Query psy8595
Match_columns 128
No_of_seqs 149 out of 1015
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:48:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06886 PX_SNX27 The phosphoin 100.0 7.2E-31 1.6E-35 177.2 13.0 102 1-107 4-105 (106)
2 cd06885 PX_SNX17_31 The phosph 100.0 1.5E-29 3.3E-34 170.2 11.7 102 2-108 1-103 (104)
3 cd06897 PX_SNARE The phosphoin 100.0 1E-27 2.2E-32 161.7 12.5 99 1-107 1-107 (108)
4 cd07280 PX_YPT35 The phosphoin 100.0 1.5E-27 3.2E-32 164.1 12.6 100 2-106 4-119 (120)
5 cd06864 PX_SNX4 The phosphoino 100.0 9.9E-28 2.2E-32 167.0 11.5 102 1-107 1-128 (129)
6 cd06868 PX_HS1BP3 The phosphoi 100.0 1.7E-27 3.8E-32 163.9 12.1 101 1-107 2-119 (120)
7 cd06880 PX_SNX22 The phosphoin 100.0 3E-27 6.5E-32 160.5 13.0 97 1-107 1-101 (110)
8 cd06867 PX_SNX41_42 The phosph 99.9 2E-27 4.2E-32 161.6 11.2 99 3-107 2-111 (112)
9 cd06877 PX_SNX14 The phosphoin 99.9 3.6E-27 7.9E-32 162.1 12.3 101 2-107 4-118 (119)
10 cd07282 PX_SNX2 The phosphoino 99.9 4.6E-27 1E-31 162.6 12.5 102 1-107 1-123 (124)
11 cd06861 PX_Vps5p The phosphoin 99.9 5.4E-27 1.2E-31 159.6 12.2 102 1-107 1-111 (112)
12 cd06872 PX_SNX19_like_plant Th 99.9 1E-26 2.2E-31 157.1 12.3 100 1-107 1-106 (107)
13 cd06860 PX_SNX7_30_like The ph 99.9 1.3E-26 2.7E-31 158.7 12.4 102 1-107 1-115 (116)
14 cd07281 PX_SNX1 The phosphoino 99.9 1.4E-26 3.1E-31 160.1 12.5 102 1-107 1-123 (124)
15 cd07301 PX_SNX21 The phosphoin 99.9 1.8E-26 4E-31 157.1 12.6 101 1-106 1-110 (112)
16 cd07295 PX_Grd19 The phosphoin 99.9 1.5E-26 3.3E-31 158.4 11.9 103 1-108 2-114 (116)
17 cd06870 PX_CISK The phosphoino 99.9 1.8E-26 3.9E-31 156.2 11.8 99 3-107 5-108 (109)
18 cd06898 PX_SNX10 The phosphoin 99.9 2.1E-26 4.5E-31 157.0 11.7 100 3-107 2-112 (113)
19 cd07277 PX_RUN The phosphoinos 99.9 2.5E-26 5.4E-31 157.7 11.5 101 1-107 1-105 (118)
20 cd07300 PX_SNX20 The phosphoin 99.9 3.6E-26 7.9E-31 156.1 12.3 102 2-108 2-112 (114)
21 cd07293 PX_SNX3 The phosphoino 99.9 2.9E-26 6.3E-31 158.4 11.6 102 1-108 2-121 (123)
22 cd06894 PX_SNX3_like The phosp 99.9 2.8E-26 6.2E-31 158.5 11.4 102 1-108 2-121 (123)
23 cd06865 PX_SNX_like The phosph 99.9 3.4E-26 7.4E-31 157.4 11.5 101 2-107 1-119 (120)
24 cd06862 PX_SNX9_18_like The ph 99.9 5E-26 1.1E-30 157.6 12.2 102 2-108 2-107 (125)
25 cd07279 PX_SNX20_21_like The p 99.9 5.2E-26 1.1E-30 154.6 12.0 102 1-107 1-111 (112)
26 cd07283 PX_SNX30 The phosphoin 99.9 6.3E-26 1.4E-30 155.3 12.3 102 1-107 1-115 (116)
27 cd06863 PX_Atg24p The phosphoi 99.9 6.1E-26 1.3E-30 155.5 12.2 102 1-107 1-117 (118)
28 cd06876 PX_MDM1p The phosphoin 99.9 5.1E-26 1.1E-30 159.0 12.0 101 2-107 21-133 (133)
29 cd06873 PX_SNX13 The phosphoin 99.9 6.8E-26 1.5E-30 155.9 12.2 101 1-106 5-114 (120)
30 cd07286 PX_SNX18 The phosphoin 99.9 5.5E-26 1.2E-30 157.5 11.6 102 2-108 2-107 (127)
31 cd07284 PX_SNX7 The phosphoino 99.9 8.1E-26 1.8E-30 154.7 11.8 102 1-107 1-115 (116)
32 cd06859 PX_SNX1_2_like The pho 99.9 6.7E-26 1.5E-30 154.1 11.1 102 1-107 1-113 (114)
33 cd06874 PX_KIF16B_SNX23 The ph 99.9 2.2E-25 4.7E-30 154.8 13.5 110 1-114 1-122 (127)
34 cd07276 PX_SNX16 The phosphoin 99.9 1.1E-25 2.4E-30 152.6 11.5 99 2-107 5-109 (110)
35 cd07294 PX_SNX12 The phosphoin 99.9 1.2E-25 2.6E-30 157.0 11.9 102 1-108 4-123 (132)
36 cd06881 PX_SNX15_like The phos 99.9 1.1E-25 2.5E-30 154.2 11.6 98 2-107 4-116 (117)
37 cd06866 PX_SNX8_Mvp1p_like The 99.9 1E-25 2.2E-30 151.8 11.0 99 3-107 3-104 (105)
38 cd06878 PX_SNX25 The phosphoin 99.9 3.1E-25 6.7E-30 154.0 11.9 101 2-107 10-126 (127)
39 cd06875 PX_IRAS The phosphoino 99.9 4.5E-25 9.8E-30 151.1 12.4 96 2-107 5-104 (116)
40 cd06879 PX_UP1_plant The phosp 99.9 1.5E-24 3.2E-29 151.7 11.8 100 3-107 3-137 (138)
41 cd07285 PX_SNX9 The phosphoino 99.9 2.7E-24 5.8E-29 148.8 11.9 101 2-107 2-107 (126)
42 cd06882 PX_p40phox The phospho 99.9 3.1E-24 6.8E-29 148.3 11.9 102 1-107 4-117 (123)
43 cd07288 PX_SNX15 The phosphoin 99.9 4.5E-24 9.8E-29 146.5 11.0 98 2-107 4-117 (118)
44 cd07287 PX_RPK118_like The pho 99.9 1.1E-23 2.5E-28 144.5 11.4 96 3-106 5-116 (118)
45 cd06883 PX_PI3K_C2 The phospho 99.9 2E-23 4.4E-28 141.4 11.0 101 2-107 1-108 (109)
46 cd06893 PX_SNX19 The phosphoin 99.9 3.4E-23 7.3E-28 144.7 10.7 100 2-106 1-130 (132)
47 cd06871 PX_MONaKA The phosphoi 99.9 1.1E-22 2.4E-27 140.0 10.6 82 17-106 20-108 (120)
48 cd06093 PX_domain The Phox Hom 99.9 3.4E-22 7.4E-27 132.0 12.5 100 2-106 1-105 (106)
49 KOG2527|consensus 99.9 3.4E-23 7.3E-28 142.6 6.6 105 1-110 18-132 (144)
50 smart00312 PX PhoX homologous 99.9 3.4E-22 7.3E-27 132.9 11.3 85 17-106 13-105 (105)
51 cd06884 PX_PI3K_C2_68D The pho 99.9 1.1E-21 2.4E-26 133.4 11.5 101 2-107 3-110 (111)
52 cd07289 PX_PI3K_C2_alpha The p 99.9 1.9E-21 4E-26 131.5 10.9 101 2-107 1-108 (109)
53 cd06869 PX_UP2_fungi The phosp 99.9 1.2E-21 2.6E-26 134.6 10.1 81 17-107 32-118 (119)
54 cd06895 PX_PLD The phosphoinos 99.9 5.3E-21 1.1E-25 134.7 11.5 101 1-106 4-138 (140)
55 PF00787 PX: PX domain; Inter 99.9 7.6E-21 1.7E-25 126.8 11.0 101 2-107 5-112 (113)
56 cd06887 PX_p47phox The phospho 99.8 2.8E-20 6.1E-25 127.6 12.1 100 2-107 3-115 (118)
57 cd07290 PX_PI3K_C2_beta The ph 99.8 4.3E-20 9.4E-25 124.9 11.5 87 17-107 15-108 (109)
58 cd06890 PX_Bem1p The phosphoin 99.8 1.7E-19 3.6E-24 122.7 11.8 98 1-107 1-111 (112)
59 cd06891 PX_Vps17p The phosphoi 99.8 1.1E-19 2.3E-24 127.7 10.7 99 1-107 30-139 (140)
60 cd06888 PX_FISH The phosphoino 99.8 3.4E-19 7.3E-24 122.4 11.9 101 2-107 3-118 (119)
61 cd07291 PX_SNX5 The phosphoino 99.7 1.1E-17 2.4E-22 116.7 9.0 97 2-107 4-140 (141)
62 cd06892 PX_SNX5_like The phosp 99.7 1.5E-17 3.3E-22 116.8 9.5 97 2-107 4-140 (141)
63 cd07296 PX_PLD1 The phosphoino 99.7 2E-17 4.4E-22 115.4 9.9 100 1-106 4-133 (135)
64 cd07292 PX_SNX6 The phosphoino 99.7 4.7E-17 1E-21 113.4 9.0 97 2-107 4-140 (141)
65 KOG2273|consensus 99.7 5.5E-16 1.2E-20 128.2 10.5 101 3-108 112-227 (503)
66 KOG3784|consensus 99.6 1.6E-15 3.5E-20 120.6 8.9 102 1-108 1-102 (407)
67 cd06889 PX_NoxO1 The phosphoin 99.6 1.8E-14 4E-19 99.0 10.0 88 16-107 17-120 (121)
68 KOG2528|consensus 99.6 4.5E-15 9.7E-20 119.5 7.8 99 4-108 189-292 (490)
69 cd06896 PX_PI3K_C2_gamma The p 99.5 7.3E-14 1.6E-18 92.2 8.9 83 20-107 14-100 (101)
70 KOG1259|consensus 99.4 6.8E-13 1.5E-17 104.3 8.2 86 15-106 24-113 (490)
71 COG5391 Phox homology (PX) dom 99.3 5.7E-12 1.2E-16 104.9 8.9 91 3-98 135-243 (524)
72 cd07297 PX_PLD2 The phosphoino 99.3 1.3E-11 2.7E-16 85.1 8.9 99 1-106 4-128 (130)
73 KOG0905|consensus 98.7 4.6E-08 1E-12 86.8 6.5 91 16-110 1390-1487(1639)
74 KOG2101|consensus 98.5 3.8E-07 8.3E-12 72.9 6.7 69 17-85 134-220 (362)
75 cd07298 PX_RICS The phosphoino 98.3 9.3E-06 2E-10 54.8 8.5 82 17-105 26-113 (115)
76 KOG4773|consensus 98.2 2.8E-06 6.1E-11 67.4 5.2 85 17-105 37-134 (386)
77 cd07278 PX_RICS_like The phosp 98.0 7E-05 1.5E-09 50.4 8.3 82 17-105 25-112 (114)
78 cd07299 PX_TCGAP The phosphoin 97.9 9.1E-05 2E-09 49.8 7.1 82 17-105 24-111 (113)
79 PLN02866 phospholipase D 91.6 0.72 1.6E-05 42.1 7.0 86 17-107 31-170 (1068)
80 KOG1660|consensus 82.5 3.7 8E-05 33.3 5.4 77 27-108 55-163 (399)
81 PF14980 TIP39: TIP39 peptide 64.4 7.9 0.00017 22.3 2.3 16 72-87 34-49 (51)
82 PRK11718 anti-RNA polymerase s 47.0 48 0.001 24.0 4.5 55 67-121 20-74 (161)
83 PF04353 Rsd_AlgQ: Regulator o 45.2 43 0.00093 24.0 4.0 56 67-122 20-75 (153)
84 PF09425 CCT_2: Divergent CCT 40.9 24 0.00052 17.9 1.6 11 73-83 4-14 (27)
85 KOG3540|consensus 35.1 53 0.0011 28.1 3.6 17 71-87 326-342 (615)
86 PRK15321 putative type III sec 35.0 61 0.0013 21.7 3.2 33 76-113 18-50 (120)
87 PF14165 YtzH: YtzH-like prote 34.6 69 0.0015 20.8 3.3 46 75-127 29-86 (87)
88 PF13132 DUF3950: Domain of un 31.9 28 0.00062 18.0 1.0 12 115-126 12-23 (30)
89 KOG1329|consensus 31.4 85 0.0018 28.7 4.4 82 17-108 65-164 (887)
90 PF09457 RBD-FIP: FIP domain ; 30.5 50 0.0011 18.9 2.0 16 71-86 20-35 (48)
91 PF03455 dDENN: dDENN domain; 30.2 52 0.0011 19.5 2.2 32 65-107 36-67 (68)
92 COG3160 Rsd Regulator of sigma 29.7 1.3E+02 0.0028 21.5 4.3 53 67-120 20-73 (162)
93 PRK00286 xseA exodeoxyribonucl 29.3 1.5E+02 0.0033 24.2 5.5 76 3-86 76-158 (438)
94 TIGR00237 xseA exodeoxyribonuc 27.4 1.5E+02 0.0032 24.5 5.0 77 2-86 69-152 (432)
95 PF00969 MHC_II_beta: Class II 26.8 44 0.00095 20.7 1.4 21 64-84 50-70 (75)
96 PF10406 TAF8_C: Transcription 25.5 1.4E+02 0.0031 17.0 4.4 11 53-63 6-16 (51)
97 PF06584 DIRP: DIRP; InterPro 23.5 1.5E+02 0.0032 20.0 3.6 49 38-86 12-70 (109)
98 PF11324 DUF3126: Protein of u 22.0 85 0.0018 19.1 2.0 12 75-86 3-14 (63)
99 smart00027 EH Eps15 homology d 21.1 1.1E+02 0.0025 19.1 2.7 26 35-60 63-89 (96)
100 PRK12544 RNA polymerase sigma 20.6 1.6E+02 0.0034 21.4 3.6 54 65-124 19-73 (206)
No 1
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.97 E-value=7.2e-31 Score=177.20 Aligned_cols=102 Identities=31% Similarity=0.539 Sum_probs=96.8
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEECceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKY 80 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~y 80 (128)
|+|+||+++.+.+++++|++|.|.+++.|.+.||||||.+||+.|.+.++...+|+||+|++++++++++|+||.+||.|
T Consensus 4 ~~i~Ip~~~~~~~~~~~yvvY~I~~~~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~f 83 (106)
T cd06886 4 VPISIPDYKHVEQNGEKFVVYNIYMAGRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFSLSEQQLDARRRGLEQY 83 (106)
T ss_pred ceEecCCcceEcCCCCcEEEEEEEEcCCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 79999999988776559999999999899999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 81 MQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 81 L~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
|+.+++ +|++++|+.+++||++
T Consensus 84 L~~l~~-----~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 84 LEKVCS-----IRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHhc-----CcccccCHHHHHHhcc
Confidence 999999 6999999999999975
No 2
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.96 E-value=1.5e-29 Score=170.19 Aligned_cols=102 Identities=54% Similarity=0.954 Sum_probs=96.0
Q ss_pred EEEeCCcEEeecCCC-CEEEEEEEECceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSG-KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKY 80 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g-~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~y 80 (128)
||+||+++...|..| +|++|.|.|++.|.+.||||||.+||..|.+.+|...+|+||+|+++++++++||+||.+||.|
T Consensus 1 ~v~I~~~~~~~~~~~~~y~~Y~I~v~~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~y 80 (104)
T cd06885 1 HFSIPDTQELSDEGGSTYVAYNIHINGVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLPLTPAQLEERRLQLEKY 80 (104)
T ss_pred CCccCCcceeccCCCCcEEEEEEEECCcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 689999999887555 9999999999999999999999999999999999878999999999999999999999999999
Q ss_pred HHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 81 MQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 81 L~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
|+.|++ +|.++.|+.+++||..+
T Consensus 81 L~~l~~-----~~~l~~s~~~~~FL~~~ 103 (104)
T cd06885 81 LQAVVQ-----DPRIANSDIFNSFLLNA 103 (104)
T ss_pred HHHHhc-----ChhhccCHHHHHHHHhc
Confidence 999999 69999999999999754
No 3
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.95 E-value=1e-27 Score=161.72 Aligned_cols=99 Identities=29% Similarity=0.458 Sum_probs=91.8
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC---CCHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP---LSVIQIEERR 74 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~---~~~~~ie~Rr 74 (128)
|+|+||+++.. +++|++|.|+|. ..|.|.||||||.+||+.|++.+|...+|+||+|++++ .++++||+||
T Consensus 1 ~~v~ip~~~~~---~~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ie~Rr 77 (108)
T cd06897 1 LEISIPTTSVS---PKPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKLVEERR 77 (108)
T ss_pred CeEEcCCeEEc---CCCeEEEEEEEEcCCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHHHHHHH
Confidence 89999999988 358999999985 78999999999999999999999987789999999985 6899999999
Q ss_pred HHHHHHHHHHHhhcccCCC--ccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHR--DIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~--~l~~s~~~~~FL~~ 107 (128)
.+||.||+.+++ +| .+++|+.+++||+.
