RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8595
(128 letters)
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 117
Score = 51.9 bits (124), Expect = 2e-10
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 2 HFSIPDTQQLCDDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKK 61
+ D + + KY Y + RY + +L++ G FP K
Sbjct: 7 RIKVDDVKI----NPKYVLYGVSTP-NKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKP 61
Query: 62 LFPLSVIQ--------IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
Q I+ERR LE+++ + RD++ F
Sbjct: 62 GVLDRRWQRRYDDPEMIDERRIGLERFLNEL--YNDRFDSRWRDTKIAQDF 110
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 50.8 bits (121), Expect = 6e-10
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL---NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPK 60
SIP + + + ++T Y + + E+ RY + LKK + + +
Sbjct: 8 SIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKR 67
Query: 61 KLFPLSVIQ-IEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
I++RR L +++Q+ + ++ + + AF
Sbjct: 68 IFGDNFDPDFIKQRRAGLNEFIQNL-----VRYPELYNHPDVRAF 107
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 143
Score = 49.3 bits (117), Expect = 3e-09
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 4 SIPDTQQLCDDSGKYTGYNLHL----NGEYHCSVRYKQLHNFNEQLKKLYGPE------- 52
+I D ++ + + + + +Y RY+Q H +L++ +GP+
Sbjct: 24 NIADIEE-KRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALA 82
Query: 53 -NVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCKKLWNSLHRDIRDSQSLGAF 104
+P+ P K + E R L YM+S SL + + + F
Sbjct: 83 CTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLL----SLPVWVLMDEDVRIF 131
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 37.4 bits (86), Expect = 1e-04
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 34 RYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQ--------IEERRTHLEKYMQSCK 85
R+ +++ F++ LK+++ E P ++ P E R+ L +Y +
Sbjct: 42 RFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLM 101
Query: 86 KLWNSLHRDIRDSQSLGAF 104
SL I L F
Sbjct: 102 ----SLPTKISRCPHLLDF 116
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 132
Score = 33.5 bits (76), Expect = 0.002
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 13 DDSGKYTGYNLHL--------NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFP 64
D G +T Y + RY F + L K N P L
Sbjct: 23 DSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPG 82
Query: 65 LSVIQ-------IEERRTHLEKYMQSC 84
++ IEERR L +MQS
Sbjct: 83 KILLSNRFSNEVIEERRQGLNTWMQSV 109
>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 112
Score = 25.3 bits (55), Expect = 1.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 39 HNFNEQLKKLYGPENVPSF--PPKKLFPLSVIQIEERRTHLEKY 80
H+ L PE S + L PL+++ + +E+
Sbjct: 58 HSRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGKTPKIEQL 101
>d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella
pneumoniae [TaxId: 573]}
Length = 131
Score = 25.3 bits (55), Expect = 1.7
Identities = 6/31 (19%), Positives = 7/31 (22%), Gaps = 1/31 (3%)
Query: 2 HFSIPDTQQLCDDSGKYTGYNLHLNGEYHCS 32
H Y NL+L C
Sbjct: 26 HLVDIAGITSSTP-ADYATKNLYLWNNETCD 55
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 322
Score = 25.2 bits (55), Expect = 2.4
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 32 SVRYKQLHNFNEQLKKLYGPENVPSFPPKKL-FPLSVIQIEERRTHLEKYMQSCKKLWNS 90
Y E + + PEN+ K+L + I E + K +
Sbjct: 35 KEGYSIYRLAYENVGIVIDPENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRL 94
Query: 91 LHR 93
L
Sbjct: 95 LKE 97
>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 187
Score = 24.4 bits (53), Expect = 4.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 23 LHLNGEYHCSVRYKQLHNFNEQLKKLYG 50
L LN + + Q F+ +L+K++
Sbjct: 70 LELNEGFKAIMYKNQFETFDSKLRKIFN 97
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa
protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 99
Score = 23.9 bits (52), Expect = 5.0
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 42 NEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTH-LEKYMQSCKK 86
+ +L++LY + L ++ EE R+ ++ ++SC
Sbjct: 36 DGRLEELYRGREADMPDEVNIDELLELESEEERSRKIQGLLKSCTN 81
>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 23.7 bits (51), Expect = 5.5
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 13 DDSGKYTGYNLHLNGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIE 71
SG+ L H + + + +V + P + V+Q E
Sbjct: 46 APSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSP----VSIMVVQSE 100
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 24.1 bits (52), Expect = 6.5
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 26 NGEYHCSVRYKQLHNFNEQLKKLYGPENVPSFPPKKLFPLSVIQIEERRTHLEKYMQSCK 85
G+Y Q+ + K + P +V + +PL + I E + E Y +
Sbjct: 252 RGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVE 311
Query: 86 KL 87
+
Sbjct: 312 QA 313
>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens)
[TaxId: 6456]}
Length = 122
Score = 23.6 bits (51), Expect = 7.0
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 75 THLEKYMQSCKKLWNSLHR--DIRDSQSLGA 103
TH + YM K+ +L R + D LGA
Sbjct: 50 THWQNYMLWVKRKIKALGRPAAVGDYTRLGA 80
>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 215
Score = 23.6 bits (51), Expect = 8.3
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 87 LWNSLHRDIRDSQSLGAFKTSLVKYLKGTVKETFSGWVEELL 128
W S I FK SL++YL + + + +
Sbjct: 138 CWCSPLLKIGKEGLPVPFKRSLIEYLNSYHLKDIDELITKSV 179
>d2lisa_ a.19.1.1 (A:) Lysin {Red abalone (Haliotis rufescens)
[TaxId: 6454]}
Length = 131
Score = 23.2 bits (50), Expect = 9.1
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 75 THLEKYMQSCKKLWNSLHR--DIRDSQSLGA 103
TH YM K ++L R + D LGA
Sbjct: 57 THWANYMLWINKKIDALGRTPVVGDYTRLGA 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.418
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,459
Number of extensions: 22386
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 20
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)