Query psy8593
Match_columns 204
No_of_seqs 243 out of 1123
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:45:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rw3_A POL polyprotein; RNA an 99.7 5.3E-19 1.8E-23 161.9 -6.6 130 7-139 287-452 (455)
2 2zd1_B P51 RT; P51/P66, hetero 99.1 2.3E-12 7.7E-17 117.8 -2.6 107 7-115 263-404 (428)
3 1mu2_A HIV-2 RT; HIV-2 reverse 98.6 1.3E-09 4.4E-14 102.2 -4.6 121 7-130 263-425 (555)
4 2zd1_A Reverse transcriptase/r 98.4 2.8E-08 9.7E-13 93.1 0.5 107 8-115 266-406 (557)
5 2ehg_A Ribonuclease HI; RNAse 97.5 7.3E-05 2.5E-09 57.8 3.6 85 73-162 45-132 (149)
6 3hst_B Protein RV2228C/MT2287; 97.0 0.00059 2E-08 51.6 4.4 82 74-161 44-130 (141)
7 3u3g_D Ribonuclease H, RNAse H 97.0 0.0006 2.1E-08 51.2 3.9 80 75-160 44-133 (140)
8 2qkb_A Ribonuclease H1, HS-RNA 96.1 0.0075 2.6E-07 46.8 5.2 83 74-161 48-148 (154)
9 2e4l_A Ribonuclease HI, RNAse 95.1 0.011 3.8E-07 46.3 2.7 83 75-164 45-145 (158)
10 2kq2_A Ribonuclease H-related 95.0 0.0093 3.2E-07 46.3 2.1 82 75-163 49-136 (147)
11 3qio_A GAG-POL polyprotein; RN 95.0 0.016 5.4E-07 45.3 3.3 79 75-162 48-145 (150)
12 1jl1_A Ribonuclease HI; RNAse 94.7 0.015 5E-07 45.4 2.5 82 75-163 43-142 (155)
13 1ril_A Ribonuclease H; hydrola 94.4 0.011 3.9E-07 46.8 1.1 83 74-163 46-147 (166)
14 3h08_A RNH (ribonuclease H); R 94.2 0.013 4.6E-07 44.8 1.3 80 75-161 43-141 (146)
15 2zd1_A Reverse transcriptase/r 93.8 0.1 3.5E-06 48.5 6.6 76 75-160 475-556 (557)
16 3p1g_A Xenotropic murine leuke 92.5 0.08 2.7E-06 42.1 3.3 79 75-161 62-153 (165)
17 1mu2_A HIV-2 RT; HIV-2 reverse 89.0 0.23 7.8E-06 46.1 3.2 76 75-160 472-553 (555)
18 2lsn_A Reverse transcriptase; 88.3 0.31 1.1E-05 38.7 3.2 75 79-159 59-158 (165)
19 1zbf_A Ribonuclease H-related 58.4 8.4 0.00029 29.5 3.5 39 74-115 49-87 (142)
20 4htu_A Ribonuclease H, RNAse H 47.9 10 0.00035 29.1 2.4 37 75-114 44-80 (134)
No 1
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=99.66 E-value=5.3e-19 Score=161.93 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=92.2
Q ss_pred ccchhHHHHHHHHhhcCCCcccch-------hhhhchhhhhhhhhhhHH----------------------------hhh
Q psy8593 7 ILRYDQFLIAKISTIRNTQSAETA-------GEKCSALDQHFEFRLITM----------------------------QLI 51 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~c~~~~~~~~~~l~~~----------------------------q~~ 51 (204)
.+.|||+|++.++.+..|...+.. .+.|+.+++.++..+... |..
T Consensus 287 ~~~y~r~fi~~~~~~~~pL~~llkk~~~~~W~~~~~~af~~lK~~l~~~pvL~~p~~~~~~~l~~DAS~~~~gavL~q~~ 366 (455)
T 1rw3_A 287 TAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKL 366 (455)
T ss_dssp TTCCCSSCCCCCGGGCCTTCC--------CCCCCCSSSCCHHHHHTCSSCCSCCSSSCCTTSCEEEEEECSSSBEECCBC
T ss_pred cchHHHHHHhhhhhhcccHHHHhcCCCCcCchHHHHHHHHHHHHHhhcCcccccCCCCCcEEEEEeccCCcceeEEEEec
Confidence 467999999999998888876553 356666666655554444 333
Q ss_pred cCCCcchhhhHhhhccchhhhcCChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccccccchhHHHHHHH
Q psy8593 52 GSAQRDLFFIIFYKLGHAFSTSLAIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQNNRLKRLKI 131 (204)
Q Consensus 52 ~~~~~~~~~~~~~k~~~~~~~~Ys~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~~k~~~~Rl~RW~~ 131 (204)
++..+++.|+ +.+++ ..+.+|+++|||++||++|+++|++||.| ++|+|+|||+.+.++.++...-..++|++||+.
