RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8595
(128 letters)
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 105 bits (263), Expect = 1e-30
Identities = 49/106 (46%), Positives = 66/106 (62%), Gaps = 7/106 (6%)
Query: 1 MHFSIPDTQQLCDDSG--KYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
MHFSIP+T+ DSG Y YN+H+NG HC VRY QL +EQL+K YG +P+FP
Sbjct: 4 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP 63
Query: 59 PKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
PKKLF L+ ++E+RR LEKYMQ+ + S++ +F
Sbjct: 64 PKKLFSLTPAEVEQRREQLEKYMQAV-----RQDPLLGSSETFNSF 104
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 73.3 bits (180), Expect = 4e-18
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 2 HFSIPDTQQLCDDSGKYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP 58
SIP + + + + + + RY + ++ LK Y FP
Sbjct: 7 KISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFP 66
Query: 59 PKKLF-PLSVIQIEERRTHLEKYMQS 83
PKKLF I ERR+HLEKY++
Sbjct: 67 PKKLFGNKDERVIAERRSHLEKYLRD 92
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 68.7 bits (168), Expect = 3e-16
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 4 SIPDTQQLCDD-----SGKYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENVP 55
IP + + + + + + RY + H ++++KKLY VP
Sbjct: 13 HIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLY---KVP 69
Query: 56 SFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRD 97
FP K+L +E+RR LE Y+Q L + +++ +
Sbjct: 70 DFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLE 111
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 63.0 bits (153), Expect = 4e-14
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 13 DDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ--- 69
+ KY Y + RY + +L++ G FP K Q
Sbjct: 14 KINPKYVLYGVSTP-NKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRY 72
Query: 70 -----IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
I+ERR LE+++ + RD++ F
Sbjct: 73 DDPEMIDERRIGLERFLNEL--YNDRFDSRWRDTKIAQDF 110
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 58.0 bits (140), Expect = 5e-12
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPK 60
SIP + + + ++T Y + + E+ RY + LKK + P P K
Sbjct: 11 SIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQF-PAMALKIPAK 69
Query: 61 KLFP--LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
++F I++RR L +++Q+ + ++ + + AF
Sbjct: 70 RIFGDNFDPDFIKQRRAGLNEFIQNL-----VRYPELYNHPDVRAF 110
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 52.9 bits (127), Expect = 3e-10
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 13 DDSGKYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP-LSVI 68
+ YT Y + + + E+ RY H+ +E+L + PPKK+ S
Sbjct: 31 ELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAER-KIDKNLLPPKKIIGKNSRS 89
Query: 69 QIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
+E+R LE Y+Q + L F
Sbjct: 90 LVEKREKDLEVYLQKL-----LAAFPGVTPRVLAHF 120
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 52.6 bits (126), Expect = 4e-10
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 26 NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQS 83
N ++Q + QL+K + +P FP P + R L YM+
Sbjct: 50 NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPFTNSD-HRRFRDLNHYMEQ 106
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 51.9 bits (124), Expect = 9e-10
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL----NGEYHCSVRYKQLHNFNEQLKKLYGPE------- 52
+I D ++ + + + + +Y RY+Q H +L++ +GP+
Sbjct: 24 NIADIEE-KRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALA 82
Query: 53 -NVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
+P+ P K + E R L YM+S SL + + + F
Sbjct: 83 CTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLL----SLPVWVLMDEDVRIF 131
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 51.5 bits (123), Expect = 1e-09
Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 2 HFSIPDTQQLCDDSGKYTGYNLHL---NGEYHCSV--RYKQLHNFNEQLKKLYGPENVPS 56
S+ + + K+ Y + + V + + + +L ++ +P
Sbjct: 22 EVSVFTYHKKYNPD-KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPG 80
Query: 57 FPPKKLFPLSVIQ--IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
FP + + + I+ +R+ L Y+QS + D+ + + F
Sbjct: 81 FPNRMVLGRTHIKDVAAKRKIELNSYLQSL----MNASTDVAECDLVCTF 126
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 49.5 bits (118), Expect = 7e-09
Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 2 HFSIPDTQQLCDDSGKYTGYNLHL---NGEYHCSV--RYKQLHNFNEQLKKLYGPENVPS 56