T Consensus 78 ~~Le~yL~~l~~-----~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 78 VGLEAFLRALLN-----DEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred HHHHHHHHHHHc-----CCccchhcCHHHHHHhCC
Confidence 999999999999 68 99999999999974
No 4
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.95 E-value=1.5e-27 Score=164.06 Aligned_cols=100 Identities=19% Similarity=0.350 Sum_probs=92.3
Q ss_pred EEEeCCcEEeecCC-C-CEEEEEEEEC------ceEEEEechhhHHHHHHHHHHHcCCC---CCCCCCCCCCCC-----C
Q psy8595 2 HFSIPDTQQLCDDS-G-KYTGYNLHLN------GEYHCSVRYKQLHNFNEQLKKLYGPE---NVPSFPPKKLFP-----L 65 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~-g-~y~~Y~I~v~------~~~~v~rRYseF~~L~~~L~~~~~~~---~~P~lP~K~~~~-----~ 65 (128)
+|+||+++++.+++ | +|++|.|++. ..|.|.||||||.+||+.|++.+|.. .+|+||+|++++ .
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~~ 83 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVNL 83 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccccC
Confidence 68999999998775 4 9999999983 68999999999999999999999986 689999999875 5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 66 SVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 66 ~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
+++++|+||.+||.||+.|++ +|.+++|+.+++||.
T Consensus 84 ~~~~ie~Rr~~Le~fL~~l~~-----~p~l~~s~~~~~FL~ 119 (120)
T cd07280 84 NKAWLEKRRRGLQYFLNCVLL-----NPVFGGSPVVKEFLL 119 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHhC-----CHhhccChHHHHhhC
Confidence 899999999999999999999 699999999999996
No 5
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.95 E-value=9.9e-28 Score=166.97 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=93.4
Q ss_pred CEEEeCCcEEeecCCC-----CEEEEEEEEC------------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy8595 1 MHFSIPDTQQLCDDSG-----KYTGYNLHLN------------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF 63 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g-----~y~~Y~I~v~------------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~ 63 (128)
|+|+|++++...+++| +|++|.|++. ..|.|.||||||.+||+.|.+.+|...+|+||+|+.+
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 8999999999998755 9999999983 2578999999999999999999999889999999863
Q ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 64 ---------PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 64 ---------~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++++++|+||.+||.||+.|++ +|.+++|+.++.||++
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~-----~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAG-----HPELCQDKIFLEFLTH 128 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHc-----ChhhhcCcHHHHhcCC
Confidence 36899999999999999999999 6999999999999975
No 6
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.95 E-value=1.7e-27 Score=163.87 Aligned_cols=101 Identities=21% Similarity=0.405 Sum_probs=92.4
Q ss_pred CEEEeCCcEEeecCC-CCEEEEEEEEC----------------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q psy8595 1 MHFSIPDTQQLCDDS-GKYTGYNLHLN----------------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF 63 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~-g~y~~Y~I~v~----------------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~ 63 (128)
|+|+||+++...++. ++|++|+|.+. ..|.|.||||||.+||+.|++.+|...+|+||+|+++
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 689999999998653 49999999862 1689999999999999999999998889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 64 PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 64 ~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+ +++++++||.+||.||+.|++ +|.+++|+.+++||..
T Consensus 82 ~-~~~~ie~Rr~~Le~fL~~i~~-----~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 82 V-SESDIRERRAAFNDFMRFISK-----DEKLANCPELLEFLGV 119 (120)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHc-----ChhhhcCHHHHHHhcC
Confidence 7 999999999999999999999 6999999999999963
No 7
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.95 E-value=3e-27 Score=160.45 Aligned_cols=97 Identities=29% Similarity=0.470 Sum_probs=89.4
Q ss_pred CEEEeCCcEEeecCCC-CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSG-KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTH 76 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g-~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~ 76 (128)
|.|+||+++...+++| +|++|.|+|. ..|.|.||||||.+||+.|++.++ .|+||+|++.+++++++++||.+
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~~~~~~~~ie~Rr~~ 77 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRVRNWNPKVLEQRRQG 77 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCccCCCHHHHHHHHHH
Confidence 6899999999998776 9999999983 689999999999999999999997 79999999988999999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
||.||+.++++ +. .++.+.+||+.
T Consensus 78 Le~yL~~ll~~-----~~--~s~~l~~FL~~ 101 (110)
T cd06880 78 LEAYLQGLLKI-----NE--LPKQLLDFLGV 101 (110)
T ss_pred HHHHHHHHHcC-----cc--ccHHHHHHhCC
Confidence 99999999994 65 59999999974
No 8
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.95 E-value=2e-27 Score=161.65 Aligned_cols=99 Identities=22% Similarity=0.461 Sum_probs=91.2
Q ss_pred EEeCCcEEeecCCC-CEEEEEEEECceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC----------CCCHHHHH
Q psy8595 3 FSIPDTQQLCDDSG-KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF----------PLSVIQIE 71 (128)
Q Consensus 3 v~Ip~~~~~~~~~g-~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~----------~~~~~~ie 71 (128)
|.|+++....|+.| +|++|.|++.. |.|.||||||.+||+.|.+.+|...+|+||+|..+ ++++++||
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~-~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~ie 80 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG-SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAKIIE 80 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee-EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcHHHHH
Confidence 68999999988765 99999999875 99999999999999999999999889999999875 25899999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+||.+||.||+.|++ +|.+++|+.+++||+.
T Consensus 81 ~Rr~~Le~fL~~l~~-----~p~l~~s~~~~~FL~~ 111 (112)
T cd06867 81 RRKRMLQRFLNRCLQ-----HPILRNDIVFQKFLDP 111 (112)
T ss_pred HHHHHHHHHHHHHhc-----ChhhccCcHHHHhcCC
Confidence 999999999999999 6999999999999974
No 9
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.95 E-value=3.6e-27 Score=162.08 Aligned_cols=101 Identities=20% Similarity=0.360 Sum_probs=92.1
Q ss_pred EEEeCCcEEeecC-CC-CEEEEEEEEC-----------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCH
Q psy8595 2 HFSIPDTQQLCDD-SG-KYTGYNLHLN-----------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSV 67 (128)
Q Consensus 2 ~v~Ip~~~~~~~~-~g-~y~~Y~I~v~-----------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~ 67 (128)
+|+||+.....+. +| .|++|.|+|. ..|.|.||||||.+||..|++.+|....|+||+|++++ +++
T Consensus 4 ~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~~~~~ 83 (119)
T cd06877 4 RVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFGPKSY 83 (119)
T ss_pred eEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccCCCCH
Confidence 5899999999762 44 9999999974 47999999999999999999999987789999999985 799
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++|+||.+||.||+.|++ +|.+++|+.+++||+.
T Consensus 84 ~~ie~Rr~~Le~fL~~ll~-----~~~l~~s~~~~~FL~~ 118 (119)
T cd06877 84 EFLESKREIFEEFLQKLLQ-----KPELRGSELLYDFLSP 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHhC-----CcccccCHHHHHhCCC
Confidence 9999999999999999999 6999999999999974
No 10
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.95 E-value=4.6e-27 Score=162.62 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=92.3
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcC--CCCCCCCCCCCCCC------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYG--PENVPSFPPKKLFP------ 64 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~--~~~~P~lP~K~~~~------ 64 (128)
|+|+|.+.+..+++.+.|++|.|+++ +.|.|.||||||.+||+.|.+.++ +..+|++|+|++++
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 68999999999877679999999974 579999999999999999999987 34589999999864
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 65 -----LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 65 -----~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
++++++|+||.+||.||++|++ ||.+++|+.++.||++
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~-----~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVK-----HPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhc-----CcccccChHHHHhhcC
Confidence 3789999999999999999999 6999999999999975
No 11
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.95 E-value=5.4e-27 Score=159.55 Aligned_cols=102 Identities=21% Similarity=0.302 Sum_probs=93.7
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIE 71 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie 71 (128)
..|+|-+....++..++|++|+|++. ..|.|.||||||.+||++|...+|+..+|++|+|++++ ++++++|
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fie 80 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVGRFDDNFVE 80 (112)
T ss_pred CEEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccccCCCHHHHH
Confidence 36889999999776669999999974 47999999999999999999999998899999999985 7999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+||.+||.||+.|++ ||.+++|+.++.||+.
T Consensus 81 ~Rr~~Le~fL~~i~~-----~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 81 QRRAALEKMLRKIAN-----HPVLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHHHHHC-----CcccccCcHHHHhcCC
Confidence 999999999999999 6999999999999975
No 12
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.95 E-value=1e-26 Score=157.14 Aligned_cols=100 Identities=18% Similarity=0.351 Sum_probs=89.8
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC--CCCHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF--PLSVIQIEERR 74 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~--~~~~~~ie~Rr 74 (128)
+++.|.+.+.+++++++|++|.|.|. ..|.|.||||||.+||++|++ ++.. .|+||+|+++ +.++++||+||
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~~~~~~fie~Rr 78 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSSSLDGAFIEERC 78 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCCCCCHHHHHHHH
Confidence 47899999999887669999999983 589999999999999999997 5544 6789999997 36899999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+||+||+.|++ +|.+++|+.+++||..
T Consensus 79 ~~Le~yL~~l~~-----~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 79 KLLDKYLKDLLV-----IEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHHHhc-----ChhhhcCHHHHHHhcc
Confidence 999999999999 6999999999999963
No 13
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.94 E-value=1.3e-26 Score=158.70 Aligned_cols=102 Identities=18% Similarity=0.328 Sum_probs=93.7
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC-----CCCH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF-----PLSV 67 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~-----~~~~ 67 (128)
..|+|.+++..+++.|+|++|.|++. +.|.|.||||||.+||++|...+|+..+|+||+|..+ ++++
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 36899999999887779999999873 5899999999999999999999999889999999984 3699
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++|+||.+||.||+.|++ ||.+++|+.++.||+.
T Consensus 81 ~fie~Rr~~Le~fL~~i~~-----hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 81 EFVATRMRALHKFLNRIVE-----HPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHc-----CcccccCcHHHHhhcC
Confidence 9999999999999999999 7999999999999975
No 14
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.94 E-value=1.4e-26 Score=160.06 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=92.1
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCC--CCCCCCCCCCCCC------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGP--ENVPSFPPKKLFP------ 64 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~--~~~P~lP~K~~~~------ 64 (128)
++|+|.+++..+++.++|++|.|.+. +.|.|.||||||.+||++|.+.++. ..+|++|+|++++
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 57999999999887779999999984 5899999999999999999999974 4579999998764
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 65 -----LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 65 -----~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
++++++|+||.+|+.||+.|++ ||.+++|+.++.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~-----~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVS-----HPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhc-----CcccccChHHHHHhCC
Confidence 3789999999999999999999 6999999999999974
No 15
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.94 E-value=1.8e-26 Score=157.08 Aligned_cols=101 Identities=24% Similarity=0.405 Sum_probs=91.4
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC-------ceEEEEechhhHHHHHHHHHHHcCCCC-CCCCCCCCCC-CCCHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN-------GEYHCSVRYKQLHNFNEQLKKLYGPEN-VPSFPPKKLF-PLSVIQIE 71 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~-------~~~~v~rRYseF~~L~~~L~~~~~~~~-~P~lP~K~~~-~~~~~~ie 71 (128)
+.|+|.+++++++++++|++|+|.+. ..|.|.||||||.+||+.|++.+|... .++||+|+++ ++++++||
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~~~~~~~ie 80 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRKNFTAETIA 80 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccCCCCHHHHH
Confidence 36899999999887779999999982 479999999999999999999999642 3589999998 58999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
+||.+|+.||+.|++ +|.++.|+.+++||.
T Consensus 81 ~Rr~~Le~fL~~i~~-----~p~l~~s~~~~~FL~ 110 (112)
T cd07301 81 KRSRAFEQFLCHLHS-----LPELRASPAFLEFFY 110 (112)
T ss_pred HHHHHHHHHHHHHhc-----CHHHhcChHHHHHhC
Confidence 999999999999999 699999999999985
No 16
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.94 E-value=1.5e-26 Score=158.35 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=93.5
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIE 71 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie 71 (128)
++|+|.+.+..++++|+|++|.|.+. ..|.|.||||||.+||.+|.+.+|...+|++|+|.+++ +++++||
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~~~~~~~ie 81 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTNRFSDEVIE 81 (116)
T ss_pred eEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccccCCCHHHHH
Confidence 46889999999887779999999873 46889999999999999999999988899999999875 7999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccc-cChhHHHhhhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIR-DSQSLGAFKTSL 108 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~-~s~~~~~FL~~~ 108 (128)
+||.+||.||+.|++ ||.++ +|+.+.+||+..
