N RL R ++ L + FE+ Y PG HI AD LSR
Sbjct: 781 TDHRNLIG-RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHI---ADALSR 831
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,721,924
Number of Sequences: 539616
Number of extensions: 2511937
Number of successful extensions: 7491
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7484
Number of HSP's gapped (non-prelim): 15
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)