Query psy8596
Match_columns 237
No_of_seqs 77 out of 79
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:50:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.6 0.00021 7.2E-09 59.5 33.6 34 197-230 243-276 (284)
2 1c1g_A Tropomyosin; contractIl 98.5 0.00031 1.1E-08 58.5 33.7 42 186-227 225-266 (284)
3 1i84_S Smooth muscle myosin he 98.4 3.6E-07 1.2E-11 95.3 8.1 33 8-40 869-901 (1184)
4 1i84_S Smooth muscle myosin he 97.7 0.0001 3.4E-09 77.0 10.5 41 189-229 1065-1105(1184)
5 3na7_A HP0958; flagellar bioge 97.7 0.019 6.5E-07 49.9 22.5 102 52-155 14-117 (256)
6 3na7_A HP0958; flagellar bioge 97.6 0.015 5E-07 50.6 20.8 148 77-228 13-162 (256)
7 2v71_A Nuclear distribution pr 97.3 0.066 2.3E-06 45.1 20.2 130 82-222 49-178 (189)
8 3vkg_A Dynein heavy chain, cyt 96.9 0.4 1.4E-05 54.9 27.0 85 144-228 2016-2100(3245)
9 3vkg_A Dynein heavy chain, cyt 96.5 0.52 1.8E-05 54.0 24.3 64 169-232 2013-2076(3245)
10 2v71_A Nuclear distribution pr 96.2 0.47 1.6E-05 39.9 19.7 128 69-211 50-181 (189)
11 2dfs_A Myosin-5A; myosin-V, in 95.0 1.1 3.9E-05 46.4 18.0 14 211-224 1062-1075(1080)
12 3oja_B Anopheles plasmodium-re 94.8 0.3 1E-05 46.2 12.3 46 167-212 534-579 (597)
13 3oja_B Anopheles plasmodium-re 93.8 1.3 4.4E-05 41.8 14.4 59 170-228 523-581 (597)
14 2efr_A General control protein 93.7 2.3 7.9E-05 34.5 19.2 9 185-193 127-135 (155)
15 1x79_B RAB GTPase binding effe 92.6 2.8 9.6E-05 32.3 12.5 28 133-160 36-63 (112)
16 1ic2_A Tropomyosin alpha chain 92.6 1.9 6.6E-05 30.9 10.5 67 165-231 8-74 (81)
17 2efr_A General control protein 91.9 4.4 0.00015 32.9 22.1 123 101-223 26-151 (155)
18 3q8t_A Beclin-1; autophagy, AT 91.3 3.5 0.00012 30.6 13.0 85 128-212 11-95 (96)
19 2fxo_A Myosin heavy chain, car 91.1 4.4 0.00015 31.4 16.8 47 191-237 83-129 (129)
20 3hnw_A Uncharacterized protein 90.4 3 0.0001 33.0 10.5 58 165-222 77-134 (138)
21 3ghg_A Fibrinogen alpha chain; 89.8 3.7 0.00013 39.4 12.1 94 15-109 62-158 (562)
22 3ol1_A Vimentin; structural ge 89.2 6.2 0.00021 30.3 12.7 11 219-229 90-100 (119)
23 3s4r_A Vimentin; alpha-helix, 86.7 7.8 0.00027 28.5 11.9 39 190-228 55-93 (93)
24 3swk_A Vimentin; cytoskeleton, 86.4 7.6 0.00026 28.2 10.2 64 167-230 18-81 (86)
25 3tnu_B Keratin, type II cytosk 85.8 10 0.00034 29.3 10.6 62 88-149 35-96 (129)
26 3tnu_B Keratin, type II cytosk 85.7 11 0.00036 29.1 11.1 40 77-116 17-56 (129)
27 3u1c_A Tropomyosin alpha-1 cha 85.7 9.3 0.00032 28.4 12.8 46 71-116 12-57 (101)
28 2i1j_A Moesin; FERM, coiled-co 85.2 1.1 3.6E-05 43.4 5.7 65 165-229 393-457 (575)
29 4dk0_A Putative MACA; alpha-ha 84.5 6.8 0.00023 34.4 10.3 38 190-227 114-151 (369)
30 3q8t_A Beclin-1; autophagy, AT 84.5 10 0.00036 28.0 12.2 68 168-235 23-90 (96)
31 2v4h_A NF-kappa-B essential mo 84.5 12 0.00041 28.7 11.1 40 151-190 64-103 (110)
32 3hnw_A Uncharacterized protein 84.2 12 0.0004 29.6 10.4 10 204-213 123-132 (138)
33 3tnu_A Keratin, type I cytoske 84.1 9.9 0.00034 29.4 9.9 67 84-150 33-99 (131)
34 3u1c_A Tropomyosin alpha-1 cha 83.7 12 0.00039 27.9 14.4 20 131-150 33-52 (101)
35 3swk_A Vimentin; cytoskeleton, 83.6 11 0.00036 27.4 9.6 35 167-201 4-38 (86)
