Query psy8596
Match_columns 237
No_of_seqs 77 out of 79
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:50:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 99.5 2.2E-11 4.7E-16 125.4 32.8 119 6-124 175-295 (1179)
2 COG1196 Smc Chromosome segrega 99.4 1.1E-09 2.3E-14 115.6 32.7 154 7-160 183-341 (1163)
3 TIGR02169 SMC_prok_A chromosom 99.4 2.2E-09 4.9E-14 111.1 33.0 108 7-114 174-283 (1164)
4 PF10174 Cast: RIM-binding pro 99.3 4.3E-09 9.4E-14 106.6 28.1 227 2-228 425-715 (775)
5 TIGR02169 SMC_prok_A chromosom 99.3 2.5E-08 5.4E-13 103.4 33.0 96 7-102 181-278 (1164)
6 PF10174 Cast: RIM-binding pro 99.2 2.5E-10 5.4E-15 115.5 16.9 128 103-235 17-144 (775)
7 TIGR02168 SMC_prok_B chromosom 99.0 1.5E-06 3.3E-11 89.8 32.9 113 8-120 184-298 (1179)
8 PRK04863 mukB cell division pr 98.8 2.1E-05 4.6E-10 85.1 31.5 154 7-160 304-474 (1486)
9 PF05701 WEMBL: Weak chloropla 98.3 0.0038 8.3E-08 61.3 30.0 25 6-30 165-189 (522)
10 PRK03918 chromosome segregatio 98.2 0.0037 8E-08 64.1 30.5 21 16-36 458-478 (880)
11 KOG4809|consensus 98.2 0.0013 2.9E-08 64.3 24.8 199 22-225 311-569 (654)
12 COG1196 Smc Chromosome segrega 98.2 0.0071 1.5E-07 64.6 32.5 59 165-223 858-916 (1163)
13 PRK02224 chromosome segregatio 98.1 0.009 1.9E-07 61.5 31.2 82 128-209 606-692 (880)
14 PF05701 WEMBL: Weak chloropla 98.1 0.0077 1.7E-07 59.2 29.0 88 138-225 340-427 (522)
15 PRK02224 chromosome segregatio 98.1 0.013 2.9E-07 60.3 31.4 23 16-38 474-496 (880)
16 KOG0250|consensus 98.1 0.013 2.9E-07 61.3 30.5 217 10-232 221-456 (1074)
17 KOG0996|consensus 98.0 0.003 6.5E-08 66.4 25.1 171 52-229 380-573 (1293)
18 KOG0161|consensus 97.9 0.02 4.3E-07 63.7 30.1 145 87-231 990-1144(1930)
19 KOG0996|consensus 97.9 0.028 6.1E-07 59.4 29.2 208 28-235 374-593 (1293)
20 PF12128 DUF3584: Protein of u 97.8 0.072 1.6E-06 57.3 32.3 223 12-234 276-526 (1201)
21 PHA02562 46 endonuclease subun 97.8 0.041 8.9E-07 53.6 28.4 63 165-227 339-401 (562)
22 PRK03918 chromosome segregatio 97.7 0.078 1.7E-06 54.5 30.2 26 10-35 459-484 (880)
23 KOG0250|consensus 97.7 0.069 1.5E-06 56.2 28.5 123 98-224 339-462 (1074)
24 KOG0161|consensus 97.7 0.09 2E-06 58.7 30.2 108 128-235 1009-1120(1930)
25 TIGR00606 rad50 rad50. This fa 97.7 0.1 2.2E-06 56.6 30.1 68 165-232 972-1041(1311)
26 TIGR00606 rad50 rad50. This fa 97.6 0.16 3.4E-06 55.2 29.9 37 187-223 891-927 (1311)
27 PF07888 CALCOCO1: Calcium bin 97.5 0.12 2.7E-06 51.1 27.0 124 72-195 196-322 (546)
28 PRK11637 AmiB activator; Provi 97.5 0.11 2.5E-06 49.5 27.9 22 74-95 95-116 (428)
29 KOG0964|consensus 97.4 0.22 4.7E-06 52.2 29.4 60 9-68 183-242 (1200)
30 PF07888 CALCOCO1: Calcium bin 97.4 0.16 3.5E-06 50.3 30.0 41 69-109 207-247 (546)
31 PF00261 Tropomyosin: Tropomyo 97.4 0.082 1.8E-06 46.7 28.9 176 50-232 37-224 (237)
32 PHA02562 46 endonuclease subun 97.3 0.2 4.2E-06 48.8 26.6 61 51-111 215-277 (562)
33 PRK04778 septation ring format 97.2 0.26 5.7E-06 48.9 26.4 108 125-232 314-431 (569)
34 PF00261 Tropomyosin: Tropomyo 97.2 0.13 2.9E-06 45.4 26.6 200 8-221 6-234 (237)
35 PRK04863 mukB cell division pr 97.1 0.67 1.5E-05 51.2 30.6 36 7-42 227-262 (1486)
36 PRK11637 AmiB activator; Provi 97.1 0.3 6.5E-06 46.6 28.9 48 69-116 83-130 (428)
37 PF12128 DUF3584: Protein of u 97.0 0.75 1.6E-05 49.6 28.1 108 127-235 434-541 (1201)
38 PRK04778 septation ring format 97.0 0.47 1E-05 47.1 25.6 215 10-224 275-502 (569)
39 TIGR01843 type_I_hlyD type I s 97.0 0.29 6.2E-06 45.5 21.2 19 214-232 248-266 (423)
40 KOG0933|consensus 96.8 0.86 1.9E-05 48.1 27.5 138 83-227 735-879 (1174)
41 PF06160 EzrA: Septation ring 96.6 0.87 1.9E-05 45.3 25.0 211 9-219 270-493 (560)
42 PRK01156 chromosome segregatio 96.5 1.3 2.8E-05 46.0 31.1 37 165-201 683-719 (895)
43 KOG0971|consensus 96.5 1.5 3.2E-05 46.1 24.0 81 79-159 273-356 (1243)
44 PRK09039 hypothetical protein; 96.4 0.89 1.9E-05 42.6 20.3 135 69-203 47-184 (343)
45 PF10473 CENP-F_leu_zip: Leuci 96.3 0.12 2.6E-06 42.7 12.2 60 158-217 19-78 (140)
46 PRK09039 hypothetical protein; 96.3 0.48 1E-05 44.3 17.7 51 167-217 134-184 (343)
47 PF14915 CCDC144C: CCDC144C pr 96.2 0.99 2.1E-05 41.7 27.5 196 19-222 8-245 (305)
48 KOG1029|consensus 96.2 1.9 4E-05 44.7 28.6 155 79-233 420-584 (1118)
49 PF12718 Tropomyosin_1: Tropom 96.2 0.58 1.2E-05 38.6 17.8 46 72-117 4-49 (143)
50 KOG0995|consensus 96.0 1.3 2.8E-05 44.2 19.4 69 90-162 253-321 (581)
51 PF10481 CENP-F_N: Cenp-F N-te 95.9 1 2.2E-05 41.2 17.0 137 17-157 18-191 (307)
52 COG1579 Zn-ribbon protein, pos 95.9 1.3 2.7E-05 39.8 20.2 22 199-220 150-171 (239)
53 PF12718 Tropomyosin_1: Tropom 95.8 0.87 1.9E-05 37.5 18.5 128 104-231 8-141 (143)
54 TIGR01843 type_I_hlyD type I s 95.8 1.6 3.6E-05 40.4 21.7 24 207-230 248-271 (423)
55 PF00769 ERM: Ezrin/radixin/mo 95.8 0.58 1.3E-05 41.9 15.0 65 164-228 62-126 (246)
56 PF00769 ERM: Ezrin/radixin/mo 95.6 1.3 2.9E-05 39.5 16.8 27 95-121 11-37 (246)
57 PF05667 DUF812: Protein of un 95.6 2.5 5.5E-05 42.5 20.3 87 69-155 329-421 (594)
58 PF15619 Lebercilin: Ciliary p 95.3 1.7 3.6E-05 37.7 21.6 109 125-233 65-185 (194)
59 KOG4674|consensus 95.2 6.8 0.00015 44.1 30.0 70 165-234 814-887 (1822)
60 PF08317 Spc7: Spc7 kinetochor 95.2 2.5 5.5E-05 39.1 22.8 57 127-183 208-264 (325)
61 PF04156 IncA: IncA protein; 95.0 1.8 4E-05 36.4 16.2 38 85-122 77-114 (191)
62 TIGR02680 conserved hypothetic 95.0 6.9 0.00015 43.0 30.1 34 127-160 332-365 (1353)
63 PF01576 Myosin_tail_1: Myosin 95.0 0.0067 1.4E-07 63.0 0.0 207 14-224 128-368 (859)
64 PF14915 CCDC144C: CCDC144C pr 94.9 3.1 6.8E-05 38.4 26.2 182 13-194 16-245 (305)
65 KOG4674|consensus 94.9 8.6 0.00019 43.3 29.6 141 86-230 126-270 (1822)
66 smart00787 Spc7 Spc7 kinetocho 94.8 3.4 7.3E-05 38.4 19.0 71 164-234 205-286 (312)
67 PF09730 BicD: Microtubule-ass 94.8 5.7 0.00012 40.9 21.3 156 69-224 266-459 (717)
68 KOG0018|consensus 94.7 7.1 0.00015 41.7 25.1 151 69-226 705-891 (1141)
69 PF01576 Myosin_tail_1: Myosin 94.5 0.014 3.1E-07 60.6 1.2 171 58-228 667-857 (859)
70 KOG0994|consensus 94.3 9.4 0.0002 41.4 25.9 51 165-222 1691-1741(1758)
71 KOG0933|consensus 94.3 8.6 0.00019 41.0 28.0 210 21-230 202-459 (1174)
72 PF04849 HAP1_N: HAP1 N-termin 94.3 4.6 9.9E-05 37.5 18.2 68 89-156 160-234 (306)
73 PF04156 IncA: IncA protein; 94.1 2.2 4.7E-05 36.0 13.5 49 163-211 123-171 (191)
74 PF00038 Filament: Intermediat 94.1 4.3 9.3E-05 36.7 31.6 82 57-138 55-141 (312)
75 PF10481 CENP-F_N: Cenp-F N-te 94.1 4.7 0.0001 37.0 17.3 80 82-161 39-128 (307)
76 TIGR03007 pepcterm_ChnLen poly 94.0 6.2 0.00013 38.1 21.3 67 166-232 313-382 (498)
77 PRK10884 SH3 domain-containing 93.9 1.6 3.4E-05 38.3 12.4 54 183-236 124-177 (206)
78 PF15070 GOLGA2L5: Putative go 93.8 8.5 0.00018 39.0 26.6 39 128-166 202-240 (617)
79 COG4942 Membrane-bound metallo 93.7 7 0.00015 37.8 22.1 48 76-123 39-86 (420)
80 PF04111 APG6: Autophagy prote 93.7 1.7 3.6E-05 40.3 12.8 33 127-159 49-81 (314)
81 PF06818 Fez1: Fez1; InterPro 93.7 4.5 9.8E-05 35.4 21.5 95 49-154 10-106 (202)
82 KOG0963|consensus 93.5 9.3 0.0002 38.6 27.9 141 87-230 187-342 (629)
83 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.2 3.7 8E-05 33.0 14.2 39 165-203 61-99 (132)
84 KOG0977|consensus 92.9 11 0.00024 37.7 19.2 42 191-232 169-217 (546)
85 KOG0978|consensus 92.9 13 0.00027 38.3 26.0 45 187-231 576-620 (698)
86 KOG1962|consensus 92.4 1.1 2.4E-05 39.6 9.1 62 147-208 149-210 (216)
87 PF15070 GOLGA2L5: Putative go 92.3 14 0.00031 37.5 27.9 51 163-213 209-259 (617)
88 KOG0243|consensus 92.1 14 0.00029 39.7 18.0 39 180-218 535-573 (1041)
89 PF15619 Lebercilin: Ciliary p 91.8 8 0.00017 33.5 22.0 32 159-190 121-152 (194)
90 PF12325 TMF_TATA_bd: TATA ele 91.7 4.9 0.00011 32.3 11.5 38 163-200 75-112 (120)
91 PF08317 Spc7: Spc7 kinetochor 91.6 11 0.00024 34.8 25.6 106 127-235 176-292 (325)
92 KOG0963|consensus 91.4 18 0.00039 36.6 20.2 126 36-162 222-350 (629)
93 PF08614 ATG16: Autophagy prot 91.3 2.6 5.6E-05 36.1 10.2 7 85-91 105-111 (194)
94 TIGR01000 bacteriocin_acc bact 91.2 15 0.00032 35.4 22.4 27 209-235 288-314 (457)
95 PF12325 TMF_TATA_bd: TATA ele 91.2 6.8 0.00015 31.5 12.0 82 78-159 19-106 (120)
96 PF04111 APG6: Autophagy prote 90.9 7.4 0.00016 36.0 13.5 43 127-169 42-84 (314)
97 PF06818 Fez1: Fez1; InterPro 90.8 11 0.00023 33.1 16.6 40 70-109 12-51 (202)
98 PF10498 IFT57: Intra-flagella 90.8 14 0.00031 34.9 15.4 65 95-159 219-283 (359)
99 PF13870 DUF4201: Domain of un 90.7 9 0.0002 32.1 20.6 91 90-184 43-133 (177)
100 COG4026 Uncharacterized protei 90.6 4.1 9E-05 36.5 10.8 63 128-190 142-204 (290)
101 KOG0978|consensus 90.6 23 0.0005 36.5 28.4 85 127-211 530-614 (698)
102 PF10473 CENP-F_leu_zip: Leuci 90.3 9.2 0.0002 31.6 18.4 35 128-162 52-86 (140)
103 PF13514 AAA_27: AAA domain 90.3 29 0.00063 37.3 22.8 35 127-161 241-275 (1111)
104 PRK10884 SH3 domain-containing 90.2 6.1 0.00013 34.5 11.6 19 97-115 94-112 (206)
105 COG4372 Uncharacterized protei 90.1 19 0.0004 34.8 21.9 30 90-119 110-139 (499)
106 PF08614 ATG16: Autophagy prot 90.1 3.3 7.1E-05 35.4 9.7 84 127-210 94-177 (194)
107 PF09789 DUF2353: Uncharacteri 90.0 17 0.00036 34.1 23.4 144 80-229 77-227 (319)
108 COG3883 Uncharacterized protei 89.6 16 0.00035 33.3 23.0 31 165-195 160-190 (265)
109 TIGR02680 conserved hypothetic 89.5 38 0.00083 37.4 30.7 20 14-33 746-765 (1353)
110 KOG0243|consensus 89.3 34 0.00075 36.7 18.2 19 98-116 450-468 (1041)
111 KOG4673|consensus 89.3 29 0.00064 35.9 28.5 165 17-181 446-630 (961)
112 PF04849 HAP1_N: HAP1 N-termin 89.1 19 0.00042 33.5 19.9 151 80-230 95-287 (306)
113 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.0 10 0.00023 30.4 17.6 20 102-121 58-77 (132)
114 PF05622 HOOK: HOOK protein; 89.0 0.12 2.6E-06 52.6 0.0 64 50-113 326-401 (713)
115 KOG0979|consensus 88.9 36 0.00078 36.4 24.8 48 69-116 256-303 (1072)
116 KOG4643|consensus 88.9 37 0.0008 36.5 25.8 90 126-215 413-512 (1195)
117 COG4026 Uncharacterized protei 88.6 4.7 0.0001 36.1 9.6 66 164-229 136-201 (290)
118 KOG0971|consensus 88.5 38 0.00082 36.2 27.3 124 50-177 319-445 (1243)
119 PF06160 EzrA: Septation ring 88.4 28 0.00062 34.6 27.1 129 102-230 350-490 (560)
120 PF13514 AAA_27: AAA domain 88.3 40 0.00087 36.3 25.1 37 13-49 126-162 (1111)
121 PF09730 BicD: Microtubule-ass 87.8 37 0.00079 35.2 20.0 130 50-187 42-180 (717)
122 PF15294 Leu_zip: Leucine zipp 87.4 23 0.00051 32.5 18.1 47 15-61 35-98 (278)
123 PF09728 Taxilin: Myosin-like 87.3 24 0.00053 32.6 25.3 50 165-214 260-309 (309)
124 TIGR00998 8a0101 efflux pump m 87.2 22 0.00048 32.1 14.4 13 221-233 188-200 (334)
125 KOG0964|consensus 87.2 47 0.001 35.7 22.3 92 69-160 707-810 (1200)
126 PF11559 ADIP: Afadin- and alp 87.1 15 0.00032 29.9 15.5 95 134-228 51-149 (151)
127 KOG0979|consensus 86.6 50 0.0011 35.5 22.5 45 179-223 313-357 (1072)
128 PF15066 CAGE1: Cancer-associa 86.5 35 0.00077 33.6 19.6 50 100-149 450-499 (527)
129 PF10498 IFT57: Intra-flagella 86.4 22 0.00047 33.7 13.4 65 82-149 198-262 (359)
130 KOG1853|consensus 86.2 27 0.00058 32.0 13.4 73 100-186 24-96 (333)
131 COG0419 SbcC ATPase involved i 86.1 48 0.001 34.9 29.1 34 172-205 405-438 (908)
132 PF05335 DUF745: Protein of un 86.0 22 0.00047 30.8 15.1 103 127-229 73-175 (188)
133 PF09726 Macoilin: Transmembra 85.8 46 0.001 34.3 19.9 160 69-236 461-639 (697)
134 PF15294 Leu_zip: Leucine zipp 85.8 29 0.00062 31.9 14.2 109 101-223 130-247 (278)
135 KOG0977|consensus 85.7 41 0.0009 33.7 22.6 124 37-160 56-194 (546)
136 KOG0995|consensus 85.7 42 0.00091 33.8 29.1 56 12-68 223-278 (581)
137 PF14662 CCDC155: Coiled-coil 85.5 24 0.00052 30.7 23.3 31 69-99 23-53 (193)
138 KOG1962|consensus 85.3 14 0.00029 32.8 10.7 26 168-193 156-181 (216)
139 PF06008 Laminin_I: Laminin Do 85.3 27 0.00058 31.1 19.6 50 185-234 154-207 (264)
140 PF13870 DUF4201: Domain of un 84.2 23 0.0005 29.6 21.7 88 69-160 43-130 (177)
141 KOG0999|consensus 84.1 51 0.0011 33.4 20.4 44 80-124 35-78 (772)
142 PF05622 HOOK: HOOK protein; 83.3 0.36 7.8E-06 49.2 0.0 157 70-227 241-420 (713)
143 PRK11281 hypothetical protein; 83.0 76 0.0017 34.6 22.1 205 27-232 39-269 (1113)
144 PF10146 zf-C4H2: Zinc finger- 83.0 34 0.00073 30.5 12.6 68 89-156 32-102 (230)
145 PF09755 DUF2046: Uncharacteri 82.9 41 0.00089 31.4 29.3 217 4-220 14-290 (310)
146 PF12777 MT: Microtubule-bindi 82.8 41 0.00089 31.3 17.9 68 166-233 217-284 (344)
147 KOG0982|consensus 82.4 51 0.0011 32.2 19.9 160 74-233 221-388 (502)
148 PF10168 Nup88: Nuclear pore c 82.1 67 0.0014 33.3 17.9 104 56-159 565-670 (717)
149 KOG0980|consensus 82.0 74 0.0016 33.8 24.5 24 164-187 495-518 (980)
150 TIGR03007 pepcterm_ChnLen poly 81.6 52 0.0011 31.7 21.0 24 179-202 357-380 (498)
151 PF11559 ADIP: Afadin- and alp 81.6 27 0.00058 28.4 12.7 36 80-115 64-99 (151)
152 PF14662 CCDC155: Coiled-coil 81.3 36 0.00078 29.6 21.7 37 80-116 20-56 (193)
153 KOG3647|consensus 81.1 46 0.00099 30.7 13.5 71 69-139 106-176 (338)
154 PF11932 DUF3450: Protein of u 80.8 39 0.00086 29.8 14.1 58 125-182 39-96 (251)
155 COG4477 EzrA Negative regulato 80.5 67 0.0014 32.2 23.7 214 5-229 185-427 (570)
156 PF05557 MAD: Mitotic checkpoi 79.5 31 0.00066 35.4 12.3 35 126-160 501-535 (722)
157 smart00787 Spc7 Spc7 kinetocho 79.3 54 0.0012 30.4 26.8 133 73-205 142-285 (312)
158 PF10234 Cluap1: Clusterin-ass 79.2 20 0.00042 32.8 9.7 66 147-212 174-239 (267)
159 PF11180 DUF2968: Protein of u 78.7 44 0.00095 29.1 11.3 54 174-227 123-176 (192)
160 PF05384 DegS: Sensor protein 78.6 39 0.00084 28.5 18.7 123 83-205 28-154 (159)
161 KOG0994|consensus 78.4 1.1E+02 0.0025 33.7 29.0 68 127-194 1604-1671(1758)
162 PF12777 MT: Microtubule-bindi 78.3 14 0.0003 34.4 8.7 89 135-230 221-309 (344)
163 TIGR03752 conj_TIGR03752 integ 77.4 28 0.0006 34.3 10.6 78 137-214 61-139 (472)
164 PF08606 Prp19: Prp19/Pso4-lik 77.2 26 0.00056 25.7 8.3 60 165-224 10-69 (70)
165 PF10186 Atg14: UV radiation r 77.1 51 0.0011 29.0 18.0 76 128-203 63-138 (302)
166 COG0419 SbcC ATPase involved i 77.0 1E+02 0.0022 32.4 31.8 67 165-231 370-436 (908)
167 PF09726 Macoilin: Transmembra 76.8 97 0.0021 32.0 24.8 34 126-159 543-576 (697)
168 PRK10476 multidrug resistance 76.6 62 0.0013 29.7 15.8 19 142-160 121-139 (346)
169 PF10186 Atg14: UV radiation r 76.3 54 0.0012 28.9 18.5 25 207-231 121-145 (302)
170 PF05667 DUF812: Protein of un 75.9 95 0.0021 31.5 23.7 80 83-162 395-481 (594)
171 KOG3647|consensus 75.8 67 0.0014 29.7 15.1 124 87-210 44-180 (338)
172 PF14197 Cep57_CLD_2: Centroso 75.5 28 0.00061 25.2 9.0 42 189-230 24-65 (69)
173 TIGR02971 heterocyst_DevB ABC 75.0 64 0.0014 29.1 16.7 28 133-160 95-122 (327)
174 KOG0018|consensus 74.8 1.3E+02 0.0029 32.6 25.3 131 28-158 192-340 (1141)
175 PF02183 HALZ: Homeobox associ 74.7 13 0.00028 24.8 5.5 39 191-229 5-43 (45)
176 KOG2264|consensus 74.4 17 0.00037 36.8 8.4 61 138-198 89-149 (907)
177 COG1340 Uncharacterized archae 74.2 74 0.0016 29.5 30.1 72 156-227 165-236 (294)
178 TIGR01000 bacteriocin_acc bact 73.9 87 0.0019 30.1 21.8 30 202-231 288-317 (457)
179 PF05557 MAD: Mitotic checkpoi 73.8 1.1 2.3E-05 45.9 0.0 20 132-151 118-137 (722)
180 TIGR00998 8a0101 efflux pump m 71.5 78 0.0017 28.5 14.8 15 215-229 189-203 (334)
181 COG2433 Uncharacterized conser 71.4 77 0.0017 32.3 12.2 30 126-155 479-508 (652)
182 PF06005 DUF904: Protein of un 70.8 38 0.00083 24.7 10.3 62 130-198 6-67 (72)
183 PF09755 DUF2046: Uncharacteri 70.2 95 0.0021 29.0 27.5 87 87-173 111-202 (310)
184 PF13851 GAS: Growth-arrest sp 70.1 72 0.0016 27.6 21.6 112 69-181 28-139 (201)
185 PF10146 zf-C4H2: Zinc finger- 69.9 81 0.0017 28.1 14.2 68 51-118 34-103 (230)
186 PF08172 CASP_C: CASP C termin 69.6 45 0.00097 30.0 9.4 99 78-176 2-134 (248)
187 KOG1003|consensus 69.5 78 0.0017 27.8 24.3 137 20-156 7-151 (205)
188 PF11180 DUF2968: Protein of u 69.3 77 0.0017 27.6 14.6 41 165-205 128-168 (192)
189 PF04728 LPP: Lipoprotein leuc 68.8 38 0.00081 23.8 7.0 41 161-201 8-48 (56)
190 PRK11578 macrolide transporter 68.4 73 0.0016 29.5 11.0 11 215-225 168-178 (370)
191 PRK03598 putative efflux pump 68.3 94 0.002 28.2 15.0 19 214-232 180-198 (331)
192 PF05911 DUF869: Plant protein 67.9 1.6E+02 0.0035 30.8 20.3 52 126-177 594-645 (769)
193 KOG4360|consensus 67.8 1.4E+02 0.003 30.0 15.3 122 33-156 179-303 (596)
194 PF05010 TACC: Transforming ac 67.6 86 0.0019 27.5 25.6 43 80-122 67-109 (207)
195 KOG1029|consensus 66.8 1.8E+02 0.0039 30.9 25.1 34 125-158 490-523 (1118)
196 COG4477 EzrA Negative regulato 66.6 1.5E+02 0.0032 29.9 24.4 207 8-214 272-491 (570)
197 PF11932 DUF3450: Protein of u 66.5 93 0.002 27.5 14.3 60 131-190 38-97 (251)
198 TIGR03185 DNA_S_dndD DNA sulfu 66.5 1.5E+02 0.0033 29.9 28.5 24 100-123 266-289 (650)
199 PF04012 PspA_IM30: PspA/IM30 65.9 86 0.0019 26.9 18.5 54 69-122 92-145 (221)
200 KOG0249|consensus 65.8 1.8E+02 0.0039 30.5 16.0 39 125-163 160-198 (916)
201 PF15066 CAGE1: Cancer-associa 65.7 1.5E+02 0.0032 29.5 21.8 104 127-230 389-521 (527)
202 TIGR01010 BexC_CtrB_KpsE polys 65.6 1E+02 0.0022 28.5 11.4 55 180-234 245-307 (362)
203 PRK11556 multidrug efflux syst 65.0 40 0.00086 32.1 8.7 26 203-228 168-193 (415)
204 COG1566 EmrA Multidrug resista 64.9 1.3E+02 0.0028 28.5 13.7 24 198-221 183-206 (352)
205 PF09738 DUF2051: Double stran 64.8 1.2E+02 0.0026 28.1 12.5 62 152-213 99-162 (302)
206 PF12795 MscS_porin: Mechanose 64.5 99 0.0021 27.1 22.5 22 100-121 82-103 (240)
207 KOG4360|consensus 64.1 1.6E+02 0.0036 29.5 16.8 58 125-182 202-259 (596)
208 PF10168 Nup88: Nuclear pore c 63.6 1.9E+02 0.0041 30.0 19.7 26 202-227 689-714 (717)
209 PF05529 Bap31: B-cell recepto 62.4 85 0.0018 26.5 9.4 35 170-204 154-188 (192)
210 PF06005 DUF904: Protein of un 62.3 59 0.0013 23.7 10.0 65 165-229 6-70 (72)
211 PF13851 GAS: Growth-arrest sp 62.1 1E+02 0.0023 26.6 19.7 47 143-189 87-133 (201)
212 PRK09578 periplasmic multidrug 61.6 49 0.0011 30.9 8.5 19 211-229 152-170 (385)
213 PF10205 KLRAQ: Predicted coil 60.3 82 0.0018 24.7 8.8 48 69-116 27-74 (102)
214 PRK10476 multidrug resistance 59.7 1.4E+02 0.0031 27.3 15.9 19 127-145 151-169 (346)
215 PF07106 TBPIP: Tat binding pr 59.3 1E+02 0.0022 25.5 10.9 29 130-158 74-102 (169)
216 KOG4643|consensus 58.9 2.7E+02 0.0059 30.3 27.2 92 69-160 402-499 (1195)
217 PF14197 Cep57_CLD_2: Centroso 58.1 69 0.0015 23.2 9.0 11 176-186 25-35 (69)
218 TIGR02338 gimC_beta prefoldin, 57.4 88 0.0019 24.2 12.3 30 130-159 69-98 (110)
219 COG4942 Membrane-bound metallo 56.7 2E+02 0.0043 28.1 24.8 43 137-179 166-208 (420)
220 PF04728 LPP: Lipoprotein leuc 55.7 69 0.0015 22.5 7.6 43 146-188 7-49 (56)
221 PF13863 DUF4200: Domain of un 55.5 96 0.0021 24.0 15.1 37 135-171 67-103 (126)
222 COG2433 Uncharacterized conser 55.2 2.5E+02 0.0055 28.8 12.8 29 128-156 474-502 (652)
223 PRK10803 tol-pal system protei 55.2 99 0.0021 27.8 9.0 8 214-221 159-166 (263)
224 KOG0962|consensus 55.0 3.4E+02 0.0074 30.3 25.5 12 195-206 910-921 (1294)
225 PF10458 Val_tRNA-synt_C: Valy 54.3 74 0.0016 22.4 7.1 22 165-186 6-27 (66)
226 PF07106 TBPIP: Tat binding pr 53.3 1.3E+02 0.0028 24.9 10.3 46 133-178 114-160 (169)
227 COG3074 Uncharacterized protei 53.0 91 0.002 23.0 9.2 11 85-95 21-31 (79)
228 KOG0804|consensus 52.2 2.5E+02 0.0054 27.8 15.9 25 97-121 340-365 (493)
229 PRK10246 exonuclease subunit S 51.4 3.4E+02 0.0075 29.2 32.8 32 13-44 226-257 (1047)
230 PF09789 DUF2353: Uncharacteri 51.4 2.1E+02 0.0046 26.8 20.6 148 82-229 16-206 (319)
231 cd07654 F-BAR_FCHSD The F-BAR 50.4 1.9E+02 0.0042 26.1 12.5 67 161-227 115-181 (264)
232 PF12761 End3: Actin cytoskele 50.0 1.8E+02 0.0038 25.5 9.8 27 88-114 93-121 (195)
233 TIGR01730 RND_mfp RND family e 49.8 1.5E+02 0.0032 26.1 9.3 13 216-228 120-132 (322)
234 TIGR01005 eps_transp_fam exopo 49.8 3E+02 0.0066 28.1 24.5 28 204-231 375-402 (754)
235 TIGR01010 BexC_CtrB_KpsE polys 49.7 2.1E+02 0.0046 26.4 16.6 31 94-124 168-198 (362)
236 TIGR03545 conserved hypothetic 49.4 2.9E+02 0.0063 27.8 12.7 79 75-158 164-242 (555)
237 TIGR02894 DNA_bind_RsfA transc 49.3 1.3E+02 0.0027 25.6 8.0 44 165-208 106-149 (161)
238 KOG1853|consensus 49.0 2.2E+02 0.0047 26.2 17.4 25 99-123 94-118 (333)
239 KOG0804|consensus 48.8 2.8E+02 0.0061 27.4 15.3 63 90-156 348-410 (493)
240 PF05278 PEARLI-4: Arabidopsis 48.6 2.2E+02 0.0047 26.1 10.6 16 8-23 147-162 (269)
241 PF07798 DUF1640: Protein of u 48.5 1.6E+02 0.0035 24.6 12.7 15 141-155 137-151 (177)
242 PF05483 SCP-1: Synaptonemal c 48.3 3.4E+02 0.0074 28.3 29.2 36 127-162 586-621 (786)
243 PRK10559 p-hydroxybenzoic acid 48.2 1.1E+02 0.0024 27.9 8.3 12 216-227 140-151 (310)
244 PRK03947 prefoldin subunit alp 48.0 1.4E+02 0.003 23.8 11.8 43 127-169 93-135 (140)
245 PF10205 KLRAQ: Predicted coil 47.4 1.4E+02 0.003 23.5 10.5 32 128-159 40-71 (102)
246 KOG4673|consensus 47.2 3.6E+02 0.0079 28.3 25.7 24 4-27 330-353 (961)
247 PF08647 BRE1: BRE1 E3 ubiquit 46.9 1.3E+02 0.0027 22.9 11.7 57 128-184 24-80 (96)
248 cd07657 F-BAR_Fes_Fer The F-BA 46.2 2.1E+02 0.0046 25.3 14.8 43 163-205 112-154 (237)
249 PF09304 Cortex-I_coil: Cortex 45.9 1.5E+02 0.0033 23.5 13.3 67 88-158 8-74 (107)
250 TIGR03495 phage_LysB phage lys 45.5 1.7E+02 0.0037 24.0 10.3 30 195-224 65-94 (135)
251 PRK15422 septal ring assembly 45.3 1.3E+02 0.0028 22.6 9.9 47 127-173 24-70 (79)
252 PRK03947 prefoldin subunit alp 45.3 1.6E+02 0.0034 23.5 12.7 14 167-180 119-132 (140)
253 PRK15396 murein lipoprotein; P 45.2 1.2E+02 0.0026 22.6 6.6 7 175-181 58-64 (78)
254 COG1382 GimC Prefoldin, chaper 45.2 1.6E+02 0.0035 23.7 10.1 21 130-150 72-92 (119)
255 PRK15396 murein lipoprotein; P 45.0 1.3E+02 0.0028 22.4 6.9 38 164-201 33-70 (78)
256 TIGR00634 recN DNA repair prot 45.0 3.2E+02 0.007 27.1 21.5 12 57-68 190-201 (563)
257 PF09728 Taxilin: Myosin-like 44.4 2.6E+02 0.0057 25.8 30.9 150 83-232 115-299 (309)
258 PF10234 Cluap1: Clusterin-ass 44.2 2.5E+02 0.0055 25.6 14.0 19 135-153 197-215 (267)
259 PF05384 DegS: Sensor protein 43.9 2E+02 0.0042 24.2 18.3 128 94-232 25-153 (159)
260 PRK09343 prefoldin subunit bet 43.9 1.6E+02 0.0035 23.3 13.1 31 130-160 73-103 (121)
261 PRK15136 multidrug efflux syst 43.6 2.9E+02 0.0062 26.0 15.2 21 140-160 125-145 (390)
262 PF08826 DMPK_coil: DMPK coile 43.4 1.2E+02 0.0026 21.6 8.8 12 219-230 46-57 (61)
263 KOG0962|consensus 43.3 5.2E+02 0.011 28.9 26.0 101 127-227 825-928 (1294)
264 PF15035 Rootletin: Ciliary ro 43.1 2.1E+02 0.0046 24.4 11.8 113 70-186 4-125 (182)
265 PF06120 Phage_HK97_TLTM: Tail 42.8 2.8E+02 0.0061 25.8 16.1 97 54-157 53-156 (301)