T Consensus 82 ~Rr~~Le~fL~~i~~-----~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 82 ERRQGLETFLQSVAG-----HPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred HHHHHHHHHHHHHhc-----CHhhhhCCHHHHHhcCCC
Confidence 999999999999999 69998 699999999863
No 17
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.94 E-value=1.8e-26 Score=156.25 Aligned_cols=99 Identities=22% Similarity=0.401 Sum_probs=89.9
Q ss_pred EEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCHHHHHHHHHHH
Q psy8595 3 FSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--LSVIQIEERRTHL 77 (128)
Q Consensus 3 v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--~~~~~ie~Rr~~L 77 (128)
|+||++....+..++|++|.|++. ..|.|.||||||.+||++|++.+|.. .++||+|++++ +++++|++||.+|
T Consensus 5 ~~i~~~~~~~~~~~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~~~~~~-~~~lP~K~~~~~~~~~~~ie~Rr~~L 83 (109)
T cd06870 5 VSIPSSDEDREKKKRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKKQFPAS-NLKIPGKRLFGNNFDPDFIKQRRAGL 83 (109)
T ss_pred eeeccceeeccCCCCeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHHHCccc-CcCCCCCcccccCCCHHHHHHHHHHH
Confidence 789999888765559999999983 78999999999999999999999975 45899999986 6999999999999
Q ss_pred HHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 78 EKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 78 e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
|.||+.|++ +|.+++|+.+++||+.
T Consensus 84 e~fL~~ll~-----~p~l~~s~~~~~FL~~ 108 (109)
T cd06870 84 DEFIQRLVS-----DPKLLNHPDVRAFLQM 108 (109)
T ss_pred HHHHHHHhC-----CHhhhcChHHHHHhCc
Confidence 999999999 6999999999999973
No 18
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.94 E-value=2.1e-26 Score=157.04 Aligned_cols=100 Identities=25% Similarity=0.391 Sum_probs=89.1
Q ss_pred EEeCCcEEeec-CCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CC-HHHHH
Q psy8595 3 FSIPDTQQLCD-DSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LS-VIQIE 71 (128)
Q Consensus 3 v~Ip~~~~~~~-~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~-~~~ie 71 (128)
|+|-+.+...+ +.|+||+|.|.+. ..|.|.||||||.+||.+|.+.+|...+|+||+|++++ ++ +++||
T Consensus 2 v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~fie 81 (113)
T cd06898 2 VEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFGRFNNEGFIE 81 (113)
T ss_pred eEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCCHHHHH
Confidence 67777777766 4449999999973 46799999999999999999999987899999999985 45 99999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+||.+|+.||+.|++ ||.+.+|+.++.||+.
T Consensus 82 ~Rr~~L~~fL~~i~~-----~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 82 ERQQGLQDFLEKVLQ-----TPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHc-----ChhhccChHHHHhccC
Confidence 999999999999999 7999999999999974
No 19
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.94 E-value=2.5e-26 Score=157.69 Aligned_cols=101 Identities=25% Similarity=0.351 Sum_probs=90.3
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTH 76 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~ 76 (128)
|.|+||++...+++.+.|++|.|.|. ..|.|.||||||.+||++|++.+|....|+||+|++++ .+++++|+||.+
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g~~~~~~ie~Rr~~ 80 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIGNKDAKFVEERRKR 80 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccCCCCHHHHHHHHHH
Confidence 68999999999887669999999984 78999999999999999999999987789999999885 789999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
||.||+.++.+ .+.+++.+.++|+.
T Consensus 81 Le~yL~~ll~~------~~~~~~~~~~~~~~ 105 (118)
T cd07277 81 LQVYLRRVVNT------LIQTSPELTACPSK 105 (118)
T ss_pred HHHHHHHHHHH------HHHhCchhhcCCCH
Confidence 99999999993 56677777777764
No 20
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.94 E-value=3.6e-26 Score=156.06 Aligned_cols=102 Identities=25% Similarity=0.320 Sum_probs=90.8
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEE-------CceEEEEechhhHHHHHHHHHHHcCC-CCCCCCCCCCCCC-CCHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHL-------NGEYHCSVRYKQLHNFNEQLKKLYGP-ENVPSFPPKKLFP-LSVIQIEE 72 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v-------~~~~~v~rRYseF~~L~~~L~~~~~~-~~~P~lP~K~~~~-~~~~~ie~ 72 (128)
-++||++..+.++.++|++|+|.+ .+.|.|.||||||.+||..|.+.++. ...|+||+|++++ +++++|++
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~~~~~~~ie~ 81 (114)
T cd07300 2 LFEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTGNFSEEIIAE 81 (114)
T ss_pred eEEecCceeeccCCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccCCCCHHHHHH
Confidence 479999999977556999999975 15899999999999999999999875 3468999999984 79999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 73 RRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 73 Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
||.+||.||+.+++ +|.++.|+.+++||...
T Consensus 82 Rr~~Le~yL~~l~~-----~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 82 RRVALRDYLTLLYS-----LRFVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHHHHhc-----CHhhhcChHHHHHhCCc
Confidence 99999999999999 69999999999999753
No 21
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.94 E-value=2.9e-26 Score=158.42 Aligned_cols=102 Identities=24% Similarity=0.417 Sum_probs=92.4
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC---------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF--------- 63 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~--------- 63 (128)
++|+|.+.+...++.|+|++|.|.+. ..|.|.||||||.+||+.|... +...+|++|+|.++
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERE-SKVVVPPLPGKALFRQLPFRGDD 80 (123)
T ss_pred eEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhc-cCCccCCCCCCchhhhccccccc
Confidence 47899999999988889999999873 5789999999999999999875 56789999999986
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 64 -PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 64 -~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
+++++++|+||.+||.||+.|++ ||.+++|+.++.||++.
T Consensus 81 ~~~~~~fie~Rr~~Le~FL~~i~~-----hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 81 GIFDDSFIEERKQGLEQFLNKVAG-----HPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHc-----CcccccCcHHHhhcCCC
Confidence 36899999999999999999999 79999999999999863
No 22
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.94 E-value=2.8e-26 Score=158.46 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=92.0
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC---------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF--------- 63 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~--------- 63 (128)
++|+|.+++...++.++|++|+|.+. ..|.|.||||||.+||+.|.+. ++..+|+||+|.++
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~~ 80 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGDD 80 (123)
T ss_pred eEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceeccccccccc
Confidence 47899999999888779999999873 4689999999999999999876 77789999999985
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 64 -PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 64 -~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
+++++++|+||.+|+.||+.|++ ||.+++|+.++.||+..
T Consensus 81 ~~~~~~fie~Rr~~L~~fL~~i~~-----hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 81 GIFEEEFIEERRKGLETFINKVAG-----HPLAQNEKCLHMFLQEE 121 (123)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHc-----ChhhccCCHHHHhcCCC
Confidence 26899999999999999999999 69999999999999863
No 23
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.94 E-value=3.4e-26 Score=157.40 Aligned_cols=101 Identities=28% Similarity=0.433 Sum_probs=91.8
Q ss_pred EEEeCCcEEeecCC------CCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC---
Q psy8595 2 HFSIPDTQQLCDDS------GKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--- 64 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~------g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--- 64 (128)
.|+|-+.+...+++ ++||+|.|++. ..|.|.||||||.+||++|.+.+|+..+|++|+|.+++
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~ 80 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQV 80 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccc
Confidence 37888999988753 39999999983 57999999999999999999999998999999999873
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 65 -LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 65 -~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++++||+||.+||.||+.|++ ||.+++|+.++.||+.
T Consensus 81 ~~~~~fie~Rr~~Le~fL~~i~~-----~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 81 MQSAEFIEQRRVALEKYLNRLAA-----HPVIGLSDELRVFLTL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHc-----CceeecCcHHHHhccC
Confidence 4899999999999999999999 6999999999999975
No 24
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.94 E-value=5e-26 Score=157.63 Aligned_cols=102 Identities=23% Similarity=0.372 Sum_probs=93.4
Q ss_pred EEEeCCcEEeec--CCCCEEEEEEEEC-ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCD--DSGKYTGYNLHLN-GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHL 77 (128)
Q Consensus 2 ~v~Ip~~~~~~~--~~g~y~~Y~I~v~-~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~L 77 (128)
+|+|.+++..++ +.++|++|.|.+. ..|.|.||||||.+||+.|.+.+|+..+|+||+|.+++ +++++|++||.+|
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~fie~Rr~~L 81 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTHTNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTGRFEEDFIEKRRERL 81 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEecCcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 689999999864 3349999999986 78999999999999999999999998899999999985 7999999999999
Q ss_pred HHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 78 EKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 78 e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
+.||+.|++ ||.+++|+.+++||...
T Consensus 82 e~fL~~I~~-----~p~l~~s~~~~~FL~~~ 107 (125)
T cd06862 82 ELWMNRLAR-----HPVLSQSEVFRHFLTCT 107 (125)
T ss_pred HHHHHHHhc-----CHhhhcChHHHHHcCCc
Confidence 999999999 79999999999999853
No 25
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.94 E-value=5.2e-26 Score=154.63 Aligned_cols=102 Identities=24% Similarity=0.332 Sum_probs=92.1
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC-------ceEEEEechhhHHHHHHHHHHHcCCCC-CCCCCCCCCCC-CCHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN-------GEYHCSVRYKQLHNFNEQLKKLYGPEN-VPSFPPKKLFP-LSVIQIE 71 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~-------~~~~v~rRYseF~~L~~~L~~~~~~~~-~P~lP~K~~~~-~~~~~ie 71 (128)
+.+.|+++..+.++.++|++|+|+|. ..|.|.||||||.+||++|++.+|... .|+||+|++++ +++++|+
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~~~~~~~ie 80 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNFSSELIA 80 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecccCCHHHHH
Confidence 36789999999877669999999983 469999999999999999999999753 57999999985 7999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+||.+||.||+.|++ +|.+++|+.+++||..
T Consensus 81 ~Rr~~Le~fL~~l~~-----~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 81 ERSRAFEQFLGHILS-----IPNLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHHHHHhC-----CHhhhcChHHHHHhCC
Confidence 999999999999999 6999999999999974
No 26
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.94 E-value=6.3e-26 Score=155.29 Aligned_cols=102 Identities=20% Similarity=0.368 Sum_probs=92.7
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-----CCH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-----LSV 67 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-----~~~ 67 (128)
+.|+|-+.+...+++++|++|.|+.. ..|.|.||||||.+||+.|.+.+|...+|++|+|+++. +++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd07283 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSE 80 (116)
T ss_pred CEEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCH
Confidence 35889999999877679999999984 47999999999999999999999998899999998752 489
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++|+||.+||.||+.|++ ||.+++|+.++.||+.
T Consensus 81 ~fie~Rr~~Le~FL~~i~~-----hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 81 EFVETRRKALDKFLKRIAD-----HPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHc-----CcccccCcHHHHhhcC
Confidence 9999999999999999999 7999999999999974
No 27
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.94 E-value=6.1e-26 Score=155.53 Aligned_cols=102 Identities=24% Similarity=0.361 Sum_probs=90.4
Q ss_pred CEEEeCCcEEeecC-CCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC------CC
Q psy8595 1 MHFSIPDTQQLCDD-SGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF------PL 65 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~-~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~------~~ 65 (128)
++|+|-+.+...++ .++|++|.|++. ..|.|.||||||.+||+.|.+.+|...+|+||+|..+ ++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 46777777777633 449999999974 4699999999999999999999999889999999975 25
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 66 SVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 66 ~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++++++||.+||.||+.|++ ||.+++|+.++.||++
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~-----~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISL-----HPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhc-----CcccccCcHHHhhcCC
Confidence 899999999999999999999 7999999999999975
No 28
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.94 E-value=5.1e-26 Score=158.97 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=92.8
Q ss_pred EEEeCCcEEeecCCC-CEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-C--CHHH
Q psy8595 2 HFSIPDTQQLCDDSG-KYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-L--SVIQ 69 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g-~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~--~~~~ 69 (128)
.|+||++....+.+| +|++|.|+|. ..|.|.||||||.+||+.|++.+|...+|+||+|++++ . ++++
T Consensus 21 ~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~~~~~~~~~ 100 (133)
T cd06876 21 RVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKTLL 100 (133)
T ss_pred eEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccccCccCCHHH
Confidence 589999999887767 9999999984 27999999999999999999999988899999999986 3 7999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 70 IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 70 ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++||.+|+.||+.|++ +|.+++|+.+.+||++
T Consensus 101 ie~Rr~~Le~yL~~Ll~-----~~~l~~s~~l~~FLs~ 133 (133)
T cd06876 101 VEERRKALEKYLQELLK-----IPEVCEDEEFRKFLSQ 133 (133)
T ss_pred HHHHHHHHHHHHHHHHc-----CccccCChHHHHhhcC
Confidence 99999999999999999 6999999999999963
No 29
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.94 E-value=6.8e-26 Score=155.91 Aligned_cols=101 Identities=25% Similarity=0.389 Sum_probs=91.1
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIE 71 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie 71 (128)
++++|++++.+++++++|++|.|.|. ..|.|.||||||.+||++|++.+|....|+||+|++++ +++++++
T Consensus 5 ~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~~~~~~~ie 84 (120)
T cd06873 5 LTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFNNLDRAFLE 84 (120)
T ss_pred EEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccCCCCHHHHH
Confidence 36899999999987679999999983 46999999999999999999999988889999999985 6899999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
+||.+||.||+.|++ ++.+++|+.+++++.
T Consensus 85 ~Rr~~Le~fL~~ll~-----~~~l~~~~~~~~~l~ 114 (120)
T cd06873 85 KRRKMLNQYLQSLLN-----PEVLDANPGLQEIVL 114 (120)
T ss_pred HHHHHHHHHHHHHhC-----CHhhccCHHHHHHHH
Confidence 999999999999999 699999976666654
No 30
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.94 E-value=5.5e-26 Score=157.52 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=93.2
Q ss_pred EEEeCCcEEee--cCCCCEEEEEEEEC-ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLC--DDSGKYTGYNLHLN-GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHL 77 (128)
Q Consensus 2 ~v~Ip~~~~~~--~~~g~y~~Y~I~v~-~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~L 77 (128)
.++|.+++..+ ++.++|++|+|... ..|.|.||||||.+||..|...+|.+.+|++|+|..++ ++++||++||.+|
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FIe~Rr~~L 81 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPSHTGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATGRFEEDFISKRRKGL 81 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEecCceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHHHHHHHHH
Confidence 47889999987 44449999999874 77999999999999999999999998899999999984 7999999999999
Q ss_pred HHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 78 EKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 78 e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
|.||+.|++ ||.++.|+.++.||+..
T Consensus 82 q~FL~ria~-----hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 82 IWWMDHMCS-----HPVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHHHc-----CcccccChHHHHHhcCC
Confidence 999999999 79999999999999854
No 31
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.94 E-value=8.1e-26 Score=154.74 Aligned_cols=102 Identities=17% Similarity=0.330 Sum_probs=93.1
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-----CCH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-----LSV 67 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-----~~~ 67 (128)
|.|+|.+.+...++.++|+.|+|... +.|.|.||||||.+||+.|.+.+|...+|++|+|.++. +++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 57899999999877679999999873 57899999999999999999999998899999998762 589
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++|+||++||.||++|++ ||.++.|+.++.||+.
T Consensus 81 ~fie~Rr~~Le~FL~ri~~-----hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIAD-----HPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHc-----CcccccChHHHHhhcC
Confidence 9999999999999999999 7999999999999975
No 32
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.94 E-value=6.7e-26 Score=154.10 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=92.5
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CC--HHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LS--VIQ 69 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~--~~~ 69 (128)
+.|.|.+++.++++.++|++|.|++. ..|.|.||||||.+||+.|.+.+|...+|+||+|.+++ .+ +++
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 57899999999887779999999984 47999999999999999999999988899999999985 33 459
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 70 IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 70 ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+|+||.+||.||+.|++ +|.+++|+.++.||+.
