Query psy8595
Match_columns 128
No_of_seqs 149 out of 1015
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:49:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lui_A Sorting nexin-17, SNX17 100.0 4.2E-32 1.4E-36 184.3 12.1 105 1-110 4-110 (115)
2 3iq2_A Sorting nexin-7; SNX7, 100.0 1.7E-27 5.7E-32 166.4 13.2 103 1-108 9-124 (138)
3 4az9_A Sorting nexin-24; prote 99.9 4.6E-27 1.6E-31 162.5 12.0 98 1-107 23-124 (129)
4 1xte_A Serine/threonine-protei 99.9 8.6E-27 2.9E-31 165.3 10.4 101 2-108 9-114 (154)
5 2csk_A Sorting nexin 12; SNX12 99.9 2.3E-26 7.9E-31 161.6 11.6 102 1-108 11-130 (146)
6 2i4k_A Sorting nexin-1, SNX1; 99.9 7.8E-28 2.7E-32 165.0 3.3 102 1-107 4-126 (128)
7 1kmd_A VAM7P, vacuolar morphog 99.9 9.8E-27 3.3E-31 158.1 8.6 96 1-107 6-113 (117)
8 1ocs_A Sorting nexin GRD19; so 99.9 5.3E-26 1.8E-30 162.6 11.7 103 1-108 36-158 (162)
9 2v14_A Kinesin-like motor prot 99.9 1.8E-26 6.1E-31 160.4 8.6 96 1-101 6-106 (134)
10 1h6h_A Neutrophil cytosol fact 99.9 1.2E-25 4.1E-30 157.3 11.8 104 1-110 21-137 (143)
11 3p0c_A Nischarin; structural g 99.9 9E-26 3.1E-30 156.1 8.8 100 2-107 17-123 (130)
12 2ar5_A Phosphoinositide 3-kina 99.9 6.8E-25 2.3E-29 149.9 10.1 101 2-107 7-114 (121)
13 2ett_A Sorting nexin-22; PX do 99.9 4.7E-25 1.6E-29 152.3 7.6 93 3-108 21-116 (128)
14 1kq6_A NCF-1, P47PHOX, neutrop 99.9 7.2E-24 2.5E-28 148.2 11.8 107 2-114 8-127 (141)
15 2iwl_X Phosphatidylinositol-4- 99.9 5.9E-24 2E-28 148.5 6.6 103 2-109 22-131 (140)
16 3dyt_A Sorting nexin-9; 3-heli 99.9 1E-23 3.5E-28 167.2 7.9 102 1-107 21-127 (366)
17 4akv_A Sorting nexin-33; trans 99.9 1.2E-23 4.1E-28 168.0 6.5 103 1-108 42-148 (386)
18 2v6v_A BUD emergence protein 1 99.9 4.4E-22 1.5E-26 141.6 11.4 100 1-109 19-136 (156)
19 3hpc_X SNX5 protein; sprting n 99.9 7.5E-22 2.6E-26 141.0 10.7 98 2-108 13-150 (161)
20 2l73_A NADPH oxidase organizer 99.9 9.7E-22 3.3E-26 138.8 9.4 106 3-112 11-131 (149)
21 2wwe_A Phosphoinositide-3-kina 99.8 2.9E-21 1E-25 132.2 7.2 96 2-107 27-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.8 8E-19 2.8E-23 137.7 11.0 102 1-107 24-137 (341)
23 3ogl_Q JAZ1 incomplete degron 53.9 9.1 0.00031 17.6 1.8 12 72-83 5-16 (21)
24 3twe_A Alpha4H; unknown functi 44.2 17 0.0006 17.1 2.0 14 35-48 7-20 (27)
25 3ogk_Q JAZ1 incomplete degron 41.6 9.3 0.00032 17.7 0.8 7 76-82 4-10 (22)
26 1s28_A ORF1; type III chaperon 37.1 28 0.00096 23.3 2.9 23 36-61 5-27 (132)
27 3zwl_E Eukaryotic translation 35.5 20 0.00067 20.0 1.7 21 66-86 10-30 (50)
28 3llk_A Sulfhydryl oxidase 1; d 33.7 64 0.0022 24.0 4.8 48 71-125 39-88 (261)
29 2p7v_A Regulator of sigma D; R 22.7 1.2E+02 0.0042 20.8 4.3 49 67-115 20-68 (158)
30 3tso_C RAB11 family-interactin 20.4 47 0.0016 20.0 1.5 16 71-86 34-49 (75)
No 1
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.98 E-value=4.2e-32 Score=184.32 Aligned_cols=105 Identities=47% Similarity=0.862 Sum_probs=95.8
Q ss_pred CEEEeCCcEEeecCCC--CEEEEEEEECceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLE 78 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g--~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le 78 (128)
|+|+||+++...+..| +|++|.|++++.|.|.||||||.+||++|++.+|...+|+||+|++++++++++|+||.+||
T Consensus 4 l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le 83 (115)
T 3lui_A 4 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLE 83 (115)
T ss_dssp -CEEEEEEEEEC-----CCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSCCCHHHHHHHHHHHH
T ss_pred EEEEECCeEEecCCCCCCCEEEEEEEECCeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccCCCHHHHHHHHHHHH
Confidence 7899999999987544 99999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCccccChhHHHhhhhhHH
Q psy8595 79 KYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVK 110 (128)
Q Consensus 79 ~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~ 110 (128)
.||+.|++ +|.+++|+.++.||+....