T Consensus 367 ~~~~~~i~y~-Sk~l~-~~e~~ys~~ekEllAi~~a~~~~~~yl~g-~~~~v~tDh~~~~~l~~~~~~~~~~~Rl~rW~~ 443 (455)
T 1rw3_A 367 GPWRRPVAYL-SKKLD-PVAAGWPPCLRMVAAIAVLTKDAGKLTMG-QPLVIKAPHAVEALVKQPPDRWLSNARMTHYQA 443 (455)
T ss_dssp TTTTCCCCCC-CBCSC-SSCSSSCCSSHHHHHHHHHHHHHHGGGCS-SCEEEECSSCTTTTSSSTTTTTCCCCCCSCCCC
T ss_pred CCcEEEEEEE-cccCC-ccccccchHHHHHHHHHHHHHHHHHHcCC-CcEEEEecChHHHHhCCCccccccchHHHHHHH
Confidence 3333444432 33343 44789999999999999999999999999 999999999855555443222226789999999
Q ss_pred Hhc-CCceE
Q psy8593 132 KLF-PYQFE 139 (204)
Q Consensus 132 ~L~-~yd~~ 139 (204)
.|+ .||++
T Consensus 444 ~L~e~~~i~ 452 (455)
T 1rw3_A 444 LLLDTDRVQ 452 (455)
T ss_dssp CCCCCCSSS
T ss_pred HhCcCCCeE
Confidence 999 57765
No 2
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=99.12 E-value=2.3e-12 Score=117.78 Aligned_cols=107 Identities=7% Similarity=-0.149 Sum_probs=78.0
Q ss_pred ccchhHHHHHHHH-----hhcCCC----cccchhhhhchhhhhhhhhhhHHhhhcCCCcchhhhH---------------
Q psy8593 7 ILRYDQFLIAKIS-----TIRNTQ----SAETAGEKCSALDQHFEFRLITMQLIGSAQRDLFFII--------------- 62 (204)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~c~~~~~~~~~~l~~~q~~~~~~~~~~~~~--------------- 62 (204)
.+.|||+|++.++ .+.... ..-.++++|+.+|+.++..|...+++...+....+++
T Consensus 263 ~~~yyrrFi~~~s~~pL~~llkk~~~~~~~~~Wt~~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~g~~g~vl~ 342 (428)
T 2zd1_B 263 KLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIY 342 (428)
T ss_dssp HHHHHTTTCTTCCCHHHHHTTCSCCCTTCEECCCHHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEETTEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHccCCCCCCeecCCHHHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCCCcEEEEEe
Confidence 3679999998776 233333 2356779999999999988877766443222222221
Q ss_pred --------hhhccchhhhcCChhHHHHHH-HHHHHHHHHHhhcCc--cceecccCCcchhHhhh
Q psy8593 63 --------FYKLGHAFSTSLAIPRDELAG-FRSEATEFCYYVYGH--RNIVVQTDHQPLLAINK 115 (204)
Q Consensus 63 --------~~k~~~~~~~~Ys~~EkEllA-Iv~al~kfr~yL~G~--~~f~V~TDHk~L~~l~~ 115 (204)
+.+++ .+.+|++.|+|+|| ||+|+++||+||.|. ..|+++|||+.+.|+.+
T Consensus 343 q~~~~~~~s~~~~--~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~~~~ 404 (428)
T 2zd1_B 343 QEPFKNLKTGKYA--RMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTE 404 (428)
T ss_dssp SSTTCEEEEEEEE--CCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHHHHH
T ss_pred cCCCceeeecccc--hhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHHHHh
Confidence 11222 47899999999999 999999999999992 25788999999999875
No 3
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.58 E-value=1.3e-09 Score=102.20 Aligned_cols=121 Identities=14% Similarity=0.024 Sum_probs=83.5
Q ss_pred ccchhHHHHHHHH-----hhcCCC----cccchhhhhchhhhhhhhhhhHHhhhcCCCcchhhhHhhh------------
Q psy8593 7 ILRYDQFLIAKIS-----TIRNTQ----SAETAGEKCSALDQHFEFRLITMQLIGSAQRDLFFIIFYK------------ 65 (204)
Q Consensus 7 ~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~c~~~~~~~~~~l~~~q~~~~~~~~~~~~~~~k------------ 65 (204)
.+.|||+|++.++ .+.... ..-.++++|+.+|+.++..|.+.+++...+....|+++..