T Consensus 81 ie~Rr~~L~~fL~~i~~-----~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 81 IEKRRAALERFLRRIAA-----HPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHhc-----ChhhccCcHHHhhcCC
Confidence 99999999999999999 6999999999999975
No 33
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.93 E-value=2.2e-25 Score=154.77 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=92.6
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEE---CceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTH 76 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v---~~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~ 76 (128)
|+|+||++....++.++|++|.|.+ ++.|.|.||||||.+||+.|++.+|....|+||+|++++ .+++++|+||.+
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g~~~~~~ie~Rr~~ 80 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVAKERRRQ 80 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecCCCCHHHHHHHHHH
Confidence 6899999988766555999999997 368999999999999999999999987789999999995 689999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChh--------HHHhhhhhHHhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQS--------LGAFKTSLVKYLKG 114 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~--------~~~FL~~~~~~~~~ 114 (128)
||.||+.|+++ .+.+..|+. ..++|.....++.+
T Consensus 81 Le~yL~~Ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 122 (127)
T cd06874 81 LETYLRNFFSV----CLKLPACPLYPKVGRTLSKATLCDFSPFFRK 122 (127)
T ss_pred HHHHHHHHHHh----chhccCCccccccccCccHHHHHHhhhHHhc
Confidence 99999999997 577777775 44455544444443
No 34
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.93 E-value=1.1e-25 Score=152.61 Aligned_cols=99 Identities=21% Similarity=0.403 Sum_probs=89.8
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--LSVIQIEERRT 75 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--~~~~~ie~Rr~ 75 (128)
+|.|.+++...+ +++||+|.|+|. ..|.|.||||||.+||+.|.+.+|. ..|+||+|++++ +++++|++||.
T Consensus 5 ~~~i~~~~~~~~-~~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~~~~~~fie~Rr~ 82 (110)
T cd07276 5 RPPILGYEVMEE-RARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKDNFDPDFLEERQL 82 (110)
T ss_pred cceeeeEEEeec-CCCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecccCCHHHHHHHHH
Confidence 578999988865 469999999983 5899999999999999999999987 578999999874 69999999999
Q ss_pred HHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 76 HLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 76 ~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+||.||+.|++ +|.+++|+.+++||.-
T Consensus 83 ~Lq~fL~~ll~-----~~~l~~s~~~~~FL~~ 109 (110)
T cd07276 83 GLQAFVNNIMA-----HKDIAKCKLVREFFCL 109 (110)
T ss_pred HHHHHHHHHhc-----CHhhhcChHHHHHhcc
Confidence 99999999999 6999999999999963
No 35
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.93 E-value=1.2e-25 Score=156.97 Aligned_cols=102 Identities=23% Similarity=0.344 Sum_probs=91.9
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC---------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF--------- 63 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~--------- 63 (128)
|+|+|.+.+.+++++++|++|.|.+. ..+.|.||||||.+||+.|.+. +...+|++|+|.+.
T Consensus 4 ~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-~g~~iPpLP~K~~~~~~~~~~~~ 82 (132)
T cd07294 4 LEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRGDE 82 (132)
T ss_pred EEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-CCCccCCCCCCceeccccccccc
Confidence 58999999999998889999999963 4788999999999999999875 66789999999973
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 64 -PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 64 -~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
+++++++|+||.+||.||+.|++ ||.+++++.++.||++.
T Consensus 83 ~~~~~~fie~Rr~~Le~FL~~i~~-----hp~l~~~~~l~~FL~~~ 123 (132)
T cd07294 83 GIFEESFIEERRQGLEQFINKIAG-----HPLAQNERCLHMFLQDE 123 (132)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHc-----CcccccChHHHHhcCCC
Confidence 25899999999999999999999 69999999999999864
No 36
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.93 E-value=1.1e-25 Score=154.17 Aligned_cols=98 Identities=24% Similarity=0.429 Sum_probs=88.4
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----------ceEEEEechhhHHHHHHHHHHHcCC----CCCCCCCCCCCCC-CC
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----------GEYHCSVRYKQLHNFNEQLKKLYGP----ENVPSFPPKKLFP-LS 66 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----------~~~~v~rRYseF~~L~~~L~~~~~~----~~~P~lP~K~~~~-~~ 66 (128)
+++|++++... ++||+|.|.+. +.|.|.||||||.+||++|++.++. ..+|+||+|++++ ++
T Consensus 4 ~~~V~d~~~~~---~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g~~~ 80 (117)
T cd06881 4 SFTVTDTRRHK---KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFGRFD 80 (117)
T ss_pred EEEecCcceec---CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccCCCC
Confidence 68999999885 48999999973 3799999999999999999998864 3579999999996 79
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++|++||.+||.||+.|++ +|.+++|+.+++||+.
T Consensus 81 ~~~IeeRr~~Le~fL~~i~~-----~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 81 AAVIEERRQAILELLDFVGN-----HPALYQSSAFQQFFEE 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhC-----CHhhhcChHHHHHhcc
Confidence 99999999999999999999 7999999999999974
No 37
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.93 E-value=1e-25 Score=151.79 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=86.9
Q ss_pred EEeCCcEEeecCCC-CEEEEEEEEC-ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHH
Q psy8595 3 FSIPDTQQLCDDSG-KYTGYNLHLN-GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHLEK 79 (128)
Q Consensus 3 v~Ip~~~~~~~~~g-~y~~Y~I~v~-~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~Le~ 79 (128)
|.|+...... +.+ +|++|.|.++ +.|.|.||||||.+||+.|.+.+|...+|+||+|++++ ++++++++||.+||.
T Consensus 3 ~~~~~~~~~~-g~~~~y~~Y~i~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~ 81 (105)
T cd06866 3 VTVELVPEKK-GLFLKHVEYEVSSKRFKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSADREFLEARRRGLSR 81 (105)
T ss_pred eEEEeccccc-CcccCCEEEEEEEecCCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 3444444433 233 9999999985 78999999999999999999999998899999999995 799999999999999
Q ss_pred HHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 80 YMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 80 yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
||+.|++ +|.+++|+.++.||+.
T Consensus 82 fL~~l~~-----~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 82 FLNLVAR-----HPVLSEDELVRTFLTE 104 (105)
T ss_pred HHHHHhc-----ChhhccChHHHhhcCC
Confidence 9999999 6999999999999975
No 38
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.93 E-value=3.1e-25 Score=154.05 Aligned_cols=101 Identities=16% Similarity=0.289 Sum_probs=86.1
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC-------------ceEEEEechhhHHHHHHHHHHHcCCC---CCCCCCCCCCCCC
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN-------------GEYHCSVRYKQLHNFNEQLKKLYGPE---NVPSFPPKKLFPL 65 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~-------------~~~~v~rRYseF~~L~~~L~~~~~~~---~~P~lP~K~~~~~ 65 (128)
.++||+...+.++++.|++|.|.|. ..|.|.||||||.+||++|++.+|.. .+|.+|+|.+.+.
T Consensus 10 ~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~~~~ 89 (127)
T cd06878 10 RANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFKSI 89 (127)
T ss_pred eEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccccccC
Confidence 5889999887665559999999994 24999999999999999999999974 4554444444468
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 66 SVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 66 ~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++++|+||.+||.||+.|++ ++.+++|+.+.+||..
T Consensus 90 ~~~fle~Rr~~Le~YLq~ll~-----~~~l~~s~~l~~FLsp 126 (127)
T cd06878 90 DKKFLDKSKNQLQKYLQFILE-----DETLCQSEALYSFLSP 126 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHhC-----ChhhcCCHHHHHHcCC
Confidence 999999999999999999999 6999999999999974
No 39
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.93 E-value=4.5e-25 Score=151.05 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=87.7
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHL 77 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~L 77 (128)
.|+||+++... +|++|.|+|. ..|.|.||||||.+||+.|++.++ ...|+||+|++++ ++++++++||.+|
T Consensus 5 ~v~I~~~~~~~----~~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~~-~~~~~~P~Kk~~~~~~~~~ie~Rr~~L 79 (116)
T cd06875 5 KIRIPSAETVE----GYTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEHK-VDKDLLPPKKLIGNKSPSFVEKRRKEL 79 (116)
T ss_pred EEEECCEEEEC----CEEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHcC-cccCcCCCccccCCCCHHHHHHHHHHH
Confidence 68999998763 7999999984 789999999999999999999994 5678999999986 7999999999999
Q ss_pred HHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 78 EKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 78 e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
|.||+.+++ ++.++.|+.+.+||+.
T Consensus 80 e~yL~~ll~-----~~~~~~s~~l~~FL~~ 104 (116)
T cd06875 80 EIYLQTLLS-----FFQKTMPRELAHFLDF 104 (116)
T ss_pred HHHHHHHHh-----hhcccCCHHHHHHhCC
Confidence 999999999 6899999999999975
No 40
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.92 E-value=1.5e-24 Score=151.70 Aligned_cols=100 Identities=24% Similarity=0.343 Sum_probs=87.9
Q ss_pred EEeCCcEEeecCCC--C------------------------EEEEEEEEC--------ceEEEEechhhHHHHHHHHHHH
Q psy8595 3 FSIPDTQQLCDDSG--K------------------------YTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKL 48 (128)
Q Consensus 3 v~Ip~~~~~~~~~g--~------------------------y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~ 48 (128)
|+|||+.....+++ + -+.|.|+|. ..|.|.||||||.+||+.|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~ 82 (138)
T cd06879 3 VFIPSWVVLPKSKESDGKAINPKVGNMSVVYSEYQPLNNAVDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKL 82 (138)
T ss_pred EeccceeEeccccCCCCccccccccccccceeeeecccCCceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHH
Confidence 78899888876532 3 237888873 2799999999999999999999
Q ss_pred cCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 49 YGPENVPSFPPKKLFP-LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 49 ~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+|...+|++|+|++++ ++++++|+||.+||.||+.|++ +|.+++|+.+++||+.
T Consensus 83 ~p~~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~-----~p~l~~s~~v~~FLel 137 (138)
T cd06879 83 FPKKKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLS-----DIDLSRSVPVASFLEL 137 (138)
T ss_pred CCCCcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHc-----CccccCCHHHHHHhCC
Confidence 9988899999999885 6899999999999999999999 7999999999999974
No 41
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.92 E-value=2.7e-24 Score=148.82 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=90.7
Q ss_pred EEEeCCcEEeecCCC--CEEEEEEEEC-ceEEEEechhhHHHHHHHHHHHcCC-CCCCCCCCCCCCC-CCHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSG--KYTGYNLHLN-GEYHCSVRYKQLHNFNEQLKKLYGP-ENVPSFPPKKLFP-LSVIQIEERRTH 76 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g--~y~~Y~I~v~-~~~~v~rRYseF~~L~~~L~~~~~~-~~~P~lP~K~~~~-~~~~~ie~Rr~~ 76 (128)
.|.|.+++..++..| +|++|+|... ..+.|.||||||.+||+.|...++. +.+|++|+|.+++ ++++||++||.+
T Consensus 2 ~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g~f~~~FIe~Rr~~ 81 (126)
T cd07285 2 DCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTGRFEEEFIKMRMER 81 (126)
T ss_pred EEEEcCcccccCCCCCcCeEEEEEEeccCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccCCCCHHHHHHHHHH
Confidence 578888888874343 9999999985 7899999999999999999999974 4589999999985 799999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
||.||+.|++ ||.+++++.++.||+.
T Consensus 82 Le~FL~ri~~-----hP~L~~~~~l~~FL~~ 107 (126)
T cd07285 82 LQAWMTRMCR-----HPVISESEVFQQFLNF 107 (126)
T ss_pred HHHHHHHHHc-----CcCcCCCcHHHHHhCC
Confidence 9999999999 7999999999999974
No 42
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.92 E-value=3.1e-24 Score=148.28 Aligned_cols=102 Identities=20% Similarity=0.319 Sum_probs=89.3
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC--------CCCCCCCCCCCCCCCHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP--------ENVPSFPPKKLFPLSVI 68 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~--------~~~P~lP~K~~~~~~~~ 68 (128)
|+++|++.+.. .+.++|++|.|+|. ..|.|.||||||.+||.+|++.+|. ..+|+||+|++++.+.+
T Consensus 4 i~~~I~~~~~~-~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~~~~~~ 82 (123)
T cd06882 4 VSATIADIEEK-RGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYVGRKAE 82 (123)
T ss_pred EEEEEeeeeEE-eCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeecCccHH
Confidence 57899998765 44569999999983 4799999999999999999999985 35899999999976669
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 69 QIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 69 ~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
++++||.+|+.||+.|+++ ++.+++|+.++.||..
T Consensus 83 ~~e~Rr~~Le~yl~~Ll~~----p~~i~~~~~v~~Fl~~ 117 (123)
T cd06882 83 IAERRIPLLNRYMKELLSL----PVWVLMDEDVRLFFYQ 117 (123)
T ss_pred HHHHHHHHHHHHHHHHHcC----CHHhcCCHHHHHHhCC
Confidence 9999999999999999995 3469999999999974
No 43
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.91 E-value=4.5e-24 Score=146.52 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=85.5
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----------ceEEEEechhhHHHHHHHHHHHcCCC-----CCCCCCCCCCCC-C
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----------GEYHCSVRYKQLHNFNEQLKKLYGPE-----NVPSFPPKKLFP-L 65 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----------~~~~v~rRYseF~~L~~~L~~~~~~~-----~~P~lP~K~~~~-~ 65 (128)
.++|.+++..++ +|++|+|.+. ..|.|+||||||.+||+.|...+++. ..|++|+|++++ +
T Consensus 4 ~~~V~dp~~~~~---gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g~f 80 (118)
T cd07288 4 FYSVTDPRTHPK---GYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFGRF 80 (118)
T ss_pred EEEecCCcCcCC---CcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeeccC
Confidence 467778877765 5999998852 47999999999999999999876542 489999999985 7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 66 SVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 66 ~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
++++||+||.+|+.||+.|++ ||.+++|+.+++||..
T Consensus 81 ~~~fIeeRR~~Le~fL~~i~~-----~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 81 EAAVIEERRNAAEAMLLFTVN-----IPALYNSPQLKEFFRD 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhC-----ChhhcCChHHHHHHhc
Confidence 999999999999999999999 6999999999999964
No 44
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.91 E-value=1.1e-23 Score=144.48 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=83.7
Q ss_pred EEeCCcEEeecCCCCEEEEEEEEC----------ceEEEEechhhHHHHHHHHHHHcCC-----CCCCCCCCCCCCC-CC
Q psy8595 3 FSIPDTQQLCDDSGKYTGYNLHLN----------GEYHCSVRYKQLHNFNEQLKKLYGP-----ENVPSFPPKKLFP-LS 66 (128)
Q Consensus 3 v~Ip~~~~~~~~~g~y~~Y~I~v~----------~~~~v~rRYseF~~L~~~L~~~~~~-----~~~P~lP~K~~~~-~~ 66 (128)
++|.+++..++ +||+|+|++. ..|.|+||||||.+||+.|...++. ..+|++|+|++++ ++
T Consensus 5 ~~V~dp~~~~~---gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g~~d 81 (118)
T cd07287 5 YTVTDPRRHPK---GYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFGRFD 81 (118)
T ss_pred EEecCCeEcCC---CeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeecCCC
Confidence 56777776643 5999999852 3699999999999999999998864 2479999999985 79
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
+++||+||.+|+.||+.+++ +|.+++|+.+++||.
