RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8593
         (204 letters)



>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 165

 Score = 25.1 bits (55), Expect = 5.3
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 126 LKRLKIKLFPYQFELKYLPGKYMHIAELAD--YLSRNLLVKNVQEDILMKDMVHTVN 180
           L +L   LF YQ  L+ L G    +A   D   L       N+   +        V 
Sbjct: 68  LNQLHGGLFLYQGLLQALAGISPELAPTLDTLQLDVTDFATNIWLQMEDLGAAPAVQ 124


>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224
           {Burkholderia xenovorans [TaxId: 36873]}
          Length = 115

 Score = 23.9 bits (52), Expect = 9.0
 Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 4/24 (16%)

Query: 177 HTVNKFEINFSPEKF----QWFQQ 196
           H +  +++ F+ E+F     W   
Sbjct: 54  HPMWSYQLAFTQEQFADLVGWLTL 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,134
Number of extensions: 33107
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 6
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)