T Consensus 263 ~~~~~rrfi~~~~~~pL~~llk~~~~~~~~~~wt~~~~~af~~lK~~L~~~p~L~~p~~~~~~~l~~das~~ga~g~vl~ 342 (555)
T 1mu2_A 263 VLNWAAQLYPGIKTKHLCRLISGKMTLTEEVQWTELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIH 342 (555)
T ss_dssp HHHHHHHHSTTCCCHHHHTTSCSSSCTTCBCCCCHHHHHHHHHHHHHHSCCEEEECBCTTSCCEEEEEECSSSCEEEEEE
T ss_pred hhhhhhhccCccchHHHHHHhccCCCCCCcccCCHHHHHHHHHHHHHHhhCccccccCCCCCEEEEEecCCCCcEEEEEe
Confidence 3679999998874 232332 4566779999999999998888876554443333322111
Q ss_pred -ccc-------hhhhcCChhHHHHHH-HHHHHHHHHHhhcCccc--eecc----------cCCcchhHhhhccccccchh
Q psy8593 66 -LGH-------AFSTSLAIPRDELAG-FRSEATEFCYYVYGHRN--IVVQ----------TDHQPLLAINKKDLYKIQNN 124 (204)
Q Consensus 66 -~~~-------~~~~~Ys~~EkEllA-Iv~al~kfr~yL~G~~~--f~V~----------TDHk~L~~l~~k~~~k~~~~ 124 (204)
-++ .-..+|.+.|+|+|| +++++++|++||.| +. |.|. |||.++.++..... .+++
T Consensus 343 Q~~~~~~~~~~s~~~~~~~~~~~~la~~v~~l~~~~~~l~g-~~~~~~v~~~~~~w~~~~td~~~l~~~p~~~~--~~~~ 419 (555)
T 1mu2_A 343 QEEKILKVGKYAKVKNTHTNGIRLLAQVVQKIGKEALVIWG-RIPKFHLPVEREIWEQWWDNYWQVTWIPDWDF--VSTP 419 (555)
T ss_dssp ETTEEEEEEEECCC--CEECHHHHHHHHHHHHHHHHHHHHS-SCCEEEESBCHHHHHHHHHHCSSBCCCCSEEE--CCCS
T ss_pred eCCcceeeeeccccccccCCHHHHHHHHHHHhchhheeeeC-CCeeEECCccHHHHHHhhhccchhhcCCcHHh--ccCC
Confidence 010 013468888999998 99999999999999 76 8888 99999998876322 1346
Q ss_pred HHHHHH
Q psy8593 125 RLKRLK 130 (204)
Q Consensus 125 Rl~RW~ 130 (204)
++.||.
T Consensus 420 ~~~~~~ 425 (555)
T 1mu2_A 420 PLVRLA 425 (555)
T ss_dssp SCBCCC
T ss_pred cccccc
Confidence 788875
No 4
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.44 E-value=2.8e-08 Score=93.09 Aligned_cols=107 Identities=7% Similarity=-0.127 Sum_probs=77.0
Q ss_pred cchhHHHHHHHH--hhcCC-------CcccchhhhhchhhhhhhhhhhHHhhhcCCCcchhhhHhhhc------------
Q psy8593 8 LRYDQFLIAKIS--TIRNT-------QSAETAGEKCSALDQHFEFRLITMQLIGSAQRDLFFIIFYKL------------ 66 (204)
Q Consensus 8 ~~~~~~~~~~~~--~~~~~-------~~~~~~~~~c~~~~~~~~~~l~~~q~~~~~~~~~~~~~~~k~------------ 66 (204)
+.|||+|++.++ .+..+ ...-.+.++|+.+|+.++..|...+++...+....|+++...
T Consensus 266 ~~~yrrfi~~~~~~pl~~ll~~~~~~~~~~~Wt~~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~g~~g~vl~q 345 (557)
T 2zd1_A 266 LNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQ 345 (557)
T ss_dssp HHHHTTTSTTCCCHHHHGGGTTCCCTTCEECCCHHHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEETTEEEEEEEE
T ss_pred HHhhhhhccchhHHHHHHHhcccCCCCCceecCHHHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCCCcEEEEEec
Confidence 579999998775 22222 234567799999999999988877765544333333221100
Q ss_pred ---------cchhhhcCChhHHHHHH-HHHHHHHHHHhhcCcc--ceec-ccCCcchhHhhh
Q psy8593 67 ---------GHAFSTSLAIPRDELAG-FRSEATEFCYYVYGHR--NIVV-QTDHQPLLAINK 115 (204)
Q Consensus 67 ---------~~~~~~~Ys~~EkEllA-Iv~al~kfr~yL~G~~--~f~V-~TDHk~L~~l~~ 115 (204)
.-+.+.+|++.|+|+|| +++++++|++||.| + .|.| +|||+.+.++..