T Consensus 82 ~~fIe~RR~~Le~fL~~i~~-----~p~l~~s~~~~~Fl~ 116 (118)
T cd07287 82 ESVIEERRQCAEDLLQFSAN-----IPALYNSSQLEDFFK 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CccccCChHHHHHhc
Confidence 99999999999999999999 699999999999996
No 45
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.90 E-value=2e-23 Score=141.45 Aligned_cols=101 Identities=18% Similarity=0.296 Sum_probs=88.9
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC-----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN-----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--LSVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~-----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--~~~~~ie~Rr 74 (128)
+|+|.+++...+ .++|++|.|.|. ..|.|.||||||.+||++|++.+|...+|+||+|.+++ .+++++++|+
T Consensus 1 ~~~i~~~~~~~~-~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~ 79 (109)
T cd06883 1 EVSVFGFQKRYS-PEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRK 79 (109)
T ss_pred CcEEEEEEEEec-CCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHH
Confidence 478889977653 358999999993 35999999999999999999999998899999999885 3578999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+|++||+.|+++ ++.+++|+.+.+||..
T Consensus 80 ~~Le~YL~~Ll~~----~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 80 IELNSYLKSLFNA----SPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHcC----CHHHhcCHHHHHhcCC
Confidence 9999999999995 4799999999999964
No 46
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.90 E-value=3.4e-23 Score=144.66 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=81.0
Q ss_pred EEEeCCcEEeecC----CCCEEEEEEEEC-------------------ceEEEEechhhHHHHHHHHHHHcCC--CCCCC
Q psy8595 2 HFSIPDTQQLCDD----SGKYTGYNLHLN-------------------GEYHCSVRYKQLHNFNEQLKKLYGP--ENVPS 56 (128)
Q Consensus 2 ~v~Ip~~~~~~~~----~g~y~~Y~I~v~-------------------~~~~v~rRYseF~~L~~~L~~~~~~--~~~P~ 56 (128)
+|+||++....+. +|+|++|+|.++ ..|.|.||||||.+||++|+...+. ...+.
T Consensus 1 ~~~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~ 80 (132)
T cd06893 1 NIRIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVK 80 (132)
T ss_pred CccccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccC
Confidence 4788888777653 349999999862 4799999999999999999986331 11234
Q ss_pred CCCCCC----C-CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 57 FPPKKL----F-PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 57 lP~K~~----~-~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
+|+|.+ + ++++++||+||.+||.||+.|++ +|.+++|+.+++||.
T Consensus 81 ~P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~-----~p~l~~s~~l~~FL~ 130 (132)
T cd06893 81 GPPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCS-----IPEISNSEEVQEFLA 130 (132)
T ss_pred CCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHc-----CHhhhcCHHHHHHHc
Confidence 666654 2 46899999999999999999999 699999999999996
No 47
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.89 E-value=1.1e-22 Score=139.97 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=73.9
Q ss_pred CEEEEEEEEC------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhhcc
Q psy8595 17 KYTGYNLHLN------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHLEKYMQSCKKLWN 89 (128)
Q Consensus 17 ~y~~Y~I~v~------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~Le~yL~~l~~~~~ 89 (128)
+|+.|.|+|. ..|.|.||||||.+||++|+... . .++||+|++++ ++++++++||.+||.||+.|++
T Consensus 20 ~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~-~~plP~K~~~g~~~~~~ie~Rr~~Le~yL~~l~~--- 93 (120)
T cd06871 20 SHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISG--I-SLPLPPKKLIGNMDREFIAERQQGLQNYLNVILM--- 93 (120)
T ss_pred CcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHcC--C-CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHc---
Confidence 7999999983 48999999999999999998643 2 34699999985 7999999999999999999999
Q ss_pred cCCCccccChhHHHhhh
Q psy8595 90 SLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 90 ~~~~~l~~s~~~~~FL~ 106 (128)
+|.+++|+.+++||+
T Consensus 94 --~p~l~~s~~~~~FL~ 108 (120)
T cd06871 94 --NPILASCLPVKKFLD 108 (120)
T ss_pred --ChhhccCHHHHHhcC
Confidence 699999999999996
No 48
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.89 E-value=3.4e-22 Score=132.02 Aligned_cols=100 Identities=38% Similarity=0.625 Sum_probs=91.6
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTH 76 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~ 76 (128)
.|.|+++....+..+++++|.|.+. ..|.|.||||||.+||+.|...++...+|+||+|.+++ .+++.+++|+.+
T Consensus 1 ~i~I~~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~~~~~~~~~~R~~~ 80 (106)
T cd06093 1 SVSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFGNLDPEFIEERRKQ 80 (106)
T ss_pred CEEeCCceEEcCCCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccccCCHHHHHHHHHH
Confidence 4789999998774459999999983 58999999999999999999999988899999999985 489999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
|+.||+.|++ ++.+.+++.+.+|+.
T Consensus 81 L~~yl~~l~~-----~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 81 LEQYLQSLLN-----HPELRNSEELKEFLE 105 (106)
T ss_pred HHHHHHHHhc-----CcccccChHHHHHhC
Confidence 9999999999 699999999999986
No 49
>KOG2527|consensus
Probab=99.89 E-value=3.4e-23 Score=142.62 Aligned_cols=105 Identities=25% Similarity=0.391 Sum_probs=91.7
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCC--HHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLS--VIQI 70 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~--~~~i 70 (128)
++|.|++.++.+++.+.||.|.|.+. ..-.|.||||||++||+.|...-+...+|+||.|.++... .++|
T Consensus 18 LeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~~fre~I 97 (144)
T KOG2527|consen 18 LEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQLPFREFI 97 (144)
T ss_pred EEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcCchHHHH
Confidence 46899999997777779999999973 3345789999999999999999887889999999998653 3999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHH
Q psy8595 71 EERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVK 110 (128)
Q Consensus 71 e~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~ 110 (128)
|+||++|+.||+.++. ||.+.++..+..||++..-
T Consensus 98 EeRrqgLe~fl~kVag-----hpL~q~~~~Lh~Flq~~~~ 132 (144)
T KOG2527|consen 98 EERRQGLEVFLRKVAG-----HPLLQNERCLHLFLQSELI 132 (144)
T ss_pred HHHHHHHHHHHHHHhC-----chhhhccHHHHHHHHhhhh
Confidence 9999999999999999 6888889999999987543
No 50
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.88 E-value=3.4e-22 Score=132.89 Aligned_cols=85 Identities=33% Similarity=0.527 Sum_probs=77.5
Q ss_pred CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHhhcc
Q psy8595 17 KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP----LSVIQIEERRTHLEKYMQSCKKLWN 89 (128)
Q Consensus 17 ~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~----~~~~~ie~Rr~~Le~yL~~l~~~~~ 89 (128)
.|+.|.|+++ ..|.|.||||||.+||+.|...+|...+|+||+|.+++ .+++++++|+.+||.||+.|++
T Consensus 13 ~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~--- 89 (105)
T smart00312 13 YYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLLN--- 89 (105)
T ss_pred EEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHHc---
Confidence 7777777774 57999999999999999999999988899999999874 5899999999999999999999
Q ss_pred cCCCcccc-ChhHHHhhh
Q psy8595 90 SLHRDIRD-SQSLGAFKT 106 (128)
Q Consensus 90 ~~~~~l~~-s~~~~~FL~ 106 (128)
+|.+++ |+.+.+||+
T Consensus 90 --~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 90 --HPELINESEVVLSFLE 105 (105)
T ss_pred --CHhhhccChHHHHhcC
Confidence 699999 999999984
No 51
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.88 E-value=1.1e-21 Score=133.36 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=90.0
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC-----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN-----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--LSVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~-----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--~~~~~ie~Rr 74 (128)
+|+|=+++...+ ..+|++|.|.|. ..|.|+|||+||.+||++|++.||...+|+||+|.+++ .++++.|+|+
T Consensus 3 ~v~v~~~~kr~~-~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~ 81 (111)
T cd06884 3 RVTVVGFQKRYD-PEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRK 81 (111)
T ss_pred EEEEEEEEEEec-CCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHH
Confidence 577888888754 348999999982 67999999999999999999999998899999998875 5789999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+||.||+.|++. ++.|++|+.+..|+..
T Consensus 82 ~~L~~Yl~~Ll~~----~~~is~~~~v~~FF~p 110 (111)
T cd06884 82 QDIQQFLNSLFKM----AEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHcC----CHHHhcChHHHHhcCc
Confidence 9999999999997 6999999999999864
No 52
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.87 E-value=1.9e-21 Score=131.50 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=88.1
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC---c--eEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCC--CHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN---G--EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPL--SVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~---~--~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~--~~~~ie~Rr 74 (128)
+++|++++...+. ++|.+|.|+|. + ...|+|||+||.+||++|++.||...+|.||+|.+++. ..+.+|+|+
T Consensus 1 ~~~V~~f~Kr~~p-~k~yvY~i~V~~~~~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~ 79 (109)
T cd07289 1 EVSVFTYHKRYNP-DKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRK 79 (109)
T ss_pred CcEEeeEEEEEcC-CCeEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHH
Confidence 4799999977643 46679999993 2 24499999999999999999999888999999999864 469999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+|+.||+.+++. ++.+++|+.+..|+..
T Consensus 80 ~~L~~Yl~~Ll~~----p~~Is~~d~v~~FF~p 108 (109)
T cd07289 80 VELNSYIQSLMNS----STEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHcC----ChhhhcChHHHHhccc
Confidence 9999999999997 7999999999999863
No 53
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.87 E-value=1.2e-21 Score=134.65 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=75.4
Q ss_pred CEEEEEEEEC---c---eEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy8595 17 KYTGYNLHLN---G---EYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNS 90 (128)
Q Consensus 17 ~y~~Y~I~v~---~---~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~ 90 (128)
+|++|.|+|. + .|.|.||||||.+||++|++.||...+|+||+|++ .++|+||.+|+.||+.|++
T Consensus 32 ~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~-----~~~E~Rr~~Le~yL~~Ll~---- 102 (119)
T cd06869 32 HHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK-----LPREKLRLSLRQYLRSLLK---- 102 (119)
T ss_pred ceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch-----hHHHHHHHHHHHHHHHHhc----
Confidence 7999999983 3 89999999999999999999999988999999987 5789999999999999999
Q ss_pred CCCccccChhHHHhhhh
Q psy8595 91 LHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 91 ~~~~l~~s~~~~~FL~~ 107 (128)
+|.+++|+.++.||.+
T Consensus 103 -~p~l~~s~~~~~FL~~ 118 (119)
T cd06869 103 -DPEVAHSSILQEFLTS 118 (119)
T ss_pred -ChhhhcChHHHHhhCC
Confidence 6999999999999975
No 54
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.86 E-value=5.3e-21 Score=134.75 Aligned_cols=101 Identities=23% Similarity=0.310 Sum_probs=87.5
Q ss_pred CEEEeCCcEEeecC--CCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHc-------C------------------
Q psy8595 1 MHFSIPDTQQLCDD--SGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLY-------G------------------ 50 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~--~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~-------~------------------ 50 (128)
+++.|.+++...++ .+.+++|.|++. ..|.|.||||||.+||.+|+... |
T Consensus 4 i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~~~ 83 (140)
T cd06895 4 IKARITDVERSGTTRHLLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRKPE 83 (140)
T ss_pred cEEEEeEEeccCCCCCCCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccccc
Confidence 46889999887654 349999999994 68999999999999999999862 2
Q ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 51 ----PENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 51 ----~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
...+|+||.|.....+++++++|+.+||.||+.|++ +|.+++++.+.+||+
T Consensus 84 ~~~~~~~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~LL~-----~~~~rn~~~~~~FLe 138 (140)
T cd06895 84 REKKNRRLPSLPALPDILVSEEQLDSRKKQLENYLQNLLK-----IPDYRNHPETLEFLE 138 (140)
T ss_pred cccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHc-----ChhhhcCHHHHhhhc
Confidence 235888998887666899999999999999999999 699999999999996
No 55
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.86 E-value=7.6e-21 Score=126.83 Aligned_cols=101 Identities=34% Similarity=0.571 Sum_probs=87.6
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC----CCHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP----LSVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~----~~~~~ie~Rr 74 (128)
+|+|.+.....++...++.|+|+.. ..|.+.|||+||.+||.+|+..++...+|+||++.++. .+++++++|+
T Consensus 5 ~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~~~R~ 84 (113)
T PF00787_consen 5 QVSVVDPETSGNKKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFIEERR 84 (113)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHHHHHH
T ss_pred EEEEcCCEEEcCCCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHHHHHH
Confidence 5788887777332226666667664 58999999999999999999999998999999999874 5899999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
..|+.||+.+++ +|.+.+|+.+..||+.
T Consensus 85 ~~L~~yL~~l~~-----~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 85 QALEKYLQSLLS-----HPELRSSEALKEFLES 112 (113)
T ss_dssp HHHHHHHHHHHT-----SCHHHHSHHHHHHHCT
T ss_pred HHHHHHHHHHHc-----ChhhhCchHHHHhcCC
Confidence 999999999999 6999999999999974
No 56
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.85 E-value=2.8e-20 Score=127.57 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=86.8
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC---------CCCCCCCCCCCCCCCHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP---------ENVPSFPPKKLFPLSVI 68 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~---------~~~P~lP~K~~~~~~~~ 68 (128)
+|.|-+++.... ..+|++|.|.|. ..|.|+|||+||.+||.+|.+.||. ..+|.||+|.+++.+ +
T Consensus 3 ~~~~~~~~kr~~-~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~~~~-~ 80 (118)
T cd06887 3 HIALLGFEKRFV-PSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWFDGQ-R 80 (118)
T ss_pred eEEEEEEEEeec-CCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCcccCcc-h
Confidence 566667776652 238999999983 5799999999999999999999996 568999999998665 9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 69 QIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 69 ~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+.|+|+.+|+.||+.++.. ++.+++|+.+.+|+..
T Consensus 81 v~e~Rr~~L~~Yl~~Ll~l----p~~i~~s~~v~~Ff~~ 115 (118)
T cd06887 81 AAENRQGTLTEYCSTLLSL----PPKISRCPHVLDFFKV 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHhC----CchhhCCHHHHHHhCc
Confidence 9999999999999999886 6899999999999974
No 57
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.84 E-value=4.3e-20 Score=124.88 Aligned_cols=87 Identities=16% Similarity=0.318 Sum_probs=78.6
Q ss_pred CEEEEEEEEC-----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHhhcc
Q psy8595 17 KYTGYNLHLN-----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLS--VIQIEERRTHLEKYMQSCKKLWN 89 (128)
Q Consensus 17 ~y~~Y~I~v~-----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~--~~~ie~Rr~~Le~yL~~l~~~~~ 89 (128)
+|.+|.|+|. ..|.|.|||+||.+||++|++.||...+|.||+|.+++.+ .+++|+|+.+|+.||+.++..
