BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8595
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BVL3|SNX17_MOUSE Sorting nexin-17 OS=Mus musculus GN=Snx17 PE=1 SV=2
Length = 470
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
MHFSIP+T+ DSG Y YN+H+NG HC VRY QL +EQL+K YG VP+FP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVVPAFP 60
Query: 59 PKKLFPLSVIQIEERRTHLEKYMQSCKK 86
PKKLF L+ ++E+RR LEKYMQ+ ++
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQ 88
>sp|Q5R4A5|SNX17_PONAB Sorting nexin-17 OS=Pongo abelii GN=SNX17 PE=2 SV=1
Length = 470
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Query: 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
MHFSIP+T+ DSG Y YN+H+NG HC VRY QL EQL+K YG +P+FP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLREQLRKEYGANVLPAFP 60
Query: 59 PKKLFPLSVIQIEERRTHLEKYMQSCKK 86
PKKLF L+ ++E+RR LEKYMQ+ ++
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQ 88
>sp|Q15036|SNX17_HUMAN Sorting nexin-17 OS=Homo sapiens GN=SNX17 PE=1 SV=1
Length = 470
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
MHFSIP+T+ DSG Y YN+H+NG HC VRY QL +EQL+K YG +P+FP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 59 PKKLFPLSVIQIEERRTHLEKYMQSCKK 86
PKKLF L+ ++E+RR LEKYMQ+ ++
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQ 88
>sp|Q5EA77|SNX17_BOVIN Sorting nexin-17 OS=Bos taurus GN=SNX17 PE=2 SV=1
Length = 470
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
MHFSIP+T+ DSG Y YN+H+NG HC VRY QL +EQL+K YG +P+FP
Sbjct: 1 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 59 PKKLFPLSVIQIEERRTHLEKYMQSCKK 86
PKKLF L+ ++E+RR LEKYMQ+ ++
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQ 88
>sp|Q6AYS6|SNX17_RAT Sorting nexin-17 OS=Rattus norvegicus GN=Snx17 PE=1 SV=1
Length = 470
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
MHFSIP+T+ DSG Y YN+H+NG HC VRY QL +EQL+K YG +P+FP
Sbjct: 1 MHFSIPETESRSGDSGGSTYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 60
Query: 59 PKKLFPLSVIQIEERRTHLEKYMQSCKK 86
PKKLF L+ ++E+RR LEKYMQ+ ++
Sbjct: 61 PKKLFSLTPAEVEQRREQLEKYMQAVRQ 88
>sp|Q5RID7|SNX17_DANRE Sorting nexin-17 OS=Danio rerio GN=snx17 PE=2 SV=1
Length = 473
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 1 MHFSIPDTQQLCDDSGK-YTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPP 59
MHFSIP+T+ D++G Y YN+H+NG HC VRY QL +EQ+KK YG VP+FPP
Sbjct: 1 MHFSIPETEVRSDENGSSYVAYNIHVNGVLHCRVRYSQLLGLHEQIKKEYGNNVVPAFPP 60
Query: 60 KKLFPLSVIQIEERRTHLEKYMQSCKK 86
KK+F L+ ++++RR LEKYMQ+ ++
Sbjct: 61 KKIFTLTPAEVDQRREQLEKYMQAVRQ 87
>sp|Q8N9S9|SNX31_HUMAN Sorting nexin-31 OS=Homo sapiens GN=SNX31 PE=2 SV=3
Length = 440
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 1 MHFSIPDTQQLCDD-SGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPP 59
MHF IP +QQ D G+Y Y++HL+G C VRY QLH +NEQL++++G +P FPP
Sbjct: 3 MHFCIPVSQQRSDALGGRYVLYSVHLDGFLFCRVRYSQLHGWNEQLRRVFG-NCLPPFPP 61
Query: 60 KKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDI 95
K ++ +ERR LE+Y+Q+ N L D+
Sbjct: 62 KYYLAMTTAMADERRDQLEQYLQNVTMDPNVLRSDV 97
>sp|Q6P8Y7|SNX31_MOUSE Sorting nexin-31 OS=Mus musculus GN=Snx31 PE=2 SV=1
Length = 439
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 1 MHFSIPDTQQLCDD-SGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPP 59
MHF IP +QQ D G+Y Y+++L+G C VRY QLH ++EQL++++G +P FPP
Sbjct: 3 MHFCIPVSQQRPDALGGRYVLYSVYLDGFLFCKVRYSQLHRWDEQLRRVFG-NCLPPFPP 61
Query: 60 KKLFPLSVIQIEERRTHLEKYMQS 83
K ++ EERR LE+Y+Q+
Sbjct: 62 KYYLAMTTAMAEERRDQLERYLQN 85