T Consensus 346 ~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g-~~p~~~vp~~~~~~~~~~~~ 406 (557)
T 2zd1_A 346 EPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWG-KTPKFKLPIQKETWETWWTE 406 (557)
T ss_dssp ETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHS-SCCEEEESBCHHHHHHHHHH
T ss_pred CCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeC-CCCCEECCCcHHHHHHHhhh
Confidence 01136789999999999 99999999999999 5 5777 899998888754
No 5
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.46 E-value=7.3e-05 Score=57.84 Aligned_cols=85 Identities=15% Similarity=0.079 Sum_probs=62.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhcccc-c-cch-hHHHHHHHHhcCCceEEEeeCCCccc
Q psy8593 73 SLAIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLY-K-IQN-NRLKRLKIKLFPYQFELKYLPGKYMH 149 (204)
Q Consensus 73 ~Ys~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~~-k-~~~-~Rl~RW~~~L~~yd~~I~y~~Gk~n~ 149 (204)
..+..+-|+.|++.||+..... |.++++|+||.+.+...+++.-. + ..+ .-+.++...+..|++.+.|+||..|.
T Consensus 45 ~~tnn~aEl~A~~~aL~~a~~~--g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~~N~ 122 (149)
T 2ehg_A 45 NSTNNVAEYSGLICLMETMLRL--GISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENK 122 (149)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH--TCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGGGCH
T ss_pred CccHHHHHHHHHHHHHHHHHHc--CCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCcccH
Confidence 4556789999999999987653 32689999999999887764211 1 111 22344455566778999999999999
Q ss_pred cCCCCCcccccCc
Q psy8593 150 IAELADYLSRNLL 162 (204)
Q Consensus 150 vA~~~DaLSR~~~ 162 (204)
.| |.|++...
T Consensus 123 ~A---D~LA~~a~ 132 (149)
T 2ehg_A 123 EA---DRLSRVAY 132 (149)
T ss_dssp HH---HHHHHHHH
T ss_pred HH---HHHHHHHH
Confidence 99 99988543
No 6
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=97.02 E-value=0.00059 Score=51.58 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=59.5
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccccccchhHHHHHH----HHhcCC-ceEEEeeCCCcc
Q psy8593 74 LAIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQNNRLKRLK----IKLFPY-QFELKYLPGKYM 148 (204)
Q Consensus 74 Ys~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~~k~~~~Rl~RW~----~~L~~y-d~~I~y~~Gk~n 148 (204)
-+..+-|+.|++.||+..... |..+++|+||.+.+...+++. .+..++.+..+. ..+..| .+.+.|+|+..|
T Consensus 44 ~tn~~aEl~A~~~aL~~a~~~--~~~~v~i~tDS~~vv~~i~~~-~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N 120 (141)
T 3hst_B 44 ATNNVAEYRGLIAGLDDAVKL--GATEAAVLMDSKLVVEQMSGR-WKVKHPDLLKLYVQAQALASQFRRINYEWVPRARN 120 (141)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHTTS-SCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGC
T ss_pred CchHHHHHHHHHHHHHHHHHC--CCceEEEEeChHHHHHHHhCC-cccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCccc
Confidence 455789999999999987542 326899999999998877642 122233343332 344555 799999999999
Q ss_pred ccCCCCCcccccC
Q psy8593 149 HIAELADYLSRNL 161 (204)
Q Consensus 149 ~vA~~~DaLSR~~ 161 (204)
..| |.|.+..
T Consensus 121 ~~A---D~LA~~a 130 (141)
T 3hst_B 121 TYA---DRLANDA 130 (141)
T ss_dssp HHH---HHHHHHH
T ss_pred HHH---HHHHHHH
Confidence 999 9998754
No 7
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=96.95 E-value=0.0006 Score=51.17 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCcc----ceecccCCcchhHhhhccccccchhH----HHHHHHH-hcCC-ceEEEeeC
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHR----NIVVQTDHQPLLAINKKDLYKIQNNR----LKRLKIK-LFPY-QFELKYLP 144 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~----~f~V~TDHk~L~~l~~k~~~k~~~~R----l~RW~~~-L~~y-d~~I~y~~ 144 (204)
+..+-|+.|++.||+..... |.. +++|+||.+.+...+++.- +..+.. +.+.... ++.| .+++.|+|
T Consensus 44 tn~~aEl~A~~~aL~~a~~~--~~~~~~~~v~i~tDS~~vi~~i~~~~-~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~ 120 (140)
T 3u3g_D 44 TNNVAEYEALIRALEDLQMF--GDKLVDMEVEVRMDSELIVRQMQGVY-KVKEPTLKEKFAKIAHIKMERVPNLVFVHIP 120 (140)
T ss_dssp CHHHHHHHHHHHHHHHHGGG--GGGGTTCEEEEEESCHHHHHHHTTSS-CCCCGGGHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred chHHHHHHHHHHHHHHHHHc--CCCCCCceEEEEeChHHHHHHhCCCc-ccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 56688999999999986432 313 8999999999988776421 111222 2233333 5666 89999999
Q ss_pred CCccccCCCCCccccc
Q psy8593 145 GKYMHIAELADYLSRN 160 (204)
Q Consensus 145 Gk~n~vA~~~DaLSR~ 160 (204)
+..|..| |.|.+.