T Consensus 15 k~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~-- 92 (109)
T cd07290 15 KGYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHLIHA-- 92 (109)
T ss_pred CcEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHHHcC--
Confidence 6666999993 2388999999999999999999998789999999999764 699999999999999999987
Q ss_pred cCCCccccChhHHHhhhh
Q psy8595 90 SLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 90 ~~~~~l~~s~~~~~FL~~ 107 (128)
++.|++|+.+..|+..
T Consensus 93 --~~~Is~s~~v~~FF~p 108 (109)
T cd07290 93 --PPEVAECDLVYTFFHP 108 (109)
T ss_pred --ChheecCHHHHHhccc
Confidence 7999999999999864
No 58
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.82 E-value=1.7e-19 Score=122.75 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=86.5
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC--------CCCCCCCCCCCCCCCHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP--------ENVPSFPPKKLFPLSVI 68 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~--------~~~P~lP~K~~~~~~~~ 68 (128)
++++|+++.... +++.|.|+|. ..|.|.|||+||.+||.+|.+.||. ..+|.+|++...+.+.+
T Consensus 1 ~~~~V~~~~~~~----~~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~~~~~~ 76 (112)
T cd06890 1 VSASVESVLLED----NRYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTDVVNDS 76 (112)
T ss_pred CeEEEEEEEEEC----CEEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccCcchhH
Confidence 468999998773 5899999983 6899999999999999999999984 34899998887766899
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC-ccccChhHHHhhhh
Q psy8595 69 QIEERRTHLEKYMQSCKKLWNSLHR-DIRDSQSLGAFKTS 107 (128)
Q Consensus 69 ~ie~Rr~~Le~yL~~l~~~~~~~~~-~l~~s~~~~~FL~~ 107 (128)
++++|+.+|+.||+.++.. | .+.+|+.+.+|+..
T Consensus 77 ~~e~R~~~L~~Yl~~Ll~~-----p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 77 ISLKRLNDLNEYLNELINL-----PAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHHhccCHHHHHHcCc
Confidence 9999999999999999995 6 99999999999863
No 59
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.82 E-value=1.1e-19 Score=127.74 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=85.6
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEE--C------ceE-EEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC-C-CCHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHL--N------GEY-HCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF-P-LSVIQ 69 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v--~------~~~-~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~-~-~~~~~ 69 (128)
+.|.|.+.+..++ ++..|.+.+ + +.+ .|.||||||.+||+.|...++.+.+|++|+|... + .+.++
T Consensus 30 l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~~E~ 106 (140)
T cd06891 30 LRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNNEED 106 (140)
T ss_pred EEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCCHHH
Confidence 4678888888765 566666665 3 445 5889999999999999999999999999999875 3 58999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 70 IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 70 ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+++||.+||.||++|++ ||.|..++.++.||++
T Consensus 107 ~~~rr~~LqrfL~RV~~-----hP~L~~d~~l~~FLEs 139 (140)
T cd06891 107 ARKLKANLQRWFNRVCS-----DPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHhC-----ChhhccCHHHHHHhcc
Confidence 99999999999999999 7999999999999975
No 60
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.82 E-value=3.4e-19 Score=122.45 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=87.3
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCC---------CCCCCCCCCCCCC--C
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPE---------NVPSFPPKKLFPL--S 66 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~---------~~P~lP~K~~~~~--~ 66 (128)
+|+|-+++.... .++|++|.|.|. ..|.|+||||||.+||.+|...||.. .+|.||+|.+++. .
T Consensus 3 ~~~v~~~ekr~~-~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~ 81 (119)
T cd06888 3 DVKVIDVEKRRA-PSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHI 81 (119)
T ss_pred eEEEEEEEEEec-CCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchh
Confidence 567778888763 347779999993 57999999999999999999999972 4999999999964 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+++++|+..|+.||+.++++ ++.+++|+.+..|+..
T Consensus 82 ~~~~e~R~~~L~~Yl~~Ll~l----p~~Is~~~~v~~FF~p 118 (119)
T cd06888 82 RDVAVKRLKPIDEYCKALVRL----PPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CceeecCHHHHHhcCC
Confidence 669999999999999999997 6899999999999863
No 61
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.74 E-value=1.1e-17 Score=116.73 Aligned_cols=97 Identities=15% Similarity=0.268 Sum_probs=79.4
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHH--HcCCCCCCCCCCCCCCC-------
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKK--LYGPENVPSFPPKKLFP------- 64 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~--~~~~~~~P~lP~K~~~~------- 64 (128)
.|+|.+....+ .++.|+|+.+ ..+.|.||||||.+||++|.. .++++.+||+|+|..+.
T Consensus 4 ~i~vsD~~~~~----d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~~ 79 (141)
T cd07291 4 QIDIPDALSER----DKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQ 79 (141)
T ss_pred EEEeccccccC----CCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhhh
Confidence 56777775554 4799999863 567899999999999999997 67888899999998862
Q ss_pred --------C-CHHHHHHH--------------HHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 65 --------L-SVIQIEER--------------RTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 65 --------~-~~~~ie~R--------------r~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+ +.+|++.| +++||.||++|++ ||.+++++.++.||+.
T Consensus 80 kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~-----HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 80 KLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSS-----HPSLSKDRNFHIFLEY 140 (141)
T ss_pred hcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhh-----CCeeccCcchhhhccC
Confidence 1 34566655 3569999999999 6999999999999974
No 62
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.74 E-value=1.5e-17 Score=116.76 Aligned_cols=97 Identities=18% Similarity=0.335 Sum_probs=82.5
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHH--cCCCCCCCCCCCCCC--------
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKL--YGPENVPSFPPKKLF-------- 63 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~--~~~~~~P~lP~K~~~-------- 63 (128)
.|.|++.-... .++.|.|..+ ..+.|.||||||.+||.+|... ++++.+|++|+|..+
T Consensus 4 ~~~i~da~~~~----~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~ 79 (141)
T cd06892 4 QVDISDALSER----DKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQ 79 (141)
T ss_pred eeecccccccC----CeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceee
Confidence 45666654443 6999999873 6788999999999999999976 788889999999764
Q ss_pred -------CCCHHHHHHHHHHH---------------HHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 64 -------PLSVIQIEERRTHL---------------EKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 64 -------~~~~~~ie~Rr~~L---------------e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.++.+++++|+.+| +.||++++. ||.+.+++.++.||+.
T Consensus 80 klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~-----HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 80 KLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLAS-----HPVLRNDANFRVFLEY 140 (141)
T ss_pred ecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc-----CCeeecCHhHHhhhcC
Confidence 15788999999999 589999999 6999999999999974
No 63
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.74 E-value=2e-17 Score=115.35 Aligned_cols=100 Identities=16% Similarity=0.304 Sum_probs=78.0
Q ss_pred CEEEeCCcEEeecC---CC-CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCC-----------
Q psy8595 1 MHFSIPDTQQLCDD---SG-KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKL----------- 62 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~---~g-~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~----------- 62 (128)
|++.|-+++..+.. .. .|++|.|++. ..|.|.|||+||.+||+.|.. ++...-.+||+|.+
T Consensus 4 i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~ 82 (135)
T cd07296 4 IKARVLEVERFTSTSDVKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGE 82 (135)
T ss_pred eEEEEEEEEEeeccccccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhcccccccc
Confidence 45677777776655 23 9999999984 589999999999999999998 54321225778776
Q ss_pred ------CCC--CHHHHH----HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 63 ------FPL--SVIQIE----ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 63 ------~~~--~~~~ie----~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
+.. +....| +|+++||+||+.|+.+ +..++++++.+||+
T Consensus 83 ~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~-----~~~Rn~~a~~eFLe 133 (135)
T cd07296 83 PRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKM-----PMYRNYHATMEFID 133 (135)
T ss_pred ccccccCCCCCCccccccchHHHHHHHHHHHHHHhcC-----hhhcCCHHHHhhee
Confidence 321 222444 8999999999999994 89999999999996
No 64
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.71 E-value=4.7e-17 Score=113.43 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=79.0
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHH--cCCCCCCCCCCCCCCCC------
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKL--YGPENVPSFPPKKLFPL------ 65 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~--~~~~~~P~lP~K~~~~~------ 65 (128)
.|.|++....+| .+.|.|+.+ ..+.|.||||||.+||++|... ++++.+||+|+|..++.
T Consensus 4 ~v~isD~~~~~d----~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~~ 79 (141)
T cd07292 4 QVDISDALSERD----KVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQ 79 (141)
T ss_pred EEEcccccccCC----ceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHHH
Confidence 577777765554 499999873 5688999999999999999965 78888999999987731
Q ss_pred ---------C-HHHHH--------------HHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 66 ---------S-VIQIE--------------ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 66 ---------~-~~~ie--------------~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+ ..+.+ +|+..+|.||+++++ ||.+++++.++.||+-
T Consensus 80 klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~-----HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 80 KLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAA-----HPILRKDLNFHVFLEY 140 (141)
T ss_pred hhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-----CCccccCcchhheecc
Confidence 1 23332 677899999999999 6999999999999973
No 65
>KOG2273|consensus
Probab=99.66 E-value=5.5e-16 Score=128.20 Aligned_cols=101 Identities=22% Similarity=0.404 Sum_probs=87.8
Q ss_pred EEeCCcE-EeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC------CCH
Q psy8595 3 FSIPDTQ-QLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP------LSV 67 (128)
Q Consensus 3 v~Ip~~~-~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~------~~~ 67 (128)
|.+++.+ ...++.++|+.|.|... ....|.||||||..||..|...||+..+|++|+|.... +++
T Consensus 112 i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~~s~ 191 (503)
T KOG2273|consen 112 ITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDSFSD 191 (503)
T ss_pred eecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCCCCH
Confidence 5556666 44444449999999973 45789999999999999999999999999999998763 488
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
++++.||.+|+.||+.++. ||.+++++.++.||+..
T Consensus 192 ef~e~rr~~L~~~l~r~~~-----hP~l~~~~~~~~FL~~~ 227 (503)
T KOG2273|consen 192 EFIEKRRKALERFLNRLSL-----HPVLSNDEDFRLFLESD 227 (503)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CcccccCHHHHHHhccc
Confidence 9999999999999999999 79999999999999876
No 66
>KOG3784|consensus
Probab=99.62 E-value=1.6e-15 Score=120.61 Aligned_cols=102 Identities=44% Similarity=0.709 Sum_probs=95.1
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEECceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKY 80 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~y 80 (128)
|+++||.+.... +...|++|.|++||..++..|||++..||..|++++.+..+|.||+|+.|.+++.-+++||.+||+|
T Consensus 1 ~~~~v~~t~~~~-~~~~ytaynih~nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L~~~~~~~rr~~leqy 79 (407)
T KOG3784|consen 1 MHFSVPDTSYLT-SLERYTAYNIHINGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKLTPQQLDSRRRGLEQY 79 (407)
T ss_pred CCcCccchhhcc-CcccccceeeeecceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCCChhhhHHHHHHHHHH
Confidence 688999999887 3339999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 81 MQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 81 L~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
|+++++ ++.+..+..+..||...
T Consensus 80 lqa~~q-----~~~l~~s~~~~~fL~~~ 102 (407)
T KOG3784|consen 80 LQAVCQ-----DPVLARSELVQKFLMRA 102 (407)
T ss_pred HHHHhc-----CccccchhhhhHHHHhc
Confidence 999999 69999999999999643
No 67
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.58 E-value=1.8e-14 Score=98.99 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=77.0
Q ss_pred CCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC---------CCCCCCCCCCCCCCC---HHHHHHHHHHHHH
Q psy8595 16 GKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP---------ENVPSFPPKKLFPLS---VIQIEERRTHLEK 79 (128)
Q Consensus 16 g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~---------~~~P~lP~K~~~~~~---~~~ie~Rr~~Le~ 79 (128)
+++.+|.|.|. ..+.++|||+||.+||.+|...||. ..+|.||.+.+++.+ .+.-+.|+..|+.
T Consensus 17 ~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~~~~~~~~~a~~R~~~L~~ 96 (121)
T cd06889 17 RRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLGSLKGSTSRSLARLKLLET 96 (121)
T ss_pred cceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccCCcccccchHHHHHHHHHH
Confidence 37889999983 6789999999999999999999995 349999999998643 3357899999999
Q ss_pred HHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 80 YMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 80 yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
|++.++++ ++.|+.|+.+..|+..
T Consensus 97 Y~~~Ll~l----p~~Is~~~~V~~FF~p 120 (121)
T cd06889 97 YCQELLRL----DEKVSRSPEVIQFFAP 120 (121)
T ss_pred HHHHHHcC----CcceecCHHHHHhcCC
Confidence 99999998 7999999999999863
No 68
>KOG2528|consensus
Probab=99.58 E-value=4.5e-15 Score=119.47 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=85.3
Q ss_pred EeCCcEEeecCCC--CEEEEEEEEC--ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHHH
Q psy8595 4 SIPDTQQLCDDSG--KYTGYNLHLN--GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHLE 78 (128)
Q Consensus 4 ~Ip~~~~~~~~~g--~y~~Y~I~v~--~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~Le 78 (128)
.|-+......-+| +|+.|.++-. ..| |.|||.+|.+||++|...|+.+.+|+||.|..-+ +..+||+.||++|+
T Consensus 189 ~v~~p~k~sk~kg~ks~i~y~ltpt~t~~~-v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~ 267 (490)
T KOG2528|consen 189 VVDDPKKESKFKGLKSYIAYQLTPTHTNIS-VSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVTGRFEEDFIEKRRKGLQ 267 (490)
T ss_pred EecCcccccccccchheeEeeecccccCcc-hhhcccccHHHHHHHHhhcccccCCCCCccccccchhHHHHHHHHHHHH
Confidence 3444444433357 9999999852 344 8899999999999999999999999999999875 79999999999999
Q ss_pred HHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 79 KYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 79 ~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
.|++.+|+ ||.+.+|+.+++||++.
T Consensus 268 ~wm~~~~~-----hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 268 WWMNHMCR-----HPVLSQCEVFQHFLTCP 292 (490)
T ss_pred HHHHHhhc-----chHhhhhHHHHHHHcCC
Confidence 99999999 69999999999999985
No 69
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.53 E-value=7.3e-14 Score=92.24 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=71.9
Q ss_pred EEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q psy8595 20 GYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDI 95 (128)
Q Consensus 20 ~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l 95 (128)
.|.|+|. ..-.|.|+|.||.+||++|++.||...+|.||.+..++.+.. -++|.+.|+.|++.+++. ++++
T Consensus 14 lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~~~~~-~~~R~~~L~~Yl~~Ll~~----~~eV 88 (101)
T cd06896 14 LYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLPFTDS-DHKRVRDLNHYLEQLLSG----SREV 88 (101)
T ss_pred EEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCccccCcccH-HHHHHHHHHHHHHHHHcc----CHHH
Confidence 4888882 556788999999999999999999999999999977665433 467999999999999997 7999
Q ss_pred ccChhHHHhhhh
Q psy8595 96 RDSQSLGAFKTS 107 (128)
Q Consensus 96 ~~s~~~~~FL~~ 107 (128)
++|+.+..|+.+
T Consensus 89 a~sd~v~sFF~~ 100 (101)
T cd06896 89 ANSDCVLSFFLS 100 (101)
T ss_pred hcchHHHHHhhc
Confidence 999999999853
No 70
>KOG1259|consensus
Probab=99.42 E-value=6.8e-13 Score=104.30 Aligned_cols=86 Identities=29% Similarity=0.414 Sum_probs=68.5
Q ss_pred CCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhhccc
Q psy8595 15 SGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTHLEKYMQSCKKLWNS 90 (128)
Q Consensus 15 ~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~Le~yL~~l~~~~~~ 90 (128)
.|+|++|.|+|. -.|.|.|||+||..||++|..... +.---||||++++ .++.++|+|+.+|+-|||.++.-.