T Consensus 84 ~yL~~l~~-----~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 84 KYMQAVRQ-----DPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp HHHHHHHH-----SHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHc-----ChhhhcChHHHHHHCcCHH
Confidence 99999999 6999999999999986543
No 2
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=166.36 Aligned_cols=103 Identities=17% Similarity=0.319 Sum_probs=92.7
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-----CCH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-----LSV 67 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-----~~~ 67 (128)
+.|+|.+++..+++.++|++|.|.+. ..|.|.||||||.+||+.|.+.+|...+|+||+|.+++ +++
T Consensus 9 l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~~~ 88 (138)
T 3iq2_A 9 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFND 88 (138)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGGCH
T ss_pred EEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccCCH
Confidence 57999999999876669999999983 57999999999999999999999998999999999873 389
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
++||+||.+||.||+.|++ +|.+++|+.++.||+..
T Consensus 89 ~fie~Rr~~Le~fL~~l~~-----~p~l~~s~~~~~FL~~~ 124 (138)
T 3iq2_A 89 DFIETRRKALHKFLNRIAD-----HPTLTFNEDFKIFLTAQ 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----STTGGGCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHc-----CHhhhcChHHHhhhCCC
Confidence 9999999999999999999 69999999999999864
No 3
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.95 E-value=4.6e-27 Score=162.54 Aligned_cols=98 Identities=23% Similarity=0.329 Sum_probs=89.0
Q ss_pred CEEEeCCcEEeecCCC-CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSG-KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTH 76 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g-~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~ 76 (128)
|+|+||+++...++.| +|++|.|+|. ..|.|.||||||.+||++|++.++ .|+||+|.+.++++++||+||.+
T Consensus 23 ~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~~~~---~p~lP~K~~~~~~~~~ie~Rr~~ 99 (129)
T 4az9_A 23 MEVYIPSFRYEESDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIK---TPEIPSKHVRNWVPKVLEQRRQG 99 (129)
T ss_dssp CEEEEEEEEEECCTTSCCEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHTTTSC---CCCCCCSCCSCCCHHHHHHHHHH
T ss_pred eEEEECcEEEEecCCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhCC---CCCCCcccccCCCHHHHHHHHHH
Confidence 5799999999988777 8999999983 789999999999999999999887 68999999888999999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
||.||+.|+.+ +.+. ++.+.+||+.
T Consensus 100 Le~yL~~ll~~-----~~~~-~~~l~~FL~~ 124 (129)
T 4az9_A 100 LETYLQAVILE-----NEEL-PKLFLDFLNV 124 (129)
T ss_dssp HHHHHHHHHHH-----CSSC-CHHHHHHTTC
T ss_pred HHHHHHHHHhC-----chhh-CHHHHHHCCC
Confidence 99999999995 6654 7899999975
No 4
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.94 E-value=8.6e-27 Score=165.33 Aligned_cols=101 Identities=21% Similarity=0.410 Sum_probs=92.0
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC--CCHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP--LSVIQIEERRTH 76 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~--~~~~~ie~Rr~~ 76 (128)
+|+||+++...++.++|++|.|+|. ..|.|.||||||.+||+.|++.+|...+ +||+|++++ ++++++|+||.+
T Consensus 9 ~v~I~~~~~~~~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~~~~~~~ie~Rr~~ 87 (154)
T 1xte_A 9 SVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDNFDPDFIKQRRAG 87 (154)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSCTTCHHHHHHHHHH
T ss_pred EEEECCcEEEecCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCCCCCHHHHHHHHHH
Confidence 6999999999876559999999994 6799999999999999999999997654 599999985 799999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
||.||+.|++ +|.+++|+.++.||+..
T Consensus 88 Le~yL~~l~~-----~p~l~~s~~l~~FL~~~ 114 (154)
T 1xte_A 88 LNEFIQNLVR-----YPELYNHPDVRAFLQMD 114 (154)
T ss_dssp HHHHHHHHTT-----CHHHHTSHHHHHHTTTT
T ss_pred HHHHHHHHHc-----ChhhccChHHHHHhCCC
Confidence 9999999999 69999999999999753
No 5
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=161.62 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=91.6
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCC---------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLF--------- 63 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~--------- 63 (128)
++|+|.+++.+.++.++|++|.|++. ..|.|.||||||.+||+.|++. +...+|+||+|+++
T Consensus 11 l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~~~ 89 (146)
T 2csk_A 11 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRGDE 89 (146)
T ss_dssp CEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCCCS
T ss_pred EEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccccccc
Confidence 57889999988776559999999983 4799999999999999999986 66789999999987
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 64 -PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 64 -~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
++++++||+||.+||.||+.|++ ||.+++|+.++.||+..