T Consensus 121 ~~~N~~A---D~LA~~ 133 (140)
T 3u3g_D 121 REKNARA---DELVNE 133 (140)
T ss_dssp GGGGHHH---HHHHHH
T ss_pred chhhHHH---HHHHHH
Confidence 9999999 999874
No 8
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=96.09 E-value=0.0075 Score=46.82 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccc-------cc------cchhH-HHHHHHHhcCCceE
Q psy8593 74 LAIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDL-------YK------IQNNR-LKRLKIKLFPYQFE 139 (204)
Q Consensus 74 Ys~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~-------~k------~~~~R-l~RW~~~L~~yd~~ 139 (204)
-+..+-|+.|++.||+..... -. .+++|+||.+.+...+++-. .+ ..+.. +.+-...+..+++.
T Consensus 48 ~tn~~aEl~A~~~aL~~~~~~-~~-~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~ 125 (154)
T 2qkb_A 48 QTNQRAEIHAACKAIEQAKTQ-NI-NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQ 125 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT-TC-CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEE
T ss_pred CchHHHHHHHHHHHHHHHHhC-CC-ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceE
Confidence 356688999999999987542 23 78999999987765554210 01 11222 22333446688999
Q ss_pred EEeeCCCc----cccCCCCCcccccC
Q psy8593 140 LKYLPGKY----MHIAELADYLSRNL 161 (204)
Q Consensus 140 I~y~~Gk~----n~vA~~~DaLSR~~ 161 (204)
+.|+||.. |..| |.|++..
T Consensus 126 ~~~V~~H~g~~~N~~A---D~LA~~a 148 (154)
T 2qkb_A 126 WMHVPGHSGFIGNEEA---DRLAREG 148 (154)
T ss_dssp EEECCTTSSCHHHHHH---HHHHHHH
T ss_pred EEEccCCCCCHhHHHH---HHHHHHH
Confidence 99999965 9888 9998754
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=95.08 E-value=0.011 Score=46.34 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhc--------cc-----cccchhHH-HHHHHHhcCCceEE
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKK--------DL-----YKIQNNRL-KRLKIKLFPYQFEL 140 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k--------~~-----~k~~~~Rl-~RW~~~L~~yd~~I 140 (204)
+..+-|+.|++.||+... .+ .+++|+||.+.+...+++ .- ....+..+ .+....+..+++.+
T Consensus 45 tn~~aEl~A~~~AL~~~~---~~-~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~ 120 (158)
T 2e4l_A 45 TNNRMELLAPIVALEALK---EP-CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDW 120 (158)
T ss_dssp CHHHHHHHHHHHHHHTCS---SC-CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHHhc---cC-CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEE
Confidence 456789999999998753 35 789999999877655442 10 01112222 23334556789999
Q ss_pred EeeCCC----ccccCCCCCcccccCccc
Q psy8593 141 KYLPGK----YMHIAELADYLSRNLLVK 164 (204)
Q Consensus 141 ~y~~Gk----~n~vA~~~DaLSR~~~~~ 164 (204)
.|+||. .|..| |.|++.....
T Consensus 121 ~wV~gH~g~~~Ne~A---D~LAk~a~~~ 145 (158)
T 2e4l_A 121 RWVKGHAGHAENERC---DQLARAAAEA 145 (158)
T ss_dssp EECCTTCCCHHHHHH---HHHHHHHHHS
T ss_pred EEccCCCCchhHHHH---HHHHHHHHHh
Confidence 999975 68888 9998765543
No 10
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=95.02 E-value=0.0093 Score=46.27 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccccccchhHHHHHHHHhcCC--ceEEEeeCCC----cc
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQNNRLKRLKIKLFPY--QFELKYLPGK----YM 148 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~~k~~~~Rl~RW~~~L~~y--d~~I~y~~Gk----~n 148 (204)
+..+-|+.|++.||+.... .| .+++|+||.+.+.....+. .+..++....+...++++ ++.+.++||. .|
T Consensus 49 tNn~aEl~A~~~AL~~a~~--~~-~~v~I~tDS~~i~~w~~~~-w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~N 124 (147)
T 2kq2_A 49 RNVAGEIAAALYAVKKASQ--LG-VKIRILHDYAGIAFWATGE-WKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFN 124 (147)
T ss_dssp CTTHHHHHHHHHHHHHHHH--HT-CCCCBSSCCSTHHHHTTSS-SSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHHH--CC-CeEEEEECcHHHHHHHhCC-CccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcch
Confidence 4568899999999986433 36 6899999998876444321 223333344444333332 6888899985 48
Q ss_pred ccCCCCCcccccCcc
Q psy8593 149 HIAELADYLSRNLLV 163 (204)
Q Consensus 149 ~vA~~~DaLSR~~~~ 163 (204)
-.| |.|+|.-..