T Consensus 24 ~~~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~ig~~~~s~~e~r~~~leiylq~ll~~f-- 100 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQELLIYF-- 100 (490)
T ss_pred cCceEEEEEEEEecceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhcCCCChhHHHHHHHHHHHHHHHHHHHc--
Confidence 359999999984 579999999999999999988765 2334589999996 689999999999999999988731
Q ss_pred CCCccccChhHHHhhh
Q psy8595 91 LHRDIRDSQSLGAFKT 106 (128)
Q Consensus 91 ~~~~l~~s~~~~~FL~ 106 (128)
|.. .-.++.+||.
T Consensus 101 --~~~-~pr~la~fl~ 113 (490)
T KOG1259|consen 101 --RTE-LPRALAEFLD 113 (490)
T ss_pred --ccc-CHHHHHHHhc
Confidence 211 1245667764
No 71
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.33 E-value=5.7e-12 Score=104.88 Aligned_cols=91 Identities=29% Similarity=0.358 Sum_probs=75.3
Q ss_pred EEeCCcEEeecCCC-CEEEEEEEEC--------ceE---EEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC------C
Q psy8595 3 FSIPDTQQLCDDSG-KYTGYNLHLN--------GEY---HCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF------P 64 (128)
Q Consensus 3 v~Ip~~~~~~~~~g-~y~~Y~I~v~--------~~~---~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~------~ 64 (128)
++.|+.....-+.+ +|+.|.|.-. ... .|.||||||..||..|...+|.+.+|++|+|.+. +
T Consensus 135 ~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~~~ 214 (524)
T COG5391 135 VSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDR 214 (524)
T ss_pred cccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccccc
Confidence 45566665552233 8999998741 223 7899999999999999999999999999999998 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccC
Q psy8595 65 LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDS 98 (128)
Q Consensus 65 ~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s 98 (128)
++++++++|+..|+.|++.++. ||.+.++
T Consensus 215 ~~~~~i~~r~~~L~~~~~~~~~-----hp~lsn~ 243 (524)
T COG5391 215 FSDEFIEERRQSLQNFLRRVST-----HPLLSNY 243 (524)
T ss_pred cchHHHHHHHHHHHHHHHHHhc-----Ccccccc
Confidence 6999999999999999999999 5887763
No 72
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.33 E-value=1.3e-11 Score=85.10 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=74.6
Q ss_pred CEEEeCCcEEeecCCC--CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCC---------------------CCC
Q psy8595 1 MHFSIPDTQQLCDDSG--KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGP---------------------ENV 54 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g--~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~---------------------~~~ 54 (128)
|++.|-+++..+.+.. .-++|+|++. -.|.|.|||.+|.+||++|...-.. ..+
T Consensus 4 i~~~V~~~er~~s~s~~~~~~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~m 83 (130)
T cd07297 4 VTAKVENTERYTTGSKVHVCTLYTVRLTHGEFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEM 83 (130)
T ss_pred eEEEEEEEEEeecccccccceeEEEEEecCceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcC
Confidence 4566777777765443 4479999984 5799999999999999999873221 234
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhh
Q psy8595 55 PSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKT 106 (128)
Q Consensus 55 P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~ 106 (128)
|.||...-. . .+-+..|++.||+||+.|+.+ +.-++.++..+||+
T Consensus 84 P~LP~~~~~-~-~~~~~sr~kqLE~YLn~LL~~-----~~YRn~~atleFLe 128 (130)
T cd07297 84 PSLPGTDRE-A-SRRTASKPKYLENYLNNLLEN-----SFYRNYHAMMEFLA 128 (130)
T ss_pred CCCCCCCch-h-hhhhhhHHHHHHHHHHHHhcc-----hhhcCChhheeeee
Confidence 555544322 1 456788999999999999995 88899999999986
No 73
>KOG0905|consensus
Probab=98.66 E-value=4.6e-08 Score=86.84 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCEEEEEEEEC-----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhc
Q psy8595 16 GKYTGYNLHLN-----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--LSVIQIEERRTHLEKYMQSCKKLW 88 (128)
Q Consensus 16 g~y~~Y~I~v~-----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--~~~~~ie~Rr~~Le~yL~~l~~~~ 88 (128)
+++..|.|+|. ..-.+.|-|.||.+||++|+..||...+|.||.....+ .-..+.++|...|+.||..++..
T Consensus 1390 nK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grsnikaVA~kR~~~ln~yl~~L~na- 1468 (1639)
T KOG0905|consen 1390 NKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRSNIKAVAEKRIIELNKYLISLFNA- 1468 (1639)
T ss_pred CceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeecccchhHHHHHHHHHHHHHHHHHhcC-
Confidence 48889999993 33457899999999999999999999999999887765 34678999999999999999996
Q ss_pred ccCCCccccChhHHHhhhhhHH
Q psy8595 89 NSLHRDIRDSQSLGAFKTSLVK 110 (128)
Q Consensus 89 ~~~~~~l~~s~~~~~FL~~~~~ 110 (128)
.+++++|+.+..|+.....
T Consensus 1469 ---s~EVa~cDlVyTFFhpllr 1487 (1639)
T KOG0905|consen 1469 ---SDEVAHCDLVYTFFHPLLR 1487 (1639)
T ss_pred ---Cchhhccceeeeeechhhh
Confidence 7899999999999987654
No 74
>KOG2101|consensus
Probab=98.48 E-value=3.8e-07 Score=72.86 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=55.3
Q ss_pred CEEEEEEEEC---c-----eEEEEechhhHHHHHHHHHHHc-CCC--CCCCCC---CCCCC--CCCHHHHHHHHHHHHHH
Q psy8595 17 KYTGYNLHLN---G-----EYHCSVRYKQLHNFNEQLKKLY-GPE--NVPSFP---PKKLF--PLSVIQIEERRTHLEKY 80 (128)
Q Consensus 17 ~y~~Y~I~v~---~-----~~~v~rRYseF~~L~~~L~~~~-~~~--~~P~lP---~K~~~--~~~~~~ie~Rr~~Le~y 80 (128)
+|++|.+.+. . .|.|+|||+||..||.+|++.+ |.. ..|..+ .++.+ +++..++.+|+.+++.|
T Consensus 134 ~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 213 (362)
T KOG2101|consen 134 SFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEALEEF 213 (362)
T ss_pred ceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhhHHHH
Confidence 9999999984 3 4999999999999999999999 553 334455 23333 36899999999999999
Q ss_pred H--HHHH
Q psy8595 81 M--QSCK 85 (128)
Q Consensus 81 L--~~l~ 85 (128)
| +...
T Consensus 214 l~~~f~~ 220 (362)
T KOG2101|consen 214 LSLQFKD 220 (362)
T ss_pred HHhhhhh
Confidence 9 6654
No 75
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=98.27 E-value=9.3e-06 Score=54.83 Aligned_cols=82 Identities=11% Similarity=0.166 Sum_probs=60.2
Q ss_pred CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy8595 17 KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGP---ENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNS 90 (128)
Q Consensus 17 ~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~---~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~ 90 (128)
+=++|.|.|. ++|.|.|+|-+|..|.+.|-.+.=. ..+++||++....-+++.+ ...|.+||.++..+
T Consensus 26 ~e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l~~~~~~v---~~~l~~YL~RlS~I--- 99 (115)
T cd07298 26 KELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSLKDSPESV---TQMLMAYLSRLSAI--- 99 (115)
T ss_pred CCeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCcccccccHHHH---HHHHHHHHHHHHHH---
Confidence 6678888873 8999999999999999999887211 2488999876554455655 46899999999886
Q ss_pred CCCccccChhHHHhh
Q psy8595 91 LHRDIRDSQSLGAFK 105 (128)
Q Consensus 91 ~~~~l~~s~~~~~FL 105 (128)
.....+|-.+-.++
T Consensus 100 -a~~~~nCGPvLtWl 113 (115)
T cd07298 100 -AGNKINCGPALTWM 113 (115)
T ss_pred -hhCCccchhcceee
Confidence 34555555544444
No 76
>KOG4773|consensus
Probab=98.18 E-value=2.8e-06 Score=67.39 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=73.5
Q ss_pred CEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC---------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8595 17 KYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP---------ENVPSFPPKKLFPLSVIQIEERRTHLEKYMQS 83 (128)
Q Consensus 17 ~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~---------~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ 83 (128)
++.+|.|++. ....|+|||.||.++|..|.+.++. +.+|+||.+.++.+..+-.|+|...|+.|+..
T Consensus 37 ~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfkqe~Ae~r~~~ln~y~e~ 116 (386)
T KOG4773|consen 37 SHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFKQEIAEERIPALNAYCEW 116 (386)
T ss_pred hheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechhhhhhhhhhHHHHHHHHH
Confidence 6889999885 5678999999999999999999985 56899999999998999999999999999999
Q ss_pred HHhhcccCCCccccChhHHHhh
Q psy8595 84 CKKLWNSLHRDIRDSQSLGAFK 105 (128)
Q Consensus 84 l~~~~~~~~~~l~~s~~~~~FL 105 (128)
+++. +--+.-+|.+..|.
T Consensus 117 Llsl----Pi~~l~~p~l~~ff 134 (386)
T KOG4773|consen 117 LLSL----PIGRLGGPGLRPFF 134 (386)
T ss_pred HHhc----chhhcCCCCceeee
Confidence 9996 34566677777665
No 77
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=97.99 E-value=7e-05 Score=50.43 Aligned_cols=82 Identities=9% Similarity=0.168 Sum_probs=59.1
Q ss_pred CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy8595 17 KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGP---ENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNS 90 (128)
Q Consensus 17 ~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~---~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~ 90 (128)
+-+.|.|+|. ++|.|.|.|-+|..|.+.|-.+.=. ..+++||+.-..+-.++ .=...|..||.++..+
T Consensus 25 k~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~~~~~~---~~~~~l~~YL~RlS~I--- 98 (114)
T cd07278 25 KELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIEKREQQ---NLHQVLSDYLKRLSSI--- 98 (114)
T ss_pred CceEEEEEEEeCCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccccchHH---HHHHHHHHHHHHHHHH---
Confidence 8999999994 8999999999999999998776332 35677777543222333 3346899999999886
Q ss_pred CCCccccChhHHHhh
Q psy8595 91 LHRDIRDSQSLGAFK 105 (128)
Q Consensus 91 ~~~~l~~s~~~~~FL 105 (128)
-....+|-.+-.+|
T Consensus 99 -a~~~inCGPvLtWl 112 (114)
T cd07278 99 -AGNLLNCGPVLNWL 112 (114)
T ss_pred -hcCcccchhcceee
Confidence 34556665555554
No 78
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=97.87 E-value=9.1e-05 Score=49.77 Aligned_cols=82 Identities=9% Similarity=0.133 Sum_probs=57.5
Q ss_pred CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy8595 17 KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGP---ENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNS 90 (128)
Q Consensus 17 ~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~---~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~ 90 (128)
+-++|.|+|. ++|.|.|.|-+|..|.+.|-...=. ..+++||+-.-..... +.=...|..||.++..+
T Consensus 24 k~~~flv~V~cqgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~~~~---~~~~~~l~~YL~RlS~I--- 97 (113)
T cd07299 24 KDLVFLVQVTCQGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIGDRL---QILTPLLSEYLNRLTGI--- 97 (113)
T ss_pred CceEEEEEEEecCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccccchH---HHHHHHHHHHHHHHHHH---
Confidence 8899999984 7999999999999999988765322 3567777663222222 33446899999999886
Q ss_pred CCCccccChhHHHhh
Q psy8595 91 LHRDIRDSQSLGAFK 105 (128)
Q Consensus 91 ~~~~l~~s~~~~~FL 105 (128)
-....+|-.+-.++
T Consensus 98 -a~~~inCGPVLtWm 111 (113)
T cd07299 98 -VDSNLNCGPVLTWM 111 (113)
T ss_pred -hcCCccccccceee
Confidence 34455555444443
No 79
>PLN02866 phospholipase D
Probab=91.60 E-value=0.72 Score=42.07 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=59.5
Q ss_pred CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHc-------------------CC---------------CCCC----
Q psy8595 17 KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLY-------------------GP---------------ENVP---- 55 (128)
Q Consensus 17 ~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~-------------------~~---------------~~~P---- 55 (128)
--..|+|++. =.|.+.+.-|+..-||-.|++.. +. ..+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1068)
T PLN02866 31 VLLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVPLHHD 110 (1068)
T ss_pred eEEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccccccccccccccch
Confidence 3568999875 56999999999888888886641 00 0111
Q ss_pred ------CCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 56 ------SFPPKKLF-------PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 56 ------~lP~K~~~-------~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
..|+...+ +-.+.+...++.+||+||+.++. +..+.+++.+..||+-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~-----~~~~~n~~~~~~Flev 170 (1068)
T PLN02866 111 ESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLG-----NLDIVNSREVCKFLEV 170 (1068)
T ss_pred hhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhc-----cchhcCCHhhhhheee
Confidence 12222111 22445556666679999999999 6999999999999983
No 80
>KOG1660|consensus
Probab=82.49 E-value=3.7 Score=33.31 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=55.0
Q ss_pred ceEEEEechhhHHHHHHHHHHH--cCCCCCCCCCCCCCCC---------------CCHHHHHHHHHHH------------
Q psy8595 27 GEYHCSVRYKQLHNFNEQLKKL--YGPENVPSFPPKKLFP---------------LSVIQIEERRTHL------------ 77 (128)
Q Consensus 27 ~~~~v~rRYseF~~L~~~L~~~--~~~~~~P~lP~K~~~~---------------~~~~~ie~Rr~~L------------ 77 (128)
....|.|---+|.+||..+... +.+..+|+-|++..+- ++.+-.-+-+..|
T Consensus 55 ~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTv 134 (399)
T KOG1660|consen 55 PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTV 134 (399)
T ss_pred CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhh
Confidence 4566889999999999887664 4456788888887651 2222222333333
Q ss_pred ---HHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 78 ---EKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 78 ---e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
+.||++|+. ||.++.+..+.-||+..
T Consensus 135 amhEvfl~Rlaa-----hPvlr~d~nf~vflEy~ 163 (399)
T KOG1660|consen 135 AMHEVFLRRLAA-----HPVLRLDQNFSVFLEYD 163 (399)
T ss_pred ccHHHHHHHHhc-----CCeeecccchhhhhhhc
Confidence 368899999 79999999999999754
No 81
>PF14980 TIP39: TIP39 peptide
Probab=64.39 E-value=7.9 Score=22.30 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8595 72 ERRTHLEKYMQSCKKL 87 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~ 87 (128)
|||+=|+.||+.++-+
T Consensus 34 ER~~WLnSYMqkLLv~ 49 (51)
T PF14980_consen 34 ERQKWLNSYMQKLLVV 49 (51)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 7889999999998863
No 82
>PRK11718 anti-RNA polymerase sigma 70 factor; Provisional
Probab=47.01 E-value=48 Score=23.99 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhhhccccccc
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKGTVKETFS 121 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~~~~~~~~~ 121 (128)
..++++||..|..|.+-.---|......+..-..++.|=+...+|+.+.=.+-|.