266 PF06156 DUF972: Protein of un 42.6 1.6E+02 0.0034 23.1 7.3 49 128-176 8-56 (107)
267 PRK09841 cryptic autophosphory 42.4 3E+02 0.0064 28.3 11.2 32 127-158 266-297 (726)
268 PF06785 UPF0242: Uncharacteri 42.0 3.2E+02 0.0069 26.1 11.7 39 146-184 89-127 (401)
269 cd07618 BAR_Rich1 The Bin/Amph 41.9 1.9E+02 0.0042 26.0 8.6 66 165-230 109-185 (246)
270 PF12795 MscS_porin: Mechanose 41.8 2.4E+02 0.0052 24.6 20.5 29 94-122 83-111 (240)
271 PF07889 DUF1664: Protein of u 41.2 1.9E+02 0.0042 23.4 11.7 41 128-168 68-108 (126)
272 TIGR01005 eps_transp_fam exopo 40.9 4.1E+02 0.009 27.1 20.8 76 80-158 192-267 (754)
273 TIGR03545 conserved hypothetic 40.7 4E+02 0.0086 26.9 11.5 81 127-207 197-278 (555)
274 PRK11519 tyrosine kinase; Prov 40.6 4.1E+02 0.0088 27.3 11.8 31 128-158 267-297 (719)
275 KOG4460|consensus 40.6 4.2E+02 0.0091 27.1 17.3 94 69-162 603-696 (741)
276 TIGR02449 conserved hypothetic 40.5 1.4E+02 0.003 21.5 7.9 43 158-200 16-58 (65)
277 PF15369 KIAA1328: Uncharacter 40.3 3.2E+02 0.007 25.7 11.6 87 95-181 7-93 (328)
278 PF05529 Bap31: B-cell recepto 40.2 2.2E+02 0.0049 23.9 8.8 32 199-230 155-186 (192)
279 cd00632 Prefoldin_beta Prefold 39.9 1.7E+02 0.0036 22.3 11.8 30 130-159 65-94 (105)
280 TIGR03752 conj_TIGR03752 integ 39.8 3.4E+02 0.0074 26.9 10.5 25 91-115 68-92 (472)
281 PF05377 FlaC_arch: Flagella a 39.8 1.2E+02 0.0027 21.1 5.5 26 95-120 13-38 (55)
282 KOG0612|consensus 37.6 6.2E+02 0.013 28.2 29.1 28 143-170 624-651 (1317)
283 TIGR03185 DNA_S_dndD DNA sulfu 37.6 4.5E+02 0.0097 26.6 30.3 44 165-208 423-466 (650)
284 cd07600 BAR_Gvp36 The Bin/Amph 37.5 3E+02 0.0066 24.6 11.3 39 165-203 135-173 (242)
285 COG5185 HEC1 Protein involved 37.0 4.5E+02 0.0097 26.4 19.6 164 73-237 269-435 (622)
286 PF10212 TTKRSYEDQ: Predicted 37.0 4.5E+02 0.0097 26.4 14.1 39 165-203 443-481 (518)
287 PF08826 DMPK_coil: DMPK coile 36.3 1.6E+02 0.0034 20.9 8.6 32 125-156 29-60 (61)
288 PF13874 Nup54: Nucleoporin co 36.2 2.3E+02 0.005 22.9 7.8 64 93-156 34-100 (141)
289 KOG2264|consensus 35.7 1.3E+02 0.0028 30.8 7.0 52 69-120 94-145 (907)
290 cd07656 F-BAR_srGAP The F-BAR 35.3 3.2E+02 0.007 24.2 12.9 52 158-209 112-163 (241)
291 COG4372 Uncharacterized protei 35.2 4.4E+02 0.0095 25.8 25.6 88 69-156 124-214 (499)
292 PF07795 DUF1635: Protein of u 34.9 1.1E+02 0.0024 27.1 5.8 37 189-225 24-60 (214)
293 cd00632 Prefoldin_beta Prefold 34.7 2E+02 0.0044 21.8 11.0 32 127-158 69-100 (105)
294 KOG0972|consensus 34.6 4E+02 0.0086 25.1 11.9 121 83-230 206-326 (384)
295 TIGR02894 DNA_bind_RsfA transc 34.4 2.9E+02 0.0063 23.4 9.6 52 154-205 102-153 (161)
296 PF02183 HALZ: Homeobox associ 34.0 1.4E+02 0.0031 19.7 5.5 20 163-182 19-38 (45)
297 PRK10803 tol-pal system protei 33.8 3.2E+02 0.0069 24.5 8.8 45 127-171 39-83 (263)
298 KOG0982|consensus 33.1 4.9E+02 0.011 25.7 19.5 91 34-124 279-374 (502)
299 PRK11556 multidrug efflux syst 33.0 3.3E+02 0.0071 25.9 9.2 15 144-158 134-148 (415)
300 TIGR02231 conserved hypothetic 32.8 4.8E+02 0.01 25.5 11.8 29 129-157 72-100 (525)
301 PRK13729 conjugal transfer pil 32.7 2.1E+02 0.0046 28.3 7.9 19 168-186 102-120 (475)
302 PF05266 DUF724: Protein of un 32.2 3.3E+02 0.0071 23.4 15.3 59 132-190 100-158 (190)
303 cd07678 F-BAR_FCHSD1 The F-BAR 32.2 3.9E+02 0.0084 24.3 11.6 71 157-227 110-180 (263)
304 PF05103 DivIVA: DivIVA protei 32.0 35 0.00075 26.6 2.1 51 131-181 28-78 (131)
305 KOG4571|consensus 31.9 1.8E+02 0.0039 27.0 6.8 46 72-117 245-290 (294)
306 PF10212 TTKRSYEDQ: Predicted 31.9 5.4E+02 0.012 25.8 13.5 24 160-183 491-514 (518)
307 KOG0999|consensus 31.7 5.8E+02 0.013 26.2 22.2 16 10-25 5-20 (772)
308 PRK13169 DNA replication intia 31.5 2.6E+02 0.0057 22.1 7.2 47 129-175 9-55 (110)
309 PF06476 DUF1090: Protein of u 31.4 2.6E+02 0.0057 22.1 9.2 13 56-68 43-55 (115)
310 KOG0612|consensus 31.1 7.9E+02 0.017 27.5 25.7 7 196-202 668-674 (1317)
311 PF06156 DUF972: Protein of un 31.0 2.6E+02 0.0056 21.9 7.2 43 73-115 13-55 (107)
312 PF05262 Borrelia_P83: Borreli 31.0 5.4E+02 0.012 25.6 13.0 19 168-186 279-297 (489)
313 TIGR02977 phageshock_pspA phag 31.0 3.5E+02 0.0076 23.4 19.1 40 74-113 98-137 (219)
314 PF04582 Reo_sigmaC: Reovirus 30.8 1E+02 0.0022 29.0 5.2 35 88-122 27-61 (326)
315 cd07616 BAR_Endophilin_B1 The 30.6 3.4E+02 0.0074 24.2 8.3 68 165-232 121-190 (229)
316 PF12761 End3: Actin cytoskele 30.4 3.7E+02 0.008 23.5 11.2 38 188-225 157-194 (195)
317 PF01920 Prefoldin_2: Prefoldi 30.1 2.3E+02 0.0049 20.9 11.7 33 127-159 61-93 (106)
318 KOG2010|consensus 30.0 4.6E+02 0.01 25.0 9.2 70 37-106 126-206 (405)
319 PF09311 Rab5-bind: Rabaptin-l 30.0 28 0.00061 29.5 1.3 66 140-205 20-85 (181)
320 PF09738 DUF2051: Double stran 29.6 4.6E+02 0.01 24.3 16.2 117 37-158 91-249 (302)
321 KOG0976|consensus 29.2 7.5E+02 0.016 26.7 24.8 193 36-237 87-284 (1265)
322 PF10267 Tmemb_cc2: Predicted 29.2 5.3E+02 0.012 24.9 13.8 104 51-157 214-329 (395)
323 PRK09973 putative outer membra 28.4 2.7E+02 0.0058 21.2 6.6 30 158-187 40-69 (85)
324 PRK10929 putative mechanosensi 28.4 8.3E+02 0.018 26.9 26.4 21 25-45 56-76 (1109)
325 TIGR02338 gimC_beta prefoldin, 27.4 2.9E+02 0.0062 21.2 11.9 35 125-159 71-105 (110)
326 PF10458 Val_tRNA-synt_C: Valy 27.2 2.2E+02 0.0048 19.9 6.9 23 98-120 6-28 (66)
327 KOG3850|consensus 27.1 6E+02 0.013 24.8 16.4 116 71-199 263-378 (455)
328 PRK03598 putative efflux pump 27.0 4.7E+02 0.01 23.6 16.2 9 218-226 191-199 (331)
329 cd07595 BAR_RhoGAP_Rich-like T 26.6 4.6E+02 0.01 23.3 16.1 88 144-231 86-184 (244)
330 PF08172 CASP_C: CASP C termin 26.2 2.8E+02 0.006 24.9 7.0 38 86-123 83-120 (248)
331 COG1730 GIM5 Predicted prefold 25.3 3.9E+02 0.0085 22.1 13.4 45 127-171 93-137 (145)
332 TIGR02977 phageshock_pspA phag 25.1 4.5E+02 0.0097 22.7 18.3 24 72-95 35-58 (219)
333 PRK10698 phage shock protein P 25.0 4.7E+02 0.01 22.9 21.5 52 73-124 97-148 (222)
334 PF14817 HAUS5: HAUS augmin-li 25.0 7.7E+02 0.017 25.4 12.5 94 76-180 80-173 (632)
335 cd07651 F-BAR_PombeCdc15_like 24.6 4.6E+02 0.01 22.7 19.9 39 11-52 10-48 (236)
336 PF06810 Phage_GP20: Phage min 24.1 4.1E+02 0.009 22.0 10.2 35 88-122 12-46 (155)
337 PF02609 Exonuc_VII_S: Exonucl 23.9 2.3E+02 0.005 18.9 7.2 51 174-224 3-53 (53)
338 KOG2129|consensus 23.7 7.2E+02 0.016 24.6 18.7 59 155-220 252-314 (552)
339 KOG4593|consensus 23.4 8.7E+02 0.019 25.4 30.3 38 193-230 277-317 (716)
340 PF04582 Reo_sigmaC: Reovirus 23.3 1.7E+02 0.0037 27.6 5.2 100 83-182 36-138 (326)
341 COG1566 EmrA Multidrug resista 23.1 6.5E+02 0.014 23.8 13.9 24 125-148 148-171 (352)
342 PF03962 Mnd1: Mnd1 family; I 22.8 4.8E+02 0.01 22.2 11.4 33 127-159 61-93 (188)
343 COG1340 Uncharacterized archae 22.7 6.3E+02 0.014 23.5 25.5 117 85-205 126-249 (294)
344 TIGR01069 mutS2 MutS2 family p 22.6 9E+02 0.02 25.3 13.0 90 144-235 499-588 (771)
345 cd07648 F-BAR_FCHO The F-BAR ( 22.5 5.3E+02 0.012 22.6 19.9 75 129-214 124-198 (261)
346 PF14931 IFT20: Intraflagellar 22.3 4.1E+02 0.0089 21.2 12.0 37 168-204 71-107 (120)
347 PF09787 Golgin_A5: Golgin sub 21.6 7.8E+02 0.017 24.2 25.5 25 12-36 111-135 (511)
348 PF03961 DUF342: Protein of un 21.4 7.3E+02 0.016 23.8 10.1 65 95-159 333-406 (451)
349 cd00890 Prefoldin Prefoldin is 21.3 3.8E+02 0.0082 20.4 11.8 41 127-167 86-126 (129)
350 COG1382 GimC Prefoldin, chaper 21.1 4.4E+02 0.0096 21.2 12.3 20 72-91 17-36 (119)
351 PF05262 Borrelia_P83: Borreli 20.7 8.5E+02 0.018 24.3 13.2 74 127-202 226-299 (489)
352 PF04508 Pox_A_type_inc: Viral 20.2 1.7E+02 0.0037 16.9 2.9 20 90-109 2-21 (23)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.54 E-value=2.2e-11 Score=125.42 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=96.0
Q ss_pred cChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHH
Q psy8596 6 CSSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANE 83 (237)
Q Consensus 6 ~~Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E 83 (237)
..|..||.||.|++.|++.++..|+.|+++|++|+.+..+|+.++..++...+..+...+..+ .+..+...+..+..+
T Consensus 175 ~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 254 (1179)
T TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999998888888887 666666677777777
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 84 VGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 84 ~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
+..+...+..++..+..+...+...+..+..+...+.....
T Consensus 255 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~ 295 (1179)
T TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666666666666666666655555544
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.39 E-value=1.1e-09 Score=115.58 Aligned_cols=154 Identities=23% Similarity=0.353 Sum_probs=123.0
Q ss_pred ChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHH
Q psy8596 7 SSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEV 84 (237)
Q Consensus 7 ~Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~ 84 (237)
.|..||.||.|++.|++++++.|+.||+.|.+|..++.+++.++..++..+|..+...+..+ .+......+..+...+
T Consensus 183 ~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 262 (1163)
T COG1196 183 RTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEEL 262 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998 7788888888888888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
......++.++..+..+..++...+..+..+...+..... ....++..+......+...+..+..++.........
T Consensus 263 ~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1163)
T COG1196 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888887777777666666654 445555555555555555555555555555544444
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.37 E-value=2.2e-09 Score=111.09 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=76.0
Q ss_pred ChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHH
Q psy8596 7 SSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEV 84 (237)
Q Consensus 7 ~Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~ 84 (237)
.|..+|.++.|++.+++.++..|+.|++++++|+.+..+|+.+...+....+..+...+..+ .+.....++..+..++
T Consensus 174 ~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (1164)
T TIGR02169 174 KALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL 253 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999888887777777766666 4444444444444444
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELER 114 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e 114 (237)
..+...+..+...+..++..+..++..+..
T Consensus 254 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444433333
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.28 E-value=4.3e-09 Score=106.61 Aligned_cols=227 Identities=28% Similarity=0.406 Sum_probs=148.8
Q ss_pred CCcccChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH-------------
Q psy8596 2 QAHHCSSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL------------- 68 (237)
Q Consensus 2 ~~~~~~Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l------------- 68 (237)
|||+|+++..+++++.+++|+++.+..|..+..++++|+....+.+..++..++..+..|+.++.+.
T Consensus 425 ~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~ 504 (775)
T PF10174_consen 425 QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASK 504 (775)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ----------HhhhhHHHHHHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------
Q psy8596 69 ----------ELGKSKAELDKAANEVGRSGADWEA------ARQRLSRLELENERLKHELERSQTTFGRTTL-------- 124 (237)
Q Consensus 69 ----------e~~~lq~elek~q~E~~rleaele~------~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------- 124 (237)
.+..+.+.+++....+..+.+++.. ...++..++.++..+..++...++.+.++-.
T Consensus 505 l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~E 584 (775)
T PF10174_consen 505 LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENE 584 (775)
T ss_pred HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544455555544432 3667777777777777777777777766543
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhhHHHH----------HHHHH--------------HhhHH
Q psy8596 125 --STSAELDRLQEKYDKTCADLRRAQAELRVVQAD-NERVRSEEKT----------MQEKV--------------EKSQG 177 (237)
Q Consensus 125 --~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~-~~~~~~~~~~----------~q~~l--------------e~~q~ 177 (237)
.....+..|+..+.+....+.........+... +.+.+.+.-. ....| ....-
T Consensus 585 K~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~ 664 (775)
T PF10174_consen 585 KNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHLEK 664 (775)
T ss_pred HHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 223344444444333333333333333322222 1111111000 00111 11112
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 178 EVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 178 ~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
.+..|-..++.++.+++.+.-++.++|+.+..-+..+-.+..|..+-.+++
T Consensus 665 qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~ 715 (775)
T PF10174_consen 665 QLEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEV 715 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777777777777777666666666666666655554
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.25 E-value=2.5e-08 Score=103.39 Aligned_cols=96 Identities=24% Similarity=0.336 Sum_probs=72.4
Q ss_pred ChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHH
Q psy8596 7 SSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEV 84 (237)
Q Consensus 7 ~Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~ 84 (237)
.+..++.+|.+.+.++++++..|+.+++.+++|+.+...+....+..+...+..+...+..+ .+.....++..+..++
T Consensus 181 ~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l 260 (1164)
T TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999998888888877 4444444444444444
Q ss_pred hhhhhhHHHHHHHHHHHH
Q psy8596 85 GRSGADWEAARQRLSRLE 102 (237)
Q Consensus 85 ~rleaele~~K~ei~qlE 102 (237)
..+...+......+..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~ 278 (1164)
T TIGR02169 261 SELEKRLEEIEQLLEELN 278 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444443333333
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.24 E-value=2.5e-10 Score=115.46 Aligned_cols=128 Identities=31% Similarity=0.457 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHH
Q psy8596 103 LENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRL 182 (237)
Q Consensus 103 kEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~ 182 (237)
.+++.....++.+.+.|.+ +.+.++.+-........+++..++.++..++.++++++.++++||++| +++++++||
T Consensus 17 ~ele~~~~~l~~~~~~i~~---fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL 92 (775)
T PF10174_consen 17 RELERKQSKLGSSMNSIKT---FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRL 92 (775)
T ss_pred HHHHHHHhHHHHHHHhHhc---ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 4444444444444444444 456777777777777777777777788888887777777777888888 788888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhh
Q psy8596 183 KAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATL 235 (237)
Q Consensus 183 ~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~ 235 (237)
+.++++++++.+.+.. ++++++.+.|+++|+|.++.|++.++..+|.+|..+
T Consensus 93 ~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~ 144 (775)
T PF10174_consen 93 QQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRI 144 (775)
T ss_pred HHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777 777777777777777777777777777777777655
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.01 E-value=1.5e-06 Score=89.80 Aligned_cols=113 Identities=28% Similarity=0.420 Sum_probs=78.4
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHh
Q psy8596 8 SEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVG 85 (237)
Q Consensus 8 Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~ 85 (237)
+...+..+..-|...+++.+.++...+...+|+.++..+..+.+..+...+..+...+..+ .+......+..+..++.
T Consensus 184 ~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1179)
T TIGR02168 184 TRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQ 263 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999998888888888888888777 44444444444444444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 86 RSGADWEAARQRLSRLELENERLKHELERSQTTFG 120 (237)
Q Consensus 86 rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~ 120 (237)
.+...+..+...+..+...+..++..+..+...+.
T Consensus 264 ~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~ 298 (1179)
T TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333
No 8
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.76 E-value=2.1e-05 Score=85.07 Aligned_cols=154 Identities=12% Similarity=0.183 Sum_probs=115.9
Q ss_pred ChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHH
Q psy8596 7 SSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLH--ERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAAN 82 (237)
Q Consensus 7 ~Te~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~--~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~ 82 (237)
.|+.+|.+|.|++.|++.++..|+.|+++|.+|..+..++. ..++..+...+..+...+... .+.....++..+..
T Consensus 304 ~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleelee 383 (1486)
T PRK04863 304 AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEA 383 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998733 466667777777777777766 66777777777777
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------------STSAELDRLQEKYDKTCADLRRAQA 149 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------------~~q~eL~~Lqek~ekl~~ELe~~q~ 149 (237)
++..++.++..++..+..+...+...+..+..+...+..... .+...+..+..+.......+..++.
T Consensus 384 EleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 384 RAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777766666554 3455666666666666666666666
Q ss_pred HHHHHHHhhHh
Q psy8596 150 ELRVVQADNER 160 (237)
Q Consensus 150 ~le~~q~~~~~ 160 (237)
++..+.+....
T Consensus 464 kL~~lea~leq 474 (1486)
T PRK04863 464 KLSVAQAAHSQ 474 (1486)
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 9
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.25 E-value=0.0038 Score=61.33 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=17.2
Q ss_pred cChHhHHhhHHHHHHHHHHHHHHHH
Q psy8596 6 CSSEGALSSLEEAIGDKEKQMNQLR 30 (237)
Q Consensus 6 ~~Te~nL~RveDil~Evekql~~L~ 30 (237)
|.+..|..+|+++-.||..--..|.
T Consensus 165 ~~a~~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 165 SAAEENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888766555544
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=98.23 E-value=0.0037 Score=64.11 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8596 16 EEAIGDKEKQMNQLREQRDRA 36 (237)
Q Consensus 16 eDil~Evekql~~L~~Qa~ka 36 (237)
.--|.++++.+..|....+..
T Consensus 458 ~~ei~~l~~~~~~l~~~~~~l 478 (880)
T PRK03918 458 TAELKRIEKELKEIEEKERKL 478 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 11
>KOG4809|consensus
Probab=98.20 E-value=0.0013 Score=64.30 Aligned_cols=199 Identities=23% Similarity=0.337 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH---------------------------------
Q psy8596 22 KEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--------------------------------- 68 (237)
Q Consensus 22 vekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--------------------------------- 68 (237)
+++.|+.|+.|+.+.+|.+..+++..+.+.+.++.+|..++.++.+.
T Consensus 311 ~er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 311 VERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 36999999999999999999999999999999999999999887765
Q ss_pred ----HhhhhHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------------
Q psy8596 69 ----ELGKSKAELDKAAN--EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLST---------------- 126 (237)
Q Consensus 69 ----e~~~lq~elek~q~--E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~---------------- 126 (237)
+|.++..++.++++ .-++..|++ -+.+..++++..+|++++..+++....+-..+
T Consensus 391 qkkEec~kme~qLkkAh~~~ddar~~pe~---~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiae 467 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHNIEDDARMNPEF---ADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 467 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 78888888888888 446777777 77889999999999999999998877643300
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy8596 127 -----SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201 (237)
Q Consensus 127 -----q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~ 201 (237)
-.+-.....-..+-..|....-..+..+.+.-+-..+..+.+| .++.-..+.+.+.+++.+-.-+..++.=+-
T Consensus 468 ler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq--~eel~~alektkQel~~tkarl~stqqsla 545 (654)
T KOG4809|consen 468 LERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ--IEELMNALEKTKQELDATKARLASTQQSLA 545 (654)
T ss_pred cCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH--HHHHHHHHHHHhhChhhhhhHHHHHHHHHH
Confidence 0111111222222223333333334444444443334455555 444444444444455444444444444444
Q ss_pred HhHHHHHHHHHHHhHhHHHHHHHH
Q psy8596 202 RTQGTLSRLLSERDKAVLEMDKSK 225 (237)
Q Consensus 202 ~~q~~~~~~~~e~d~~~~e~~~~~ 225 (237)
--..++.+|-.+|-++-.++=-++
T Consensus 546 Eke~HL~nLr~errk~Lee~lemK 569 (654)
T KOG4809|consen 546 EKEAHLANLRIERRKQLEEILEMK 569 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555666666655555444333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.19 E-value=0.0071 Score=64.59 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
+..+..+++..+.+...+...+.........+..++......+..+..+...+...+..
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444433
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=98.14 E-value=0.009 Score=61.50 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh-----hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVR-----SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 202 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~-----~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~ 202 (237)
..++.++.....+.........++...+...+.+. ...+.+..+++.....+..+.+.++.+...+..+...+..
T Consensus 606 ~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~ 685 (880)
T PRK02224 606 DEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA 685 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444443333333344444444444443331 2355555666666666666666666666656555555555
Q ss_pred hHHHHHH
Q psy8596 203 TQGTLSR 209 (237)
Q Consensus 203 ~q~~~~~ 209 (237)
..+.+..