T Consensus 90 g~~~~~fie~Rr~~Le~fL~~l~~-----~p~l~~s~~l~~FL~~~ 130 (146)
T 2csk_A 90 GIFEESFIEERRQGLEQFINKIAG-----HPLAQNERCLHMFLQEE 130 (146)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHH-----CHHHHHCHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHc-----ChhhccCcHHHhhcCCC
Confidence 36899999999999999999999 69999999999999864
No 6
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.94 E-value=7.8e-28 Score=165.00 Aligned_cols=102 Identities=23% Similarity=0.390 Sum_probs=92.6
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHcCC--CCCCCCCCCCCCC------
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLYGP--ENVPSFPPKKLFP------ 64 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~~~--~~~P~lP~K~~~~------ 64 (128)
|+|+|++++..+++.++|++|.|++. ..|.|.||||||.+||+.|++.+|. ..+|+||+|++++
T Consensus 4 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~ 83 (128)
T 2i4k_A 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 83 (128)
T ss_dssp CCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCC
T ss_pred EEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhh
Confidence 57899999999876569999999983 5799999999999999999999974 6789999999874
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 65 -----LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 65 -----~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
++++++|+||.+||.||+.|++ +|.+++|+.++.||+.
T Consensus 84 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~-----~p~l~~s~~~~~FL~~ 126 (128)
T 2i4k_A 84 GKEDSSSAEFLEKRRAALERYLQRIVN-----HPTMLQDPDVREFLEK 126 (128)
T ss_dssp CSCCCSSTTHHHHHHHHHHHHHHHHHH-----CHHHHCSHHHHTTTTC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHc-----CcccccChHHHHhhCC
Confidence 2789999999999999999999 6999999999999975
No 7
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.94 E-value=9.8e-27 Score=158.08 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=87.0
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEECceEEEEechhhHHHHHHHHHHHcCCCCCC-CCCCCCCC--------CCCHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVP-SFPPKKLF--------PLSVIQIE 71 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~~~~~v~rRYseF~~L~~~L~~~~~~~~~P-~lP~K~~~--------~~~~~~ie 71 (128)
++|+||+++. .++|++|.|++ ..|.|.||||||.+||+.|++.+| ..+| +||+|+++ ++++++||
T Consensus 6 ~~v~I~~~~~----~~~~~~Y~I~v-~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~~~~~~~~~ie 79 (117)
T 1kmd_A 6 LRIKVDDVKI----NPKYVLYGVST-PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQRRYDDPEMID 79 (117)
T ss_dssp CCCEEEEEEE----CSSCEEEEEEC-SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTCCCTTCHHHHH
T ss_pred EEEEECCcee----cCCEEEEEEEE-ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccccCCCCHHHHH
Confidence 5789999988 35899999999 699999999999999999999999 5789 99999985 36999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCc---cccChhHHHhhhh
Q psy8595 72 ERRTHLEKYMQSCKKLWNSLHRD---IRDSQSLGAFKTS 107 (128)
Q Consensus 72 ~Rr~~Le~yL~~l~~~~~~~~~~---l~~s~~~~~FL~~ 107 (128)
+||.+||.||+.+++ +|. +++|+.+++||+.
T Consensus 80 ~Rr~~Le~yL~~l~~-----~p~l~~~~~s~~l~~FL~~ 113 (117)
T 1kmd_A 80 ERRIGLERFLNELYN-----DRFDSRWRDTKIAQDFLQL 113 (117)
T ss_dssp HHHTTHHHHHHHHHC-----CSSCCHHHHSHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh-----CcchhhhhcCHHHHHhcCC
Confidence 999999999999999 574 5899999999985
No 8
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.93 E-value=5.3e-26 Score=162.56 Aligned_cols=103 Identities=27% Similarity=0.361 Sum_probs=91.5
Q ss_pred CEEEeCCcEEe---e-cCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHHHc-----CCCCCCCCCCCCCC
Q psy8595 1 MHFSIPDTQQL---C-DDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKKLY-----GPENVPSFPPKKLF 63 (128)
Q Consensus 1 ~~v~Ip~~~~~---~-~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~~~-----~~~~~P~lP~K~~~ 63 (128)
++|+|.+++.. + ++.++|++|.|++. ..|.|.||||||.+||+.|.+.+ |...+|+||+|+++
T Consensus 36 l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~ 115 (162)
T 1ocs_A 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL 115 (162)
T ss_dssp EEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCS
T ss_pred EEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCccc
Confidence 36888888887 4 33449999999983 57999999999999999999999 88899999999997
Q ss_pred -C-CCHHHHHHHHHHHHHHHHHHHhhcccCCCcccc-ChhHHHhhhhh
Q psy8595 64 -P-LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRD-SQSLGAFKTSL 108 (128)
Q Consensus 64 -~-~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~-s~~~~~FL~~~ 108 (128)
+ +++++||+||.+||.||+.|++ ||.+++ |+.++.||+..