S+ + + K+ Y + + V + + + +L ++ +P
Sbjct: 7 EVSVFTYHKKYNPD-KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPG 65
Query: 57 FPPKKLFPLSVIQ--IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
FP + + + I+ +R+ L Y+QS + D+ + + F
Sbjct: 66 FPNRMVLGRTHIKDVAAKRKIELNSYLQSLM----NASTDVAECDLVCTF 111
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 41.6 bits (97), Expect = 7e-06
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 11/78 (14%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPEN---------VPSFPPKKLFPLSVIQ--IEERRTH 76
+ + + + LK+ + E +P L R
Sbjct: 40 DTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVGRTSRGLARLQL 99
Query: 77 LEKYMQSCKKLWNSLHRD 94
LE Y + + R
Sbjct: 100 LETYSRRLLATAERVARS 117
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 41.3 bits (97), Expect = 9e-06
Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL--------NGEYHCSVRYKQLHNFNEQLKKLYGPENVP 55
++ + + + Y + + E+ RY+ +L++ + +P
Sbjct: 12 TVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIP 71
Query: 56 SFPPKKLFPLSVIQ-----IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
P K + V + IE RR L K++ + H + ++ F
Sbjct: 72 PLPEKFIVKGMVERFNDDFIETRRKALHKFLNRI-----ADHPTLTFNEDFKIF 120
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 41.2 bits (96), Expect = 1e-05
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 2 HFSIPDTQQLCDDSGKYTGYNLHL----NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSF 57
H ++ ++ S Y Y + E R+ +++ F++ LK+++ E
Sbjct: 8 HIALLGFEKRFVPSQHYV-YMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAIN 66
Query: 58 PPKKLFP--------LSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
P ++ P E R+ L +Y + SL I L F
Sbjct: 67 PENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLM----SLPTKISRCPHLLDF 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 2e-04
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 21/43 (48%)
Query: 36 KQLHNFNEQLKKL------YGPENVPSFPPKKLFPLSV-IQIE 71
KQ LKKL Y ++ P+ L++ +E
Sbjct: 19 KQ------ALKKLQASLKLYADDSAPA--------LAIKATME 47
Score = 33.8 bits (76), Expect = 0.005
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 78 EKYMQSCKKLWNSLHRDIRDSQ-SLGAFKTSL 108
EK Q+ KKL SL DS +L A K ++
Sbjct: 18 EK--QALKKLQASLKLYADDSAPAL-AIKATM 46
Score = 26.8 bits (58), Expect = 1.8
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 97 DSQSLGAFKTSLVKY---------LKGTVK 117
+ Q+L + SL Y +K T++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 37.1 bits (86), Expect = 3e-04
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 1 MHFSIPDTQQLCDDSGKYTGY------NLHLNGEYHCSV--RYKQLHNFNEQLKKLYGPE 52
+ I + Q + ++T Y NL + V RY +L++
Sbjct: 11 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSK-I 69
Query: 53 NVPSFPPKKLFPLSVIQ----------IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLG 102
VP P K L + IEERR LE+++ + H ++ + L
Sbjct: 70 VVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKI-----AGHPLAQNERCLH 124
Query: 103 AFKTS 107
F
Sbjct: 125 MFLQE 129
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 34.9 bits (80), Expect = 0.002
Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 15 SGKYTGYNLHL--------NGEYHCSVRYKQLHNFNEQLKK-----LYGPENVPSFPPKK 61
G +T Y + RY F + L K + VP P K
Sbjct: 54 KGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKI 113
Query: 62 LF--PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIR-DSQSLGAFKTS 107
L S IEERR L +MQS + H ++ S+ L F +
Sbjct: 114 LLSNRFSNEVIEERRQGLNTWMQSV-----AGHPLLQSGSKVLVRFIEA 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.003
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 36 KQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLH--R 93
+ L Q+ + + S K ++I + L + ++S K N L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELRRLLKS-KPYENCLLVLL 251
Query: 94 DIRDSQSLGAF----KTSLV 109
+++++++ AF K L+
Sbjct: 252 NVQNAKAWNAFNLSCKI-LL 270
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 34.1 bits (78), Expect = 0.004
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 26/125 (20%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL--------NGEYHCSVRYKQLHNFNEQLKKLYGPEN-- 53
I D +++ D Y Y + + ++ R+ E+L + +
Sbjct: 7 GITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFI 66
Query: 54 VPSFPPKKLFPLSVIQ-----------IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLG 102
VP P K L ++ ++ +E+RR LE+Y+Q H + +
Sbjct: 67 VPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRI-----VNHPTMLQDPDVR 121