T Consensus 686 ~~~~~e~ 692 (880)
T PRK02224 686 VENELEE 692 (880)
T ss_pred HHHHHHH
Confidence 5544443
No 14
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.12 E-value=0.0077 Score=59.23 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHh
Q psy8596 138 DKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKA 217 (237)
Q Consensus 138 ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~ 217 (237)
..+.+++.+...++..+.+.-.+..+....+...|....+++.....+.+.++.++..++.+++.+.+.+.-....+-.+
T Consensus 340 ~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 340 SSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333344444455555555555555555555556666666666666655555555555555555
Q ss_pred HHHHHHHH
Q psy8596 218 VLEMDKSK 225 (237)
Q Consensus 218 ~~e~~~~~ 225 (237)
..+++..+
T Consensus 420 ~ke~eaaK 427 (522)
T PF05701_consen 420 LKEAEAAK 427 (522)
T ss_pred HHHHHHHH
Confidence 55555444
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=98.09 E-value=0.013 Score=60.28 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 16 EEAIGDKEKQMNQLREQRDRADQ 38 (237)
Q Consensus 16 eDil~Evekql~~L~~Qa~kaer 38 (237)
.+.+......+..|+...+.+++
T Consensus 474 ~~~~~~~~~~~~~le~~l~~~~~ 496 (880)
T PRK02224 474 RERVEELEAELEDLEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443444444444443333
No 16
>KOG0250|consensus
Probab=98.07 E-value=0.013 Score=61.33 Aligned_cols=217 Identities=15% Similarity=0.260 Sum_probs=112.7
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHhhHHHHHHHHhhhhHH---HHHH--HhhhhHHHHHHH
Q psy8596 10 GALSSLEEAIGDKEKQMNQLREQRDRADQERQ----EERDLHERDIAEYKLKLHAYESE---VEEL--ELGKSKAELDKA 80 (237)
Q Consensus 10 ~nL~RveDil~Evekql~~L~~Qa~kaery~e----lk~e~~~lei~~~~~~~~~l~~e---l~~l--e~~~lq~elek~ 80 (237)
..|..-..+|+.++..+..++..-+.++--+. ++.-...+..-..++.|..+..- +... .+...+..+..+
T Consensus 221 ~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l 300 (1074)
T KOG0250|consen 221 ESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTL 300 (1074)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777777766666555444 23223333333344444444333 3333 566666666666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 81 ANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL----------STSAELDRLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 81 q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~----------~~q~eL~~Lqek~ekl~~ELe~~q~~ 150 (237)
+..+......+..++..+..++..+.....+...--.+|..+-. ....+....+....++......+...
T Consensus 301 ~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~ 380 (1074)
T KOG0250|consen 301 QEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQ 380 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665555555544432 11222223333333333333333333
Q ss_pred HHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 151 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 151 le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
+..+..+. ...+..+++........|+.+.|+++..+.+|++++.......-..+.+++.-..++-.++-.++.
T Consensus 381 I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 381 IADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIEN 454 (1074)
T ss_pred HHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333322 134555555555555555555555555556666666665555555555555555555555555444
Q ss_pred hh
Q psy8596 231 SQ 232 (237)
Q Consensus 231 ~q 232 (237)
-+
T Consensus 455 ~~ 456 (1074)
T KOG0250|consen 455 IS 456 (1074)
T ss_pred HH
Confidence 33
No 17
>KOG0996|consensus
Probab=98.03 E-value=0.003 Score=66.43 Aligned_cols=171 Identities=22% Similarity=0.300 Sum_probs=94.7
Q ss_pred HHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----
Q psy8596 52 AEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL----- 124 (237)
Q Consensus 52 ~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~----- 124 (237)
+..++++..+..++..+ +--+.+..+......+..+++++++.+.....++...+.++......+..|..+..
T Consensus 380 ~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 380 KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777 55566677777777777777777777777777777777777777777777776654
Q ss_pred --hh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy8596 125 --ST--------------SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 188 (237)
Q Consensus 125 --~~--------------q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~ 188 (237)
.+ ..++..++..+..+...+.....++..++++++- |-...+.....+.-+++.|..
T Consensus 460 ~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~-------L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 460 ERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDI-------LLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 22 3334444444444444444444444444444443 333333333344444444444
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 189 TQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 189 ~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
+.+..+.-++.+...-..+..+..|++.+..++.+++.+..
T Consensus 533 ~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 533 SSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444444444444444444444444433
No 18
>KOG0161|consensus
Probab=97.92 E-value=0.02 Score=63.67 Aligned_cols=145 Identities=16% Similarity=0.238 Sum_probs=101.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 87 SGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL----------STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 87 leaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~----------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
++..+..+...+...+..+....+....+.+.+...+. ......+.+...+.-+...+..+......+..
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333344444444555555555555555555554443 11222334444443444444555666666666
Q ss_pred hhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 157 DNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 157 ~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
++.+...++.+++.+++.-+..+..+++.....++.+.-+.++++.-....+++-+.+-+...+++.++++|+-+
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999999999999999999999999999999999999999999999999876
No 19
>KOG0996|consensus
Probab=97.90 E-value=0.028 Score=59.42 Aligned_cols=208 Identities=18% Similarity=0.297 Sum_probs=132.1
Q ss_pred HHHHHHHHHH-HHHHHHHHhhHhhHHHHHH--HHhhhhHHHHHH--HhhhhHHH-------HHHHHHHHhhhhhhHHHHH
Q psy8596 28 QLREQRDRAD-QERQEERDLHERDIAEYKL--KLHAYESEVEEL--ELGKSKAE-------LDKAANEVGRSGADWEAAR 95 (237)
Q Consensus 28 ~L~~Qa~kae-ry~elk~e~~~lei~~~~~--~~~~l~~el~~l--e~~~lq~e-------lek~q~E~~rleaele~~K 95 (237)
.+++-+.-+. ++..++.++..++-...++ .+..+.....++ ++.+.... ..++...+...+.+|..+.
T Consensus 374 ~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~ 453 (1293)
T KOG0996|consen 374 EIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE 453 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence 3444444444 5666666666666555433 233333444333 22222222 2233334555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhh
Q psy8596 96 QRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS 175 (237)
Q Consensus 96 ~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~ 175 (237)
......+.++...+..+..-...+..-....+.+|--+-.+.-...++++=++.++.-+-.--......+..+++.|..+
T Consensus 454 ~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~ 533 (1293)
T KOG0996|consen 454 ELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLAS 533 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444333333332223567777777777777777777777777777666666666777888888888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhh
Q psy8596 176 QGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATL 235 (237)
Q Consensus 176 q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~ 235 (237)
.....+.++.+-..-..+..+++++...-..+..+.++--.....+.+++.+++..-+.+
T Consensus 534 ~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~ 593 (1293)
T KOG0996|consen 534 SESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSL 593 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888887665543
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.83 E-value=0.072 Score=57.28 Aligned_cols=223 Identities=22% Similarity=0.347 Sum_probs=93.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH-------------HhhhhHHHHH
Q psy8596 12 LSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL-------------ELGKSKAELD 78 (237)
Q Consensus 12 L~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l-------------e~~~lq~ele 78 (237)
..+++..+......+..+..+..+...-......-....++.+...+......+..+ .+...-+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~ 355 (1201)
T PF12128_consen 276 EQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLP 355 (1201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhH
Confidence 344555555555555556555555555555444444455555555555555555444 1111122222
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHH
Q psy8596 79 KAANEVGRSGADWEAARQRLSRLELENERLKHELE--------RSQTTFGRTTLSTSAELDRLQEKYDKTCADLR-RAQA 149 (237)
Q Consensus 79 k~q~E~~rleaele~~K~ei~qlEkEle~~qeel~--------e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe-~~q~ 149 (237)
....++..+...+..+...+..++..+......+. .....+....................+..+++ ....
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~ 435 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQE 435 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333333333333333333333222221 11111111111122223333333333333333 2333
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHHhh------HHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 150 ELRVVQADNERVRSEEKTMQEKVEKS------QGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 150 ~le~~q~~~~~~~~~~~~~q~~le~~------q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
.+..++.+...+...+..+...+..+ ..+...+.+.++.++............++.....+...+|.+..+|..
T Consensus 436 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 515 (1201)
T PF12128_consen 436 QLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQ 515 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333333221 123334444455555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhh
Q psy8596 224 SKEELERSQAT 234 (237)
Q Consensus 224 ~~e~le~~q~~ 234 (237)
++.++...+.+
T Consensus 516 ~~~~~~~~~~~ 526 (1201)
T PF12128_consen 516 ARRELEELRAQ 526 (1201)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.80 E-value=0.041 Score=53.56 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
+..+...+....+.+..+..++...+.+++.+.......-..+.++..+++....+...+..+
T Consensus 339 i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 339 LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444444444444444333
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=97.72 E-value=0.078 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=13.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy8596 10 GALSSLEEAIGDKEKQMNQLREQRDR 35 (237)
Q Consensus 10 ~nL~RveDil~Evekql~~L~~Qa~k 35 (237)
..+..+++-|..+.+.++.|..-.+.
T Consensus 459 ~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 459 AELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 23
>KOG0250|consensus
Probab=97.71 E-value=0.069 Score=56.19 Aligned_cols=123 Identities=13% Similarity=0.257 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHhhhhHHHHHHHHHHhhH
Q psy8596 98 LSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAEL-RVVQADNERVRSEEKTMQEKVEKSQ 176 (237)
Q Consensus 98 i~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~l-e~~q~~~~~~~~~~~~~q~~le~~q 176 (237)
|...-+.+..++.+.+.+...++.+ .+.++.+....+.+.-.|..+.+.. +.+..++.+...++..|..+.++++
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~----~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREI----ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443 4556666666666666666666666 6666666666666667777777777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 177 GEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 177 ~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
+++.+|..++.....++....++.+...+..-.+..-...-..+|..+
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666666666666666666666666555555555555555443
No 24
>KOG0161|consensus
Probab=97.67 E-value=0.09 Score=58.70 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----hhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNE----RVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~----~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
+.+..+-.+++....+++..-.+-+....+.+ ++-|++..+++......+....+...|-+.-.++-.+..+++.-
T Consensus 1009 ~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1009 KSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444444444444444444455555555 45578888888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhh
Q psy8596 204 QGTLSRLLSERDKAVLEMDKSKEELERSQATL 235 (237)
Q Consensus 204 q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~ 235 (237)
++.+..+++.+...++.+..+.++|+..-.+.
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765544
No 25
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=0.1 Score=56.64 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHh--HHHHHHHHHHHHHhh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKA--VLEMDKSKEELERSQ 232 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~--~~e~~~~~e~le~~q 232 (237)
+..+..++....+.+..++.+++.....+..++.++...+..-..+...++.. ..++..+..++..-.
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666556666666666666666666666666666666655555555 555555555544433
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.56 E-value=0.16 Score=55.16 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=14.0
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 187 ENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 187 e~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
+..-.+++.+......+...+..+..+++.+.+++..
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.50 E-value=0.12 Score=51.11 Aligned_cols=124 Identities=17% Similarity=0.259 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 72 KSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQ 148 (237)
Q Consensus 72 ~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q 148 (237)
.+......+..+...+.........+|..++.++..+.....+....+..+.. ........++.++.....++....
T Consensus 196 el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~ 275 (546)
T PF07888_consen 196 ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEE 275 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444555555555555666666666655555544333222222211 111111122233333334444344
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Q psy8596 149 AELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES 195 (237)
Q Consensus 149 ~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~ 195 (237)
......+.+++.+..++..+++.+..|+.++.-|..+|-.+.+-.++
T Consensus 276 ~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDr 322 (546)
T PF07888_consen 276 TQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDR 322 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555444433333
No 28
>PRK11637 AmiB activator; Provisional
Probab=97.45 E-value=0.11 Score=49.48 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHH
Q psy8596 74 KAELDKAANEVGRSGADWEAAR 95 (237)
Q Consensus 74 q~elek~q~E~~rleaele~~K 95 (237)
+.++..+..++..++.++..++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 29
>KOG0964|consensus
Probab=97.43 E-value=0.22 Score=52.23 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=52.7
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH
Q psy8596 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL 68 (237)
Q Consensus 9 e~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l 68 (237)
.+-=.-|..++..|+--+..|++-.+-++.|.++...-+-++-.+|..-++.....+..+
T Consensus 183 ~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~l 242 (1200)
T KOG0964|consen 183 KQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERL 242 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 333446788999999999999999999999999999999999999998888888888877
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.41 E-value=0.16 Score=50.28 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=20.9
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLK 109 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~q 109 (237)
+...+..+.......+..++.++..+.......+..+..++
T Consensus 207 E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk 247 (546)
T PF07888_consen 207 ERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK 247 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555566555555555544444444443
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.40 E-value=0.082 Score=46.72 Aligned_cols=176 Identities=18% Similarity=0.298 Sum_probs=83.8
Q ss_pred hHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 50 DIAEYKLKLHAYESEVEEL--ELGKSKAELDKAAN-------EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFG 120 (237)
Q Consensus 50 ei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~-------E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~ 120 (237)
++.-+..++..+..++... .+......+..+.. ....+++.....-.+|..++..+......+..+...+.
T Consensus 37 e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~ 116 (237)
T PF00261_consen 37 EVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE 116 (237)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666555 33344444444333 33333444444444455555555555555555544444
Q ss_pred hhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Q psy8596 121 RTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 197 (237)
Q Consensus 121 ~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~ 197 (237)
...- .....|..+.++.+.+...+..+...+..+ ...+..+...-+++-.-...+...+......+...-
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~-------~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSV-------GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH-------HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 333444444444444444444444443333 333334444444443333444444444445555555
Q ss_pred HHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 198 EEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 198 ~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
..++-+...+.+|+...|....+|...+++....+
T Consensus 190 ~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 190 NRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666665555544444
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.30 E-value=0.2 Score=48.85 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8596 51 IAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHE 111 (237)
Q Consensus 51 i~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qee 111 (237)
+..+...+..+......+ ++..++.++..+...+......+..+...+...+..+......
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333 3333333333333333333333333343344444444333333
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.23 E-value=0.26 Score=48.94 Aligned_cols=108 Identities=15% Similarity=0.268 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAE----------LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 194 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~----------le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~ 194 (237)
.....+.++.+....+..+++++... ...+..++..+...+..+...+.........+..+++....+++
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666555 55555555555555555666666666666666666666666666
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 195 SMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 195 ~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
.+..+.......+..+.+.-..+...|..++..+...+
T Consensus 394 eie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 394 EIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666655444
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.22 E-value=0.13 Score=45.36 Aligned_cols=200 Identities=17% Similarity=0.299 Sum_probs=95.7
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHhh---------HHHHHHHHhhhhHHHHHH---------
Q psy8596 8 SEGALSSLEEAIGDKEKQMNQLREQRDRADQE-RQEERDLHERD---------IAEYKLKLHAYESEVEEL--------- 68 (237)
Q Consensus 8 Te~nL~RveDil~Evekql~~L~~Qa~kaery-~elk~e~~~le---------i~~~~~~~~~l~~el~~l--------- 68 (237)
....|....+-+...+..++....-+.+|+.. ..+...+.-++ +..+..+|..+.......
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666655555555432 22222222221 122333444444444443
Q ss_pred -------HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHH
Q psy8596 69 -------ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYD 138 (237)
Q Consensus 69 -------e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~e 138 (237)
.+..+..++..+..........+.....++..++..+.+.-..+..+...|..++. ...+.|..++..-.
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555555555555555555555555555555555555555555555555555443 33444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhH
Q psy8596 139 KTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAV 218 (237)
Q Consensus 139 kl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~ 218 (237)
++.........++..+... |..+-.-+.-.-.....-+..++.+.+++.........++.++|...
T Consensus 166 ~~~~re~~~e~~i~~L~~~--------------lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEK--------------LKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333 33333333333333333344445555555555555555555555555
Q ss_pred HHH
Q psy8596 219 LEM 221 (237)
Q Consensus 219 ~e~ 221 (237)
++|
T Consensus 232 ~el 234 (237)
T PF00261_consen 232 NEL 234 (237)
T ss_dssp HHC
T ss_pred HHh
Confidence 554
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.10 E-value=0.67 Score=51.16 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=24.8
Q ss_pred ChHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 7 SSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQE 42 (237)
Q Consensus 7 ~Te~nL~RveDil~Evekql~~L~~Qa~kaery~el 42 (237)
+.+.++..+.+.|.+.+..+..++.=..=.+-|+.+
T Consensus 227 ~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~l 262 (1486)
T PRK04863 227 GVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHL 262 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 356668888888888888888877655444555544
No 36
>PRK11637 AmiB activator; Provisional
Probab=97.07 E-value=0.3 Score=46.61 Aligned_cols=48 Identities=10% Similarity=0.220 Sum_probs=24.2
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQ 116 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q 116 (237)
++.....++..+..++..++.++..+..+|..++..+...+..+....
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555444443
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.97 E-value=0.75 Score=49.65 Aligned_cols=108 Identities=17% Similarity=0.310 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGT 206 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~ 206 (237)
...+..+......+..++..+...+..... ......+++.+...++.++.........+..++.+...++...+.+...
T Consensus 434 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 512 (1201)
T PF12128_consen 434 QEQLEELQEQREQLKSELAELKQQLKNPQY-TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEE 512 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444433322 2223345777777888888888777777788888877887777777777
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhhhh
Q psy8596 207 LSRLLSERDKAVLEMDKSKEELERSQATL 235 (237)
Q Consensus 207 ~~~~~~e~d~~~~e~~~~~e~le~~q~~~ 235 (237)
+..+..++..+...+..+..-|.-..++|
T Consensus 513 l~~~~~~~~~~~~~~~~l~~~L~p~~gSL 541 (1201)
T PF12128_consen 513 LRQARRELEELRAQIAELQRQLDPQKGSL 541 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCcH
Confidence 77777777777777777776665544443
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.96 E-value=0.47 Score=47.15 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=104.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh---hHHHHHHHHhhhhHHHHHH----Hh-hhhHHHHHHHH
Q psy8596 10 GALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHER---DIAEYKLKLHAYESEVEEL----EL-GKSKAELDKAA 81 (237)
Q Consensus 10 ~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~l---ei~~~~~~~~~l~~el~~l----e~-~~lq~elek~q 81 (237)
.+|..+++.+..+...|..|+..-.+.-.-+..-...... .+.-+......+..++..+ .+ ...-.....+.
T Consensus 275 l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~le 354 (569)
T PRK04778 275 LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLE 354 (569)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHH
Confidence 3455666666667777777777666654443333222211 1111222222222222222 00 00111122333
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 82 ~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
.++..+...+......+......++..+..+..+...+..... .....+..+......+...+......+..++...
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433334444334444444444444433333332 3344444444444444444444444444444444
Q ss_pred Hhh--hhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 159 ERV--RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 159 ~~~--~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
.+. -|=-+..-.-+..+...+.++..+|+..--.+..+..+|+.+...+..+..+.+....-...+
T Consensus 435 ~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~l 502 (569)
T PRK04778 435 EKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLT 502 (569)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 122233334445556777778888877777788888888888888888877777665554443
No 39
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.95 E-value=0.29 Score=45.49 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=8.5
Q ss_pred HhHhHHHHHHHHHHHHHhh
Q psy8596 214 RDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 214 ~d~~~~e~~~~~e~le~~q 232 (237)
+..+..++..++..+...+
T Consensus 248 l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 248 LTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 40
>KOG0933|consensus
Probab=96.83 E-value=0.86 Score=48.09 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=65.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
+..++.+++..+..++...+.+|.....-+-.....+...+. .-..++..+......+...++......+...
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333 3345555555555555555555555555555
Q ss_pred HhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 156 ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 156 ~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
-+.+.+..+.+.+...+..+.++...+-. ....+..++....+.+.....+.+.++++|...+..
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~-------~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEK-------QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 44554444444444444444444444444 344444444444444444444555555555444443
No 41
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.62 E-value=0.87 Score=45.29 Aligned_cols=211 Identities=13% Similarity=0.199 Sum_probs=123.5
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HhhHHHHHHHHhhhhHHHHHH----Hhhh-hHHHHHHH
Q psy8596 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLH---ERDIAEYKLKLHAYESEVEEL----ELGK-SKAELDKA 80 (237)
Q Consensus 9 e~nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~---~lei~~~~~~~~~l~~el~~l----e~~~-lq~elek~ 80 (237)
..+|..|+..+.++...|..|+..-++.-..+..-.... .-.+.-+....+.+..++..+ .+.. --.....+
T Consensus 270 ~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l 349 (560)
T PF06160_consen 270 NLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVREL 349 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 457788889999999999999988887554444333332 223344445555555555555 1111 11122223
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 81 ANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQAD 157 (237)
Q Consensus 81 q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~ 157 (237)
..++..+...+..+...+.....-++.....+......+...+. .....+..|......+...+......+..+.-.
T Consensus 350 ~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~ 429 (560)
T PF06160_consen 350 EKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRR 429 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333 446677777777777777777777777777776
Q ss_pred hHhhh--hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHH
Q psy8596 158 NERVR--SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVL 219 (237)
Q Consensus 158 ~~~~~--~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~ 219 (237)
.++.. |=-+..-.-+..+...+.++...|....-+++.+...+..+...+..|...-+....
T Consensus 430 lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 430 LEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66644 223334445666667777777777777777777777777777777777766655543
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=96.51 E-value=1.3 Score=46.02 Aligned_cols=37 Identities=11% Similarity=0.274 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~ 201 (237)
+..+...++...+.+.++.+.++....++..+..+++
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~ 719 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRIN 719 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333344444444444443333333333
No 43
>KOG0971|consensus
Probab=96.46 E-value=1.5 Score=46.05 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=45.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 79 KAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 79 k~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
++..+..-++.++-..+.+..+.-.--+++..++..+...|.=... +..++.+.||...+-+...++.+...++-+.
T Consensus 273 kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 273 KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655555555556666666666666655543 4455555555555555555555555555544
Q ss_pred HhhH
Q psy8596 156 ADNE 159 (237)
Q Consensus 156 ~~~~ 159 (237)
++.+
T Consensus 353 aEme 356 (1243)
T KOG0971|consen 353 AEME 356 (1243)
T ss_pred HHHH
Confidence 4443
No 44
>PRK09039 hypothetical protein; Validated
Probab=96.37 E-value=0.89 Score=42.59 Aligned_cols=135 Identities=10% Similarity=0.112 Sum_probs=62.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLST---SAELDRLQEKYDKTCADLR 145 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~---q~eL~~Lqek~ekl~~ELe 145 (237)
++.....++..+..+|..+-.-+.=-......++..+..++..+..+.+....++... ......++.++..+..+|.
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~ 126 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELD 126 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 5555666666666666665555555555555555666666555555554444443311 1112233334444444444
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 146 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 146 ~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
.........+.+...++.+++.|..+|...+..+.-.......++..++.+...+..+
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433333333333333333334444444333333
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.32 E-value=0.12 Score=42.73 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=22.4
Q ss_pred hHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHh
Q psy8596 158 NERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKA 217 (237)
Q Consensus 158 ~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~ 217 (237)
.+-+.+++..|..+|+-+|.....+-.+.||++..++.+.+++.-.-+...++..+++..
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 46
>PRK09039 hypothetical protein; Validated
Probab=96.28 E-value=0.48 Score=44.34 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHh
Q psy8596 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKA 217 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~ 217 (237)
...-++...+.++.-|.+.|...++.++....+..-++..+..+...++.+
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444455555555555555555
No 47
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.23 E-value=0.99 Score=41.65 Aligned_cols=196 Identities=16% Similarity=0.228 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH------HhhhhHHHHHHHHHHHhhhhhhH
Q psy8596 19 IGDKEKQMNQLREQRD-RADQERQEERDLHERDIAEYKLKLHAYESEVEEL------ELGKSKAELDKAANEVGRSGADW 91 (237)
Q Consensus 19 l~Evekql~~L~~Qa~-kaery~elk~e~~~lei~~~~~~~~~l~~el~~l------e~~~lq~elek~q~E~~rleael 91 (237)
|+=.+--|.+++.|-- +..+|.+ +|..++.+...|+..+.-- .+-.-..++.-+.++-..+.+.|
T Consensus 8 ia~LrlEidtik~q~qekE~ky~e--------diei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLE--------DIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHH
Confidence 3333444555555532 3334443 5556666666666555321 44455566676777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 92 EAARQRLSRLELENERLKHELERSQTTFGRTTL---------------------STSAELDRLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 92 e~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---------------------~~q~eL~~Lqek~ekl~~ELe~~q~~ 150 (237)
+..+.--..++.++++|+..|..+...-..++. .....+..+.++.+-+...|..++.+
T Consensus 80 e~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK 159 (305)
T PF14915_consen 80 EKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESK 159 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHH
Confidence 988988999999999998888877766665543 11223444555566666666666666
Q ss_pred HHHHHHhhHhhhh-------HHHHHHHHHHhhHHHHHHHHHHHHhhhhh-------HHHHHHHHHHhHHHHHHHHHHHhH
Q psy8596 151 LRVVQADNERVRS-------EEKTMQEKVEKSQGEVYRLKAKLENTQGE-------MESMKEEYERTQGTLSRLLSERDK 216 (237)
Q Consensus 151 le~~q~~~~~~~~-------~~~~~q~~le~~q~~~~~~~~~le~~q~~-------~~~~~~~~~~~q~~~~~~~~e~d~ 216 (237)
++.+...+-..+. -++.+|-.|..+|.+.-.|..-.-+.++. .+.+.+.+-..|+..--|+..+|.
T Consensus 160 ~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 160 FNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555442 47788888888888887776655555544 455556666666666666666777
Q ss_pred hHHHHH
Q psy8596 217 AVLEMD 222 (237)
Q Consensus 217 ~~~e~~ 222 (237)
|+....
T Consensus 240 A~~K~~ 245 (305)
T PF14915_consen 240 AHNKAD 245 (305)
T ss_pred HHHHHH
Confidence 766543
No 48
>KOG1029|consensus
Probab=96.22 E-value=1.9 Score=44.72 Aligned_cols=155 Identities=14% Similarity=0.217 Sum_probs=105.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 79 KAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 79 k~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
....+-.+-+..+-.++.+..++..+++-++..+..+-..|-.... ..-..+..+....+..-.++..++.+|..+|
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555666666677777777777666666665554 3456777777788888888888888888888
Q ss_pred HhhHhhhhHHHHHHHHHHhhHH-------HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 156 ADNERVRSEEKTMQEKVEKSQG-------EVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 156 ~~~~~~~~~~~~~q~~le~~q~-------~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
.-+.++--+-+-|-.+|...|. ....|.+-+.+-+.=..+++|.++..-....---.+.|.+-..|..+|+.+
T Consensus 500 ~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 500 EKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888877666666666655553 233444445555556677788888777777777788888888888888887
Q ss_pred HHhhh
Q psy8596 229 ERSQA 233 (237)
Q Consensus 229 e~~q~ 233 (237)
-..|.
T Consensus 580 ~~q~l 584 (1118)
T KOG1029|consen 580 NSQQL 584 (1118)
T ss_pred HHHHH
Confidence 65553
No 49
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.18 E-value=0.58 Score=38.58 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 72 KSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQT 117 (237)
Q Consensus 72 ~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~ 117 (237)
.+..+.+.+..-+..+++.+-.+..++..++.+|..++..+..+..
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~ 49 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEE 49 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555544443
No 50
>KOG0995|consensus
Probab=95.97 E-value=1.3 Score=44.16 Aligned_cols=69 Identities=13% Similarity=0.312 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy8596 90 DWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 162 (237)
Q Consensus 90 ele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~ 162 (237)
+.+.....+.-+++.+.+++.+++.+++....+ -........++..++.|+.....+++.++..++.+.
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~----~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQM----KSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556677778888888889988888777766 345555666677777777777777777777777544
No 51
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.87 E-value=1 Score=41.15 Aligned_cols=137 Identities=27% Similarity=0.393 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH----------------HhhhhHHHHHHH
Q psy8596 17 EAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL----------------ELGKSKAELDKA 80 (237)
Q Consensus 17 Dil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l----------------e~~~lq~elek~ 80 (237)
--|.|+|.|+..|+. ...-|....+.-+.-+..-+-++..-..++..| .-.++..++.--
T Consensus 18 qKIqelE~QldkLkK----E~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 18 QKIQELEQQLDKLKK----ERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 346677777777653 233334444444444444455555544444444 333344444445
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------------hhHHHHHHHHHHHHH
Q psy8596 81 ANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---------------------STSAELDRLQEKYDK 139 (237)
Q Consensus 81 q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---------------------~~q~eL~~Lqek~ek 139 (237)
..++.-++..+...|..|..++.++.+++.+|++.+........ ........|++++.+
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynk 173 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNK 173 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHH
Confidence 55889999999999999999999999999999999977664432 224788899999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy8596 140 TCADLRRAQAELRVVQAD 157 (237)
Q Consensus 140 l~~ELe~~q~~le~~q~~ 157 (237)
-..+.-+++.++..+++.
T Consensus 174 eveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 174 EVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHhhHHHHHHHHhcc
Confidence 999999999999998864
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.87 E-value=1.3 Score=39.79 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=9.5
Q ss_pred HHHHhHHHHHHHHHHHhHhHHH
Q psy8596 199 EYERTQGTLSRLLSERDKAVLE 220 (237)
Q Consensus 199 ~~~~~q~~~~~~~~e~d~~~~e 220 (237)
+...+......+..+++...++
T Consensus 150 e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 150 EVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.81 E-value=0.87 Score=37.51 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh---hHHHHHHHHHHhhHH
Q psy8596 104 ENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR---SEEKTMQEKVEKSQG 177 (237)
Q Consensus 104 Ele~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~---~~~~~~q~~le~~q~ 177 (237)
+.......+..+.+.+..++. ....+|..|+.+...+..+++.+...+..+...++..- +.+++|..++.-...