T Consensus 116 ~~~~~~~fie~Rr~~Le~fL~~l~~-----~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 116 SNRFSNEVIEERRQGLNTWMQSVAG-----HPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT-----CHHHHHHCHHHHHHHHCS
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHc-----CHHhhhCCHHHHHhCCCc
Confidence 3 6999999999999999999999 699998 99999999863
No 9
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=160.37 Aligned_cols=96 Identities=26% Similarity=0.376 Sum_probs=86.3
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTH 76 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~ 76 (128)
++|+||+++...+++++|++|.|++. ..|.|.||||||.+||++|++.+|...+|+||+|++++ +++++||+||.+
T Consensus 6 i~VsIp~~~~~~~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~~~~~~~ie~Rr~~ 85 (134)
T 2v14_A 6 IKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAERRSH 85 (134)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSCTTSHHHHHHHHHH
T ss_pred EEEEECcEEEEecCCCCEEEEEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccccCCCHHHHHHHHHH
Confidence 57999999999875559999999984 78999999999999999999999988899999999985 689999999999
Q ss_pred HHHHHHHHHhhcccCCCc-cccChhH
Q psy8595 77 LEKYMQSCKKLWNSLHRD-IRDSQSL 101 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~-l~~s~~~ 101 (128)
||.||+.++++ |. +.+|+.+
T Consensus 86 Le~yL~~ll~~-----~~~l~~sp~~ 106 (134)
T 2v14_A 86 LEKYLRDFFSV-----MLQSATSPLH 106 (134)
T ss_dssp HHHHHHHHHHH-----HHHCTTSTTC
T ss_pred HHHHHHHHHhC-----hHhhcCCHHH
Confidence 99999999995 54 7778753
No 10
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.93 E-value=1.2e-25 Score=157.30 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=90.8
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC--------CCCCCCCCCCCCCCCHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP--------ENVPSFPPKKLFPLSVI 68 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~--------~~~P~lP~K~~~~~~~~ 68 (128)
|+|+|++++...+ .++|++|.|+|. ..|.|.||||||.+||++|++.||. ..+|+||+|++++.+++
T Consensus 21 i~v~I~~~e~~~~-~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~~~~~~ 99 (143)
T 1h6h_A 21 ISANIADIEEKRG-FTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQE 99 (143)
T ss_dssp EEEEEEEEEEECS-SSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCSSCHHH
T ss_pred EEEEEcCccccCC-CCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcccCcCHH
Confidence 5799999976542 348999999983 5899999999999999999999994 35799999999977899
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCc-cccChhHHHhhhhhHH
Q psy8595 69 QIEERRTHLEKYMQSCKKLWNSLHRD-IRDSQSLGAFKTSLVK 110 (128)
Q Consensus 69 ~ie~Rr~~Le~yL~~l~~~~~~~~~~-l~~s~~~~~FL~~~~~ 110 (128)
++|+||.+||.||+.|+++ |. +++|+.+.+||+....
T Consensus 100 ~ie~Rr~~Le~yL~~ll~~-----p~~l~~s~~~~~Fl~~~~~ 137 (143)
T 1h6h_A 100 IAEMRIPALNAYMKSLLSL-----PVWVLMDEDVRIFFYQSPY 137 (143)
T ss_dssp HHHHHHHHHHHHHHHHTTS-----CHHHHTCHHHHHHHSCCHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----CHhhhcCHHHHHHhCCCcc
Confidence 9999999999999999994 65 9999999999986443
No 11
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.93 E-value=9e-26 Score=156.14 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=88.6
Q ss_pred EEEeCCcEEeecC--CC-CEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDD--SG-KYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~--~g-~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr 74 (128)
+|+||++.....+ .+ +|++|.|++. ..|.|.||||||.+||++|++.+|. ..|+||+|++++ ++++++|+||
T Consensus 17 ~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~g~~~~~~ie~Rr 95 (130)
T 3p0c_A 17 NLYFQSMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKIIGKNSRSLVEKRE 95 (130)
T ss_dssp CCCEECCEEEEEEEECSSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCCSCCCSCSHHHHH
T ss_pred eeEeeeeEEEEEeccccCCEEEEEEEEEECCeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccccccCCHHHHHHHH
Confidence 4788887764432 34 9999999994 6899999999999999999999985 479999999986 6899999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+||.||+.|++ +|.++.|+.++.||+.
T Consensus 96 ~~Le~yL~~l~~-----~p~l~~s~~l~~FL~~ 123 (130)
T 3p0c_A 96 KDLEVYLQKLLA-----AFPGVTPRVLAHFLHF 123 (130)
T ss_dssp HHHHHHHHHHHH-----TSCSEECHHHHHHHHS
T ss_pred HHHHHHHHHHHc-----ChhhhcCHHHHHHhCC
Confidence 999999999999 6999999999999985
No 12
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.92 E-value=6.8e-25 Score=149.93 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=89.2
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC-----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCC--CHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN-----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPL--SVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~-----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~--~~~~ie~Rr 74 (128)
+|+|++++...+++ ++++|.|+|. ..|.|.||||||.+||++|++.||...+|+||+|++++. +.+++|+||
T Consensus 7 ~v~V~~~ek~~~~~-k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e~Rr 85 (121)
T 2ar5_A 7 EVSVFTYHKKYNPD-KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKRK 85 (121)
T ss_dssp EEEEEEEECCCSSS-SCCEEEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHHHHH
T ss_pred EEEECcEEEEecCC-CcEEEEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHHHHH
Confidence 68999999887533 4444999983 379999999999999999999999988999999999863 578999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
.+||.||+.|+++ ++.+++|+.+..|++.