>sp|Q19532|YTDK_CAEEL PX domain-containing protein F17H10.3 OS=Caenorhabditis elegans
GN=F17H10.3 PE=2 SV=2
Length = 540
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 1 MHFSIPDTQQLCDDSG---KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPE-NVPS 56
+H +PDT+ L + S KYT YN+H+NG YH SVR+ L+ F E +K+ + P
Sbjct: 66 IHVDVPDTKTLVERSDGITKYTAYNIHINGWYHGSVRFSHLYEFAELIKQKFSQRYKGPE 125
Query: 57 FPPKKLFPLSVIQIEERRTHLEKYMQS 83
FP KKLF L I+ERR + KY Q+
Sbjct: 126 FPAKKLFKLDPKAIDERRQKITKYFQA 152
>sp|Q28HD5|SNX31_XENTR Sorting nexin-31 OS=Xenopus tropicalis GN=snx31 PE=2 SV=1
Length = 428
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 1 MHFSIPDTQQLCDDSG-KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPP 59
MH IP T++L D G ++ Y+++L G C VRYK LH +NEQ+ +++G +P FPP
Sbjct: 1 MHICIPVTEELQDTLGCRFVLYSVYLEGFLLCKVRYKDLHLWNEQIYRVFG-NRLPKFPP 59
Query: 60 KKLFPLSVIQIEERRTHLEKYMQ 82
K ++ ERR LE+Y+Q
Sbjct: 60 KYYLAMTKAMTNERRLQLEQYLQ 82
>sp|Q6DDY6|SNX31_XENLA Sorting nexin-31 OS=Xenopus laevis GN=snx31 PE=2 SV=1
Length = 431
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 1 MHFSIPDTQQLCDDSG-KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPP 59
MH IP T++L D G ++ Y+++L G VRYK LH +NEQ+ +++G +P FPP
Sbjct: 1 MHICIPVTEELQDTLGCRFVLYSVYLEGFLLFKVRYKDLHLWNEQIHRVFG-NGLPKFPP 59
Query: 60 KKLFPLSVIQIEERRTHLEKYMQ 82
K ++ ERR LE+Y+Q
Sbjct: 60 KHYLAMTKNMANERRLQLEQYLQ 82
>sp|A5PKA5|SNX27_BOVIN Sorting nexin-27 OS=Bos taurus GN=SNX27 PE=2 SV=1
Length = 541
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF 63
S+P + + + K+ YN+++ G CS RY++ ++ LK+ + P P K F
Sbjct: 166 SVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPF 225
Query: 64 PLSVIQIEERRTHLEKYMQ 82
LS Q++ RR LE+Y++
Sbjct: 226 SLSEQQLDARRRGLEEYLE 244
>sp|Q8K4V4|SNX27_RAT Sorting nexin-27 OS=Rattus norvegicus GN=Snx27 PE=1 SV=2
Length = 539
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF 63
S+P + + + K+ YN+++ G CS RY++ ++ LK+ + P P K F
Sbjct: 164 SVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPF 223
Query: 64 PLSVIQIEERRTHLEKYMQ 82
LS Q++ RR LE+Y++
Sbjct: 224 SLSEQQLDARRRGLEEYLE 242
>sp|Q3UHD6|SNX27_MOUSE Sorting nexin-27 OS=Mus musculus GN=Snx27 PE=1 SV=2
Length = 539
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF 63
S+P + + + K+ YN+++ G CS RY++ ++ LK+ + P P K F
Sbjct: 164 SVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPF 223
Query: 64 PLSVIQIEERRTHLEKYMQ 82
LS Q++ RR LE+Y++
Sbjct: 224 SLSEQQLDARRRGLEEYLE 242
>sp|Q96L92|SNX27_HUMAN Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=2
Length = 541
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 3 FSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKL 62
S+P + + + K+ YN+++ G CS RY++ ++ LK+ + P P K
Sbjct: 165 ISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWP 224
Query: 63 FPLSVIQIEERRTHLEKYMQ 82
F LS Q++ RR LE+Y++
Sbjct: 225 FSLSEQQLDARRRGLEEYLE 244
>sp|Q96L94|SNX22_HUMAN Sorting nexin-22 OS=Homo sapiens GN=SNX22 PE=1 SV=1
Length = 193
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 34 RYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHR 93
RY + H ++++KKLY VP FP K+L +E+RR LE Y+Q L + +
Sbjct: 43 RYSEFHALHKRIKKLY---KVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPK 99
Query: 94 DIRDSQSLGAFKTSLVKYLKGTVKETFSG 122
++ + L F T GT++E G
Sbjct: 100 ELLEFLRLRHFPTDPKASNWGTLREFLPG 128
>sp|B1AVY7|KI16B_MOUSE Kinesin-like protein KIF16B OS=Mus musculus GN=Kif16b PE=1 SV=1
Length = 1312
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 34 RYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ-IEERRTHLEKYMQ 82