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 333333444444444444433 33566666666666666666666666666666555432 234455555555555
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 178 EVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 178 ~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
++.+.-+.|..+...+..+--..+-.--.++.|-.+++....-++.+..++.-+
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 555555555555555666666666666677777777777777777776666544
No 54
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.78 E-value=1.6 Score=40.44 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=11.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 207 LSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 207 ~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
+..+..++..+...+..++..++.
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555554443
No 55
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.75 E-value=0.58 Score=41.86 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 164 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 164 ~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
..+.|......+..+-.+|..++-..+..+.++....++--....+++.++-.++..+..++++|
T Consensus 62 ~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 62 EKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666677777777777777777777777777777777777777777777777665
No 56
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.61 E-value=1.3 Score=39.52 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGR 121 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~ 121 (237)
..++.+++.+..+.+..|.....++..
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~ 37 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEE 37 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 57
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.57 E-value=2.5 Score=42.53 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL------STSAELDRLQEKYDKTCA 142 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~------~~q~eL~~Lqek~ekl~~ 142 (237)
++..++.+++.+..++..+..++......+.++..++........++...+.-... .....+..|+.-.+....
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~ 408 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 66666667777777777777777777777777777777777777666665554432 223444444444444444
Q ss_pred HHHHHHHHHHHHH
Q psy8596 143 DLRRAQAELRVVQ 155 (237)
Q Consensus 143 ELe~~q~~le~~q 155 (237)
.+..+..+-+.++
T Consensus 409 rl~~L~~qWe~~R 421 (594)
T PF05667_consen 409 RLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 58
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.35 E-value=1.7 Score=37.69 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHH--------hhHHHHHHHHHHHHhhhhhHHHH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVE--------KSQGEVYRLKAKLENTQGEMESM 196 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le--------~~q~~~~~~~~~le~~q~~~~~~ 196 (237)
...++++.|.+.+-++......+...+....+++-++.+.+..|..-.+ ..+..+..+..+++.+-..+..|
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777777777777777777777777777777776666555554322 23333333333333333334444
Q ss_pred HHHHHHhHHHHHH----HHHHHhHhHHHHHHHHHHHHHhhh
Q psy8596 197 KEEYERTQGTLSR----LLSERDKAVLEMDKSKEELERSQA 233 (237)
Q Consensus 197 ~~~~~~~q~~~~~----~~~e~d~~~~e~~~~~e~le~~q~ 233 (237)
.-.++=+...+.+ -......+..++..+.+++....+
T Consensus 145 ek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 145 EKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333322 122233344445555555444443
No 59
>KOG4674|consensus
Probab=95.24 E-value=6.8 Score=44.10 Aligned_cols=70 Identities=14% Similarity=0.319 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhHHHHHHH----HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Q psy8596 165 EKTMQEKVEKSQGEVYRL----KAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQAT 234 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~----~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~ 234 (237)
++.+..++..--.++-.+ -..|+++++.++.+.-.++.+...+.-.++.++.+..++..+..+|..+-+.
T Consensus 814 l~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 814 LQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444444444333333333 2345788888888888888888888888888888888888888888766543
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.22 E-value=2.5 Score=39.05 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLK 183 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~ 183 (237)
..+|..+...+.....+|......+..++.++..+...++.+-.+....+.++..+.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444333333333333
No 61
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.04 E-value=1.8 Score=36.41 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=21.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~ 122 (237)
.+++.++......+..+..++..+...+......+...
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666555555444443
No 62
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.04 E-value=6.9 Score=43.04 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
..++..+...+..+...+......+...+...+.
T Consensus 332 ~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~ 365 (1353)
T TIGR02680 332 AEELERARADAEALQAAAADARQAIREAESRLEE 365 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443333
No 63
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.97 E-value=0.0067 Score=63.04 Aligned_cols=207 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH-----------------------Hh
Q psy8596 14 SLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL-----------------------EL 70 (237)
Q Consensus 14 RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l-----------------------e~ 70 (237)
+-.|.+.+...+|..|.....++++-+.-- ..++..+...+..+....... .+
T Consensus 128 kh~~~~~eL~eqle~lqk~k~~lEK~k~~l----~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~ 203 (859)
T PF01576_consen 128 KHQDAVAELNEQLEQLQKQKAKLEKEKSQL----EAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQR 203 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888887764321 112222222222222222222 23
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHH
Q psy8596 71 GKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRA 147 (237)
Q Consensus 71 ~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~ 147 (237)
..+.....++.++++.+...++.....+..+.+....+...+..+...+..-.. .+...+..++..++.+...++.-
T Consensus 204 ~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE 283 (859)
T PF01576_consen 204 NELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEE 283 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333333444444444444444444444333333333333333333221 33455555555555555555544
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHhhHHH----H----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHH
Q psy8596 148 QAELRVVQADNERVRSEEKTMQEKVEKSQGE----V----YRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVL 219 (237)
Q Consensus 148 q~~le~~q~~~~~~~~~~~~~q~~le~~q~~----~----~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~ 219 (237)
..-...++.++.++.+++..+..+++.--.. + -++..++..++..++.+.....++.-...+|+.|.+++..
T Consensus 284 ~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~ 363 (859)
T PF01576_consen 284 EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS 363 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555543222 1 2333444444444444444444444444455555555554
Q ss_pred HHHHH
Q psy8596 220 EMDKS 224 (237)
Q Consensus 220 e~~~~ 224 (237)
+|+..
T Consensus 364 eLe~~ 368 (859)
T PF01576_consen 364 ELEKA 368 (859)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44443
No 64
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.91 E-value=3.1 Score=38.44 Aligned_cols=182 Identities=17% Similarity=0.291 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH---------HhhhhHHHHHH
Q psy8596 13 SSLEEAIGDKEKQ----MNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL---------ELGKSKAELDK 79 (237)
Q Consensus 13 ~RveDil~Evekq----l~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l---------e~~~lq~elek 79 (237)
.+|.---.|+|+. |+.+++.-+-..+.-.+..+-=..-+.-|...+..|..+-..| .-..+..+++.
T Consensus 16 dtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES 95 (305)
T PF14915_consen 16 DTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIES 95 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Confidence 3333334444443 5778888888888888888777777777888888887777666 22333344443
Q ss_pred HHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-------H
Q psy8596 80 AAN-------EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADL-------R 145 (237)
Q Consensus 80 ~q~-------E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~EL-------e 145 (237)
+.+ +..+..+.-..+...|..-.-+|-+++..++--.+.+.....++.+.|..++.+...+..++ +
T Consensus 96 ~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr 175 (305)
T PF14915_consen 96 YRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALR 175 (305)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 22222222222233344444444555555544444444433344444444444444433333 2
Q ss_pred HHHHHHHHHHHhhHhhh---------------------hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Q psy8596 146 RAQAELRVVQADNERVR---------------------SEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 194 (237)
Q Consensus 146 ~~q~~le~~q~~~~~~~---------------------~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~ 194 (237)
...--++.+|-++.+.+ |.-+-+++.|-..|++-.=|...|+.|+.-.+
T Consensus 176 EKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 176 EKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444444444333 33445555666666666666666666654443
No 65
>KOG4674|consensus
Probab=94.87 E-value=8.6 Score=43.34 Aligned_cols=141 Identities=22% Similarity=0.263 Sum_probs=84.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH
Q psy8596 86 RSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEE 165 (237)
Q Consensus 86 rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~ 165 (237)
.+..-++..+.++..+..++.++...+-.+..++..+ +.+++..............++..+...+++++.-+.+++
T Consensus 126 ~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~----e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL 201 (1822)
T KOG4674|consen 126 QLMELLERQKAELEALESENKDLNDQLKSSTKTLSEL----EARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSREL 201 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334444444455555555555555555555555444 556666666666677777777777777777777766666
Q ss_pred HHHHHHHHhhHHH----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 166 KTMQEKVEKSQGE----VYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 166 ~~~q~~le~~q~~----~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
..-=++|...--+ +..|..+|..+......++..+.-.-..+.++.+-......+|-.++.-.+.
T Consensus 202 ~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s 270 (1822)
T KOG4674|consen 202 SKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAES 270 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6555555555555 6666666666666666666666666666666666555555555555544433
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.82 E-value=3.4 Score=38.37 Aligned_cols=71 Identities=28% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhH-----------HHHHHHHHHHHHhh
Q psy8596 164 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAV-----------LEMDKSKEELERSQ 232 (237)
Q Consensus 164 ~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~-----------~e~~~~~e~le~~q 232 (237)
++..+.++|.....++..+..+++..+.++..+...++..-...+.+..+...+. .|+..++.++..-|
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555554444444444444444444444444333 35555555555554
Q ss_pred hh
Q psy8596 233 AT 234 (237)
Q Consensus 233 ~~ 234 (237)
..
T Consensus 285 ~l 286 (312)
T smart00787 285 SL 286 (312)
T ss_pred HH
Confidence 43
No 67
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.81 E-value=5.7 Score=40.94 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=101.2
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------hH----
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLS-----------------TS---- 127 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~-----------------~q---- 127 (237)
++.+++.++..+..+=..+.+.++.....+..-..+++..+..++.+...+..+... ..
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~ 345 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGD 345 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccc
Confidence 888888888888887777777777777777777777777777777776665554430 00
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----------hhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 128 ------AELDRLQEKYDKTCADLRRAQAELRVVQADNER-----------VRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 128 ------~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~-----------~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
+-+.-++-++..+..++..+..+|+.+...... +.++++.|..++.........-+..+...+
T Consensus 346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE 425 (717)
T PF09730_consen 346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELE 425 (717)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 112345566666666666666666655443332 335566666666666555544455666667
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 191 GEMESMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 191 ~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
.++-.+..-...+++.+.-.|-++-.+..+|-.+
T Consensus 426 ~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqL 459 (717)
T PF09730_consen 426 KELRALSKLAGESQGSLNSAQDELVTFSEELAQL 459 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776666666554
No 68
>KOG0018|consensus
Probab=94.75 E-value=7.1 Score=41.75 Aligned_cols=151 Identities=18% Similarity=0.287 Sum_probs=91.1
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hhh------------
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGR------------TTL------------ 124 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~------------~e~------------ 124 (237)
.+.....++....+++....|.+..++-.+...+..+..+++.++.+...|-. +++
T Consensus 705 ~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ 784 (1141)
T KOG0018|consen 705 SLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRL 784 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHH
Confidence 55566667777777888888888888878888888888888888777755432 222
Q ss_pred -------hhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Q psy8596 125 -------STSAELD-----RLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGE 192 (237)
Q Consensus 125 -------~~q~eL~-----~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~ 192 (237)
.+..+|+ ..+.+.+++...+..++..++...-+-+.++..+.-+ +++++ +=+..-+..+.+
T Consensus 785 ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~------k~k~~~~~~~~e 857 (1141)
T KOG0018|consen 785 EFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK------KNKSKFEKKEDE 857 (1141)
T ss_pred HHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH------HHHHHHHHHHHH
Confidence 1112222 2344455555555555555555555555555555555 55554 114455566666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHH
Q psy8596 193 MESMKEEYERTQGTLSRLLSERDKAVLEMDKSKE 226 (237)
Q Consensus 193 ~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e 226 (237)
+...+..+..+-+.++.|..++....+.+++...
T Consensus 858 ~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~ 891 (1141)
T KOG0018|consen 858 INEVKKILRRLVKELTKLDKEITSIESKIERKES 891 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 6666666666666666666666666665555443
No 69
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.53 E-value=0.014 Score=60.58 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=22.8
Q ss_pred HhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------
Q psy8596 58 LHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL----------- 124 (237)
Q Consensus 58 ~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~----------- 124 (237)
+..+..++++. .+........++..+++++..++...+..+..++..-..+-..+-.++..|..++.
T Consensus 667 i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~ 746 (859)
T PF01576_consen 667 IQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIA 746 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 33444444444 66667777777888888888888888888887777777777777777777777665
Q ss_pred hhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Q psy8596 125 STSAELDRLQ-------EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 197 (237)
Q Consensus 125 ~~q~eL~~Lq-------ek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~ 197 (237)
.+..++..|+ .....+..-+++...+++.+..+.+.-+-...+++..+++++.-+-.++..++.+.....+..
T Consensus 747 kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~ 826 (859)
T PF01576_consen 747 KLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNL 826 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 2233333333 334445555677777888888888877777889999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 198 EEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 198 ~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
..|-++|-.+.-....-|.+..+|.++|-+.
T Consensus 827 ~k~Rk~q~elee~~e~~~~~e~~l~~lr~~~ 857 (859)
T PF01576_consen 827 AKYRKLQRELEEAEERAEAAERELNKLRAKS 857 (859)
T ss_dssp ----SSSSHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998888888888888998888653
No 70
>KOG0994|consensus
Probab=94.34 E-value=9.4 Score=41.45 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMD 222 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~ 222 (237)
+++|+.+..+..+++..+-..|-+. .-+|+..+..+.....+++.+..+|+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dL-------e~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDL-------ELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 4444444444444444433333332 23344444444444444444444443
No 71
>KOG0933|consensus
Probab=94.34 E-value=8.6 Score=40.98 Aligned_cols=210 Identities=18% Similarity=0.302 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy8596 21 DKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRL 98 (237)
Q Consensus 21 Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei 98 (237)
||.=-|.-|++-+..=-.|..+..++..++-.+..+.|-........+ ++......+..+...+.....+++.+..++
T Consensus 202 eI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~i 281 (1174)
T KOG0933|consen 202 EILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEI 281 (1174)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455556677777777777888888888888888877777666666555 444444444444444444444444444444
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh-----
Q psy8596 99 SRLEL--------ENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR----- 162 (237)
Q Consensus 99 ~qlEk--------Ele~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~----- 162 (237)
..++. ++..+-..+...+..+-+.+. ....-|+...++.+.+...+..+...+..=.+....+.
T Consensus 282 kei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~ 361 (1174)
T KOG0933|consen 282 KEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEK 361 (1174)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 44433 111122222222222222221 22333333333333333333333333322222222211
Q ss_pred ------------------------------hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q psy8596 163 ------------------------------SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212 (237)
Q Consensus 163 ------------------------------~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~ 212 (237)
++--.+..+|-.+-..+..++++.+.+.+.++.++.++.-..+...-..+
T Consensus 362 ~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~ 441 (1174)
T KOG0933|consen 362 LKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASA 441 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhH
Confidence 12345666666666677777777777777777777777777777666665
Q ss_pred HHhHhHHHHHHHHHHHHH
Q psy8596 213 ERDKAVLEMDKSKEELER 230 (237)
Q Consensus 213 e~d~~~~e~~~~~e~le~ 230 (237)
+...-.-+++..+.+.|.
T Consensus 442 ~~~~~~~~ld~~q~eve~ 459 (1174)
T KOG0933|consen 442 EYVKDIEELDALQNEVEK 459 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555544444443
No 72
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.25 E-value=4.6 Score=37.51 Aligned_cols=68 Identities=25% Similarity=0.283 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 89 ADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 89 aele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
..++.++..+..++.++..++.+...+...-..++. --..++..+..+...+..+|.+........|-
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999998877776664 11244444444444444444444444333333
No 73
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.15 E-value=2.2 Score=35.97 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q psy8596 163 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLL 211 (237)
Q Consensus 163 ~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~ 211 (237)
+......++++........+.++....+......+.........+.+++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQ 171 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333333333333333333333
No 74
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.12 E-value=4.3 Score=36.68 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=44.5
Q ss_pred HHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHH
Q psy8596 57 KLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELD 131 (237)
Q Consensus 57 ~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~ 131 (237)
.+..++..+..+ +...+..++.++..++..+...|+........++.++..+++.+.......-.+++ .+..++.
T Consensus 55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 55 ELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 333333333333 45555556666666666666666666666666666666666666655555444444 4444555
Q ss_pred HHHHHHH
Q psy8596 132 RLQEKYD 138 (237)
Q Consensus 132 ~Lqek~e 138 (237)
|+..-++
T Consensus 135 fl~~~he 141 (312)
T PF00038_consen 135 FLKQNHE 141 (312)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 5444333
No 75
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.08 E-value=4.7 Score=36.97 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQ-------TTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 82 ~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q-------~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
=+++-+++-+++.|.....-..++..++.+...+. ..-.++.- .....+.+++-.+..+...|+++..++
T Consensus 39 fQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 39 FQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555444444444444444433 22222221 334444444444444444444444444
Q ss_pred HHHHHhhHhh
Q psy8596 152 RVVQADNERV 161 (237)
Q Consensus 152 e~~q~~~~~~ 161 (237)
....++++++
T Consensus 119 kr~KsELErs 128 (307)
T PF10481_consen 119 KRCKSELERS 128 (307)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 76
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.02 E-value=6.2 Score=38.10 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=42.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH---HhHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 166 KTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE---RTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 166 ~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~---~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
+.|...+.....++.-+..++...+..++.++.++. ..+..+.+|+.+.+.+..-.+.+-.+++.++
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544 4566777888888888888887777777665
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.93 E-value=1.6 Score=38.25 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=36.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhhc
Q psy8596 183 KAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATLG 236 (237)
Q Consensus 183 ~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~~ 236 (237)
+.++..+......|..++.++...++.+++++|.+..+++.++....+--|..|
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444455577777777778888888888888888888887776655443
No 78
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.83 E-value=8.5 Score=39.04 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEK 166 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~ 166 (237)
..+..++.++..+...+......+..++.+++.+-++++
T Consensus 202 ~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lq 240 (617)
T PF15070_consen 202 KKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQ 240 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.75 E-value=7 Score=37.82 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8596 76 ELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTT 123 (237)
Q Consensus 76 elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e 123 (237)
+++.++.+++..+..+...++....++..|.....+++.+...|..+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555544444444444443
No 80
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.67 E-value=1.7 Score=40.32 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
..++..+......+..++..++.....+..++.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333
No 81
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.67 E-value=4.5 Score=35.40 Aligned_cols=95 Identities=25% Similarity=0.325 Sum_probs=65.9
Q ss_pred hhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy8596 49 RDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLST 126 (237)
Q Consensus 49 lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~ 126 (237)
=+|++++-.+...+.++... ++-.+..++..+.+.+...++.+..+...+.....+++.+..++.+..
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~---------- 79 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK---------- 79 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh----------
Confidence 36888888888888888766 777788888888888888888887777777777777777777777664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVV 154 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~ 154 (237)
++...+.++...+..++..+...+..+
T Consensus 80 -~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 80 -NEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred -CHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 334444555555555555555544443
No 82
>KOG0963|consensus
Probab=93.55 E-value=9.3 Score=38.60 Aligned_cols=141 Identities=18% Similarity=0.272 Sum_probs=84.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh---
Q psy8596 87 SGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS--- 163 (237)
Q Consensus 87 leaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~--- 163 (237)
+..........+..++..+..++..+..++.++..+.+....+..-.....-=+-.+++.++..+..++...+-+++
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444666666667777777666666666666555333333333333333334444444444444443333332
Q ss_pred ------------HHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 164 ------------EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 164 ------------~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
+..++-..|..--.++.+|-.+.++.++ .+..+.++....+..+-.+.....++++.++++|..
T Consensus 267 ~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~---S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 267 KANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA---SLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred hhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555566666666655554 567778888888999999999999999999988864
No 83
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.23 E-value=3.7 Score=33.05 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
+..+.+++...+.++..+..+.+.+...+......|+--
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q 99 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ 99 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 556666666666666666666666666666655555443
No 84
>KOG0977|consensus
Probab=92.93 E-value=11 Score=37.69 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhH-------hHHHHHHHHHHHHHhh
Q psy8596 191 GEMESMKEEYERTQGTLSRLLSERDK-------AVLEMDKSKEELERSQ 232 (237)
Q Consensus 191 ~~~~~~~~~~~~~q~~~~~~~~e~d~-------~~~e~~~~~e~le~~q 232 (237)
.++..|+.+..+....+.++.+.+|+ ++..++.|.++|.+..
T Consensus 169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444443 2345555666665543
No 85
>KOG0978|consensus
Probab=92.90 E-value=13 Score=38.31 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=19.6
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 187 ENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 187 e~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
+.+.+.++.++..+..+-..+.-...-+-.+..|+.+++-+|++.
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333344444455555555555544
No 86
>KOG1962|consensus
Probab=92.39 E-value=1.1 Score=39.56 Aligned_cols=62 Identities=32% Similarity=0.413 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q psy8596 147 AQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLS 208 (237)
Q Consensus 147 ~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~ 208 (237)
+.++.....++.+.+.++++..+.+|++++++..-|.+..+.-+-+-+++-+++.+.|..+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444555556666666666777777777777777777777777777777776666666543
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.31 E-value=14 Score=37.46 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q psy8596 163 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSE 213 (237)
Q Consensus 163 ~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e 213 (237)
..+..+.+.++---.++..++......-++++++...|...-+...-|+.+
T Consensus 209 ~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 209 EKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433333444444444433344444444444444444444433
No 88
>KOG0243|consensus
Probab=92.10 E-value=14 Score=39.66 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhH
Q psy8596 180 YRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAV 218 (237)
Q Consensus 180 ~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~ 218 (237)
-.++..++.++.++..+-.++++.-..-...+.=.+.+.
T Consensus 535 ~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~ 573 (1041)
T KOG0243|consen 535 TKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQ 573 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHh
Confidence 334444444444444444444443333333333333333
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.80 E-value=8 Score=33.49 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=17.9
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 159 ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 159 ~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
+.+...+..+..+++.+-..+.-|...++-+.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666666555443
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.73 E-value=4.9 Score=32.30 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy8596 163 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 200 (237)
Q Consensus 163 ~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~ 200 (237)
.++..|+.+.+-+..=+-....+.|.-+.|+.-+++=|
T Consensus 75 ~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 75 QELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455555555555444
No 91
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.61 E-value=11 Score=34.80 Aligned_cols=106 Identities=17% Similarity=0.254 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGT 206 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~ 206 (237)
..-+..+...+..+..++..++......-.- -..++..+..+|.....++..+++++...+.++..+...++..-..
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~---D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQLVEEIESC---DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555554444443321100 0123444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHhH-----------hHHHHHHHHHHHHHhhhhh
Q psy8596 207 LSRLLSERDK-----------AVLEMDKSKEELERSQATL 235 (237)
Q Consensus 207 ~~~~~~e~d~-----------~~~e~~~~~e~le~~q~~~ 235 (237)
.+.+..+... ...|+-.++.++..-|...
T Consensus 253 k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 253 KQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4444433333 3456667777766655543
No 92
>KOG0963|consensus
Probab=91.36 E-value=18 Score=36.65 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 36 ADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGR-SGADWEAARQRLSRLELENERLKHEL 112 (237)
Q Consensus 36 aery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~r-leaele~~K~ei~qlEkEle~~qeel 112 (237)
.+.|+..+.-.+.-++.+.-..|...+.-+..+ +|..+..++......... ..+++......+..++.++..+..++
T Consensus 222 ~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di 301 (629)
T KOG0963|consen 222 LKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDI 301 (629)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 333433444444444444444444444444444 444444444433221111 12445555555555555555555555
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy8596 113 ERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 162 (237)
Q Consensus 113 ~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~ 162 (237)
..+++.+.......-..+..+...+....++|+.+..+++.. +|-+.|.
T Consensus 302 ~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK 350 (629)
T KOG0963|consen 302 ERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIK 350 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHH
Confidence 555555544444444555555555555555555555554443 4444433
No 93
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.33 E-value=2.6 Score=36.07 Aligned_cols=7 Identities=0% Similarity=-0.087 Sum_probs=0.0
Q ss_pred hhhhhhH
Q psy8596 85 GRSGADW 91 (237)
Q Consensus 85 ~rleael 91 (237)
..+...+
T Consensus 105 ~~l~~~~ 111 (194)
T PF08614_consen 105 QELEKEL 111 (194)
T ss_dssp -------
T ss_pred chhhhhH
Confidence 3333333
No 94
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.24 E-value=15 Score=35.42 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=15.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhhhh
Q psy8596 209 RLLSERDKAVLEMDKSKEELERSQATL 235 (237)
Q Consensus 209 ~~~~e~d~~~~e~~~~~e~le~~q~~~ 235 (237)
....+++.+..++..++..+...+..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665555443
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.15 E-value=6.8 Score=31.47 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 78 DKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL------STSAELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 78 ek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~------~~q~eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
+.+++.+.+++.++..++.++..++..=.....++-.+......... .+..++..++.++.-+..=+=......
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~v 98 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34444444444444444444444444444444444444444333322 333444444444444444444444444
Q ss_pred HHHHHhhH
Q psy8596 152 RVVQADNE 159 (237)
Q Consensus 152 e~~q~~~~ 159 (237)
+.+++|..
T Consensus 99 eEL~~Dv~ 106 (120)
T PF12325_consen 99 EELRADVQ 106 (120)
T ss_pred HHHHHHHH
Confidence 44444443
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.93 E-value=7.4 Score=36.02 Aligned_cols=43 Identities=16% Similarity=0.333 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQ 169 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q 169 (237)
...+..+......+..+...+..++..+..+.+.+..++..++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665555555555555554444333333
No 97
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.83 E-value=11 Score=33.12 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy8596 70 LGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLK 109 (237)
Q Consensus 70 ~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~q 109 (237)
|.-++.++..++.+++....+|-.++-.+......+....
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~ 51 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE 51 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Confidence 3344445555555555444444444443333333333333
No 98
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.75 E-value=14 Score=34.93 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
+.++.++..-...+...+..+...++++......-++.+..+..-+...++.+-.+....+..+.
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls 283 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELS 283 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544444444444444444444444444444444444444
No 99
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.70 E-value=9 Score=32.09 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHH
Q psy8596 90 DWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQ 169 (237)
Q Consensus 90 ele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q 169 (237)
|++.++.+...+-..|+....++..+...++.. ..-|.+..+++.-+..++......+......+.+++.++....
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~----v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKT----VQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333332 2334444444444444444444444444444444444444444
Q ss_pred HHHHhhHHHHHHHHH
Q psy8596 170 EKVEKSQGEVYRLKA 184 (237)
Q Consensus 170 ~~le~~q~~~~~~~~ 184 (237)
...++......++..
T Consensus 119 ~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 119 KERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 100
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.62 E-value=4.1 Score=36.45 Aligned_cols=63 Identities=29% Similarity=0.463 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
..++.++...+.+-.++++++.+.+..|-.+.++.+++.+|-+.+.+.-|++|+|.+.++..-
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 456667777788888888888888888888888999999999999999999999988775543
No 101
>KOG0978|consensus
Probab=90.55 E-value=23 Score=36.49 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGT 206 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~ 206 (237)
..++..++...-.+..++...+..++......-.+-..+..||.+++++.+...+++...-.+-..++-......+++..
T Consensus 530 eeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 530 EEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333334455555555555555544444444444444444443344443
Q ss_pred HHHHH
Q psy8596 207 LSRLL 211 (237)
Q Consensus 207 ~~~~~ 211 (237)
+.++.
T Consensus 610 ~e~L~ 614 (698)
T KOG0978|consen 610 LERLK 614 (698)
T ss_pred HHHHH
Confidence 33333
No 102
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.32 E-value=9.2 Score=31.58 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 162 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~ 162 (237)
..+..++.....+..++..+...+..+.++.+.+-
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555444333
No 103
>PF13514 AAA_27: AAA domain
Probab=90.31 E-value=29 Score=37.32 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERV 161 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~ 161 (237)
..++..+..+...+...+...+.++..++...+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555666666666666555555555543
No 104
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.17 E-value=6.1 Score=34.54 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8596 97 RLSRLELENERLKHELERS 115 (237)
Q Consensus 97 ei~qlEkEle~~qeel~e~ 115 (237)
++-.+++++...+..+..+
T Consensus 94 rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 105
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.14 E-value=19 Score=34.83 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 90 DWEAARQRLSRLELENERLKHELERSQTTF 119 (237)
Q Consensus 90 ele~~K~ei~qlEkEle~~qeel~e~q~~i 119 (237)
+++..+.+-...+.++...+..+-+.+..+
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~l 139 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQEL 139 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 106
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.08 E-value=3.3 Score=35.45 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGT 206 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~ 206 (237)
..+|-.+...+..+...+......+..+.+.+..+...+..+...+..-..-.+-++-++-..+.+...+.+++.+++..