T Consensus 86 ~~Le~yL~~ll~~----p~~i~~s~~v~~Ff~~ 114 (121)
T 2ar5_A 86 IELNSYLQSLMNA----STDVAECDLVCTFFHG 114 (121)
T ss_dssp HHHHHHHHHHHTS----CHHHHTSHHHHHHTSS
T ss_pred HHHHHHHHHHHhC----CchhcCCHHHHHHcCC
Confidence 9999999999996 6899999999999975
No 13
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.91 E-value=4.7e-25 Score=152.26 Aligned_cols=93 Identities=26% Similarity=0.375 Sum_probs=81.0
Q ss_pred EEeCCcEEeecCCCCEEEEEEEEC---ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8595 3 FSIPDTQQLCDDSGKYTGYNLHLN---GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEK 79 (128)
Q Consensus 3 v~Ip~~~~~~~~~g~y~~Y~I~v~---~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~ 79 (128)
|+||+.+ +.++|++|.|+|. ..|.|.||||||.+||++|++.++ +|+||+|+++++++++||+||.+||.
T Consensus 21 v~Ip~~~----~~~~~~~Y~I~v~~~~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~~~~~~~ie~Rr~~Le~ 93 (128)
T 2ett_A 21 AEGPRQS----PEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLPNWRTRGLEQRRQGLEA 93 (128)
T ss_dssp CCCCSSC----SSCCCCEEEEEEEETTEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCCCSSSSCHHHHHHHHHH
T ss_pred EEecccc----CCCCEEEEEEEEEECCcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccCCCCHHHHHHHHHHHHH
Confidence 5666643 1239999999983 689999999999999999999986 79999999888899999999999999
Q ss_pred HHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 80 YMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 80 yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
||+.|+++ |.++ ++.+.+||+..
T Consensus 94 yL~~ll~~-----p~~~-s~~l~~FL~~~ 116 (128)
T 2ett_A 94 YIQGILYL-----NQEV-PKELLEFLRLR 116 (128)
T ss_dssp HHHHHHHH-----SSSS-CHHHHHHHTCT
T ss_pred HHHHHHhC-----chhc-CHHHHHhcCCc
Confidence 99999995 7666 79999999853
No 14
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.91 E-value=7.2e-24 Score=148.15 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=91.1
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCC---------CCCCCCCCCCCCCCHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPE---------NVPSFPPKKLFPLSVI 68 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~---------~~P~lP~K~~~~~~~~ 68 (128)
+|+|++++...++ ++|++|.|+|. ..|.|.||||||.+||.+|++.||.. .+|+||+|.+++ +.+
T Consensus 8 ~v~V~~~ek~~~~-~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~~-~~~ 85 (141)
T 1kq6_A 8 HIALLGFEKRFVP-SQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFD-GQR 85 (141)
T ss_dssp EEEEEEEEEECSS-SCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCC-SHH
T ss_pred EEEEccEEEecCC-CCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccccC-CHH
Confidence 6889999887642 36778999984 57999999999999999999999964 689999999986 489
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhhh
Q psy8595 69 QIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKG 114 (128)
Q Consensus 69 ~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~~ 114 (128)
++|+||.+||.||+.|+++ ++.+++|+.+.+||+......+.
T Consensus 86 ~~e~Rr~~Le~YL~~Ll~~----p~~i~~s~~v~~Fl~~~~~d~~~ 127 (141)
T 1kq6_A 86 AAENRQGTLTEYCSTLMSL----PTKISRCPHLLDFFKVRPDDLKL 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTS----CHHHHTCHHHHHHHSCCHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhC----CHhhcCChHHHHHhCCCccccCC
Confidence 9999999999999999995 35699999999999865544433
No 15
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.89 E-value=5.9e-24 Score=148.51 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=84.3
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC-----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCC--CHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN-----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPL--SVIQIEERR 74 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~-----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~--~~~~ie~Rr 74 (128)
+|+|++++...++ ++|++|.|+|. ..|.|.||||||.+||++|++.||...+|+||+|++++. +.+++|+||
T Consensus 22 ~v~I~~~ek~~~~-~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~~~~~~~~~e~Rr 100 (140)
T 2iwl_X 22 EVSVFTYHKKYNP-DKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKRK 100 (140)
T ss_dssp EEEEEEEEECCSS-SSCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC----------CCCCHHH
T ss_pred EEEECcEEEEecC-CCeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecCccchHHHHHHHH
Confidence 6889999987642 46667999983 379999999999999999999999888999999999852 567999999
Q ss_pred HHHHHHHHHHHhhcccCCCccccChhHHHhhhhhH
Q psy8595 75 THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLV 109 (128)
Q Consensus 75 ~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~ 109 (128)
.+||.||+.|+++ ++.+++|+.+.+||....