T Consensus 125 e~A---D~LA~~a~~ 136 (147)
T 2kq2_A 125 DYV---DMKAKSALG 136 (147)
T ss_dssp HHH---HHHHHHHHT
T ss_pred HHH---HHHHHHHHh
Confidence 888 999875443
No 11
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=94.95 E-value=0.016 Score=45.33 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccc-------cc------cchhHHHH-HHHHh-cCCceE
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDL-------YK------IQNNRLKR-LKIKL-FPYQFE 139 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~-------~k------~~~~Rl~R-W~~~L-~~yd~~ 139 (204)
+...-|+.|++.||+. .+ .+++|+||.+-+...+++-. .+ ..|..+-+ -...+ +..++.
T Consensus 48 Tnn~aEl~A~i~AL~~-----~~-~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~ 121 (150)
T 3qio_A 48 TNQKTELQAIYLALQD-----SG-LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHH-----SC-SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHHh-----CC-CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceE
Confidence 3456899999999987 37 89999999887765544210 00 01112222 12234 345799
Q ss_pred EEeeCCCc----cccCCCCCcccccCc
Q psy8593 140 LKYLPGKY----MHIAELADYLSRNLL 162 (204)
Q Consensus 140 I~y~~Gk~----n~vA~~~DaLSR~~~ 162 (204)
+.++||.. |-.| |.|.|.-.
T Consensus 122 ~~wV~gH~g~~~Ne~A---D~LA~~a~ 145 (150)
T 3qio_A 122 LAWVPAHKGIGGNEQV---DKLVSAGI 145 (150)
T ss_dssp EEECCTTSCCHHHHHH---HHHHHTTT
T ss_pred EEEccCcCCChhHHHH---HHHHHHHH
Confidence 99999998 9999 99988654
No 12
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=94.71 E-value=0.015 Score=45.40 Aligned_cols=82 Identities=21% Similarity=0.163 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhc--------cc-----cccchhHH-HHHHHHhcCCceEE
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKK--------DL-----YKIQNNRL-KRLKIKLFPYQFEL 140 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k--------~~-----~k~~~~Rl-~RW~~~L~~yd~~I 140 (204)
+..+-|+.|++.||+.... . .+++|+||.+.+...+++ .- ....+..+ .+....+..+++.+
T Consensus 43 tn~~aEl~A~~~aL~~~~~---~-~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~ 118 (155)
T 1jl1_A 43 TNNRMELMAAIVALEALKE---H-AEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 (155)
T ss_dssp CHHHHHHHHHHHHHHTCCS---C-CEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEE
T ss_pred cHHHHHHHHHHHHHHHhCc---C-CcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEE
Confidence 4567899999999987542 4 789999998877755542 00 01112222 22334456678999
Q ss_pred EeeCCC----ccccCCCCCcccccCcc
Q psy8593 141 KYLPGK----YMHIAELADYLSRNLLV 163 (204)
Q Consensus 141 ~y~~Gk----~n~vA~~~DaLSR~~~~ 163 (204)
.|+||. .|..| |.|++....
T Consensus 119 ~wV~gH~g~~~Ne~A---D~LA~~a~~ 142 (155)
T 1jl1_A 119 EWVKGHAGHPENERA---DELARAAAM 142 (155)
T ss_dssp EECCSSTTCHHHHHH---HHHHHHHHH
T ss_pred EEcCCCCCCHHHHHH---HHHHHHHHh
Confidence 999975 68888 999876543
No 13
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=94.37 E-value=0.011 Score=46.76 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhcc--------ccc------cchhH-HHHHHHHhcCCce
Q psy8593 74 LAIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKD--------LYK------IQNNR-LKRLKIKLFPYQF 138 (204)
Q Consensus 74 Ys~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~--------~~k------~~~~R-l~RW~~~L~~yd~ 138 (204)
-+..+-|+.|++.||+... .. .+++|+||.+.+...+++. -.+ ..+.. +.+....+..+++
T Consensus 46 ~Tnn~aEl~Ai~~AL~~~~---~~-~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v 121 (166)
T 1ril_A 46 TTNNRMELKAAIEGLKALK---EP-CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRV 121 (166)
T ss_dssp ECHHHHHHHHHHHHHHSCC---SC-CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEE
T ss_pred CcHHHHHHHHHHHHHHHhc---cC-CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeE
Confidence 3456789999999998643 24 6899999998776554430 000 11222 2233344667889
Q ss_pred EEEeeCCC----ccccCCCCCcccccCcc
Q psy8593 139 ELKYLPGK----YMHIAELADYLSRNLLV 163 (204)
Q Consensus 139 ~I~y~~Gk----~n~vA~~~DaLSR~~~~ 163 (204)
.+.|+||. .|..| |.|++....