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455544555444444444444444444444444555555555555555555555544444
Q ss_pred HHHH
Q psy8596 207 LSRL 210 (237)
Q Consensus 207 ~~~~ 210 (237)
...|
T Consensus 174 n~~L 177 (194)
T PF08614_consen 174 NREL 177 (194)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 107
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.03 E-value=17 Score=34.07 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=98.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
+..+.-.+..++..+++++..+..++--++..+.+............ .-+..+.+-.+|+.+..+...++.++.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~------~~~ere~lV~qLEk~~~q~~qLe~d~q 150 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARH------FPHEREDLVEQLEKLREQIEQLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccc------cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666677777777777777776666655544433210 005556666677777777777777776
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------hhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 160 RVRSEEKTMQEKVEKSQGEVYRLKAKLEN-------TQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 160 ~~~~~~~~~q~~le~~q~~~~~~~~~le~-------~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
-+.++.+-+-.+-+--..-+.||-.+|-. -=.|++.|=.+..-.+..+..+|.|.+-+.+=+-+-+.=||
T Consensus 151 s~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 151 SLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666632 23579999999999999999999999999999988888777
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.61 E-value=16 Score=33.30 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMES 195 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~ 195 (237)
+..-+..++.-+..+.-++.++|..+-+|+.
T Consensus 160 Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~ 190 (265)
T COG3883 160 LEEKQAALEDKLETLVALQNELETQLNSLNS 190 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 109
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.48 E-value=38 Score=37.45 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy8596 14 SLEEAIGDKEKQMNQLREQR 33 (237)
Q Consensus 14 RveDil~Evekql~~L~~Qa 33 (237)
.|+.-|.++...+..+..++
T Consensus 746 el~~~IaeL~~~i~~l~~~l 765 (1353)
T TIGR02680 746 ELDARLAAVDDELAELAREL 765 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 110
>KOG0243|consensus
Probab=89.33 E-value=34 Score=36.73 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8596 98 LSRLELENERLKHELERSQ 116 (237)
Q Consensus 98 i~qlEkEle~~qeel~e~q 116 (237)
|.+++.++..+.+.+..++
T Consensus 450 ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 111
>KOG4673|consensus
Probab=89.26 E-value=29 Score=35.85 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHhh--HHHHHHHHhhhhHHHHHH-HhhhhHHHHHHHHH-HH
Q psy8596 17 EAIGDKEKQMNQL--------REQRDRADQERQEERDLHERD--IAEYKLKLHAYESEVEEL-ELGKSKAELDKAAN-EV 84 (237)
Q Consensus 17 Dil~Evekql~~L--------~~Qa~kaery~elk~e~~~le--i~~~~~~~~~l~~el~~l-e~~~lq~elek~q~-E~ 84 (237)
|.|.|+.-+|..| +.|+-.-.--+++....++-+ ....+.++..|+.+...+ .+-.-+...++.+- -|
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888888888887 445555666677777777777 555666788888888877 33333333333322 23
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAELDRLQEKYDKTCADLRRAQAELRVVQAD 157 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~ 157 (237)
.+..+++...+...+....-+..+...+-..++.+..+-. ..+.++..-+.-+....++|+..-.+.+..-+.
T Consensus 526 ~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 526 EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333333333333333333332222 334555555566666666666665555555444
Q ss_pred hHh-hhhHHHHHHHHHHhhHHHHHH
Q psy8596 158 NER-VRSEEKTMQEKVEKSQGEVYR 181 (237)
Q Consensus 158 ~~~-~~~~~~~~q~~le~~q~~~~~ 181 (237)
.+. .++++..||-.|.-+.--.+-
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 566677777666655444433
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.08 E-value=19 Score=33.47 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=81.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------------hhHHHHHHHHHHHHHHHH
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-----------------STSAELDRLQEKYDKTCA 142 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-----------------~~q~eL~~Lqek~ekl~~ 142 (237)
+......++..+......+.++..++...-+-+.-+...-..... ...-.++.|+.|...+..
T Consensus 95 L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEe 174 (306)
T PF04849_consen 95 LSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEE 174 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHH
Confidence 344566677777777777777777776544443333211111110 011234444444444444
Q ss_pred HHHHHHHHHHHHH-------------------------HhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Q psy8596 143 DLRRAQAELRVVQ-------------------------ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMK 197 (237)
Q Consensus 143 ELe~~q~~le~~q-------------------------~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~ 197 (237)
|-..+..+...+. ++...+..++..-.+.....|.++.+|.+++=..|.-...+-
T Consensus 175 EN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 175 ENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred HHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433333 333334445566666666777777777777777776666666
Q ss_pred HHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 198 EEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 198 ~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
.+-+..+..+.-.+.=-....+||..++++-.-
T Consensus 255 ~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 255 AENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555455555666666665443
No 113
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.03 E-value=10 Score=30.39 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy8596 102 ELENERLKHELERSQTTFGR 121 (237)
Q Consensus 102 EkEle~~qeel~e~q~~i~~ 121 (237)
-..|..++.++..+...|..
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 114
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.02 E-value=0.12 Score=52.63 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhHHHHHH------------HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 50 DIAEYKLKLHAYESEVEEL------------ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELE 113 (237)
Q Consensus 50 ei~~~~~~~~~l~~el~~l------------e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~ 113 (237)
++..|+.++..|.++...+ .......++..+..++..++..+.....++..++-++..++..+.
T Consensus 326 d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 326 DLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444 333344444444445555555554444444444444444444443
No 115
>KOG0979|consensus
Probab=88.92 E-value=36 Score=36.44 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=27.0
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQ 116 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q 116 (237)
-.+.++.++..+..++-.+..-.+.+..+.......++.+...++.+-
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~ 303 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEAL 303 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555566666665555554
No 116
>KOG4643|consensus
Probab=88.85 E-value=37 Score=36.48 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhH----------HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Q psy8596 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSE----------EKTMQEKVEKSQGEVYRLKAKLENTQGEMES 195 (237)
Q Consensus 126 ~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~----------~~~~q~~le~~q~~~~~~~~~le~~q~~~~~ 195 (237)
++.....|++++..+...+..++...+.++.+++++..+ ...+-+.+++.-+-..++.++.+....+...
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554422 2223333344444444444555555555444
Q ss_pred HHHHHHHhHHHHHHHHHHHh
Q psy8596 196 MKEEYERTQGTLSRLLSERD 215 (237)
Q Consensus 196 ~~~~~~~~q~~~~~~~~e~d 215 (237)
+..-+..+.-.+.|++..-+
T Consensus 493 lnk~L~~r~~elsrl~a~~~ 512 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKN 512 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 117
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.61 E-value=4.7 Score=36.10 Aligned_cols=66 Identities=27% Similarity=0.265 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 164 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 164 ~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
...-+.++|+..+.+-.-|-.+++..+++.+.+++++++......+|-..++..-.++.+++.+++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 344555556666666666666666666666666666666666666666666666666666665543
No 118
>KOG0971|consensus
Probab=88.52 E-value=38 Score=36.15 Aligned_cols=124 Identities=22% Similarity=0.339 Sum_probs=55.7
Q ss_pred hHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy8596 50 DIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADW-EAARQRLSRLELENERLKHELERSQTTFGRTTLST 126 (237)
Q Consensus 50 ei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleael-e~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~ 126 (237)
+...+-.+-..|+-+++.+ .++.+..+++-+..++.....+- -.-..+|.++|.-+.++++.+-++. .+...-
T Consensus 319 dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR----DlsA~e 394 (1243)
T KOG0971|consen 319 DKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR----DLSASE 394 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH----hcchHH
Confidence 3344444444444444433 33333333333333333333332 2234567777777777777665543 222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQG 177 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~ 177 (237)
-.....+...+++...|+..+....+.+....+..-+-+.-|+++++-|.|
T Consensus 395 k~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG 445 (1243)
T KOG0971|consen 395 KQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG 445 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122333444444444444444444444444444444444445555544444
No 119
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=88.44 E-value=28 Score=34.65 Aligned_cols=129 Identities=12% Similarity=0.248 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHH
Q psy8596 102 ELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGE 178 (237)
Q Consensus 102 EkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~ 178 (237)
...+..+...+..+...+..... .....+..+...++.+..+.......+..+..+-.+.+..+..+...|-.....
T Consensus 350 ~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~ 429 (560)
T PF06160_consen 350 EKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRR 429 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443332 334555555555555555555555555555544444444444444444333333
Q ss_pred H---------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 179 V---------YRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 179 ~---------~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
+ .....-+..+...++.+.+.+.+..-.+..+...++.+.+.++.+.++...
T Consensus 430 lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~ 490 (560)
T PF06160_consen 430 LEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEE 490 (560)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222234466668888889999999999999999999999999998887654
No 120
>PF13514 AAA_27: AAA domain
Probab=88.33 E-value=40 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 13 SSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHER 49 (237)
Q Consensus 13 ~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~l 49 (237)
..|-+++..+.+.+..|+....+--.+.....+|.++
T Consensus 126 ~~l~~~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~ 162 (1111)
T PF13514_consen 126 GSLSQVLKQLDKEADELFKPRGRKPEINQALKELKEL 162 (1111)
T ss_pred ccHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHH
Confidence 3466666677777777776655444444444444333
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.82 E-value=37 Score=35.20 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=76.5
Q ss_pred hHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy8596 50 DIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTS 127 (237)
Q Consensus 50 ei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q 127 (237)
++.-++..++..+.+.+.+ ....+......+..+..++-.++-++|.+=.++-.+++.+-++-..++..+
T Consensus 42 elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv-------- 113 (717)
T PF09730_consen 42 ELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV-------- 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------
Confidence 4444555555555555555 444444444445555555555565556555555555555555555555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh--H--HHHHHHHHHhhHHHHH---HHHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS--E--EKTMQEKVEKSQGEVY---RLKAKLE 187 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~--~--~~~~q~~le~~q~~~~---~~~~~le 187 (237)
.-|...|=..+.+..+|.++..++..++++++.+.. + -.+|-+-|+-.+++.. -|+++|.
T Consensus 114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788999999999999999999886331 0 2245555666665553 3445553
No 122
>PF15294 Leu_zip: Leucine zipper
Probab=87.41 E-value=23 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHH-----HHH----------H-HHHHHH-HHHHHHHhhHhhHHHHHHHHhhh
Q psy8596 15 LEEAIGDKEKQMNQ-----LRE----------Q-RDRADQ-ERQEERDLHERDIAEYKLKLHAY 61 (237)
Q Consensus 15 veDil~Evekql~~-----L~~----------Q-a~kaer-y~elk~e~~~lei~~~~~~~~~l 61 (237)
|.++|..+.-++.+ |.+ | -..|++ |..+..++.+++...+...+..+
T Consensus 35 V~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~ 98 (278)
T PF15294_consen 35 VTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEF 98 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 55666666666665 211 1 223333 34555666666666555555544
No 123
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.28 E-value=24 Score=32.59 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSER 214 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~ 214 (237)
...+..+.+++..-+-.|..+......+++.+..+.++.++---.||.+|
T Consensus 260 ~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 260 NQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33555666666666666666666666666666666666666655555543
No 124
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=87.20 E-value=22 Score=32.06 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhh
Q psy8596 221 MDKSKEELERSQA 233 (237)
Q Consensus 221 ~~~~~e~le~~q~ 233 (237)
+...+..++..+.
T Consensus 188 i~~~~~~l~~a~~ 200 (334)
T TIGR00998 188 VQEAKERLKTAWL 200 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 125
>KOG0964|consensus
Probab=87.19 E-value=47 Score=35.72 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=49.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHH-----HHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAEL-----DRLQEK 136 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL-----~~Lqek 136 (237)
.+.+...++..-...+..+-.++..++.++..+...+......|+.+...+...+. .+..+| -.-.+.
T Consensus 707 ~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~ 786 (1200)
T KOG0964|consen 707 NMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELER 786 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHH
Confidence 33344444444444455555555555555555666666666666666655555543 111111 123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 137 YDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 137 ~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
+.++..+|..+..++..+..+.-.
T Consensus 787 l~kLn~eI~~l~~kl~~~~~er~~ 810 (1200)
T KOG0964|consen 787 LSKLNKEINKLSVKLRALREERID 810 (1200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766665544
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.08 E-value=15 Score=29.90 Aligned_cols=95 Identities=22% Similarity=0.381 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH-
Q psy8596 134 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS- 212 (237)
Q Consensus 134 qek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~- 212 (237)
-...+.+...+.++...+..+.....++...+..++.++..++.....+.+.+...+.-+...++++.++.+.++...+
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555556655666666666777777777777777777777777788888777776665543
Q ss_pred ---HHhHhHHHHHHHHHHH
Q psy8596 213 ---ERDKAVLEMDKSKEEL 228 (237)
Q Consensus 213 ---e~d~~~~e~~~~~e~l 228 (237)
|.-+---|++++++.|
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344555555544
No 127
>KOG0979|consensus
Probab=86.59 E-value=50 Score=35.45 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 179 VYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 179 ~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
+..+-.+.+....+++.++...++.|..+.+.-+..+.++.+|..
T Consensus 313 ~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 313 LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344445555555666666666666666666666666666666543
No 128
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.45 E-value=35 Score=33.60 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 100 RLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQA 149 (237)
Q Consensus 100 qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~ 149 (237)
++++-|...-.++++++.-.|.++..+.+-|+.|....+.-..++--++.
T Consensus 450 Emdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 450 EMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443344444444444333333333333
No 129
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.41 E-value=22 Score=33.72 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQA 149 (237)
Q Consensus 82 ~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~ 149 (237)
-|++|.-|.+ |..+....+.+..+=..+..+...|...-......|..+.....+....|..-+.
T Consensus 198 lEvERV~PqL---Kv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 198 LEVERVLPQL---KVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred HHHHHHhhhh---eeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666 5555555566666666666666666655445555666655555555444444333
No 130
>KOG1853|consensus
Probab=86.18 E-value=27 Score=31.96 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHH
Q psy8596 100 RLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEV 179 (237)
Q Consensus 100 qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~ 179 (237)
.+-+-...+++++++++..-+.++..+. ++|..+..+.+.+++++.++.++...+.++++-+-.++
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~Eaele--------------sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~ 89 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELE--------------SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF 89 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777755555443333 34444555555666666666666677777777666666
Q ss_pred HHHHHHH
Q psy8596 180 YRLKAKL 186 (237)
Q Consensus 180 ~~~~~~l 186 (237)
|+--..|
T Consensus 90 y~q~s~L 96 (333)
T KOG1853|consen 90 YQQESQL 96 (333)
T ss_pred HHHHHHH
Confidence 6655444
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.14 E-value=48 Score=34.85 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 172 VEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 172 le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
+.........+...++.....++.+...+.....
T Consensus 405 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~ 438 (908)
T COG0419 405 LEEIQEELEELEKELEELERELEELEEEIKKLEE 438 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444443333333
No 132
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=85.98 E-value=22 Score=30.75 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGT 206 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~ 206 (237)
..++...+.-.......|...+.-......-....+.++..|..-|..+++-+.....=...+|.++..-..=++.++..
T Consensus 73 e~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~R 152 (188)
T PF05335_consen 73 EQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRR 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555666666666666666666666677777777666667777777
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 207 LSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 207 ~~~~~~e~d~~~~e~~~~~e~le 229 (237)
+..|...+..+..++++|+.--.
T Consensus 153 ve~L~~QL~~Ar~D~~~tk~aA~ 175 (188)
T PF05335_consen 153 VEELQRQLQAARADYEKTKKAAY 175 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776443
No 133
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.84 E-value=46 Score=34.34 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=81.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHH-------
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-STSAELDRLQEKYDKT------- 140 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-~~q~eL~~Lqek~ekl------- 140 (237)
++..++.+.+.+++.+..+....+.-|.-+..+|+.|..-+..-..+.+.+..-.. ....+ +...+.
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee-----~~aar~~~~~~~~ 535 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEE-----EKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----Hhhhhccccchhc
Confidence 56666666666666666666666666777777777666666665555555544221 00000 000000
Q ss_pred -HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHH-------HHHhhhhhHHHHHHH---HHHhHHHHHH
Q psy8596 141 -CADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKA-------KLENTQGEMESMKEE---YERTQGTLSR 209 (237)
Q Consensus 141 -~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~-------~le~~q~~~~~~~~~---~~~~q~~~~~ 209 (237)
.+-=+....+...+-.+..+++.|+....+.+-....++..+.. +.|..-+-|..++|+ ||++=+.=.|
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 00011122333344444444555555555555555554433322 222223344455655 3444444456
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhhhhhc
Q psy8596 210 LLSERDKAVLEMDKSKEELERSQATLG 236 (237)
Q Consensus 210 ~~~e~d~~~~e~~~~~e~le~~q~~~~ 236 (237)
+..+ +.+-|-..|-.+|..++++.
T Consensus 616 iKld---LfsaLg~akrq~ei~~~~~~ 639 (697)
T PF09726_consen 616 IKLD---LFSALGDAKRQLEIAQGQLR 639 (697)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6554 35667788888888887764
No 134
>PF15294 Leu_zip: Leucine zipper
Probab=85.76 E-value=29 Score=31.91 Aligned_cols=109 Identities=18% Similarity=0.288 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh---------HHHHHHHH
Q psy8596 101 LELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS---------EEKTMQEK 171 (237)
Q Consensus 101 lEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~---------~~~~~q~~ 171 (237)
+-+++.+++.+...+ .+++..++........+-..++..|..+++..+...+ ++-.|..+
T Consensus 130 l~kEi~rLq~EN~kL-----------k~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k 198 (278)
T PF15294_consen 130 LNKEIDRLQEENEKL-----------KERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENK 198 (278)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHH
Confidence 344555555555444 4777777888888888888888888888884443322 23334455
Q ss_pred HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 172 VEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 172 le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
+.....++.+....++. ....+.+.+..+-..+-+.|..+.-+..+|++
T Consensus 199 ~a~lK~e~ek~~~d~~~---~~k~L~e~L~~~KhelL~~QeqL~~aekeLek 247 (278)
T PF15294_consen 199 MAALKSELEKALQDKES---QQKALEETLQSCKHELLRVQEQLSLAEKELEK 247 (278)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcchhhhcchhhHHH
Confidence 55554444444333332 45567777777777788888888888877776
No 135
>KOG0977|consensus
Probab=85.73 E-value=41 Score=33.72 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhHhhH--HHHHHHHhhhhHHHHHH---HhhhhHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8596 37 DQERQEERDLHERDI--AEYKLKLHAYESEVEEL---ELGKSKA-------ELDKAANEVGRSGADWEAARQRLSRLELE 104 (237)
Q Consensus 37 ery~elk~e~~~lei--~~~~~~~~~l~~el~~l---e~~~lq~-------elek~q~E~~rleaele~~K~ei~qlEkE 104 (237)
++-|-|+.+.+.|++ .++...+..--..+..+ ++..... ...++..++.++.+++..++..+....+.
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444555555555543 33444443333333333 3333333 33333344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 105 NERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 105 le~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
....+..+-.....+..++. .+.-++..+.+....+..+..++...|..+..+++.
T Consensus 136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444444444444444443 444555555555555666665555555555555554
No 136
>KOG0995|consensus
Probab=85.69 E-value=42 Score=33.77 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH
Q psy8596 12 LSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL 68 (237)
Q Consensus 12 L~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l 68 (237)
..||++.-.-+-..+..|+.+...+.--.. ..+--.=-+..+..++..+++|+.++
T Consensus 223 k~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~ 278 (581)
T KOG0995|consen 223 KHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKF 278 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHH
Confidence 467777777777777777777766543333 11111122445566666666666655
No 137
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.48 E-value=24 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=12.9
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLS 99 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~ 99 (237)
+..+++..+..+...-+++..++..++..+.
T Consensus 23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443344444444444443333
No 138
>KOG1962|consensus
Probab=85.34 E-value=14 Score=32.79 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=9.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhH
Q psy8596 168 MQEKVEKSQGEVYRLKAKLENTQGEM 193 (237)
Q Consensus 168 ~q~~le~~q~~~~~~~~~le~~q~~~ 193 (237)
+-+++++...++....++|+.+|.+-
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~ 181 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKV 181 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 139
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=85.32 E-value=27 Score=31.13 Aligned_cols=50 Identities=8% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHH----HHHHHhHhHHHHHHHHHHHHHhhhh
Q psy8596 185 KLENTQGEMESMKEEYERTQGTLSR----LLSERDKAVLEMDKSKEELERSQAT 234 (237)
Q Consensus 185 ~le~~q~~~~~~~~~~~~~q~~~~~----~~~e~d~~~~e~~~~~e~le~~q~~ 234 (237)
++..|+.=+.+++..|.+-+....- +...+....+.|..+++-|..++..
T Consensus 154 El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 154 ELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555455555554443333333 3444456666677777766666543
No 140
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.24 E-value=23 Score=29.58 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=46.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQ 148 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q 148 (237)
.+..++.+...+...++.-..++..++..+..-=..+..+++.+.-+...+... ..+|........++..++....
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l----~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERL----KQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666666555444443 3333333333333334444443
Q ss_pred HHHHHHHHhhHh
Q psy8596 149 AELRVVQADNER 160 (237)
Q Consensus 149 ~~le~~q~~~~~ 160 (237)
.....+...+.+
T Consensus 119 ~~r~k~~~~~~~ 130 (177)
T PF13870_consen 119 KERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 141
>KOG0999|consensus
Probab=84.12 E-value=51 Score=33.39 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
+...+.-++.. ..++.++..++.++.-.+.++..+...++.+.+
T Consensus 35 AeyGL~lLeeK-~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 35 AEYGLELLEEK-EDLKQQLEELEAEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444432 356778888888888888888888888887765
No 142
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.29 E-value=0.36 Score=49.19 Aligned_cols=157 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHHHHHHHHH
Q psy8596 70 LGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQE---KYDKTCADLRR 146 (237)
Q Consensus 70 ~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqe---k~ekl~~ELe~ 146 (237)
+..++.+++.+..++.+++......+.++..++.++..++.....+...-..+. .+..+++-+-+ +..++...+++
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~-~LrDElD~lR~~a~r~~klE~~ve~ 319 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREAR-ALRDELDELREKADRADKLENEVEK 319 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555554443332222 23344444433 33445555555
Q ss_pred HHHHHHHHHHhhHhhh---h-----------------HHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHH
Q psy8596 147 AQAELRVVQADNERVR---S-----------------EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGT 206 (237)
Q Consensus 147 ~q~~le~~q~~~~~~~---~-----------------~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~ 206 (237)
-..+++.+..-..++. . -+-.+..+++....++..+..++.......+.+.-++...+..
T Consensus 320 YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek 399 (713)
T PF05622_consen 320 YKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEK 399 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443333221 1 1233455566666666677777766666666666666666667
Q ss_pred HHHHHHHHhHhHHHHHHHHHH
Q psy8596 207 LSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 207 ~~~~~~e~d~~~~e~~~~~e~ 227 (237)
+..+..+++.+.++.+.+++.
T Consensus 400 ~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 400 LEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 766777777777766666663
No 143
>PRK11281 hypothetical protein; Provisional
Probab=83.02 E-value=76 Score=34.59 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH-HhhhhHHHHHHHHHHHhhhhhhHHHHHHH--------
Q psy8596 27 NQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL-ELGKSKAELDKAANEVGRSGADWEAARQR-------- 97 (237)
Q Consensus 27 ~~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l-e~~~lq~elek~q~E~~rleaele~~K~e-------- 97 (237)
..++.|.+.+.+ ...-..-.+.-++.|..-+.-+..-.... ....++..+..+-.++.....+++..+..
T Consensus 39 ~~iq~~l~~~~~-~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~ 117 (1113)
T PRK11281 39 ADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRET 117 (1113)
T ss_pred HHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccccccc
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHhh
Q psy8596 98 -----LSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQ--------ADNERV 161 (237)
Q Consensus 98 -----i~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q--------~~~~~~ 161 (237)
..++|+.+......+...+..+....+ ..+.+..+.+.........+......+.... +....+
T Consensus 118 ~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l 197 (1113)
T PRK11281 118 LSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLL 197 (1113)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHH
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhH-hHHHHHHHHHHHHHhh
Q psy8596 162 RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDK-AVLEMDKSKEELERSQ 232 (237)
Q Consensus 162 ~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~-~~~e~~~~~e~le~~q 232 (237)
+.+...+..+.+-.+-+..---.-.+=.+.+++-+..++...+..++.||.-... -..+.+++-++...++
T Consensus 198 ~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~ 269 (1113)
T PRK11281 198 QAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQD 269 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 144
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.00 E-value=34 Score=30.48 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 89 ADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 89 aele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
.=|...+.++..|..|-..+-++|..+...|..+++ ....+-........++.++...+...++....
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333 22233333333333344444444444433333
No 145
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.88 E-value=41 Score=31.38 Aligned_cols=217 Identities=23% Similarity=0.282 Sum_probs=103.6
Q ss_pred cccChHhHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHhhHHH--------------HHHHHhhhhHHH
Q psy8596 4 HHCSSEGALSSLEEAIGDKEKQMNQLREQRDR----ADQERQEERDLHERDIAE--------------YKLKLHAYESEV 65 (237)
Q Consensus 4 ~~~~Te~nL~RveDil~Evekql~~L~~Qa~k----aery~elk~e~~~lei~~--------------~~~~~~~l~~el 65 (237)
+++++...-.++..-|+.+....+.|+...+. +..+...-..++.-++.. +..++..+..+.
T Consensus 14 ~~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keK 93 (310)
T PF09755_consen 14 MTSSSSATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEK 93 (310)
T ss_pred CCCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444477888888888888888887642 223333223333222221 223466666666
Q ss_pred HHH----------HhhhhHHHHHHHHHHHhhhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q psy8596 66 EEL----------ELGKSKAELDKAANEVGRSGADWE--------AARQRLSRLELENERLKHELERSQTTFGRTTLSTS 127 (237)
Q Consensus 66 ~~l----------e~~~lq~elek~q~E~~rleaele--------~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q 127 (237)
..+ -.+.+..++.++..+-..++..++ .+...|..++.+...++..+..+....-.+++.+.
T Consensus 94 e~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE 173 (310)
T PF09755_consen 94 ETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLE 173 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 666 233334444444443333333333 33334444444444444444544444444444221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHhh-----hhHHHHHHHHHHhhHHHHHHHHHHHHhhhh---
Q psy8596 128 ----AELDRLQEKYDKTCADLRRAQAELRVVQAD----NERV-----RSEEKTMQEKVEKSQGEVYRLKAKLENTQG--- 191 (237)
Q Consensus 128 ----~eL~~Lqek~ekl~~ELe~~q~~le~~q~~----~~~~-----~~~~~~~q~~le~~q~~~~~~~~~le~~q~--- 191 (237)
-=++.|..+.+++..+-+.++.+|...=++ .+-. .+..+++..-+...-.++.||...|-+++.
T Consensus 174 ~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 174 QEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113455566666666666666665531110 0001 012344444455555556666666655552
Q ss_pred --------hHHHHHHHHHHhHHHHHHHHHHHhHhHHH
Q psy8596 192 --------EMESMKEEYERTQGTLSRLLSERDKAVLE 220 (237)
Q Consensus 192 --------~~~~~~~~~~~~q~~~~~~~~e~d~~~~e 220 (237)
+...++++--++|-.+++-...|...+..
T Consensus 254 ~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~ 290 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQRKLQREVERREALCRH 290 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444455555554444444444433
No 146
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.77 E-value=41 Score=31.29 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=46.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Q psy8596 166 KTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQA 233 (237)
Q Consensus 166 ~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~ 233 (237)
.=+...++.++..+......|...+..+..+.+.+...+..+.....+......+++.+..+|+++..
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 33556677777666666666666666666666666666666666666666677777777777776654
No 147
>KOG0982|consensus
Probab=82.45 E-value=51 Score=32.22 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----HHHHHH----HHHHHHHHHHHHH
Q psy8596 74 KAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLST----SAELDR----LQEKYDKTCADLR 145 (237)
Q Consensus 74 q~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~----q~eL~~----Lqek~ekl~~ELe 145 (237)
..++..+...+..+..+-.-.-++.+.+-.|+-.+....+-+....+..+... ..+-++ +-.......-+.+
T Consensus 221 ~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~E 300 (502)
T KOG0982|consen 221 ERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKE 300 (502)
T ss_pred HHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444445556666667667776666666666555422 111111 1222334456778
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHH
Q psy8596 146 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSK 225 (237)
Q Consensus 146 ~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~ 225 (237)
+.+.++..+-..+..+++....|..-.++.-++.+|+-..||.+-.++-..++.+.+--..+-|-|.+...-+.=++.++
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelr 380 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELR 380 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999888888888888888888887788888
Q ss_pred HHHHHhhh
Q psy8596 226 EELERSQA 233 (237)
Q Consensus 226 e~le~~q~ 233 (237)
.+|+..|-
T Consensus 381 kelehlr~ 388 (502)
T KOG0982|consen 381 KELEHLRR 388 (502)
T ss_pred HHHHHHHH
Confidence 88887663
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.13 E-value=67 Score=33.28 Aligned_cols=104 Identities=15% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q psy8596 56 LKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRL 133 (237)
Q Consensus 56 ~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~L 133 (237)
.++..+...++.. ++..++..+..+..-..++...++.+.+....+.+.+..+-..++...-.+-.++...-++|+.+
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~ 644 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERM 644 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 3333344433333 44555555555555555555566655555555555555554444333222333333444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 134 QEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 134 qek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
..++..++.-|+.+..+++..+.+.+
T Consensus 645 ~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 645 KDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555444433
No 149
>KOG0980|consensus
Probab=82.02 E-value=74 Score=33.77 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q psy8596 164 EEKTMQEKVEKSQGEVYRLKAKLE 187 (237)
Q Consensus 164 ~~~~~q~~le~~q~~~~~~~~~le 187 (237)
-++.+..+|..+++++.+++..+.