T Consensus 20 D~WL~~Rq~LLV~Yc~L~gl~P~~~~~~~~~~~~l~~FC~~LVDYvSaGHFeIYe 74 (161)
T PRK11718 20 DRWLHERQQLLVAYCKLAGIKPGKESLSLPNEKALDDFCQLLVDYVSAGHFEIYE 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccCCCHHHHHHHHHHHHHHHcccchHHHH
Confidence 6789999999999998653322111124555577888888888887665444333
No 83
>PF04353 Rsd_AlgQ: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; InterPro: IPR007448 This family includes bacterial transcriptional regulators that are thought to act through an interaction with the conserved region 4 of the sigma(70) subunit of RNA polymerase. The Pseudomonas aeruginosa homologue, AlgQ, positively regulates virulence gene expression and is associated with the mucoid phenotype observed in P. aeruginosa isolates from cystic fibrosis patients.; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_A.
Probab=45.25 E-value=43 Score=23.98 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhhhccccccch
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKGTVKETFSG 122 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~~~~~~~~~~ 122 (128)
..++++||..|-.|.+-.--.|..-.........++.|=+...+|+.+.=.+-|..
T Consensus 20 D~WL~~Rq~Llv~Yc~L~gl~p~~~~~~~~~~~~l~~FCq~LVDYvSaGHFeIYe~ 75 (153)
T PF04353_consen 20 DRWLEERQQLLVAYCKLAGLKPYKESLTLPSEEALQNFCQQLVDYVSAGHFEIYEQ 75 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHS-------------HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhHhcCCCCccccCCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 67899999999999987654211001135566888999888888877664443333
No 84
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=40.86 E-value=24 Score=17.87 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q psy8595 73 RRTHLEKYMQS 83 (128)
Q Consensus 73 Rr~~Le~yL~~ 83 (128)
|+..|+.||+.
T Consensus 4 RK~SLqRFLeK 14 (27)
T PF09425_consen 4 RKASLQRFLEK 14 (27)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666666653
No 85
>KOG3540|consensus
Probab=35.09 E-value=53 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8595 71 EERRTHLEKYMQSCKKL 87 (128)
Q Consensus 71 e~Rr~~Le~yL~~l~~~ 87 (128)
++||.+|++||+++-.+
T Consensus 326 drrR~Ale~ylaALqa~ 342 (615)
T KOG3540|consen 326 DRRRDALENYLAALQAD 342 (615)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 47889999999999985
No 86
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=35.02 E-value=61 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhh
Q psy8595 76 HLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLK 113 (128)
Q Consensus 76 ~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~ 113 (128)
.-+.|+|+++.+ |.+..|+.+++-+......++
T Consensus 18 lydAF~Q~l~~L-----P~la~S~~~KD~I~q~m~~F~ 50 (120)
T PRK15321 18 LYDAFYQRLLAL-----PESASSETLKDSIYQEMNAFK 50 (120)
T ss_pred HHHHHHHHHHhC-----CcccCcHHHHHHHHHHHHHhC
Confidence 467899999997 668889888876655444444
No 87
>PF14165 YtzH: YtzH-like protein
Probab=34.61 E-value=69 Score=20.78 Aligned_cols=46 Identities=15% Similarity=0.382 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhhhc------------cccccchhhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKGT------------VKETFSGWVEEL 127 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~~~------------~~~~~~~~~~~~ 127 (128)
..+++-++.++. ++.+ ++.++.-|+....|.+.. -++-.+-|++++
T Consensus 29 EQieRLvksLm~-----n~~i--~~~ik~~L~~Iy~ysq~G~~~~~l~~Hi~~~q~~l~qWv~~i 86 (87)
T PF14165_consen 29 EQIERLVKSLMA-----NPNI--DADIKQTLEEIYSYSQNGKYAQSLDNHIEFHQSNLSQWVNDI 86 (87)
T ss_pred HHHHHHHHHHHc-----CCCc--CHHHHHHHHHHHHHHccCccccchhhhhHhhHHHHHHHHHhc
Confidence 367888888888 7888 888999999887776552 235778888875
No 88
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=31.92 E-value=28 Score=17.99 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=9.0
Q ss_pred ccccccchhhhh
Q psy8595 115 TVKETFSGWVEE 126 (128)
Q Consensus 115 ~~~~~~~~~~~~ 126 (128)
..+..||+|+-|
T Consensus 12 ~~~~NFSaWV~d 23 (30)
T PF13132_consen 12 EGSGNFSAWVKD 23 (30)
T ss_pred ccCcChHHHHHH
Confidence 336789999865
No 89
>KOG1329|consensus
Probab=31.35 E-value=85 Score=28.65 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=55.0
Q ss_pred CEEEEEEEE---CceEEEEechhhHHHHHHHHHHHcCCCCC---------------CCCCCCCCCCCCHHHHHHHHHHHH
Q psy8595 17 KYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENV---------------PSFPPKKLFPLSVIQIEERRTHLE 78 (128)
Q Consensus 17 ~y~~Y~I~v---~~~~~v~rRYseF~~L~~~L~~~~~~~~~---------------P~lP~K~~~~~~~~~ie~Rr~~Le 78 (128)
.-..|.+.. +-.|.+.+-+..+..+|..|...-....+ |..|..... -.-+++..++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~~~~e 139 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLN-----SSMEKRKTLE 139 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcc-----cchhhhhhcc
Confidence 335666665 25699999999999999888664322122 222222221 1145566799
Q ss_pred HHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 79 KYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 79 ~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
.||+.++. .+.+.+.-.+.+|++..
T Consensus 140 ~Ylt~~l~-----~~~~~~t~~~~~f~e~s 164 (887)
T KOG1329|consen 140 NYLTVVLH-----KARYRRTHVIYEFLENS 164 (887)
T ss_pred chheeeec-----hhhhhchhhhhcccccc
Confidence 99999999 48888888888997643
No 90
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=30.54 E-value=50 Score=18.93 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8595 71 EERRTHLEKYMQSCKK 86 (128)
Q Consensus 71 e~Rr~~Le~yL~~l~~ 86 (128)
+.|-+.|+.|+..++.
T Consensus 20 ~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 20 DSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566789999998876
No 91
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=30.19 E-value=52 Score=19.49 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 65 LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 65 ~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
....++..|......|++.++. +..+..|+++
T Consensus 36 ~~~~Fl~~~~~~~~~Fl~~f~~-----------TQ~F~~Fi~~ 67 (68)
T PF03455_consen 36 DKEAFLKSRPKESRPFLKAFLE-----------TQMFEQFIEE 67 (68)
T ss_dssp -HHHHS--SSHHHHHHHHHHTT------------HHHHHHHHH
T ss_pred ccHHHHhcCChhHhHHHHHHHH-----------HHhHHHHHhc
Confidence 4578999988888899988887 5777788764
No 92
>COG3160 Rsd Regulator of sigma D [Transcription]
Probab=29.69 E-value=1.3e+02 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-ccCCCccccChhHHHhhhhhHHhhhhcccccc
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLW-NSLHRDIRDSQSLGAFKTSLVKYLKGTVKETF 120 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~-~~~~~~l~~s~~~~~FL~~~~~~~~~~~~~~~ 120 (128)
...+.+|+..|..|.+-+--.| ++....+ +-..+..|-+...+|+.+.-.+-|
T Consensus 20 D~WLh~Rk~llvayc~l~gikp~ke~~~pl-nakaL~~FCq~LvDYlSaGHF~iY 73 (162)
T COG3160 20 DRWLHVRKHLLVAYCNLVGIKPGKESYMPL-NAKALDDFCQSLVDYLSAGHFSIY 73 (162)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccccCCC-CHHHHHHHHHHHHHHHhccchHHH
Confidence 5688899999999988665532 1111134 778889998888888776644333
No 93
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.29 E-value=1.5e+02 Score=24.21 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=42.4
Q ss_pred EEeCCcEEeecCCCCEEEEEEEECceEEEEechhhHHHHHHHHHHH--cC---CCCCCCCCCCCCC--CCCHHHHHHHHH
Q psy8595 3 FSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKL--YG---PENVPSFPPKKLF--PLSVIQIEERRT 75 (128)
Q Consensus 3 v~Ip~~~~~~~~~g~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~--~~---~~~~P~lP~K~~~--~~~~~~ie~Rr~ 75 (128)
|-|-....+-...|.|-.|.-.+.... +---|-.|.+|.++|.+. |. ...+|.+|.+.-+ +.+. +
T Consensus 76 v~v~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~g-------A 147 (438)
T PRK00286 76 VLVRGKVSLYEPRGDYQLIVEEIEPAG-IGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTG-------A 147 (438)
T ss_pred EEEEEEEEEECCCCCEEEEEEEeeeCC-ccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCcc-------H
Confidence 333333333344445555544443211 245677788888888775 21 2568889887554 2222 3
Q ss_pred HHHHHHHHHHh
Q psy8595 76 HLEKYMQSCKK 86 (128)
Q Consensus 76 ~Le~yL~~l~~ 86 (128)
+++++++.+-.
T Consensus 148 a~~D~~~~~~~ 158 (438)
T PRK00286 148 AIRDILTVLRR 158 (438)
T ss_pred HHHHHHHHHHh
Confidence 66677776665
No 94
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.40 E-value=1.5e+02 Score=24.54 Aligned_cols=77 Identities=12% Similarity=0.205 Sum_probs=44.3
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEECceEEEEechhhHHHHHHHHHHH--cC---CCCCCCCCCCCCC--CCCHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKL--YG---PENVPSFPPKKLF--PLSVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~--~~---~~~~P~lP~K~~~--~~~~~~ie~Rr 74 (128)
+|-|-....+-...|.|-.|.-.+... .+---|-.|.+|.++|.+. |. ..++|.+|.+.-+ +-+.
T Consensus 69 ~V~v~g~v~~y~~~G~~ql~v~~i~~~-G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~------- 140 (432)
T TIGR00237 69 QVLVRGGISVYEPRGDYQIICFEMQPA-GEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTG------- 140 (432)
T ss_pred EEEEEEEEEEECCCCcEEEEEEEeccC-ChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCcc-------
Confidence 344444444444445555555554421 2446788889999998875 21 2568888887554 2222
Q ss_pred HHHHHHHHHHHh
Q psy8595 75 THLEKYMQSCKK 86 (128)
Q Consensus 75 ~~Le~yL~~l~~ 86 (128)
.+++++++.+-.
T Consensus 141 aa~~D~~~~~~~ 152 (432)
T TIGR00237 141 AALADILHILKR 152 (432)
T ss_pred HHHHHHHHHHHh
Confidence 356666666554
No 95
>PF00969 MHC_II_beta: Class II histocompatibility antigen, beta domain; InterPro: IPR000353 Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response. Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) []. MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane []. A groove in the structure acts as the peptide-binding site. This entry represents the N-terminal domain (also called beta-1 domain) of the beta chain. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane, 0042613 MHC class II protein complex; PDB: 2WBJ_B 1BX2_E 1YMM_B 2Q6W_E 3C5J_B 2P24_B 2PXY_D 1K2D_B 1U3H_H 2Z31_D ....
Probab=26.82 E-value=44 Score=20.75 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy8595 64 PLSVIQIEERRTHLEKYMQSC 84 (128)
Q Consensus 64 ~~~~~~ie~Rr~~Le~yL~~l 84 (128)
|.++++|+.||.+.+.|.+.=
T Consensus 50 N~~~~~le~~ra~vd~~C~~N 70 (75)
T PF00969_consen 50 NSQKEFLEQRRAAVDTYCRHN 70 (75)
T ss_dssp HTSHHHHHHHHHHHHHTHHHH
T ss_pred CCcchHHHHHHHhccceeeCC
Confidence 468999999999999887653
No 96
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=25.55 E-value=1.4e+02 Score=17.03 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q psy8595 53 NVPSFPPKKLF 63 (128)
Q Consensus 53 ~~P~lP~K~~~ 63 (128)
-+|+||++..+
T Consensus 6 ~lP~fP~~HTY 16 (51)
T PF10406_consen 6 WLPPFPPPHTY 16 (51)
T ss_pred cCCCCCCCccc
Confidence 48999999775
No 97
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=23.47 E-value=1.5e+02 Score=20.00 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCC----------CCCHHHHHHHHHHHHHHHHHHHh
Q psy8595 38 LHNFNEQLKKLYGPENVPSFPPKKLF----------PLSVIQIEERRTHLEKYMQSCKK 86 (128)
Q Consensus 38 F~~L~~~L~~~~~~~~~P~lP~K~~~----------~~~~~~ie~Rr~~Le~yL~~l~~ 86 (128)
..++...|++.+|......|+.--|. .+++.|+++=|..|+.+=+.|=.
T Consensus 12 ~neF~~~L~e~~p~l~t~~ltR~eW~~IRr~mGKPRRfS~aF~~eER~~Le~~R~~iR~ 70 (109)
T PF06584_consen 12 DNEFQECLRESFPLLKTRKLTRVEWQKIRRSMGKPRRFSPAFLEEEREELERKRQKIRQ 70 (109)
T ss_pred hhHHHHHHHHhCCcccCCccCHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788887767777764442 26999999999999998776655
No 98
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=21.96 E-value=85 Score=19.11 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHh
Q psy8595 75 THLEKYMQSCKK 86 (128)
Q Consensus 75 ~~Le~yL~~l~~ 86 (128)
..||.||++.+.
T Consensus 3 ~klq~yLr~~f~ 14 (63)
T PF11324_consen 3 KKLQAYLRRTFG 14 (63)
T ss_pred HHHHHHHHHHhC
Confidence 368999999997
No 99
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=21.11 E-value=1.1e+02 Score=19.15 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHcCCCCCC-CCCCC
Q psy8595 35 YKQLHNFNEQLKKLYGPENVP-SFPPK 60 (128)
Q Consensus 35 YseF~~L~~~L~~~~~~~~~P-~lP~K 60 (128)
|.+|..+...+.+..-+..+| +||+.
T Consensus 63 ~~eF~~~~~~~~~~~~g~~~~~~~~~~ 89 (96)
T smart00027 63 KDEFALAMHLIYRKLNGYPIPASLPPS 89 (96)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccCCHh
Confidence 778988888888776655555 46654
No 100
>PRK12544 RNA polymerase sigma factor; Provisional
Probab=20.55 E-value=1.6e+02 Score=21.41 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhH-Hhhhhccccccchhh
Q psy8595 65 LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLV-KYLKGTVKETFSGWV 124 (128)
Q Consensus 65 ~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~-~~~~~~~~~~~~~~~ 124 (128)
.++.++++-+..|=.|+...+. +....+ +++++-+-... +..+-.....|++|+
T Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~-----d~~~AE-DivQEvfikl~~~~~~~~~~~~~~~WL 73 (206)
T PRK12544 19 QDPVFLEDLRKQMIKFATLQLS-----DLHLAE-DAVQEALIGALKNADSFAGRAAFKTWV 73 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHhC-----CHhHHH-HHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3789999999999999999987 444433 44444333332 222222346788886
Done!