T Consensus 122 ~~~wV~gH~g~~~Ne~A---D~LAk~a~~ 147 (166)
T 1ril_A 122 RFHFVKGHTGHPENERV---DREARRQAQ 147 (166)
T ss_dssp ECCCCCGGGSCTHHHHH---HHHHHHHHT
T ss_pred EEEEeeCCCCchhHHHH---HHHHHHHHH
Confidence 99999964 78888 999875544
No 14
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=94.25 E-value=0.013 Score=44.84 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhcc-------------c-cccchhHH-HHHHHHhcCCceE
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKD-------------L-YKIQNNRL-KRLKIKLFPYQFE 139 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~-------------~-~k~~~~Rl-~RW~~~L~~yd~~ 139 (204)
+..+-|+.|++.||+.... + .+++|+||.+.+...+++. . ....+..+ .+....+..+++.
T Consensus 43 Tnn~aEl~A~~~AL~~~~~---~-~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~ 118 (146)
T 3h08_A 43 TNNRMELMAAIKGLEALKE---P-ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVT 118 (146)
T ss_dssp CHHHHHHHHHHHHHHTCSS---C-CEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEE
T ss_pred cHHHHHHHHHHHHHHhcCc---c-CcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceE
Confidence 4557899999999998643 5 8999999999776555420 0 00111222 2233345667899
Q ss_pred EEeeCC----CccccCCCCCcccccC
Q psy8593 140 LKYLPG----KYMHIAELADYLSRNL 161 (204)
Q Consensus 140 I~y~~G----k~n~vA~~~DaLSR~~ 161 (204)
+.++|| ..|..| |.|.+..
T Consensus 119 ~~~V~gH~g~~~N~~A---D~LA~~a 141 (146)
T 3h08_A 119 FHKVKGHSDNPYNSRA---DELARLA 141 (146)
T ss_dssp EEECCC-CCSHHHHHH---HHHHHHH
T ss_pred EEEcCCcCCcHhHHHH---HHHHHHH
Confidence 999995 467778 8887643
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=93.79 E-value=0.1 Score=48.48 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccccccchhHH-HHHH-HHhcCCceEEEeeCCC----cc
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQNNRL-KRLK-IKLFPYQFELKYLPGK----YM 148 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~~k~~~~Rl-~RW~-~~L~~yd~~I~y~~Gk----~n 148 (204)
+..+-|+.|++.||+.. + +++.|+||.+-+...+++...+ .+..+ .+.. ......++.+.|++|. .|
T Consensus 475 TNn~aEl~Ai~~aL~~~-----~-~~v~I~tDS~~vi~~i~~~~~~-~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~N 547 (557)
T 2zd1_A 475 TNQKTELQAIYLALQDS-----G-LEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEKVYLAWVPAHKGIGGN 547 (557)
T ss_dssp CHHHHHHHHHHHHHHHS-----C-SEEEEEECCHHHHHHHTTCCSE-ESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTC
T ss_pred CHHHHHHHHHHHHHHhC-----C-CcEEEEeChHHHHHHHhcCCcc-CCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhH
Confidence 45578999999999975 6 8999999998887766542222 12222 2333 2334568999999995 48
Q ss_pred ccCCCCCccccc
Q psy8593 149 HIAELADYLSRN 160 (204)
Q Consensus 149 ~vA~~~DaLSR~ 160 (204)
-.| |.|++.
T Consensus 548 e~A---D~LA~~ 556 (557)
T 2zd1_A 548 EQV---DKLVSA 556 (557)
T ss_dssp CGG---GGCC--
T ss_pred HHH---HHHHhc
Confidence 888 999873
No 16
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=92.54 E-value=0.08 Score=42.07 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhh--ccccccchhH-HHHHHHHh-cCCceEEEeeCCCc---
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINK--KDLYKIQNNR-LKRLKIKL-FPYQFELKYLPGKY--- 147 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~--k~~~k~~~~R-l~RW~~~L-~~yd~~I~y~~Gk~--- 147 (204)
+...-|+.|++.||+.. .+ .++.|+||.+-+...+- +.-....|.- +.+-...+ ..-++.+.+++|..
T Consensus 62 Tnn~aEl~Ai~~AL~~~----~~-~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~ 136 (165)
T 3p1g_A 62 SAQRAELIALTQALKMA----EG-KKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGN 136 (165)
T ss_dssp CHHHHHHHHHHHHHHHT----BT-SEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSC
T ss_pred cHHHHHHHHHHHHHHHc----cC-ceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCC
Confidence 45688999999999976 36 89999999976654331 1001111222 22222333 44579999999977
Q ss_pred ------cccCCCCCcccccC
Q psy8593 148 ------MHIAELADYLSRNL 161 (204)
Q Consensus 148 ------n~vA~~~DaLSR~~ 161 (204)
|-.| |.|.|..