T Consensus 495 ~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 495 ALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555543
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.64 E-value=52 Score=31.71 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Q psy8596 179 VYRLKAKLENTQGEMESMKEEYER 202 (237)
Q Consensus 179 ~~~~~~~le~~q~~~~~~~~~~~~ 202 (237)
..+|+.+.+.++.-.+.+-..++.
T Consensus 357 l~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 357 LTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333
No 151
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.56 E-value=27 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=14.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~ 115 (237)
+..++.++...++.++.++..++.++.........+
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333333
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.28 E-value=36 Score=29.65 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=16.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQ 116 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q 116 (237)
+..+...+...++..-.....+-.++..++..+-.++
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 153
>KOG3647|consensus
Probab=81.07 E-value=46 Score=30.72 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=52.5
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDK 139 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ek 139 (237)
-...+++-+..++.++..+.+.++........++..|++.+.++++....+..++++-=.-|+..+.-.+.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~Eee 176 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEE 176 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33456667777888888888888888888889999999999999999988888887443444443333333
No 154
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.84 E-value=39 Score=29.83 Aligned_cols=58 Identities=10% Similarity=0.295 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRL 182 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~ 182 (237)
..+.+++.+......+..+++.+..+++.+...+.++..-+...+.+++..+.+...+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777777777777655544444444444444444333
No 155
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.52 E-value=67 Score=32.25 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=100.5
Q ss_pred ccChHhHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHhhHhhHHHHHHHHhhhhHHH
Q psy8596 5 HCSSEGALSSLEEAIGDKEKQMNQLREQRDRAD-------------------QERQEERDLHERDIAEYKLKLHAYESEV 65 (237)
Q Consensus 5 ~~~Te~nL~RveDil~Evekql~~L~~Qa~kae-------------------ry~elk~e~~~lei~~~~~~~~~l~~el 65 (237)
+-|..||--.-..+|.+.+++|..|+-..++-= -|+.++.+-+.|.---....++.+...+
T Consensus 185 ~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l 264 (570)
T COG4477 185 ELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQL 264 (570)
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHH
Confidence 334455555556777777777777777766542 3444444444443333334444444443
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy8596 66 EELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLR 145 (237)
Q Consensus 66 ~~le~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe 145 (237)
.+....-.+-+++.+..+++.++..++... ..++.|++..+.=...+ ..+-.-+.+..+..+-+..+++
T Consensus 265 ~~~~~~l~~Leld~aeeel~~I~e~ie~lY---d~lE~EveA~~~V~~~~--------~~l~~~l~k~ke~n~~L~~Eie 333 (570)
T COG4477 265 VENSELLTQLELDEAEEELGLIQEKIESLY---DLLEREVEAKNVVEENL--------PILPDYLEKAKENNEHLKEEIE 333 (570)
T ss_pred HHHHhHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC--------cchHHHHHHHHHHHHHHHHHHH
Confidence 333222222222222223333333332222 22233333222111110 0344555666666666666666
Q ss_pred HHHHHHH----------HHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHh
Q psy8596 146 RAQAELR----------VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERD 215 (237)
Q Consensus 146 ~~q~~le----------~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d 215 (237)
.....-. .++.+++.+.+.+..+-+..+..---..-++..++.....+..+.++-++.+..+..|-++==
T Consensus 334 ~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl 413 (570)
T COG4477 334 RVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDEL 413 (570)
T ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5544322 222222223333333333333333333445556666666677777777777777777766655
Q ss_pred HhHHHHHHHHHHHH
Q psy8596 216 KAVLEMDKSKEELE 229 (237)
Q Consensus 216 ~~~~e~~~~~e~le 229 (237)
.|+..+..++.++.
T Consensus 414 ~Are~l~~~~~~l~ 427 (570)
T COG4477 414 EARENLERLKSKLH 427 (570)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 156
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.52 E-value=31 Score=35.37 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 126 ~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
...++..|+.+...+..++..+..++..+...+++
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777777776
No 157
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.25 E-value=54 Score=30.44 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHH
Q psy8596 73 SKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAELDRLQEKYDKTCADLR 145 (237)
Q Consensus 73 lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL~~Lqek~ekl~~ELe 145 (237)
+..=+..+...++.+..+...+......+..-+..+......+..++..+.. .-.++++.+.+++.....++.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555444444444444455555555555444444443 457789999999999999999
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh----hhHHHHHHHHHHhHH
Q psy8596 146 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ----GEMESMKEEYERTQG 205 (237)
Q Consensus 146 ~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q----~~~~~~~~~~~~~q~ 205 (237)
.....+...+.++..+.+.++....+....++++..+...++... .++..|++++...|.
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999998888888888888888888888888877777776655 577777777766554
No 158
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.20 E-value=20 Score=32.77 Aligned_cols=66 Identities=26% Similarity=0.419 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q psy8596 147 AQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212 (237)
Q Consensus 147 ~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~ 212 (237)
...++..++.....+.++-.+|-.++++--.++.|.++.|...|+=.=..-++|++....++.+-.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445557888888888888888888888888878888888888877776643
No 159
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.72 E-value=44 Score=29.10 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 174 KSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 174 ~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
.++..+.+|+..|.-++.+...+...-..++...+-|..++..++..|.+++.-
T Consensus 123 ~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~q 176 (192)
T PF11180_consen 123 ESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQ 176 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444433
No 160
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=78.65 E-value=39 Score=28.46 Aligned_cols=123 Identities=13% Similarity=0.256 Sum_probs=72.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL----STSAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~----~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
+..++..++...+..+...-.++..+....-.+...+..... ++...+..+=+.+..++-.+.-...+-..++.-.
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433333222 4466666666666666666666666666666666
Q ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 159 ERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 159 ~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
+.+.-.+.++..-+++|..-+.++--=|+=..+++..+-..++.++.
T Consensus 108 D~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 108 DELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666777777777766666666666666666666666665554
No 161
>KOG0994|consensus
Probab=78.36 E-value=1.1e+02 Score=33.70 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEME 194 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~ 194 (237)
++++.-.+..+..+...+..+....+.++-..-+...++.+.......+++.+......++..|...+
T Consensus 1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~ 1671 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYE 1671 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566666666666555554444455555555556666666555555554444443
No 162
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.25 E-value=14 Score=34.40 Aligned_cols=89 Identities=24% Similarity=0.364 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q psy8596 135 EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSER 214 (237)
Q Consensus 135 ek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~ 214 (237)
.++..+..++...+..+...+..+..+...+..|+..++.+..+..++ +.+.+....++++|..-+.-|-.|+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l-------~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL-------EEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhccHHHHHhhhcchh
Confidence 344444444444444444444444444444444444444444443333 3444444555666666666666666
Q ss_pred hHhHHHHHHHHHHHHH
Q psy8596 215 DKAVLEMDKSKEELER 230 (237)
Q Consensus 215 d~~~~e~~~~~e~le~ 230 (237)
..-...+..+...+..
T Consensus 294 ~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 294 ERWSEQIEELEEQLKN 309 (344)
T ss_dssp HCCHCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcc
Confidence 6555555555555443
No 163
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.42 E-value=28 Score=34.29 Aligned_cols=78 Identities=17% Similarity=0.341 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHH-HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q psy8596 137 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEV-YRLKAKLENTQGEMESMKEEYERTQGTLSRLLSER 214 (237)
Q Consensus 137 ~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~-~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~ 214 (237)
..-+.+.+.....++..+..+|+.+..++++|+.....--+.+ ..+..+....+.+.++++.+.-++++.++.|+..+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666665554433322222 12222222233334444444444444444444433
No 164
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=77.22 E-value=26 Score=25.69 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
+..+|.+-+.---+.+.|.+.|..+.-++-.-==+.|-|.-.+.|+-+|||.+...|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 456677777777788888888888888887777788999999999999999999988764
No 165
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.10 E-value=51 Score=29.01 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
.++.....+...+...+......+...+.....++..+......+....+-.......+...+..+...+..+...
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 138 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQL 138 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444333444444444444444444444444443
No 166
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.03 E-value=1e+02 Score=32.45 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
+..++..+.+...-...+...+...-+....+...+..+...+-.....+......++...+.+...
T Consensus 370 ~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 370 LEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444445555555555555555555555555555555555555555555554444433
No 167
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.78 E-value=97 Score=32.04 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 126 ~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
...+...++.+..++..|+...+..+..+..+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666555555553
No 168
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=76.56 E-value=62 Score=29.67 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhHh
Q psy8596 142 ADLRRAQAELRVVQADNER 160 (237)
Q Consensus 142 ~ELe~~q~~le~~q~~~~~ 160 (237)
..+..++..+...+.+.++
T Consensus 121 ~~i~~a~~~l~~a~~~~~R 139 (346)
T PRK10476 121 EQVERARANAKLATRTLER 139 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 169
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.34 E-value=54 Score=28.87 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=9.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 207 LSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 207 ~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
+..++.+.......+..+...+...
T Consensus 121 ~~~~~~~~~~~~~~l~~l~~~l~~~ 145 (302)
T PF10186_consen 121 LEELQNELEERKQRLSQLQSQLARR 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 170
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.94 E-value=95 Score=31.50 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
-+..|+.-++....++..+...|+.++.-+..--..++.... ..-.++..+..+...+..++......+..+.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444433333332221 3346777777777777888888777777777
Q ss_pred HhhHhhh
Q psy8596 156 ADNERVR 162 (237)
Q Consensus 156 ~~~~~~~ 162 (237)
++++++-
T Consensus 475 ~e~e~~~ 481 (594)
T PF05667_consen 475 KELEKLP 481 (594)
T ss_pred HHHHhCC
Confidence 7777643
No 171
>KOG3647|consensus
Probab=75.84 E-value=67 Score=29.69 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhh----hhHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy8596 87 SGADWEAARQRLSRLELENERLKHELERSQTT---FGRTTL----STSAELDRL------QEKYDKTCADLRRAQAELRV 153 (237)
Q Consensus 87 leaele~~K~ei~qlEkEle~~qeel~e~q~~---i~~~e~----~~q~eL~~L------qek~ekl~~ELe~~q~~le~ 153 (237)
-++.|...+.-|+-+-.++...+.-...+..+ |-..-+ ..+..+..+ .+-..-+..=|.....++..
T Consensus 44 ~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~ 123 (338)
T KOG3647|consen 44 EEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQS 123 (338)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776665544333211 111101 111111111 11111122222233333333
Q ss_pred HHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHH
Q psy8596 154 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRL 210 (237)
Q Consensus 154 ~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~ 210 (237)
+.+.+.-.-++...|-+++++---+..|+++.||+.|+=.=..=++|++....++.+
T Consensus 124 ~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 124 SRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333333333445577777777777777777777777777666777777766555543
No 172
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.46 E-value=28 Score=25.20 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 189 TQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 189 ~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
.+.....|..+-+.+-..+...-.+-+++.+|++-++.+|+.
T Consensus 24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444443
No 173
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=74.95 E-value=64 Score=29.11 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 133 LQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 133 Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
++.....+...+...+..+..++.+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~a~~~~~R 122 (327)
T TIGR02971 95 LFKDVAAQQATLNRLEAELETAQREVDR 122 (327)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 174
>KOG0018|consensus
Probab=74.77 E-value=1.3e+02 Score=32.63 Aligned_cols=131 Identities=13% Similarity=0.264 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHH-------HHH
Q psy8596 28 QLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAAR-------QRL 98 (237)
Q Consensus 28 ~L~~Qa~kaery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K-------~ei 98 (237)
.-+.+...|++|+.++.++.++....+...+-.......+. ++...+..+.+.....+.-+.++...+ ..+
T Consensus 192 ~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~ 271 (1141)
T KOG0018|consen 192 EAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRREL 271 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456668999999999999999999888887777776666 444444444444333333333333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 99 SRLELENERLKHELERSQTTFGRTTL---------STSAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 99 ~qlEkEle~~qeel~e~q~~i~~~e~---------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
...++.+......+.+-..-|.-.++ .....+...+..+....+.+++....+..+-.-.
T Consensus 272 ~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~ 340 (1141)
T KOG0018|consen 272 QKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAK 340 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333331111111111 2245555566666666666666666665554433
No 175
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.71 E-value=13 Score=24.76 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 191 GEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 191 ~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
-|-+.|+..|+..-+...+|..|.+...+++..++..+.
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356788899999999999999999999999998888763
No 176
>KOG2264|consensus
Probab=74.43 E-value=17 Score=36.80 Aligned_cols=61 Identities=16% Similarity=0.332 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHH
Q psy8596 138 DKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 198 (237)
Q Consensus 138 ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~ 198 (237)
..-..|+..++.+...++++..+++...+.++..+.+.|.++.+|+.+.|.||-.++.+.+
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445667777777777777777777777777777777777777777777777777666654
No 177
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.22 E-value=74 Score=29.48 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=32.0
Q ss_pred HhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 156 ADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 156 ~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
++.+.+...+..+-+++...-.+++..-.++-.+=..++.++++.+-.+..+.......|..+.++-.++.+
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~e 236 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNE 236 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444555555555555555555444444444444444433
No 178
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=73.90 E-value=87 Score=30.11 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=16.5
Q ss_pred HhHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 202 RTQGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 202 ~~q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
.+...+...+.+++.+...+...+..+.++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555556666665555555443
No 179
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=73.79 E-value=1.1 Score=45.88 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8596 132 RLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 132 ~Lqek~ekl~~ELe~~q~~l 151 (237)
++..+...+..++.......
T Consensus 118 ~l~~~~~~le~el~~~~e~~ 137 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEEL 137 (722)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 180
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=71.46 E-value=78 Score=28.51 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=6.5
Q ss_pred hHhHHHHHHHHHHHH
Q psy8596 215 DKAVLEMDKSKEELE 229 (237)
Q Consensus 215 d~~~~e~~~~~e~le 229 (237)
..+...+...+..+.
T Consensus 189 ~~~~~~l~~a~~~l~ 203 (334)
T TIGR00998 189 QEAKERLKTAWLALK 203 (334)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444444444443
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.40 E-value=77 Score=32.32 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 126 ~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
...++..|..++..-...++.+..++..+.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544443
No 182
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.85 E-value=38 Score=24.72 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKE 198 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~ 198 (237)
++.|+.+...+-.-|.-++.++..+...+. .+.+.-+....+..+++.+..+.+..+..+=+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~-------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNN-------ELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444444444433 33344444444444555555555544444433
No 183
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.15 E-value=95 Score=29.00 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHhh
Q psy8596 87 SGADWEAARQRLSRLELENERLKHE-LERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAEL-RVVQADNERV 161 (237)
Q Consensus 87 leaele~~K~ei~qlEkEle~~qee-l~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~l-e~~q~~~~~~ 161 (237)
+...+.+++.+-..++..++.-+.. ++.+...|..+.. ..+..+.+|-.....+..-|+.-+.-| +.++.+.+++
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l 190 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKL 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544433 4555555554433 223333333333333333333332221 2233444444
Q ss_pred hhHHHHHHHHHH
Q psy8596 162 RSEEKTMQEKVE 173 (237)
Q Consensus 162 ~~~~~~~q~~le 173 (237)
-.+-..||.+|+
T Consensus 191 ~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 191 EAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHc
Confidence 444555555555
No 184
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.13 E-value=72 Score=27.59 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=48.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQ 148 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q 148 (237)
-+..++.++.............+..+..+...+-.-|.....++..+...+..++. .-..+..+..++..+..++..+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k-dK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK-DKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544444444444444444544444545555555555555544444433 01122223333333333333333
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHH
Q psy8596 149 AELRVVQADNERVRSEEKTMQEKVEKSQGEVYR 181 (237)
Q Consensus 149 ~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~ 181 (237)
-..+.+.-.+.++..+-+.|..+.+.+--++++
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344455555555555544
No 185
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.95 E-value=81 Score=28.08 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 51 IAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTT 118 (237)
Q Consensus 51 i~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~ 118 (237)
|..|..-...|..+...+ ++..+..++..+.+.+..+..+.......+..+..+|..++..+++...+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333 44444455555555555555555555555555555666666666655555
No 186
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.65 E-value=45 Score=30.00 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=64.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhh------h----------hhh----
Q psy8596 78 DKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQT-------------TFG------R----------TTL---- 124 (237)
Q Consensus 78 ek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~-------------~i~------~----------~e~---- 124 (237)
+.++.++..+.+++++.+.-+..||..|...+........ .+. . ...
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4567788888888888888888888888888755222111 000 0 000
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhH
Q psy8596 125 -STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 176 (237)
Q Consensus 125 -~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q 176 (237)
+...+=|++-.+...+..++......+..++.+.+.++.|+-.|=++.-=.|
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355667777777777777777777777777777777777667666654443
No 187
>KOG1003|consensus
Probab=69.52 E-value=78 Score=27.77 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhHhhHHH----HHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHH
Q psy8596 20 GDKEKQMNQLREQRDRAD-QERQEERDLHERDIAE----YKLKLHAYESEVEELELGKSKAELDKAANEVGRSGADWEAA 94 (237)
Q Consensus 20 ~Evekql~~L~~Qa~kae-ry~elk~e~~~lei~~----~~~~~~~l~~el~~le~~~lq~elek~q~E~~rleaele~~ 94 (237)
.=+.+-|..|+.++++++ ||......+.+.+..- -.+++-..+...-+=.++.+..++..+.--.......++..
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEV 86 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEV 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899998874 5666666665554331 11111111111100034444444444433333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
-..+.-++.+|++.-+..+-..+.+..+.. ...+.+.+|.-..+++....+.....++.+-.
T Consensus 87 arkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd 151 (205)
T KOG1003|consen 87 ARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD 151 (205)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555556666666666665555555555544 44455555555555555555555555444433
No 188
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.28 E-value=77 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
+..||.+|...+.+-.++...-..++.+...|..+-.-+|.
T Consensus 128 a~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqa 168 (192)
T PF11180_consen 128 ANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQA 168 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444444444444333333333
No 189
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.76 E-value=38 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy8596 161 VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201 (237)
Q Consensus 161 ~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~ 201 (237)
+.++.+.|..+++...+++.-+..+.-.++.+..+.-..++
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444433333
No 190
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=68.39 E-value=73 Score=29.50 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=4.1
Q ss_pred hHhHHHHHHHH
Q psy8596 215 DKAVLEMDKSK 225 (237)
Q Consensus 215 d~~~~e~~~~~ 225 (237)
..+...++..+
T Consensus 168 ~~~~~~l~~~~ 178 (370)
T PRK11578 168 KRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 191
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=68.28 E-value=94 Score=28.22 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=8.2
Q ss_pred HhHhHHHHHHHHHHHHHhh
Q psy8596 214 RDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 214 ~d~~~~e~~~~~e~le~~q 232 (237)
++.+...+...+..++.++
T Consensus 180 ~~~~~~~l~~~~~~l~~a~ 198 (331)
T PRK03598 180 IAQAKASLAQAQAALAQAE 198 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 192
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=67.90 E-value=1.6e+02 Score=30.83 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHH
Q psy8596 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQG 177 (237)
Q Consensus 126 ~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~ 177 (237)
+..++..+......+...+......++.++.++..+...+..|+.+|+.+..
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555556555555555555555555555554443
No 193
>KOG4360|consensus
Probab=67.84 E-value=1.4e+02 Score=29.99 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 33 RDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHEL 112 (237)
Q Consensus 33 a~kaery~elk~e~~~lei~~~~~~~~~l~~el~~le~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel 112 (237)
+-+|--|+-...=|...+...|.+-+..+++.-... .-.+..+.....++.+...+..++-..|.-+.+++-.+..+.
T Consensus 179 r~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~--~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ek 256 (596)
T KOG4360|consen 179 RSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQA--RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEK 256 (596)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356788888888899999999988888777655443 222233333333444444444444444444444444444444
Q ss_pred HHHHHHhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 113 ERSQTTFGRTT---LSTSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 113 ~e~q~~i~~~e---~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
+....=+..+- -....++..+++++..+-+.+..++.+|+.+++
T Consensus 257 eel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 257 EELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44443333332 266788999999999999999999999887764
No 194
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.58 E-value=86 Score=27.50 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=26.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~ 122 (237)
...++..+..+-+.+..++.-++.-++.+....+++...|.++
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666555555
No 195
>KOG1029|consensus
Probab=66.79 E-value=1.8e+02 Score=30.88 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
.++.+|..+++++-++.-|-..+..++...|+-+
T Consensus 490 qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 490 QLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 4567777788888888777777777777666543
No 196
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=66.57 E-value=1.5e+02 Score=29.87 Aligned_cols=207 Identities=15% Similarity=0.144 Sum_probs=119.0
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHhhHHH--HHHHHhhhhHHHHHH-----HhhhhHHHHHH
Q psy8596 8 SEGALSSLEEAIGDKEKQMNQLREQRDRAD-QERQEERDLHERDIAE--YKLKLHAYESEVEEL-----ELGKSKAELDK 79 (237)
Q Consensus 8 Te~nL~RveDil~Evekql~~L~~Qa~kae-ry~elk~e~~~lei~~--~~~~~~~l~~el~~l-----e~~~lq~elek 79 (237)
|.=+|.+.++.|+.+.-.|..++..-++.= .++....-..-+...+ .+..-..|..+.+.+ --..-..-..+
T Consensus 272 ~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~ 351 (570)
T COG4477 272 TQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRK 351 (570)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 344677788888888888888888776632 2222222222221111 112222233333333 01111122333
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
..+++..+...+......+..-..-++..+..++.+...+...++ ..++.|..|....-.+...+.+...++..+--
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666677777777777777777766665 66788888888888888888888888877776
Q ss_pred hhHhhh--hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q psy8596 157 DNERVR--SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSER 214 (237)
Q Consensus 157 ~~~~~~--~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~ 214 (237)
-.++.. |==+....-+.-+-..++.+-.+|..--..++++..-++.|..++..+-.+.
T Consensus 432 ~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t 491 (570)
T COG4477 432 YMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDET 491 (570)
T ss_pred HHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666644 2223333334444445555555555555566666666666666665554443
No 197
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.48 E-value=93 Score=27.46 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 131 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 131 ~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
...+.+.+.+..+-..+..+++.+..+.+.+...+.+++..++..+.++..+..+++++.
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444444444444444444444444443333
No 198
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.46 E-value=1.5e+02 Score=29.92 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy8596 100 RLELENERLKHELERSQTTFGRTT 123 (237)
Q Consensus 100 qlEkEle~~qeel~e~q~~i~~~e 123 (237)
.++.++.....++.+....+...-
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444433
No 199
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.88 E-value=86 Score=26.88 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=32.6
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~ 122 (237)
........+..+...+....+.+..++..+..++..|..++.....+.+.....
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666666666666666666666666666666555544443
No 200
>KOG0249|consensus
Probab=65.83 E-value=1.8e+02 Score=30.52 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS 163 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~ 163 (237)
...+.+..+...++++.++|.++..+++.--.++.++.+
T Consensus 160 ~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsd 198 (916)
T KOG0249|consen 160 NIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSD 198 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 335778888888888888888888888887777776553
No 201
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.69 E-value=1.5e+02 Score=29.47 Aligned_cols=104 Identities=26% Similarity=0.360 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH-----------------HHhhH----HH---HHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK-----------------VEKSQ----GE---VYRL 182 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~-----------------le~~q----~~---~~~~ 182 (237)
..-++.|++-+...+-.|......-+.+|.++.++.+..-.||+. ++++. ++ ++++
T Consensus 389 ~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~l 468 (527)
T PF15066_consen 389 EKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQL 468 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344455555555555555555555555555555555444444332 12221 12 2445
Q ss_pred HHHHHhhh-hhHHHHHHHHHHhHHHHHHHHHHHhHhH----HHHHHHHHHHHH
Q psy8596 183 KAKLENTQ-GEMESMKEEYERTQGTLSRLLSERDKAV----LEMDKSKEELER 230 (237)
Q Consensus 183 ~~~le~~q-~~~~~~~~~~~~~q~~~~~~~~e~d~~~----~e~~~~~e~le~ 230 (237)
+++||+|- +-++.|+.+-+.--..+--||.|.++-. .|-++||-++++
T Consensus 469 kgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leK 521 (527)
T PF15066_consen 469 KGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56666666 6666666666655555555555554433 344555555554
No 202
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=65.64 E-value=1e+02 Score=28.51 Aligned_cols=55 Identities=11% Similarity=0.298 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHH--------HHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Q psy8596 180 YRLKAKLENTQGEMESMKEEY--------ERTQGTLSRLLSERDKAVLEMDKSKEELERSQAT 234 (237)
Q Consensus 180 ~~~~~~le~~q~~~~~~~~~~--------~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~ 234 (237)
..++.++.+.+.++.....++ -.......+|+-+++.+..-++.+-..++.+...
T Consensus 245 ~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~ 307 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVE 307 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444332 3345566677777777777777777666665543
No 203
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=64.96 E-value=40 Score=32.12 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 203 TQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 203 ~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
+++.+...+.....+...++..+..|
T Consensus 168 ~~~~~~~a~a~l~~a~a~l~~a~~~L 193 (415)
T PRK11556 168 QQALVSETEGTIKADEASVASAQLQL 193 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333444444444444433
No 204
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=64.92 E-value=1.3e+02 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=10.0
Q ss_pred HHHHHhHHHHHHHHHHHhHhHHHH
Q psy8596 198 EEYERTQGTLSRLLSERDKAVLEM 221 (237)
Q Consensus 198 ~~~~~~q~~~~~~~~e~d~~~~e~ 221 (237)
......+..+......+|.+.-.|
T Consensus 183 ~~~~~~~~~v~~a~a~~~~A~l~L 206 (352)
T COG1566 183 SEVSGAQAQVASAEAALDQAKLDL 206 (352)
T ss_pred hhhccchhHHHHHHHHHHHHHHHh
Confidence 333334444444444444443333
No 205
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.82 E-value=1.2e+02 Score=28.15 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=43.2
Q ss_pred HHHHHhhHhh--hhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHH
Q psy8596 152 RVVQADNERV--RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSE 213 (237)
Q Consensus 152 e~~q~~~~~~--~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e 213 (237)
-++|-||++. .++.+.|.-+|+-.+..+..++.+...-..++++++..++..+..+.-++.+
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666663 3778888889988888888888888777777777766666555544444433
No 206
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=64.55 E-value=99 Score=27.09 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy8596 100 RLELENERLKHELERSQTTFGR 121 (237)
Q Consensus 100 qlEkEle~~qeel~e~q~~i~~ 121 (237)
.++..+......+...+..+..
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~ 103 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQ 103 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 207
>KOG4360|consensus
Probab=64.09 E-value=1.6e+02 Score=29.50 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRL 182 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~ 182 (237)
....+++.++.+...++.+|..+..++...+-.+.++-+.+--++.++-----+..-|
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4467788888888888888888888877777777776666666665554443333333
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.55 E-value=1.9e+02 Score=30.02 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 202 RTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 202 ~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
...+.+...=.+.+.+..++..++..
T Consensus 689 ~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555666665555543
No 209
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.43 E-value=85 Score=26.48 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhH
Q psy8596 170 EKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQ 204 (237)
Q Consensus 170 ~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q 204 (237)
++..+...++..+..+|+.+..+.+.++.+.+..+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555443
No 210
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=62.34 E-value=59 Score=23.75 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
+++|..+...+-.-+.-|+.+.+.-...-..+.++.+.....+.+++.++....+-|..+=.+++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555555555555555555566666666666777777777766666554443
No 211
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=62.13 E-value=1e+02 Score=26.58 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy8596 143 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENT 189 (237)
Q Consensus 143 ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~ 189 (237)
-+..+..++..+..++..+.-+.+-|.....+.+.+...|....+.+
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444333
No 212
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=61.62 E-value=49 Score=30.87 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=8.0
Q ss_pred HHHHhHhHHHHHHHHHHHH
Q psy8596 211 LSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 211 ~~e~d~~~~e~~~~~e~le 229 (237)
+..++.+.+.+...+..|.
T Consensus 152 ~a~~~~a~a~l~~a~~~l~ 170 (385)
T PRK09578 152 KAAVASAKAELARAQLQLD 170 (385)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444443
No 213
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=60.27 E-value=82 Score=24.74 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=36.3
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQ 116 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q 116 (237)
....+..++......+.+++.+++.+..+..+|.+.++.++.++....
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444666677777777888888888888888888888888888887543
No 214
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=59.69 E-value=1.4e+02 Score=27.29 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLR 145 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe 145 (237)
..+++.....+..+...+.
T Consensus 151 ~~~~~~a~~~~~~a~~~l~ 169 (346)
T PRK10476 151 AQQVDQARTAQRDAEVSLN 169 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.25 E-value=1e+02 Score=25.48 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
+..+......+..++..+......+.+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 216
>KOG4643|consensus
Probab=58.90 E-value=2.7e+02 Score=30.32 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=53.7
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL------STSAELDRLQEKYDKTCA 142 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~------~~q~eL~~Lqek~ekl~~ 142 (237)
++..+.....++...+..++..+.........++..--.++.+...++.++...+. .....++++-.-++...+
T Consensus 402 K~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~ 481 (1195)
T KOG4643|consen 402 KHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEA 481 (1195)
T ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555555566666677777777777777777777666677777777666666554 233444555554555555
Q ss_pred HHHHHHHHHHHHHHhhHh
Q psy8596 143 DLRRAQAELRVVQADNER 160 (237)
Q Consensus 143 ELe~~q~~le~~q~~~~~ 160 (237)
+...+...++....-+..