Query: 103 AFKTS 107
F
Sbjct: 122 EFLEK 126
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 34.4 bits (78), Expect = 0.006
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL-NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKL 62
P Q Y Y L + RYK +L + +VP P K+
Sbjct: 47 EDPTKQTKFKGIKSYISYKLTPTHAASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQA 106
Query: 63 F-PLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107
IE+R+ L +M + H + + F +
Sbjct: 107 TGRFEEDFIEKRKRRLILWMDHM-----TSHPVLSQYEGFQHFLSC 147
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 33.8 bits (76), Expect = 0.008
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 28 EYHCSVRYKQLHNFNEQLKKLYGPEN--------VPSFPPKKLFPLSVIQIEERRTHLEK 79
+Y RY+Q H +L++ +GP++ +P+ P K + E R L
Sbjct: 54 KYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYVGVKQEIAEMRIPALNA 113
Query: 80 YMQSCKKL 87
YM+S L
Sbjct: 114 YMKSLLSL 121
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 33.2 bits (75), Expect = 0.017
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 15 SGKYTGYNLHL-NGEYHCSVRYKQLHNFNEQLKKLYGPE-NVPSFPPKKLF-PLSVIQIE 71
Y Y L N + RYK E+L +G +PS P K++ I+
Sbjct: 37 LKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIK 96
Query: 72 ERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAFKTS 107
R L+ +M H I +S+ F
Sbjct: 97 MRMERLQAWMTRM-----CRHPVISESEVFQQFLNF 127
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
3-kinase, PX domain, SH3 domain, cytoskeleton, cell
polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Length = 156
Score = 30.8 bits (69), Expect = 0.060
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 34 RYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVI-------------QIEERRTHLEKY 80
Y+ ++ QL + E + ++ ++R+ L Y
Sbjct: 52 YYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKRKEDLNIY 111
Query: 81 MQS 83
+
Sbjct: 112 VAD 114
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP:
g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C
1kla_A 1klc_A 1kld_A 3kfd_A
Length = 112
Score = 27.6 bits (61), Expect = 0.71
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 18 YTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFP---PKKLFPLSVIQIEERR 74
Y Y S + H+ L PE S P + L PL+++ +
Sbjct: 39 YNANFCAGACPYLWSSDTQ--HSRVLSLYNTINPEASAS-PCCVSQDLEPLTILYYIGKT 95
Query: 75 THLEKY 80
+E+
Sbjct: 96 PKIEQL 101
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 27.0 bits (59), Expect = 2.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 72 ERRTHLEKYMQSCKKLWNSLHRDIR 96
E T LE Q+ LW+ LH D++
Sbjct: 259 EAVTRLEAQHQALVTLWHQLHVDMK 283
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
enalaprilat, zinc dependant peptidase, anti-hypertensive
drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Length = 589
Score = 25.9 bits (56), Expect = 5.0
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 35 YKQLHNF-NEQLKKLYGPENVPSFPP 59
Y LH + L + YG +++ P
Sbjct: 208 YLNLHAYVRRALHRHYGAQHINLEGP 233
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix
bundle, protein binding; NMR {Sus scrofa} SCOP:
a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Length = 99
Score = 25.0 bits (54), Expect = 5.7
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 42 NEQLKKLYGPENVPSFPPKKLFPLSVIQIEE-RRTHLEKYMQSCKK 86
+ +L++LY + L ++ EE R ++ ++SC
Sbjct: 36 DGRLEELYRGREADMPDEVNIDELLELESEEERSRKIQGLLKSCTN 81
>3pv9_D Putative uncharacterized protein PH1245; crispr, crispr-associated
CAS1, metallonuclease, DNAse, PROK system, immune
system, nuclease; 2.85A {Pyrococcus horikoshii}
Length = 322
Score = 25.5 bits (56), Expect = 6.3
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 11 LCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLY 49
+ G Y G + +Q ++ + K+L+
Sbjct: 65 FFNHYGYYDGTFYPRETLLSGDLIIRQAEHYLNKEKRLF 103
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system,
structural genomics, protein structure initiative; 2.70A
{Thermotoga maritima}
Length = 319
Score = 25.1 bits (55), Expect = 8.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 11 LCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLY 49
+ G Y G + KQ ++ Q K++
Sbjct: 63 FFNREGYYVGTFYPREYLNSGFLILKQAEHYINQEKRML 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.418
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,971,428
Number of extensions: 102755
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 36
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)