RY + ++ LK Y FPPKKLF + + ERRTHLEKY++
Sbjct: 1215 RYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVVAERRTHLEKYLR 1264
>sp|Q96L93|KI16B_HUMAN Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF16B PE=1 SV=2
Length = 1317
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 34 RYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ-IEERRTHLEKYMQ 82
RY + ++ LK Y FPPKKLF + I ERR+HLEKY++
Sbjct: 1220 RYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAERRSHLEKYLR 1269
>sp|Q9D3S3|SNX29_MOUSE Sorting nexin-29 OS=Mus musculus GN=Snx29 PE=1 SV=2
Length = 818
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ-IEERRTHLEKYMQS 83
E++ RY + + QL+ + SFPPKK + +EERR L+ Y++S
Sbjct: 691 EWNVYRRYTEFRALHHQLQSAFPQVRAYSFPPKKAIGNKDAKFVEERRKQLQSYLRS 747
>sp|Q8L5Z7|SNX2A_ARATH Sorting nexin 2A OS=Arabidopsis thaliana GN=SNX2A PE=1 SV=1
Length = 587
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ----IEERRTHLEKYMQS 83
E+ R++ + ++L + Y +P P K + V+Q +E+RR LEKY++
Sbjct: 195 EFSVRRRFRDVVTLADRLAETYRGFCIPPRPDKSVVESQVMQKQEFVEQRRVALEKYLRR 254
Query: 84 CKKLWNSLHRDIRDSQSLGAF 104
S H IR+S L F
Sbjct: 255 L-----SAHPVIRNSDELKVF 270
>sp|Q8TEQ0|SNX29_HUMAN Sorting nexin-29 OS=Homo sapiens GN=SNX29 PE=1 SV=3
Length = 813
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ-IEERRTHLEKYMQS 83
E++ RY + + + +L+ Y +FPPKK + +EERR L+ Y++S
Sbjct: 688 EWNIYRRYTEFRSLHHKLQNKYPQVRAYNFPPKKAIGNKDAKFVEERRKQLQNYLRS 744
>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1
Length = 148
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 43 EQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSC 84
EQ++KL VPSF P ++V IE R ++ Y C
Sbjct: 11 EQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVC 52
>sp|Q9USN1|SNX12_SCHPO Sorting nexin-12 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=snx12 PE=3 SV=1
Length = 1010
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 22 NLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF-PLSVIQIEERRTHLEKY 80
N H+ + + RY++ ++QLK+ Y FP K + L+ +E RR LE+Y
Sbjct: 729 NGHVRSGWMVARRYREFAELHKQLKQTYPGVRSLKFPQKSIITSLNKNVLEYRRGALEEY 788
Query: 81 MQSCKKL 87
+QS ++
Sbjct: 789 LQSLFRM 795
>sp|Q08DX0|SNX29_BOVIN Sorting nexin-29 OS=Bos taurus GN=SNX29 PE=2 SV=1
Length = 817
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ-IEERRTHLEKYMQS 83
E++ RY + + +L+ Y +FPPKK + +EERR L+ Y++S
Sbjct: 690 EWNVYRRYAEFRTLHHKLQNKYPQVRAFNFPPKKAIGNKDAKFVEERRKQLQTYLRS 746
>sp|Q15080|NCF4_HUMAN Neutrophil cytosol factor 4 OS=Homo sapiens GN=NCF4 PE=1 SV=2
Length = 339
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 27 GEYHCSVRYKQLHNFNEQLKKLYGPEN--------VPSFPPKKLFPLSVIQIEERRTHLE 78
+Y RY+Q H +L++ +GP++ +P+ P K + E R L
Sbjct: 51 SKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALN 110
Query: 79 KYMQSCKKL--WNSLHRDIR 96
YM+S L W + D+R
Sbjct: 111 AYMKSLLSLPVWVLMDEDVR 130
>sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1
Length = 572
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ----IEERRTHLEKYMQS 83
E+ R++ + ++L + Y +P P K + V+Q +E+RR LEKY++
Sbjct: 184 EFSVRRRFRDIVTLADRLAESYRGFCIPPRPDKSIVESQVMQKQEFVEQRRVALEKYLRR 243
Query: 84 CKKLWNSLHRDIRDSQSLGAF 104
H IR+S L F
Sbjct: 244 LVA-----HPVIRNSDELKVF 259
>sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3
Length = 2120
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 9 QQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYG---PENVPSFPPKKLFPL 65
Q+L D G Y +L ++ Y + +E L + G P P PP+KL
Sbjct: 447 QELTDHMGMTASYTSNLAYSFYSHKLYAEACAISEPLCQHLGLVKPGTYPEVPPEKLHRC 506