T Consensus 482 et~el~~~iknlnk~L~~ 499 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNN 499 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555554444444443333
No 217
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.05 E-value=69 Score=23.16 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy8596 176 QGEVYRLKAKL 186 (237)
Q Consensus 176 q~~~~~~~~~l 186 (237)
+...-.|..+.
T Consensus 25 ~~~~k~L~~ER 35 (69)
T PF14197_consen 25 EIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 218
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.38 E-value=88 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
+..+.++.+.+...+..+..++..++..+.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 219
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.73 E-value=2e+02 Score=28.06 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHH
Q psy8596 137 YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEV 179 (237)
Q Consensus 137 ~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~ 179 (237)
+......|......+..-+.++....++.-.-+.+|...+.+-
T Consensus 166 l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~ 208 (420)
T COG4942 166 LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEER 208 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333333333333333333
No 220
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.73 E-value=69 Score=22.47 Aligned_cols=43 Identities=14% Similarity=0.387 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy8596 146 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 188 (237)
Q Consensus 146 ~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~ 188 (237)
++-.....+.+..+++.++...++..+..+++++.|.-..|.|
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444455556666666666666666655554
No 221
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=55.52 E-value=96 Score=24.04 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy8596 135 EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK 171 (237)
Q Consensus 135 ek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~ 171 (237)
.+...-.........++..+.++++.+.++...+...
T Consensus 67 k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 67 KRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 222
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.18 E-value=2.5e+02 Score=28.77 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
-++..++.....+.-+|.+.....+.+..
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333
No 223
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.18 E-value=99 Score=27.76 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.2
Q ss_pred HhHhHHHH
Q psy8596 214 RDKAVLEM 221 (237)
Q Consensus 214 ~d~~~~e~ 221 (237)
-+.|...+
T Consensus 159 y~~Ai~af 166 (263)
T PRK10803 159 QDDAIVAF 166 (263)
T ss_pred HHHHHHHH
Confidence 34444433
No 224
>KOG0962|consensus
Probab=54.95 E-value=3.4e+02 Score=30.25 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=4.2
Q ss_pred HHHHHHHHhHHH
Q psy8596 195 SMKEEYERTQGT 206 (237)
Q Consensus 195 ~~~~~~~~~q~~ 206 (237)
.+...++.+++.
T Consensus 910 ~~~~~l~e~~s~ 921 (1294)
T KOG0962|consen 910 PLKVELEEAQSE 921 (1294)
T ss_pred chhhhHHHHHHH
Confidence 333333333333
No 225
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=54.26 E-value=74 Score=22.37 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKL 186 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~l 186 (237)
..+|+.++++.+.++.++.+.|
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555
No 226
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.35 E-value=1.3e+02 Score=24.85 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhh-hHHHHHHHHHHhhHHH
Q psy8596 133 LQEKYDKTCADLRRAQAELRVVQADNERVR-SEEKTMQEKVEKSQGE 178 (237)
Q Consensus 133 Lqek~ekl~~ELe~~q~~le~~q~~~~~~~-~~~~~~q~~le~~q~~ 178 (237)
+......+..++..+..++..+++...-+. .+...+.....+..++
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555554222211 2444555544444443
No 227
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.02 E-value=91 Score=23.02 Aligned_cols=11 Identities=9% Similarity=-0.031 Sum_probs=4.0
Q ss_pred hhhhhhHHHHH
Q psy8596 85 GRSGADWEAAR 95 (237)
Q Consensus 85 ~rleaele~~K 95 (237)
.-++.+++++|
T Consensus 21 ~LLQmEieELK 31 (79)
T COG3074 21 TLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 228
>KOG0804|consensus
Probab=52.17 E-value=2.5e+02 Score=27.79 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=11.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhh
Q psy8596 97 RLSRLEL-ENERLKHELERSQTTFGR 121 (237)
Q Consensus 97 ei~qlEk-Ele~~qeel~e~q~~i~~ 121 (237)
.+..+++ +|+..+..++........
T Consensus 340 ~~~e~~qsqlen~k~~~e~~~~e~~~ 365 (493)
T KOG0804|consen 340 IMSEYEQSQLENQKQYYELLITEADS 365 (493)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3333333 555555555555444444
No 229
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=51.44 E-value=3.4e+02 Score=29.24 Aligned_cols=32 Identities=6% Similarity=0.001 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 13 SSLEEAIGDKEKQMNQLREQRDRADQERQEER 44 (237)
Q Consensus 13 ~RveDil~Evekql~~L~~Qa~kaery~elk~ 44 (237)
..+.+.+..+...+..+..+...-.+...+..
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (1047)
T PRK10246 226 QVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQ 257 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333333333
No 230
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.40 E-value=2.1e+02 Score=26.81 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=76.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhh------h-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQTT---FGRT------T-LSTSAELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 82 ~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~---i~~~------e-~~~q~eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
.+++.-..+....|.-..++...+..+++....+.-. .++. . ..+..-+...-+....+..++..+..++
T Consensus 16 ~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl 95 (319)
T PF09789_consen 16 QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKL 95 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555444411 1100 0 1334444555555555666666655555
Q ss_pred HHHHHhhHhhh--------------------------hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 152 RVVQADNERVR--------------------------SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 152 e~~q~~~~~~~--------------------------~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
..++-|..=++ .+++.+..+....+.++.-+-.+.+.+=++.+.++.+..+.-.
T Consensus 96 ~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ 175 (319)
T PF09789_consen 96 NEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNH 175 (319)
T ss_pred HHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555533322 1345555555555555555555666777777777777777665
Q ss_pred HHHHHHH-------HHhHhHHHHHHHHHHHH
Q psy8596 206 TLSRLLS-------ERDKAVLEMDKSKEELE 229 (237)
Q Consensus 206 ~~~~~~~-------e~d~~~~e~~~~~e~le 229 (237)
.+.-+-. ..|..+.|---++|++-
T Consensus 176 ELn~~L~g~~~rivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 176 ELNYILNGDENRIVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 5543332 24555555444444443
No 231
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.41 E-value=1.9e+02 Score=26.08 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 161 VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 161 ~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
..+....++.++.++-.++.+.++.-..+-......+++++.+.....+.-.-.+.+.+.++|.+++
T Consensus 115 ~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~~~~~k~~~~~~~sk~~~eK~~~K 181 (264)
T cd07654 115 CTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQAREARSDLSIFQSRTSLQKASVK 181 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHH
Confidence 3345666777777777777666666666656666667777765544433333333344555555443
No 232
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=50.02 E-value=1.8e+02 Score=25.47 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=14.6
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy8596 88 GADWEA--ARQRLSRLELENERLKHELER 114 (237)
Q Consensus 88 eaele~--~K~ei~qlEkEle~~qeel~e 114 (237)
.++|+. ++-++..|+..+.+.......
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456655 455555555555555555444
No 233
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=49.85 E-value=1.5e+02 Score=26.11 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=5.3
Q ss_pred HhHHHHHHHHHHH
Q psy8596 216 KAVLEMDKSKEEL 228 (237)
Q Consensus 216 ~~~~e~~~~~e~l 228 (237)
.+..++..++..+
T Consensus 120 ~~~~~l~~~~~~~ 132 (322)
T TIGR01730 120 AAKASLASAQLNL 132 (322)
T ss_pred HHHHHHHHHHHhh
Confidence 3334444444433
No 234
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.84 E-value=3e+02 Score=28.13 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 204 QGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 204 q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
+..+.+|+-+.+.+..-.+.+-.+++.+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444443
No 235
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.70 E-value=2.1e+02 Score=26.36 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 94 ARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 94 ~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
......-++.++...+..+..++..+..+.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777665
No 236
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=49.40 E-value=2.9e+02 Score=27.79 Aligned_cols=79 Identities=15% Similarity=0.308 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 75 AELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVV 154 (237)
Q Consensus 75 ~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~ 154 (237)
...+++...+......|......+- -..++..|+..++.+... .. ..=..+....+..+++..++..+...++.+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~--~i--k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKK--DI--KNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhc--cC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666644443332 145555555555555431 11 223445555556666666665555555544
Q ss_pred HHhh
Q psy8596 155 QADN 158 (237)
Q Consensus 155 q~~~ 158 (237)
..++
T Consensus 239 ~~~l 242 (555)
T TIGR03545 239 KNDL 242 (555)
T ss_pred HHHH
Confidence 4433
No 237
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.26 E-value=1.3e+02 Score=25.60 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLS 208 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~ 208 (237)
+..|..++...+.....|.++++........+.++|.-.=+.|.
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444555555554444443
No 238
>KOG1853|consensus
Probab=48.95 E-value=2.2e+02 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8596 99 SRLELENERLKHELERSQTTFGRTT 123 (237)
Q Consensus 99 ~qlEkEle~~qeel~e~q~~i~~~e 123 (237)
..++-+++..+.-...+...|+.++
T Consensus 94 s~Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 239
>KOG0804|consensus
Probab=48.81 E-value=2.8e+02 Score=27.43 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 90 DWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 90 ele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
+|+..+..+..+-.+......+...+.+... .....+..++.+..++..++...++.-..+..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk----~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKK----IVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555554444444444444444443332222 23455555555555555555555444333333
No 240
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.64 E-value=2.2e+02 Score=26.13 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=7.5
Q ss_pred hHhHHhhHHHHHHHHH
Q psy8596 8 SEGALSSLEEAIGDKE 23 (237)
Q Consensus 8 Te~nL~RveDil~Eve 23 (237)
|+.+|..+-++|++++
T Consensus 147 S~~dl~e~~~~l~DLe 162 (269)
T PF05278_consen 147 SESDLKEMIATLKDLE 162 (269)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 241
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.54 E-value=1.6e+02 Score=24.63 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy8596 141 CADLRRAQAELRVVQ 155 (237)
Q Consensus 141 ~~ELe~~q~~le~~q 155 (237)
..++..+...++.+.
T Consensus 137 ~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 137 DTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 242
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=48.33 E-value=3.4e+02 Score=28.31 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 162 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~ 162 (237)
...+..+..+...+...+++...-++.++-.+.-+.
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LK 621 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALK 621 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566666666666666666666666666665433
No 243
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=48.15 E-value=1.1e+02 Score=27.92 Aligned_cols=12 Identities=33% Similarity=0.221 Sum_probs=4.4
Q ss_pred HhHHHHHHHHHH
Q psy8596 216 KAVLEMDKSKEE 227 (237)
Q Consensus 216 ~~~~e~~~~~e~ 227 (237)
.+.+.++..+..
T Consensus 140 ~a~a~l~~a~~~ 151 (310)
T PRK10559 140 KAQATRDLAKLD 151 (310)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 244
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.02 E-value=1.4e+02 Score=23.76 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQ 169 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q 169 (237)
.+-+.++..+.+.+...+......+..++...+.+...+++++
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655555555554444444433
No 245
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=47.40 E-value=1.4e+02 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
..|+.++...+.+...-.++..+...+|-+++
T Consensus 40 ~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 40 QALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444444443
No 246
>KOG4673|consensus
Probab=47.17 E-value=3.6e+02 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=15.2
Q ss_pred cccChHhHHhhHHHHHHHHHHHHH
Q psy8596 4 HHCSSEGALSSLEEAIGDKEKQMN 27 (237)
Q Consensus 4 ~~~~Te~nL~RveDil~Evekql~ 27 (237)
|-|+|..|+..--|++.|..|..+
T Consensus 330 ~Rs~s~~n~~~~d~~q~eLdK~~~ 353 (961)
T KOG4673|consen 330 QRSSSATNVSDSDDVQLELDKTKK 353 (961)
T ss_pred cCCCCCccccCchhHHHHHHHHHH
Confidence 346677777776666666665443
No 247
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=46.92 E-value=1.3e+02 Score=22.89 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKA 184 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~ 184 (237)
..+.-++++..++..++.+...+.-.+.-+.+-+..++-.|...+.++.+-+.+|+.
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445556666666667777777666666666666666677777777777766666654
No 248
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=46.20 E-value=2.1e+02 Score=25.30 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 163 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 163 ~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
++...++..+..+-+++.+.++.-+.+-.+.+..+.+++++-.
T Consensus 112 ~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 112 EERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555543
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=45.86 E-value=1.5e+02 Score=23.48 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 88 GADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 88 eaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
.+.-..+..++..++..++..+..-..+...-.. +.+-++.|+.........+..++.++..+...+
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~----L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQ----LRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444322222 233333444444444444444444444443333
No 250
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=45.48 E-value=1.7e+02 Score=24.01 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 195 SMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 195 ~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
+|++.+..+.+.+.+-++.......|.+.+
T Consensus 65 ~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 65 QLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 444444444444444444444444444433
No 251
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.34 E-value=1.3e+02 Score=22.58 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVE 173 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le 173 (237)
+-++..|.++...+..+...+......+..++++++.+-..-|+.|-
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444444444444444444444433
No 252
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.27 E-value=1.6e+02 Score=23.49 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=5.0
Q ss_pred HHHHHHHhhHHHHH
Q psy8596 167 TMQEKVEKSQGEVY 180 (237)
Q Consensus 167 ~~q~~le~~q~~~~ 180 (237)
.++..++.-+..+.
T Consensus 119 ~~~~~~~~~~~~l~ 132 (140)
T PRK03947 119 KLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 253
>PRK15396 murein lipoprotein; Provisional
Probab=45.22 E-value=1.2e+02 Score=22.59 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=2.6
Q ss_pred hHHHHHH
Q psy8596 175 SQGEVYR 181 (237)
Q Consensus 175 ~q~~~~~ 181 (237)
+++|+.|
T Consensus 58 a~~eA~r 64 (78)
T PRK15396 58 AKDDAAR 64 (78)
T ss_pred HHHHHHH
Confidence 3333333
No 254
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=1.6e+02 Score=23.68 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~ 150 (237)
.+.|.++.+-+.-++..++.+
T Consensus 72 ~~eL~er~E~Le~ri~tLekQ 92 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 255
>PRK15396 murein lipoprotein; Provisional
Probab=45.05 E-value=1.3e+02 Score=22.44 Aligned_cols=38 Identities=11% Similarity=0.360 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy8596 164 EEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201 (237)
Q Consensus 164 ~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~ 201 (237)
+.+.|..+.+...+.+.-+......++.+..|.-+++|
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 256
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.02 E-value=3.2e+02 Score=27.08 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=4.4
Q ss_pred HHhhhhHHHHHH
Q psy8596 57 KLHAYESEVEEL 68 (237)
Q Consensus 57 ~~~~l~~el~~l 68 (237)
.+..++..+.++
T Consensus 190 eld~L~~ql~EL 201 (563)
T TIGR00634 190 RLDFLQFQLEEL 201 (563)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 257
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.40 E-value=2.6e+02 Score=25.82 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=89.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHH--------------HH
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------STSAELDRLQEKYDK--------------TC 141 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~q~eL~~Lqek~ek--------------l~ 141 (237)
-+..+.+.++.-......+..++..++..+..+......-+. ...-++..+.-++.. ..
T Consensus 115 ~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~ 194 (309)
T PF09728_consen 115 TLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEK 194 (309)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455555555555555666666666666666555443332 111122222222222 22
Q ss_pred H-------HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------hhhhHHHHHHHHHHhHHHH
Q psy8596 142 A-------DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN-------TQGEMESMKEEYERTQGTL 207 (237)
Q Consensus 142 ~-------ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~-------~q~~~~~~~~~~~~~q~~~ 207 (237)
. .+..+...-..++.++.-+-.-++..|.-|.+|-+=+.....+.+. .--+-..++.+++++...+
T Consensus 195 ~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 195 EILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2 2222333333344444444456888999999998766555555544 4466677888999999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 208 SRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 208 ~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
-.+-.|+-....+++.++..+++-+
T Consensus 275 ~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 275 IEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888776644
No 258
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.17 E-value=2.5e+02 Score=25.62 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8596 135 EKYDKTCADLRRAQAELRV 153 (237)
Q Consensus 135 ek~ekl~~ELe~~q~~le~ 153 (237)
.+.++-..|+++.+.+|..
T Consensus 197 ~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 259
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=43.93 E-value=2e+02 Score=24.25 Aligned_cols=128 Identities=19% Similarity=0.286 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHhhhhHHHHHHHHH
Q psy8596 94 ARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRV-VQADNERVRSEEKTMQEKV 172 (237)
Q Consensus 94 ~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~-~q~~~~~~~~~~~~~q~~l 172 (237)
.+.+...+.++|...+..+..+. .+.+.|......+...|...-..+.. .-.+.-.....+..+|-+|
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I-----------~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L 93 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVI-----------EEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRL 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554 44444444444444333332222111 1122223345688899999
Q ss_pred HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 173 EKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 173 e~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
--.+..-..|...+....-.+..+.+=+++|..-+.++-.=++=..+.|..+-..++..+
T Consensus 94 ~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 94 AMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888888888888877777665
No 260
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.90 E-value=1.6e+02 Score=23.28 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
...+..+.+-+..+|..+..+...++..+..
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e 103 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKE 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444443
No 261
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=43.62 E-value=2.9e+02 Score=26.05 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHh
Q psy8596 140 TCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 140 l~~ELe~~q~~le~~q~~~~~ 160 (237)
+...+...+..+..++.+++|
T Consensus 125 ~~a~l~~a~a~l~~a~~~~~R 145 (390)
T PRK15136 125 YQANIELQKTALAQAQSDLNR 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 262
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.38 E-value=1.2e+02 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy8596 219 LEMDKSKEELER 230 (237)
Q Consensus 219 ~e~~~~~e~le~ 230 (237)
.+|+.++++++.
T Consensus 46 ~ei~~L~~e~ee 57 (61)
T PF08826_consen 46 QEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 263
>KOG0962|consensus
Probab=43.32 E-value=5.2e+02 Score=28.94 Aligned_cols=101 Identities=23% Similarity=0.292 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh---hhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNER---VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~---~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
..+....+++..++..+++.++.......-...+ +..+....+..+..+...+.++...++..+.....+.-+..-+
T Consensus 825 ~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~ 904 (1294)
T KOG0962|consen 825 RKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKEL 904 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555443332222222 2234555566666666666677777777777777777777777
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 204 QGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 204 q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
.+.++.+-.+++.+.++.++++-+
T Consensus 905 ~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 905 LERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred HhhhcchhhhHHHHHHHHHHHHHH
Confidence 777777777777777777766655
No 264
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=43.11 E-value=2.1e+02 Score=24.43 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q psy8596 70 LGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERL---------KHELERSQTTFGRTTLSTSAELDRLQEKYDKT 140 (237)
Q Consensus 70 ~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~---------qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl 140 (237)
+...+..-.....-+.++++.+...+.++..++..+... ...-......|..+ -.+|..=+.+.+.+
T Consensus 4 l~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~----l~rLeEEqqR~~~L 79 (182)
T PF15035_consen 4 LDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEA----LIRLEEEQQRSEEL 79 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHH----HHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q psy8596 141 CADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKL 186 (237)
Q Consensus 141 ~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~l 186 (237)
..-..-+..+++.....|+.+..++..|...+..+.+++..-....
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~ 125 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEW 125 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 265
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=42.85 E-value=2.8e+02 Score=25.77 Aligned_cols=97 Identities=14% Similarity=0.256 Sum_probs=45.0
Q ss_pred HHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hh
Q psy8596 54 YKLKLHAYESEVEELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-------ST 126 (237)
Q Consensus 54 ~~~~~~~l~~el~~le~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-------~~ 126 (237)
|-..+..+.+.+..+....+.. -+..+...+...+..|..+..++...+..+..+...+..... ..
T Consensus 53 fA~~ld~~~~kl~~Ms~~ql~~-------~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~ 125 (301)
T PF06120_consen 53 FADSLDELKEKLKEMSSTQLRA-------NIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINH 125 (301)
T ss_pred HHHhhHHHHHHHHhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHH
Confidence 3344455555554442223333 334444444444555555555555555555444444333222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQAD 157 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~ 157 (237)
-..+..+..++..+..+|...+.+++.++.-
T Consensus 126 ~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k 156 (301)
T PF06120_consen 126 LMSQADATRKLAEATRELAVAQERLEQMQSK 156 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234455555555555555555555444443
No 266
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.61 E-value=1.6e+02 Score=23.11 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 176 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q 176 (237)
..+..++.....+..++..++..+..+=.+|..++-+++.|.+.|....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666666667766666677776666543
No 267
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.39 E-value=3e+02 Score=28.34 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
..-+.++.+++..+..++...+..++..+..+
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555555555555555555555544
No 268
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.03 E-value=3.2e+02 Score=26.13 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHH
Q psy8596 146 RAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKA 184 (237)
Q Consensus 146 ~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~ 184 (237)
+..+-++..|.+.++++...++|-.+|-.+++=+.+++.
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~ 127 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKG 127 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444555555555555555555554444443
No 269
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=41.86 E-value=1.9e+02 Score=25.97 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhH-----------HHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQ-----------GTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q-----------~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
+.-|..-++.--..+.+..+.|++...|++..+..|+++. +.+.-|..+.+.+...++..+..+..
T Consensus 109 l~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~ 185 (246)
T cd07618 109 LDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA 185 (246)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777888888888888888888887764 55556666777777777777666654
No 270
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=41.81 E-value=2.4e+02 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8596 94 ARQRLSRLELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 94 ~K~ei~qlEkEle~~qeel~e~q~~i~~~ 122 (237)
+..++......+...+..+..+...+...
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~ 111 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEI 111 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 271
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.24 E-value=1.9e+02 Score=23.40 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTM 168 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~ 168 (237)
.+|+.+..+.+...+=......+...++.+...+.++...+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444433333334333333333333333333
No 272
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.90 E-value=4.1e+02 Score=27.14 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=42.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
...-..=+...+..++.++...|.++..++..-+-+-. ........+|..+..++..+..++..++.++..++...
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~---~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG---NNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555554322210 01113457777777777777777777777766665544
No 273
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.69 E-value=4e+02 Score=26.85 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhh-hhhHHHHHHHHHHhHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENT-QGEMESMKEEYERTQG 205 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~-q~~~~~~~~~~~~~q~ 205 (237)
.+++..+....-+--.+|.+...++..++.+.......+..+..+|......+...-.++++| |.|..+|...|.=..+
T Consensus 197 k~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~ 276 (555)
T TIGR03545 197 KKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSG 276 (555)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcc
Confidence 455555555433444556666666665555554444444555555555555555555555543 6777777777654444
Q ss_pred HH
Q psy8596 206 TL 207 (237)
Q Consensus 206 ~~ 207 (237)
..
T Consensus 277 ~~ 278 (555)
T TIGR03545 277 DL 278 (555)
T ss_pred cH
Confidence 33
No 274
>PRK11519 tyrosine kinase; Provisional
Probab=40.59 E-value=4.1e+02 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
.-++++++++..+..++...+..+...+..+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555555555555554443
No 275
>KOG4460|consensus
Probab=40.58 E-value=4.2e+02 Score=27.11 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=50.6
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQ 148 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q 148 (237)
.+.....++..+..-..++...+++++....-+..-+.++....+....-+-..+--+.+++..+......+..=|+-+.
T Consensus 603 ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 603 DLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVT 682 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555544444444333332222222222445666777777777777777777
Q ss_pred HHHHHHHHhhHhhh
Q psy8596 149 AELRVVQADNERVR 162 (237)
Q Consensus 149 ~~le~~q~~~~~~~ 162 (237)
.+.+..++|.++..
T Consensus 683 ~~~~KQ~~H~~~v~ 696 (741)
T KOG4460|consen 683 MKKDKQQQHMEKVL 696 (741)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666666666544
No 276
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.47 E-value=1.4e+02 Score=21.53 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=24.8
Q ss_pred hHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy8596 158 NERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEY 200 (237)
Q Consensus 158 ~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~ 200 (237)
-.+++.++..|...+...+++...|..+.+.|.+-++.+=..+
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444446666666666666666666666666665554443
No 277
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=40.28 E-value=3.2e+02 Score=25.74 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHh
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEK 174 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~ 174 (237)
|-+|..+.++|.+.-++-+.+...++.-+..+...|..|.+...-+..|-+-++-.-+.-|-=+.-++.=+-.-|++|-.
T Consensus 7 k~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~ 86 (328)
T PF15369_consen 7 KRRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTM 86 (328)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66888888999999888888888888877788888999998888888888888777666666665555556667888888
Q ss_pred hHHHHHH
Q psy8596 175 SQGEVYR 181 (237)
Q Consensus 175 ~q~~~~~ 181 (237)
|-+++..
T Consensus 87 s~~~l~~ 93 (328)
T PF15369_consen 87 SLSELSA 93 (328)
T ss_pred CHHHhhh
Confidence 8877643
No 278
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.21 E-value=2.2e+02 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 199 EYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 199 ~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
+.++....+..+..+++++..+++.+++..+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 279
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.93 E-value=1.7e+02 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
+..+..+.+.+..++..+...+..+.....
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 280
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.78 E-value=3.4e+02 Score=26.88 Aligned_cols=25 Identities=48% Similarity=0.519 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 91 WEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 91 le~~K~ei~qlEkEle~~qeel~e~ 115 (237)
+.+.+.++..+..++..++.+.+++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 281
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.77 E-value=1.2e+02 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFG 120 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~ 120 (237)
...+..+.++++.+++.++.+...+.
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 282
>KOG0612|consensus
Probab=37.62 E-value=6.2e+02 Score=28.24 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q psy8596 143 DLRRAQAELRVVQADNERVRSEEKTMQE 170 (237)
Q Consensus 143 ELe~~q~~le~~q~~~~~~~~~~~~~q~ 170 (237)
.+..+++.+..+++++....-++.+++.
T Consensus 624 ~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 624 IIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 3333333333444433333333333333
No 283
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.61 E-value=4.5e+02 Score=26.57 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLS 208 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~ 208 (237)
+..+.++++.....+..+..+++..+..++.+...++.....+.
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444333
No 284
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.50 E-value=3e+02 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
+..|..-|+..-..+.+..+++++...+++..+.++.++
T Consensus 135 l~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka 173 (242)
T cd07600 135 NAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSA 173 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555666666666666677777777777777777666655
No 285
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=37.04 E-value=4.5e+02 Score=26.40 Aligned_cols=164 Identities=10% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 73 SKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELR 152 (237)
Q Consensus 73 lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le 152 (237)
+-.++..+.++..++...+..+. .+.+..+.+...-..+..=...+..+.+-....++.---...+++.+++....+++
T Consensus 269 i~~~i~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~ 347 (622)
T COG5185 269 INTDIANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIK 347 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHhhhhHHHH---HHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 153 VVQADNERVRSEEKT---MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 153 ~~q~~~~~~~~~~~~---~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
.+++..+-+...+.+ -=++.+.--.+..+|-.+|+.+-.+.+.|.......--..+-.=..+.+..-.+.-+.-.+-
T Consensus 348 ~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~ 427 (622)
T COG5185 348 ALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HhhhhhcC
Q psy8596 230 RSQATLGE 237 (237)
Q Consensus 230 ~~q~~~~~ 237 (237)
++-+++|+
T Consensus 428 ~~~~~i~~ 435 (622)
T COG5185 428 RSRSQIGH 435 (622)
T ss_pred ccHHHHhh
No 286
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.96 E-value=4.5e+02 Score=26.40 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERT 203 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~ 203 (237)
...|+..|+.+..+..-+..+|..+.....+++|+++-+
T Consensus 443 c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 443 CRALQKRLESAEKEKESLEEELKEANQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 287
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.33 E-value=1.6e+02 Score=20.93 Aligned_cols=32 Identities=9% Similarity=0.271 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
.+..+|+....+...+..+|..+..+++.+++
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33556666666666666666666666555544
No 288
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.21 E-value=2.3e+02 Score=22.86 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 93 AARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 93 ~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
.++.++..-..++..++..+..+...+..++. .+..++..+..++..+...+-+.-..++.+..
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~ 100 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRN 100 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666543 55677777777777777777666666664444
No 289
>KOG2264|consensus
Probab=35.69 E-value=1.3e+02 Score=30.78 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=29.1
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFG 120 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~ 120 (237)
++-.++.+..+++++|+.+...++++|..|.+...+++.++-.++..+-.++
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~ 145 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLE 145 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 4444555555566666666666666665555555555555555555544433
No 290
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.33 E-value=3.2e+02 Score=24.25 Aligned_cols=52 Identities=8% Similarity=0.166 Sum_probs=36.7
Q ss_pred hHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH
Q psy8596 158 NERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSR 209 (237)
Q Consensus 158 ~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~ 209 (237)
..++.+....++.++.+.-.++.+..+.-.....+.+..+.+|.++.....+
T Consensus 112 ~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k 163 (241)
T cd07656 112 SKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEK 163 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456667777777777777777777777777777777777777777553
No 291
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.20 E-value=4.4e+02 Score=25.78 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=43.5
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLR 145 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe 145 (237)
+.......+-+++-++.++.+....+..++..+-.+...+..+...+.+.-..++. .+-.+...|--...++..+-.