T Consensus 137 ~~~~~gNe~A---D~LA~~a 153 (165)
T 3p1g_A 137 SAEARGNRMA---DQAAREA 153 (165)
T ss_dssp SHHHHHHHHH---HHHHHHH
T ss_pred cCcchHHHHH---HHHHHHH
Confidence 6777 9888744
No 17
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=88.99 E-value=0.23 Score=46.12 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhccccccchhHHHH-HHHH-hcCCceEEEeeCCC----cc
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKKDLYKIQNNRLKR-LKIK-LFPYQFELKYLPGK----YM 148 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k~~~k~~~~Rl~R-W~~~-L~~yd~~I~y~~Gk----~n 148 (204)
+..+-|+.|++.||+. .+ .++.|+||.+-+...+++- .+..+..+.+ .... ....++.+.|++|. .|
T Consensus 472 TNn~aEl~A~i~aL~~-----~~-~~v~I~tDS~~v~~~i~~~-~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~N 544 (555)
T 1mu2_A 472 TNQQAELEAFAMALTD-----SG-PKVNIIVDSQYVMGIVASQ-PTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGN 544 (555)
T ss_dssp CHHHHHHHHHHHHHHT-----SC-SEEEEEESCHHHHHHHHTC-CSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTH
T ss_pred CHHHHHHHHHHHHHHc-----CC-CeEEEEEehHHHHHHHhcc-cccccHHHHHHHHHHhccCCcEEEEEEECCCCChhH
Confidence 3447799999999987 45 8999999998877666531 1112222222 2222 34567899999995 48
Q ss_pred ccCCCCCccccc
Q psy8593 149 HIAELADYLSRN 160 (204)
Q Consensus 149 ~vA~~~DaLSR~ 160 (204)
-.| |.|.+.
T Consensus 545 e~A---D~LA~~ 553 (555)
T 1mu2_A 545 QEV---DHLVSQ 553 (555)
T ss_dssp HHH---HHHHHT
T ss_pred HHH---HHHHHh
Confidence 888 998764
No 18
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=88.26 E-value=0.31 Score=38.66 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhhc-----------cccc--cchhHH-HHHHHHhcC-CceEEEee
Q psy8593 79 DELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINKK-----------DLYK--IQNNRL-KRLKIKLFP-YQFELKYL 143 (204)
Q Consensus 79 kEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~k-----------~~~k--~~~~Rl-~RW~~~L~~-yd~~I~y~ 143 (204)
-|+.|+..++++- .-.+ .+++|+||.+-+..-+++ ...+ ..|.-+ .+....++. -++++.|+
T Consensus 59 Aei~Al~~al~~a--l~~~-~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~V 135 (165)
T 2lsn_A 59 AEIAAVEFACKKA--LKIP-GPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHE 135 (165)
T ss_dssp HHHHHHHHHHHHH--HHSS-SCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEEC
T ss_pred HHHHHHHHHHHHH--hcCC-CeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEE
Confidence 3455555555432 1245 789999998876544431 0000 112222 222233443 47999999
Q ss_pred CCCc----------cccCCCCCcccc
Q psy8593 144 PGKY----------MHIAELADYLSR 159 (204)
Q Consensus 144 ~Gk~----------n~vA~~~DaLSR 159 (204)
+|.. |-.| |.|.|
T Consensus 136 kgH~g~~~~~~~~gNe~A---D~LA~ 158 (165)
T 2lsn_A 136 KGHQPTNTSIHTEGNALA---DKLAT 158 (165)
T ss_dssp CSSSCSSSCHHHHHHHHH---HHHHH
T ss_pred eCCCCccCCCCChHHHHH---HHHHH
Confidence 9874 6666 88766
No 19
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=58.38 E-value=8.4 Score=29.51 Aligned_cols=39 Identities=8% Similarity=-0.090 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhhh
Q psy8593 74 LAIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAINK 115 (204)
Q Consensus 74 Ys~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~~ 115 (204)
-+..+-|++|++.||+..... | .+++|+||.+-+....+
T Consensus 49 ~TNN~aEl~A~i~aL~~~~~~--~-~~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 49 GTNNMGEFLAIVHGLRYLKER--N-SRKPIYSNSQTAIKWVK 87 (142)
T ss_dssp ECHHHHHHHHHHHHHHHHHHT--T-CCCCEEESCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhC--C-CeEEEEEehHHHHHHHH
Confidence 345688999999999987542 4 38999999998876554
No 20
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=47.94 E-value=10 Score=29.07 Aligned_cols=37 Identities=5% Similarity=-0.085 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCccceecccCCcchhHhh
Q psy8593 75 AIPRDELAGFRSEATEFCYYVYGHRNIVVQTDHQPLLAIN 114 (204)
Q Consensus 75 s~~EkEllAIv~al~kfr~yL~G~~~f~V~TDHk~L~~l~ 114 (204)
+--+-|++|++.||+.... .| ..++|+||.+-+...+
T Consensus 44 TNN~aEl~A~i~aL~~l~~--~~-~~v~i~tDSqyVi~wi 80 (134)
T 4htu_A 44 TNNMGEFLAIVHGLRYLKE--RN-SRKPIYSNSQTAIKWV 80 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TT-CCCCEEESCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh--CC-CCEEEEcchHHHHHHH
Confidence 3457899999999998765 35 5689999998775443
Done!