T Consensus 101 ~~Le~yL~~Ll~~----~~~i~~s~~v~~Fl~~~~ 131 (140)
T 2iwl_X 101 IELNSYLQSLMNA----STDVAECDLVCTFFHPLL 131 (140)
T ss_dssp HHHHHHHHHHTTS----CHHHHTSHHHHHHHSCCT
T ss_pred HHHHHHHHHHHhC----CHhhhcCHHHHHHhCCCC
Confidence 9999999999996 689999999999998643
No 16
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.89 E-value=1e-23 Score=167.20 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=83.9
Q ss_pred CEEEeCCcEEeecCCC--CEEEEEEEEC-ceEEEEechhhHHHHHHHHHHHcCC-CCCCCCCCCCCCC-CCHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSG--KYTGYNLHLN-GEYHCSVRYKQLHNFNEQLKKLYGP-ENVPSFPPKKLFP-LSVIQIEERRT 75 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g--~y~~Y~I~v~-~~~~v~rRYseF~~L~~~L~~~~~~-~~~P~lP~K~~~~-~~~~~ie~Rr~ 75 (128)
+.|+|.+++..++..| +|++|.|++. ..|.|.||||||.+||+.|...+|. ..+|+||+|.+++ +++++||+||.
T Consensus 21 ~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g~~~~~fie~Rr~ 100 (366)
T 3dyt_A 21 FDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRME 100 (366)
T ss_dssp CCEEEECGGGSSSCCCCCSSCEEEEEETTCSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-----------CHHHHHH
T ss_pred eEEEEcCceeecCCCCCcCeEEEEEEEecCcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcccCCCCHHHHHHHHH
Confidence 3578888888763334 9999999997 6899999999999999999999999 8899999999986 69999999999
Q ss_pred HHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 76 HLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 76 ~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+||.||+.|++ ||.+++|+.++.||+.
T Consensus 101 ~Le~fL~~i~~-----~p~l~~~~~~~~FL~~ 127 (366)
T 3dyt_A 101 RLQAWMTRMCR-----HPVISESEVFQQFLNF 127 (366)
T ss_dssp HHHHHHHHHHT-----CTTGGGSHHHHHHHHC
T ss_pred HHHHHHHHHhC-----CHhhhCCcHHHHhhCC
Confidence 99999999999 6999999999999985
No 17
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=168.02 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=82.7
Q ss_pred CEEEeCCcEEeecCCC--CEEEEEEEEC-ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCHHHHHHHHHH
Q psy8595 1 MHFSIPDTQQLCDDSG--KYTGYNLHLN-GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVIQIEERRTH 76 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g--~y~~Y~I~v~-~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~-~~~~~ie~Rr~~ 76 (128)
+.|+|.+++...+..| +|++|.|++. ..|.|.||||||.+||+.|.+.+|...+|+||+|.+++ +++++||+||.+
T Consensus 42 ~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~g~~~~~fie~Rr~~ 121 (386)
T 4akv_A 42 FACSVEDPTKQTKFKGIKSYISYKLTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATGRFEEDFIEKRKRR 121 (386)
T ss_dssp CCEEEECC------------CCEEEEETTSSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC------CCTTTHHHHH
T ss_pred eEEEEcCceEecCCCCCcCeEEEEEEEEeCCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCcccCCCCHHHHHHHHHH
Confidence 3578888888874334 9999999996 68999999999999999999999999999999999986 699999999999
Q ss_pred HHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 77 LEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 77 Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
||.||+.|++ ||.+++|+.++.||+..
T Consensus 122 Le~fL~~i~~-----~p~l~~s~~~~~FL~~~ 148 (386)
T 4akv_A 122 LILWMDHMTS-----HPVLSQYEGFQHFLSCL 148 (386)
T ss_dssp HHHHHHHHHT-----CTTGGGCHHHHHHHSCC
T ss_pred HHHHHHHHhC-----CHhhhCCcHHHHHhCCC
Confidence 9999999999 79999999999999853
No 18
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.88 E-value=4.4e-22 Score=141.56 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=86.3
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC--------------CCCCCCCCCCC
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP--------------ENVPSFPPKKL 62 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~--------------~~~P~lP~K~~ 62 (128)
++++||++.... ++++|.|.|. ..|.|.||||||.+||.+|+..||. ..+|.||+|.+
T Consensus 19 ~~~sI~~~~~~~----~~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~~ 94 (156)
T 2v6v_A 19 VKASVESFGLED----EKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVP 94 (156)
T ss_dssp EEEEEEEEEEET----TEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCCS
T ss_pred eEEEEeeEEEEC----CEEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCcc
Confidence 368999988763 3556999984 5899999999999999999999975 34799999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhH
Q psy8595 63 FPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLV 109 (128)
Q Consensus 63 ~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~ 109 (128)
+ .+++++|+|+.+|+.||+.|+++ ++.++.|+.+..||....