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~ 203 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ 203 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555666655555655555555555555555555554444442 233333344444444444444
Q ss_pred HHHHHHHHHHH
Q psy8596 146 RAQAELRVVQA 156 (237)
Q Consensus 146 ~~q~~le~~q~ 156 (237)
.+....+.+|+
T Consensus 204 ~la~r~~a~q~ 214 (499)
T COG4372 204 NLATRANAAQA 214 (499)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 292
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=34.93 E-value=1.1e+02 Score=27.10 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHH
Q psy8596 189 TQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSK 225 (237)
Q Consensus 189 ~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~ 225 (237)
|+.++-+-.+++...-.-+..--+|||.|+.+++++-
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666667777889999999999887
No 293
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.69 E-value=2e+02 Score=21.80 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADN 158 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~ 158 (237)
..++..+.....++...+..+..++..++..+
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 294
>KOG0972|consensus
Probab=34.63 E-value=4e+02 Score=25.11 Aligned_cols=121 Identities=15% Similarity=0.247 Sum_probs=63.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR 162 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~ 162 (237)
+++|--|.+ |.-+.+--+.+.-+=..++...+-|.. .+....-.++++..+|.++-++|.
T Consensus 206 EvERVlPQL---KVt~k~DakDWR~H~~QM~s~~~nIe~-------~~~~~~~~Ldklh~eit~~LEkI~---------- 265 (384)
T KOG0972|consen 206 EVERVLPQL---KVTLKQDAKDWRLHLEQMNSMHKNIEQ-------KVGNVGPYLDKLHKEITKALEKIA---------- 265 (384)
T ss_pred HHHHhhhhh---eehhccccHHHHHHHHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHHHHHHHH----------
Confidence 555555555 555555555555555555555444433 233333344444444444433322
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 163 SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 163 ~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
|--.-|-.+|+..-.++ -.++..+-.++..|..++..+..--..+|..-.|++++++++|+
T Consensus 266 SREK~lNnqL~~l~q~f-------r~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 266 SREKSLNNQLASLMQKF-------RRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333333333333 33445555667777777777777777777777777777777775
No 295
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.40 E-value=2.9e+02 Score=23.44 Aligned_cols=52 Identities=19% Similarity=0.477 Sum_probs=30.8
Q ss_pred HHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 154 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 154 ~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
++.++.++..++..|+.+.+..+.+...+.+++...+.|-+.|=.=+++|..
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666666666666666666666666666665543
No 296
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.01 E-value=1.4e+02 Score=19.74 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhhHHHHHHH
Q psy8596 163 SEEKTMQEKVEKSQGEVYRL 182 (237)
Q Consensus 163 ~~~~~~q~~le~~q~~~~~~ 182 (237)
.+++.|..+.+....++..+
T Consensus 19 ~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 19 AEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 297
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.84 E-value=3.2e+02 Score=24.48 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK 171 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~ 171 (237)
..++..++.....-..-+-.++.+|+.+|.+..+++|.++.++=+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~ 83 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQ 83 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444443333333333333444444444444433333333333
No 298
>KOG0982|consensus
Probab=33.14 E-value=4.9e+02 Score=25.71 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=72.5
Q ss_pred HHHHHHHHH---HHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q psy8596 34 DRADQERQE---ERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERL 108 (237)
Q Consensus 34 ~kaery~el---k~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~ 108 (237)
+.++|.+++ +..-..+++..+-+++..+..+.+.+ .+..+....+++..+..++...++.++.++...-+...++
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 34456677888888888998888888 8888888899999999999999999999999988888888
Q ss_pred HHHHHHHHHHhhhhhh
Q psy8596 109 KHELERSQTTFGRTTL 124 (237)
Q Consensus 109 qeel~e~q~~i~~~e~ 124 (237)
..-|-.++......+.
T Consensus 359 ~d~Lrrfq~ekeatqE 374 (502)
T KOG0982|consen 359 NDILRRFQEEKEATQE 374 (502)
T ss_pred HHHHHHHHHhhHHHHH
Confidence 8888887766665554
No 299
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=33.04 E-value=3.3e+02 Score=25.88 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy8596 144 LRRAQAELRVVQADN 158 (237)
Q Consensus 144 Le~~q~~le~~q~~~ 158 (237)
+..++..+..++.++
T Consensus 134 l~~a~a~l~~A~~~~ 148 (415)
T PRK11556 134 LAKDQATLANARRDL 148 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 300
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.80 E-value=4.8e+02 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 129 ELDRLQEKYDKTCADLRRAQAELRVVQAD 157 (237)
Q Consensus 129 eL~~Lqek~ekl~~ELe~~q~~le~~q~~ 157 (237)
.+..+..++..+..++...+.++..+++.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 301
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.75 E-value=2.1e+02 Score=28.30 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=7.6
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q psy8596 168 MQEKVEKSQGEVYRLKAKL 186 (237)
Q Consensus 168 ~q~~le~~q~~~~~~~~~l 186 (237)
++.+++...+++.+|+.++
T Consensus 102 le~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 302
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.24 E-value=3.3e+02 Score=23.43 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 132 RLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 132 ~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
.+.....++.++...+..++...-+.+.++.++...|..++-..+.+..-+..+.+..-
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD 158 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666666666666666666655555555444
No 303
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.22 E-value=3.9e+02 Score=24.28 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=52.2
Q ss_pred hhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 157 DNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 157 ~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
.+.+...+..++|..|.++-.++++.++.-+..-.+.+..+.+|.-+.+...+.-...+...+.++|..++
T Consensus 110 ~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~k~~K~~~~~~~sk~~~eK~~~K 180 (263)
T cd07678 110 VLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARLNKSDHGIFHSKASLQKLSAK 180 (263)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHH
Confidence 34445667788888888888888888888888888888888888866665545555566666777766544
No 304
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.00 E-value=35 Score=26.63 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHH
Q psy8596 131 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYR 181 (237)
Q Consensus 131 ~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~ 181 (237)
+.+...+..+..++..+..++..++..+..+......|+..|-.++.-+..
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~ 78 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADE 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHH
Confidence 333444444444444444444444444444433344444444444444433
No 305
>KOG4571|consensus
Probab=31.95 E-value=1.8e+02 Score=27.02 Aligned_cols=46 Identities=24% Similarity=0.174 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 72 KSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQT 117 (237)
Q Consensus 72 ~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~ 117 (237)
+-.++++.+.+++.-++..=+++|.+...+++||.+++.-+.....
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888999999999999999988776654
No 306
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.86 E-value=5.4e+02 Score=25.83 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHH
Q psy8596 160 RVRSEEKTMQEKVEKSQGEVYRLK 183 (237)
Q Consensus 160 ~~~~~~~~~q~~le~~q~~~~~~~ 183 (237)
-+..++-.+.++|.+..++++.++
T Consensus 491 ~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 491 MMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555556655555555543
No 307
>KOG0999|consensus
Probab=31.75 E-value=5.8e+02 Score=26.17 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=8.6
Q ss_pred hHHhhHHHHHHHHHHH
Q psy8596 10 GALSSLEEAIGDKEKQ 25 (237)
Q Consensus 10 ~nL~RveDil~Evekq 25 (237)
.+...|+++=.||++=
T Consensus 5 ~aeq~ve~lr~eierL 20 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERL 20 (772)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3445566665665543
No 308
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.53 E-value=2.6e+02 Score=22.08 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhh
Q psy8596 129 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS 175 (237)
Q Consensus 129 eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~ 175 (237)
.+..++.....+..++..++..+..+=-+|..++-+++.|.+.|...
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666666666666666666666666666777776653
No 309
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=31.43 E-value=2.6e+02 Score=22.10 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.4
Q ss_pred HHHhhhhHHHHHH
Q psy8596 56 LKLHAYESEVEEL 68 (237)
Q Consensus 56 ~~~~~l~~el~~l 68 (237)
+++.+|..-+..+
T Consensus 43 ~rv~GLe~AL~~v 55 (115)
T PF06476_consen 43 HRVAGLEKALEEV 55 (115)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 310
>KOG0612|consensus
Probab=31.10 E-value=7.9e+02 Score=27.49 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy8596 196 MKEEYER 202 (237)
Q Consensus 196 ~~~~~~~ 202 (237)
+...|++
T Consensus 668 ~e~~~e~ 674 (1317)
T KOG0612|consen 668 LEIKLER 674 (1317)
T ss_pred HHHHHHH
Confidence 4444443
No 311
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.00 E-value=2.6e+02 Score=21.88 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 73 SKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 73 lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~ 115 (237)
+..++..+..+++.+...+..+-.+...|.-|+..+++.+...
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444443
No 312
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=30.98 E-value=5.4e+02 Score=25.58 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=8.6
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q psy8596 168 MQEKVEKSQGEVYRLKAKL 186 (237)
Q Consensus 168 ~q~~le~~q~~~~~~~~~l 186 (237)
.+.+.|+++.++.+.+.+.
T Consensus 279 ~kkE~EKaq~E~~k~~Eea 297 (489)
T PF05262_consen 279 EKKEAEKAQEEAKKKQEEA 297 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445444444444443
No 313
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.96 E-value=3.5e+02 Score=23.37 Aligned_cols=40 Identities=5% Similarity=0.114 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 74 KAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELE 113 (237)
Q Consensus 74 q~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~ 113 (237)
...+..+..++..+...+..++..+..++..+...+..-.
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444433
No 314
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=30.76 E-value=1e+02 Score=28.99 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8596 88 GADWEAARQRLSRLELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 88 eaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~ 122 (237)
..++..++.++..+|.-+..++..+..+...+-.+
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdL 61 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDL 61 (326)
T ss_dssp -----------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444443
No 315
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=30.64 E-value=3.4e+02 Score=24.16 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHH--HHHHhHhHHHHHHHHHHHHHhh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRL--LSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~--~~e~d~~~~e~~~~~e~le~~q 232 (237)
+.-|+.-|+..-.++..-.+.|++...+.+..+..+.++...-.+. -.+...+.++.+...|.....+
T Consensus 121 l~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a~~~m 190 (229)
T cd07616 121 LTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEITRLLL 190 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666667777777777777777776654433332 3444445555555555444433
No 316
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=30.39 E-value=3.7e+02 Score=23.47 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=27.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHH
Q psy8596 188 NTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSK 225 (237)
Q Consensus 188 ~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~ 225 (237)
..-..+..+++.++-...+|.-|..=+..=..||+.|+
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466777777777777777777777777777777664
No 317
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.11 E-value=2.3e+02 Score=20.90 Aligned_cols=33 Identities=12% Similarity=0.392 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
..=+..+....+.+..++..+...+..+.....
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444443
No 318
>KOG2010|consensus
Probab=29.96 E-value=4.6e+02 Score=24.99 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhHhhHH--HHHHHHhhhhHHHHHH---------HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy8596 37 DQERQEERDLHERDIA--EYKLKLHAYESEVEEL---------ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELEN 105 (237)
Q Consensus 37 ery~elk~e~~~lei~--~~~~~~~~l~~el~~l---------e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEl 105 (237)
++|+..+--+-.|++. -+.+.++.|.+.|.++ +|.....+++...--++.|+..++++|..|.+-+.=|
T Consensus 126 ekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeli 205 (405)
T KOG2010|consen 126 EKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELI 205 (405)
T ss_pred HHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666543 3556677777777766 5555556666555566666666666666665544444
Q ss_pred H
Q psy8596 106 E 106 (237)
Q Consensus 106 e 106 (237)
+
T Consensus 206 e 206 (405)
T KOG2010|consen 206 E 206 (405)
T ss_pred H
Confidence 3
No 319
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=29.96 E-value=28 Score=29.49 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 140 TCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 140 l~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
+..+..++...+..++.+|+-+++++...+..|-.|+.++-.|-.+...-+--...++.++.-++.
T Consensus 20 l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~~ 85 (181)
T PF09311_consen 20 LEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESRT 85 (181)
T ss_dssp HHHCCHHHHT--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccch
Confidence 333333333344444444666666666777777666666555555555544444444444444443
No 320
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=29.64 E-value=4.6e+02 Score=24.32 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhHhhHH--HHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 37 DQERQEERDLHERDIA--EYKLKLHAYESEVEELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELER 114 (237)
Q Consensus 37 ery~elk~e~~~lei~--~~~~~~~~l~~el~~le~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e 114 (237)
++|++-+.-+-.|++. -+.+.|..|.+.+.++ ...+-.++.++.....+++..|..+..+..++..++..+..
T Consensus 91 ekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~-----eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 91 EKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL-----EETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888764 4566677777777766 22222333334444555555565556666666666666554
Q ss_pred HHHHhhhh--------hh--------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 115 SQTTFGRT--------TL--------------------------------STSAELDRLQEKYDKTCADLRRAQAELRVV 154 (237)
Q Consensus 115 ~q~~i~~~--------e~--------------------------------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~ 154 (237)
-..-|... .+ .+.-+|..|-+..+.+..++..+..+++..
T Consensus 166 rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~ 245 (302)
T PF09738_consen 166 RDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332220 00 223467777777777777777777776665
Q ss_pred HHhh
Q psy8596 155 QADN 158 (237)
Q Consensus 155 q~~~ 158 (237)
++..
T Consensus 246 ~~~~ 249 (302)
T PF09738_consen 246 QSEG 249 (302)
T ss_pred Hhcc
Confidence 5543
No 321
>KOG0976|consensus
Probab=29.24 E-value=7.5e+02 Score=26.67 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHhhHHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 36 ADQERQEERDLHERDIAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELE 113 (237)
Q Consensus 36 aery~elk~e~~~lei~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~ 113 (237)
..+||+....+.+ ++......+.-|+.....+ +...+++-+..++.+.-..+.+++....++-.++.+|+....++-
T Consensus 87 triyRrdv~llEd-dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 87 TRIYRRDVNLLED-DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 114 RSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 114 e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
..-..+..... .+..++..+-....+....+..+-.++++.--.+|+..-+.-.-|.---+-..++.+|
T Consensus 166 ~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QL-------- 237 (1265)
T KOG0976|consen 166 MIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQL-------- 237 (1265)
T ss_pred HHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhhcC
Q psy8596 191 GEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATLGE 237 (237)
Q Consensus 191 ~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~~~ 237 (237)
+..-..=.=+.++.+-+...-+.+.-+-.+++-.--.++.-.+.||+
T Consensus 238 ss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ 284 (1265)
T KOG0976|consen 238 SSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGD 284 (1265)
T ss_pred HHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 322
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.21 E-value=5.3e+02 Score=24.90 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhh
Q psy8596 51 IAEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENER----LKHELERSQTTFGRTTL 124 (237)
Q Consensus 51 i~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~----~qeel~e~q~~i~~~e~ 124 (237)
+..+...+..++.....+ .++.++.+ ++.++.-+...+++.+.+...||..+.. ++.++..+...|...+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Q psy8596 125 ----STSAELDRLQEKYDKTCADLRRAQ--AELRVVQAD 157 (237)
Q Consensus 125 ----~~q~eL~~Lqek~ekl~~ELe~~q--~~le~~q~~ 157 (237)
...++.+.+++..+.+++.|.+++ ..-..++.+
T Consensus 291 K~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e 329 (395)
T PF10267_consen 291 KMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
No 323
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.38 E-value=2.7e+02 Score=21.17 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=13.1
Q ss_pred hHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy8596 158 NERVRSEEKTMQEKVEKSQGEVYRLKAKLE 187 (237)
Q Consensus 158 ~~~~~~~~~~~q~~le~~q~~~~~~~~~le 187 (237)
.+++..+.+.++.....++.++.|.-..+.
T Consensus 40 vdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 40 IARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333344444444444455544444443
No 324
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.38 E-value=8.3e+02 Score=26.91 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8596 25 QMNQLREQRDRADQERQEERD 45 (237)
Q Consensus 25 ql~~L~~Qa~kaery~elk~e 45 (237)
.+...+.+.++++.|...-..
T Consensus 56 ~l~~~~~~~~~~~~~~~~i~~ 76 (1109)
T PRK10929 56 WLEERKGSLERAKQYQQVIDN 76 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666554444
No 325
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.36 E-value=2.9e+02 Score=21.22 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
....++.++......+...+..++.++..++..+.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666666666666666666544
No 326
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.24 E-value=2.2e+02 Score=19.88 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 98 LSRLELENERLKHELERSQTTFG 120 (237)
Q Consensus 98 i~qlEkEle~~qeel~e~q~~i~ 120 (237)
+..+++++..+...+..+...+.
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444555555555544444
No 327
>KOG3850|consensus
Probab=27.10 E-value=6e+02 Score=24.79 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 71 GKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 71 ~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~ 150 (237)
+.+.+++..|..-...++..++.++.++..--+- +-+.|.+=.-.-.+++..+..-.+--+.....++.|+.-..++
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~f---i~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeer 339 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKF---IAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEER 339 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555556666666554432222 2222211111111111122222222233333444444444444
Q ss_pred HHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHH
Q psy8596 151 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 199 (237)
Q Consensus 151 le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~ 199 (237)
..=.-++. +-.+|+-+|.-|+.+.+| |..|.+.+.++-+
T Consensus 340 vaYQsyER------aRdIqEalEscqtrisKl----El~qq~qqv~Q~e 378 (455)
T KOG3850|consen 340 VAYQSYER------ARDIQEALESCQTRISKL----ELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33333333 447888888888888755 6666655555544
No 328
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=26.95 E-value=4.7e+02 Score=23.59 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy8596 218 VLEMDKSKE 226 (237)
Q Consensus 218 ~~e~~~~~e 226 (237)
...+...+.
T Consensus 191 ~~~l~~a~~ 199 (331)
T PRK03598 191 QAALAQAEL 199 (331)
T ss_pred HHHHHHHHH
Confidence 333333333
No 329
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=26.55 E-value=4.6e+02 Score=23.33 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhHhhh--hHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhH---------HHHHHHHH
Q psy8596 144 LRRAQAELRVVQADNERVR--SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQ---------GTLSRLLS 212 (237)
Q Consensus 144 Le~~q~~le~~q~~~~~~~--~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q---------~~~~~~~~ 212 (237)
.-....+|-..+.+.+..- .=+.-|+.-|+..-..+.+..+.|++...+.+..+..|.++. +.+.++.-
T Consensus 86 ~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~e 165 (244)
T cd07595 86 CGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKD 165 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHH
Confidence 3344444444444444311 127788888888888999999999999999999999999874 66678889
Q ss_pred HHhHhHHHHHHHHHHHHHh
Q psy8596 213 ERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 213 e~d~~~~e~~~~~e~le~~ 231 (237)
|.+.+...++..++.+...
T Consensus 166 E~e~ae~k~e~~~e~~~~~ 184 (244)
T cd07595 166 EYEEAELKLEQCRDALATD 184 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887654
No 330
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.21 E-value=2.8e+02 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=24.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8596 86 RSGADWEAARQRLSRLELENERLKHELERSQTTFGRTT 123 (237)
Q Consensus 86 rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e 123 (237)
-..+.-+.-+.++.+||.++......+..++.++..+.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777664444433
No 331
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=3.9e+02 Score=22.11 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEK 171 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~ 171 (237)
..=+.++..+.+.+..-+..++..|..+=.....+.-.+++++.+
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666555555455444444454443
No 332
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=25.07 E-value=4.5e+02 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.114 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHH
Q psy8596 72 KSKAELDKAANEVGRSGADWEAAR 95 (237)
Q Consensus 72 ~lq~elek~q~E~~rleaele~~K 95 (237)
.+...+..+...+...-+..-.+.
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e 58 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELE 58 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 333
>PRK10698 phage shock protein PspA; Provisional
Probab=24.96 E-value=4.7e+02 Score=22.86 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 73 SKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 73 lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
....+..+..++....+.+..++..+..++..|...+..-..+.+.......
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666666555555443
No 334
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.95 E-value=7.7e+02 Score=25.35 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 76 ELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 76 elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
+...+..+++++.+++..+...|...+.++...-....... .++..+..+.-=+.+.-.+-......+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~-----------~~~~~~~~k~~LL~Ay~q~c~~~~~~l~ 148 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQML-----------DKISDSRHKQLLLEAYSQQCEEQRRILR 148 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHhhhhHHHHHHHHHHhhHHHHH
Q psy8596 156 ADNERVRSEEKTMQEKVEKSQGEVY 180 (237)
Q Consensus 156 ~~~~~~~~~~~~~q~~le~~q~~~~ 180 (237)
-...++++..+++|.---++.+++.
T Consensus 149 e~~~rl~~~~~~~q~~~R~a~~~v~ 173 (632)
T PF14817_consen 149 EYTKRLQGQVEQLQDIQRKAKVEVE 173 (632)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcee
No 335
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=24.60 E-value=4.6e+02 Score=22.67 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH
Q psy8596 11 ALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIA 52 (237)
Q Consensus 11 nL~RveDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~ 52 (237)
=+.||.+-+.-.+.-+.=+++ ||.=+..+-..|..+...
T Consensus 10 l~~r~~~g~~~~~el~~f~ke---Ra~iE~eYak~L~kLakk 48 (236)
T cd07651 10 IQTRIKDSLRTLEELRSFYKE---RASIEEEYAKRLEKLSRK 48 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcc
Confidence 345566665555555554443 344444445555555444
No 336
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=24.13 E-value=4.1e+02 Score=21.95 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8596 88 GADWEAARQRLSRLELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 88 eaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~ 122 (237)
..+++..+.++.....++..++.++.....+|..+
T Consensus 12 gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~L 46 (155)
T PF06810_consen 12 GKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDL 46 (155)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444
No 337
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=23.92 E-value=2.3e+02 Score=18.94 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 174 KSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 174 ~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
.+-..+..+-.+|++-..-++..-..|+++-.-....+.-++.+...++++
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345567778888898899999999999999999999999888888877654
No 338
>KOG2129|consensus
Probab=23.74 E-value=7.2e+02 Score=24.59 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=27.7
Q ss_pred HHhhHhhhhHHHHHHHHHHhhHHHH----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHH
Q psy8596 155 QADNERVRSEEKTMQEKVEKSQGEV----YRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLE 220 (237)
Q Consensus 155 q~~~~~~~~~~~~~q~~le~~q~~~----~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e 220 (237)
-.+.+.++.+.++|...|-.+|.+. ++..++-- ..+++.++.|-.+.+--.-|+..+-.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~-------~~reen~rlQrkL~~e~erRealcr~ 314 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV-------DHREENERLQRKLINELERREALCRM 314 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666665555443 22222222 23444455555555544445544433
No 339
>KOG4593|consensus
Probab=23.41 E-value=8.7e+02 Score=25.39 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---hHhHHHHHHHHHHHHH
Q psy8596 193 MESMKEEYERTQGTLSRLLSER---DKAVLEMDKSKEELER 230 (237)
Q Consensus 193 ~~~~~~~~~~~q~~~~~~~~e~---d~~~~e~~~~~e~le~ 230 (237)
..-+++++++.|+.+-++.+=. -.+.-+..+++++|.+
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~r 317 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQR 317 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3345556666666555544322 2344455555555543
No 340
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=23.30 E-value=1.7e+02 Score=27.55 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=9.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 83 EVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 83 E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
.+..++.-...+..-++-+...+..+...+..+...+..... .....+..++.....+...+..+...+..+.....
T Consensus 36 RLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS 115 (326)
T PF04582_consen 36 RLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSIS 115 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHH
Confidence 333333333333333444444444444444444444443333 22444444555555555555555555555555555
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHH
Q psy8596 160 RVRSEEKTMQEKVEKSQGEVYRL 182 (237)
Q Consensus 160 ~~~~~~~~~q~~le~~q~~~~~~ 182 (237)
.+++....+-..+.+.++.+.-+
T Consensus 116 ~Lqs~v~~lsTdvsNLksdVSt~ 138 (326)
T PF04582_consen 116 DLQSSVSALSTDVSNLKSDVSTQ 138 (326)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhhhhh
Confidence 44444444444444444444333
No 341
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=23.11 E-value=6.5e+02 Score=23.83 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 125 STSAELDRLQEKYDKTCADLRRAQ 148 (237)
Q Consensus 125 ~~q~eL~~Lqek~ekl~~ELe~~q 148 (237)
...++++..........+.+....
T Consensus 148 vs~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 148 VSREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555555555555555444444
No 342
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.84 E-value=4.8e+02 Score=22.23 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
.......+....++..++......+..++..++
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 343
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.67 E-value=6.3e+02 Score=23.50 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=62.0
Q ss_pred hhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 85 GRSGADWEA-ARQRLSRLELENERLKHELER------SQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQAD 157 (237)
Q Consensus 85 ~rleaele~-~K~ei~qlEkEle~~qeel~e------~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~ 157 (237)
..+.|.|+. +-..|..+.+.+...+..+.. +.+.+... ....+.+.++...++.+...--.++-.+=..
T Consensus 126 ~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~l----k~~~~e~~eki~~la~eaqe~he~m~k~~~~ 201 (294)
T COG1340 126 SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDEL----KKKAREIHEKIQELANEAQEYHEEMIKLFEE 201 (294)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432 334555566666555533322 22222222 3333344444444444444444444444444
Q ss_pred hHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Q psy8596 158 NERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQG 205 (237)
Q Consensus 158 ~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~ 205 (237)
.|.++.+++-+-.+.......+..+-.++-++|.++-.+...+....+
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677777777777777777777777777777666654333
No 344
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.62 E-value=9e+02 Score=25.30 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 144 LRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 144 Le~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
++++..-+.....+.+++-.+++....+++....++.++..+++.....++....+++. ..-.-+..-+..+..-+..
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~--~~~~~~~~a~~ea~~~~~~ 576 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE--RERNKKLELEKEAQEALKA 576 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhh
Q psy8596 224 SKEELERSQATL 235 (237)
Q Consensus 224 ~~e~le~~q~~~ 235 (237)
.+.+++..-..+
T Consensus 577 a~~~~~~~i~~l 588 (771)
T TIGR01069 577 LKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHH
No 345
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.50 E-value=5.3e+02 Score=22.62 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHH
Q psy8596 129 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLS 208 (237)
Q Consensus 129 eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~ 208 (237)
.+.....++.....++.++... . ....+++.+..+++++..+....-..+..+ ...+-.++..+-..+|
T Consensus 124 ~l~KaK~~Y~~~c~e~e~~~~~-------~-~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~---~~~~~~~m~~~~~~~Q 192 (261)
T cd07648 124 ALQKAKEAYHARCLELERLRRE-------N-ASPKEIEKAEAKLKKAQDEYKALVEKYNNI---RADFETKMTDSCKRFQ 192 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444555555555555544321 1 023355566666666654433333333322 2334455555665666
Q ss_pred HHHHHH
Q psy8596 209 RLLSER 214 (237)
Q Consensus 209 ~~~~e~ 214 (237)
.+-.+|
T Consensus 193 ~lEe~R 198 (261)
T cd07648 193 EIEESH 198 (261)
T ss_pred HHHHHH
Confidence 555555
No 346
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=22.29 E-value=4.1e+02 Score=21.22 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhH
Q psy8596 168 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQ 204 (237)
Q Consensus 168 ~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q 204 (237)
+.+..+....+...++..+..-+++++||+.+|+-.+
T Consensus 71 l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~ 107 (120)
T PF14931_consen 71 LKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQ 107 (120)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555556666666666666666544
No 347
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.59 E-value=7.8e+02 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=14.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 12 LSSLEEAIGDKEKQMNQLREQRDRA 36 (237)
Q Consensus 12 L~RveDil~Evekql~~L~~Qa~ka 36 (237)
+..+.-.|.|+..-++.|+.+.+.+
T Consensus 111 ~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 111 LAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444666666666666665554
No 348
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.39 E-value=7.3e+02 Score=23.79 Aligned_cols=65 Identities=28% Similarity=0.438 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGRTTL---------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNE 159 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~~e~---------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~ 159 (237)
...+..+..++..++..+.++...+..... .....+..+......+...+..+..++..++..+.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544433 22344555555555555555555555544444443
No 349
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.26 E-value=3.8e+02 Score=20.43 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKT 167 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~ 167 (237)
.+=+.++..+.+.+...+..+...+..+..+...+...+++
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655544444433
No 350
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=4.4e+02 Score=21.18 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHhhhhhhH
Q psy8596 72 KSKAELDKAANEVGRSGADW 91 (237)
Q Consensus 72 ~lq~elek~q~E~~rleael 91 (237)
.++.++..+-.+...+++.+
T Consensus 17 qLq~ql~~~~~qk~~le~qL 36 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQL 36 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444
No 351
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.68 E-value=8.5e+02 Score=24.26 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 202 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~ 202 (237)
..+++..+.+++....++.......+..+-+..+.....+..+.+.++-+ ....+++.|.+|.+.....++..+
T Consensus 226 q~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~~~edek~--aE~~kkE~EKaq~E~~k~~Eea~k 299 (489)
T PF05262_consen 226 QKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQKKEDEKL--AEEEKKEAEKAQEEAKKKQEEAKK 299 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcchhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433332222222222211 234445555555555555554433
No 352
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.22 E-value=1.7e+02 Score=16.87 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy8596 90 DWEAARQRLSRLELENERLK 109 (237)
Q Consensus 90 ele~~K~ei~qlEkEle~~q 109 (237)
+++.++.+|..++..|+...
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777776543
Done!