Query: 66 SVIQIEERRTHLEKYMQSCKK--LW 88
+Q+E + L K Q CK LW
Sbjct: 507 FRLQVESLKK-LGKQAQGCKMVILW 530
>sp|Q49Y09|RECO_STAS1 DNA repair protein RecO OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=recO
PE=3 SV=1
Length = 251
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 13 DDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSV 67
+D K GY+ +G +V YK H F K LY + + P ++ LS+
Sbjct: 158 EDQSKLVGYSFKYDGAISENVAYKDTHAFQLSNKTLYLLDILQKLPINQMSSLSI 212
>sp|Q6FT93|UTP10_CANGA U3 small nucleolar RNA-associated protein 10 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=UTP10 PE=3 SV=1
Length = 1770
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 65 LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKGTVKE 118
LSVIQ+ + L+ + + K+WNS ++ DS ++ F + L+GTV++
Sbjct: 1439 LSVIQLVTEKLDLKNVLGTLLKVWNSEVKESGDSTAISLF----LSLLEGTVEK 1488
>sp|Q66KX2|CADM4_XENLA Cell adhesion molecule 4 OS=Xenopus laevis GN=cadm4 PE=2 SV=1
Length = 390
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGP 51
S+PD Q+ D + NL NG Y C V K + ++ + +Y P
Sbjct: 266 SLPDRAQIQGDLLSFPSLNLQDNGTYSCQVSNKHGRSSDQYVLVVYDP 313
>sp|Q6NRD5|EXD1_XENLA Exonuclease 3'-5' domain-containing protein 1 OS=Xenopus laevis
GN=exd1 PE=2 SV=1
Length = 444
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 52 ENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKY 111
++V P K L L++ E+ T +++ C + HRDI SQ L +T +K
Sbjct: 33 KDVEEVPAKHLDKLTIEDREQTSTE-QRHADECNQDAERTHRDIDKSQDL---RTRTLKV 88
Query: 112 LKGTVKETFSGW 123
+K +V E G+
Sbjct: 89 IKHSVDEEEVGY 100
>sp|O54831|PR7A2_MOUSE Prolactin-7A2 OS=Mus musculus GN=Prl7a2 PE=2 SV=1
Length = 253
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 15 SGKYTGYNLHLNGEYHCSVRYK-QLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEER 73
S + GY L +NG +H ++R + N N +L+K Y V +KL+ ++ E
Sbjct: 35 SNETDGYPLSINGLFHNAMRLTWNIKNLNMELRKTYTVNQV----SEKLYENYMLDFIED 90
Query: 74 RTHLEKYMQSC 84
+L K + C
Sbjct: 91 MEYLVKALTCC 101
>sp|Q6CE96|MED7_YARLI Mediator of RNA polymerase II transcription subunit 7 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED7 PE=3 SV=1
Length = 235
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 69 QIEERRTHLEKYMQSCKKLWNSLH------RDIRDSQSLGAFKTSLVKYLKGTVKE 118
QI +++ H+E QSC K+ +++ + + + G T VKY+ G K+
Sbjct: 169 QINDKKQHVENIRQSCDKVRDTIRVLSKQFDQVDEFEETGGVTTEEVKYVSGKDKD 224
>sp|Q5U2S5|SNX24_RAT Sorting nexin-24 OS=Rattus norvegicus GN=Snx24 PE=2 SV=1
Length = 169
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 1 MHFSIPDTQQLCDDSGKYTGYNLH-----LNGEYH-CSVRYKQLHNFNEQLKKLYGPENV 54
M IP + +DS GY + +NG H RY + H +++LKK +
Sbjct: 1 MEVYIPSFRH--EDSDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEI 58
Query: 55 PSFPPKKLFPLSVIQIEERRTHLEKYMQSC 84
PS + P +E+RR LE Y+Q+
Sbjct: 59 PSKHVRNWVPKV---LEQRRQGLETYLQAV 85
>sp|Q9CRB0|SNX24_MOUSE Sorting nexin-24 OS=Mus musculus GN=Snx24 PE=2 SV=1
Length = 169
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 1 MHFSIPDTQQLCDDSGKYTGYNLH-----LNGEYH-CSVRYKQLHNFNEQLKKLYGPENV 54
M IP + +DS GY + +NG H RY + H +++LKK +
Sbjct: 1 MEVYIPSFRH--EDSDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEI 58
Query: 55 PSFPPKKLFPLSVIQIEERRTHLEKYMQSC 84
PS + P +E+RR LE Y+Q+
Sbjct: 59 PSKHVRNWVPKV---LEQRRQGLETYLQAV 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,760,412
Number of Sequences: 539616
Number of extensions: 2119119
Number of successful extensions: 5258
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5222
Number of HSP's gapped (non-prelim): 45
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)