T Consensus 95 ~-~~~~~~e~Rr~~Le~YL~~Ll~l----p~~i~~s~~v~~Ff~~~~ 136 (156)
T 2v6v_A 95 Y-VTNSITKKRKEDLNIYVADLVNL----PDYISRSEMVHSLFVVLN 136 (156)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHHHTS----CHHHHTSHHHHHTTSCCS
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHhC----CccccCCHHHHHHhCCCC
Confidence 7 46899999999999999999996 567999999999998643
No 19
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.87 E-value=7.5e-22 Score=141.00 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=84.4
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC--------ceEEEEechhhHHHHHHHHHH--HcCCCCCCCCCCCCCCC-------
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN--------GEYHCSVRYKQLHNFNEQLKK--LYGPENVPSFPPKKLFP------- 64 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~--------~~~~v~rRYseF~~L~~~L~~--~~~~~~~P~lP~K~~~~------- 64 (128)
.|+|.+....+ .|+.|.|.+. ..|.|.||||||.+||+.|.+ .+|...+|++|+|.+++
T Consensus 13 ~i~V~dp~~~~----~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K~~ 88 (161)
T 3hpc_X 13 QIDIPDALSER----DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQ 88 (161)
T ss_dssp EEEEEEEEEET----TEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHHHH
T ss_pred EEEECCCeEec----CCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhhhh
Confidence 57777777664 4999999983 589999999999999999998 89999999999999872
Q ss_pred --------C------------CHHHHHHHH---HHHHHHHHHHHhhcccCCCccccChhHHHhhhhh
Q psy8595 65 --------L------------SVIQIEERR---THLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSL 108 (128)
Q Consensus 65 --------~------------~~~~ie~Rr---~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~ 108 (128)
+ +++|||+|| .+||.||+.|++ ||.+++|+.++.||+..
T Consensus 89 ~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~-----HP~L~~d~~~~~FL~~~ 150 (161)
T 3hpc_X 89 KLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSS-----HPVLSKDRNFHVFLEYD 150 (161)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----STTGGGCHHHHHHHHCC
T ss_pred cccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHc-----CCCcccCcHHHhhcCCC
Confidence 2 357899754 459999999999 69999999999999864
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=138.84 Aligned_cols=106 Identities=10% Similarity=0.143 Sum_probs=88.6
Q ss_pred EEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCC---------CCCCCCCCCCCCC--CCH
Q psy8595 3 FSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGP---------ENVPSFPPKKLFP--LSV 67 (128)
Q Consensus 3 v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~---------~~~P~lP~K~~~~--~~~ 67 (128)
|.|-+++....+++.|++|.|+|. ..|.|+||||||.+||.+|++.||. ..+|.||+|.+++ .+.
T Consensus 11 v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~~~ 90 (149)
T 2l73_A 11 YPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRT 90 (149)
T ss_dssp CEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCCHH
T ss_pred EEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeeccccch
Confidence 455556665555558999999994 6799999999999999999999984 3489999999985 368
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhh
Q psy8595 68 IQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYL 112 (128)
Q Consensus 68 ~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~ 112 (128)
+++++|+.+|+.||+.++++ ++.+++|+.+.+||.......
T Consensus 91 ~~~e~R~~~Le~YL~~Ll~l----p~~i~~s~~v~~Ff~~~~~D~ 131 (149)
T 2l73_A 91 SRGLARLQLLETYSRRLLAT----AERVARSPTITGFFAPQPLDL 131 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CHHHHHSHHHHHHHSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhC----CccccCCHHHHHHhCCCcccc
Confidence 89999999999999999997 467999999999998654433
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=132.18 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=82.5
Q ss_pred EEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy8595 2 HFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHL 77 (128)
Q Consensus 2 ~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~L 77 (128)
+++|.+++.. +...|.|.|. +.|.|.|||+||.+||++|++.||...+|+||+|++++++..-++ ||.+|
T Consensus 27 ~~~v~~~~k~-----~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~~t~~~~e-Rr~~L 100 (127)
T 2wwe_A 27 RATILGFSKK-----SSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPFTNSDHR-RFRDL 100 (127)
T ss_dssp EEEEEEEETT-----EEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHHHHHCHHH-HHHHH
T ss_pred EEEEEEEEec-----ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccCcCHHHHH-HHHHH
Confidence 4566666444 3455999983 789999999999999999999999988999999998876666666 99999
Q ss_pred HHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 78 EKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 78 e~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
+.||+.|++. +++|++|+.+.+|+..
T Consensus 101 e~Ylq~Ll~~----~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 101 NHYMEQILNV----SHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHHHHHHTTS----CHHHHTSHHHHHHHHC
T ss_pred HHHHHHHhcC----CceeecCHHHHHHhCC
Confidence 9999999996 7999999999999964
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=137.75 Aligned_cols=102 Identities=21% Similarity=0.319 Sum_probs=89.3
Q ss_pred CEEEeCCcEEeecCCCCEEEEEEEEC----ceEEEEechhhHHHHHHHHHHHcCCC--------CCCCCCCCCCCCCCHH
Q psy8595 1 MHFSIPDTQQLCDDSGKYTGYNLHLN----GEYHCSVRYKQLHNFNEQLKKLYGPE--------NVPSFPPKKLFPLSVI 68 (128)
Q Consensus 1 ~~v~Ip~~~~~~~~~g~y~~Y~I~v~----~~~~v~rRYseF~~L~~~L~~~~~~~--------~~P~lP~K~~~~~~~~ 68 (128)
++|+|++++...+. ++|++|.|+|. ..|.|.|||+||.+||.+|...||.. .+|.||+|.+++.+.+
T Consensus 24 ~~v~I~~~~~~~~~-~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~~~~~~ 102 (341)
T 2dyb_A 24 ISANIADIEEKRGF-TSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVGVKQE 102 (341)
T ss_dssp EEEEEEEEEEEESS-SEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCCSCHHH
T ss_pred EEEEECCeEEecCC-CcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccccCccHH
Confidence 36899999888543 47999999984 67999999999999999999999953 4899999999977888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhh
Q psy8595 69 QIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107 (128)
Q Consensus 69 ~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~ 107 (128)
++++|+..|+.||+.++++ ++.++.|+.+..|+..
T Consensus 103 ~~e~R~~~Le~yl~~ll~l----p~~i~~~~~v~~Ff~~ 137 (341)
T 2dyb_A 103 IAEMRIPALNAYMKSLLSL----PVWVLMDEDVRIFFYQ 137 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHS----CHHHHTCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhc----CchhhhhHHHHHHHhh
Confidence 9999999999999999996 3559999999999964
No 23
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=53.90 E-value=9.1 Score=17.56 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy8595 72 ERRTHLEKYMQS 83 (128)
Q Consensus 72 ~Rr~~Le~yL~~ 83 (128)
.|+..|+.||+.
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 577788888764
No 24
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.21 E-value=17 Score=17.12 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHH
Q psy8595 35 YKQLHNFNEQLKKL 48 (128)
Q Consensus 35 YseF~~L~~~L~~~ 48 (128)
|.|+..|+++|++.
T Consensus 7 ykeledlqerlrkl 20 (27)
T 3twe_A 7 YKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888877764
No 25
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=41.64 E-value=9.3 Score=17.74 Aligned_cols=7 Identities=14% Similarity=0.785 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy8595 76 HLEKYMQ 82 (128)
Q Consensus 76 ~Le~yL~ 82 (128)
.|+.||+
T Consensus 4 SLqRFle 10 (22)
T 3ogk_Q 4 SLHRFLE 10 (26)
T ss_pred hHHHHHH
Confidence 3444443
No 26
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=37.09 E-value=28 Score=23.28 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCCCCC
Q psy8595 36 KQLHNFNEQLKKLYGPENVPSFPPKK 61 (128)
Q Consensus 36 seF~~L~~~L~~~~~~~~~P~lP~K~ 61 (128)
+.|..|-..|.+.|+ .|++|.|+
T Consensus 5 n~fd~lid~laK~Y~---mP~~P~kk 27 (132)
T 1s28_A 5 NSFDRLIDGLAKDYG---MPGFPEKK 27 (132)
T ss_dssp HHHHHHHHHHHHHHC---CCBCCCCC
T ss_pred hhHHHHHHHHHHhcC---CCCCCccc
Confidence 468999999999998 79999994
No 27
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=35.53 E-value=20 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q psy8595 66 SVIQIEERRTHLEKYMQSCKK 86 (128)
Q Consensus 66 ~~~~ie~Rr~~Le~yL~~l~~ 86 (128)
+.+.|+.||..|+.|..--..
T Consensus 10 ~~evIe~RRrlLeEW~awRa~ 30 (50)
T 3zwl_E 10 MRDLILHQRELLKQWTEYREK 30 (50)
T ss_dssp -CCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999876554
No 28
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=33.68 E-value=64 Score=23.97 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhhhc--cccccchhhh
Q psy8595 71 EERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKGT--VKETFSGWVE 125 (128)
Q Consensus 71 e~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~~~--~~~~~~~~~~ 125 (128)
.+|-.+|.+|++-+.++ .| ..+.++.||.....+++.. .+-+|+.|.+
T Consensus 39 g~~l~AL~~fl~vl~~~----~P---~~~~~~~~l~~l~~~l~~~~~~~i~~~~~~~ 88 (261)
T 3llk_A 39 GQRLVALKKFVAVLAKY----FP---GRPLVQNFLHSVNEWLKRQKRNKIPYSFFKT 88 (261)
T ss_dssp HHHHHHHHHHHHHHHHH----CC---CCHHHHHHHHHHHHHHHHCCSSEEEHHHHHH
T ss_pred CchhHHHHHHHHHHHHH----CC---CcHHHHHHHHHHHHHHHhCcccCCCHHHHHH
Confidence 46677999999999997 56 3467889998887777654 3345554443
No 29
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli}
Probab=22.67 E-value=1.2e+02 Score=20.79 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCccccChhHHHhhhhhHHhhhhc
Q psy8595 67 VIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTSLVKYLKGT 115 (128)
Q Consensus 67 ~~~ie~Rr~~Le~yL~~l~~~~~~~~~~l~~s~~~~~FL~~~~~~~~~~ 115 (128)
..++++||..|-.|.+-+---|......+.+...+..|=+...+|+.+.
T Consensus 20 D~WL~~Rq~Llv~Yc~L~gl~P~~~~~~~p~~~~l~~FCq~LVDYvS~G 68 (158)
T 2p7v_A 20 DRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAG 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCC-------CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHHHHHhhh
Confidence 6789999999999988553211100122335577888888877776644
No 30
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=20.38 E-value=47 Score=20.04 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8595 71 EERRTHLEKYMQSCKK 86 (128)
Q Consensus 71 e~Rr~~Le~yL~~l~~ 86 (128)
+.|-+.||+|+..++.
T Consensus 34 ~~~v~eLEdYID~LLv 49 (75)
T 3tso_C 34 DTHIRELEDYIDNLLV 49 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577889999998876
Done!