36 2fxo_A Myosin heavy chain, car 83.5 14 0.00046 28.6 16.9 57 131-187 65-121 (129)
37 3tnu_A Keratin, type I cytoske 82.7 12 0.00039 29.0 9.8 25 81-105 23-47 (131)
38 3u59_A Tropomyosin beta chain; 82.1 13 0.00045 27.5 13.0 47 178-224 45-91 (101)
39 3o0z_A RHO-associated protein 81.9 20 0.00068 29.4 20.4 27 185-211 98-124 (168)
40 3ol1_A Vimentin; structural ge 81.0 16 0.00056 27.8 13.7 49 187-235 65-117 (119)
41 1x79_B RAB GTPase binding effe 80.2 18 0.00061 27.7 12.2 30 75-104 6-35 (112)
42 3jsv_C NF-kappa-B essential mo 79.9 16 0.00056 27.1 9.3 38 153-190 44-81 (94)
43 2i1j_A Moesin; FERM, coiled-co 78.3 1.3 4.5E-05 42.7 3.4 43 167-209 409-451 (575)
44 3fpp_A Macrolide-specific effl 77.3 7.9 0.00027 33.6 8.0 22 177-198 114-135 (341)
45 3jsv_C NF-kappa-B essential mo 75.9 18 0.00061 26.9 8.2 28 183-210 60-87 (94)
46 2jee_A YIIU; FTSZ, septum, coi 75.4 21 0.0007 25.9 10.4 47 128-174 27-73 (81)
47 3nmd_A CGMP dependent protein 74.1 14 0.00049 26.2 7.0 48 130-177 21-68 (72)
48 3cve_A Homer protein homolog 1 73.8 18 0.00062 25.6 7.5 40 151-190 9-48 (72)
49 3ghg_A Fibrinogen alpha chain; 73.7 52 0.0018 31.6 12.8 72 93-175 106-188 (562)
50 2ocy_A RAB guanine nucleotide 72.8 36 0.0012 27.5 15.6 46 79-124 55-100 (154)
51 1deq_A Fibrinogen (alpha chain 72.8 59 0.002 29.9 13.2 21 6-27 39-66 (390)
52 2jee_A YIIU; FTSZ, septum, coi 72.5 25 0.00084 25.5 9.9 67 130-196 8-74 (81)
53 3s4r_A Vimentin; alpha-helix, 70.7 28 0.00097 25.4 12.3 70 128-199 23-92 (93)
54 3cvf_A Homer-3, homer protein 70.5 27 0.00092 25.1 8.0 16 213-228 56-71 (79)
55 1go4_E MAD1 (mitotic arrest de 70.5 25 0.00085 26.4 8.0 33 128-160 12-44 (100)
56 2eqb_B RAB guanine nucleotide 66.8 37 0.0013 25.3 11.2 56 69-124 13-68 (97)
57 2e7s_A RAB guanine nucleotide 66.6 14 0.00048 29.3 6.2 45 80-124 44-88 (135)
58 1go4_E MAD1 (mitotic arrest de 64.4 43 0.0015 25.1 9.2 64 89-152 12-92 (100)
59 1wt6_A Myotonin-protein kinase 64.3 38 0.0013 24.5 8.3 31 127-157 44-74 (81)
60 2no2_A HIP-I, huntingtin-inter 63.7 44 0.0015 25.1 14.5 51 170-220 47-97 (107)
61 4gkw_A Spindle assembly abnorm 62.0 58 0.002 25.8 13.0 74 97-181 12-85 (167)
62 3cve_A Homer protein homolog 1 61.0 41 0.0014 23.7 9.9 40 129-168 8-47 (72)
63 2ocy_A RAB guanine nucleotide 60.6 64 0.0022 25.9 19.4 66 87-153 4-69 (154)
64 2b9c_A Striated-muscle alpha t 58.8 66 0.0023 25.4 12.2 69 133-201 43-111 (147)
65 3mq7_A Bone marrow stromal ant 57.7 63 0.0022 24.9 11.8 73 87-166 30-102 (121)
66 3cvf_A Homer-3, homer protein 57.5 50 0.0017 23.7 9.2 45 128-172 13-57 (79)
67 3m91_A Proteasome-associated A 56.7 38 0.0013 22.3 6.0 35 196-230 14-48 (51)
68 4h22_A Leucine-rich repeat fli 56.5 61 0.0021 24.4 9.8 62 151-212 16-79 (103)
69 2no2_A HIP-I, huntingtin-inter 55.0 64 0.0022 24.2 14.4 24 167-190 58-81 (107)
70 1wt6_A Myotonin-protein kinase 55.0 51 0.0017 23.8 6.9 41 134-174 30-70 (81)
71 1deq_A Fibrinogen (alpha chain 52.3 1.4E+02 0.0049 27.4 15.3 23 129-151 135-157 (390)
72 3trt_A Vimentin; cytoskeleton, 51.0 57 0.002 22.4 9.4 16 15-30 7-22 (77)
73 3nmd_A CGMP dependent protein 49.6 53 0.0018 23.2 6.2 45 71-115 22-66 (72)
74 3mq7_A Bone marrow stromal ant 49.6 87 0.003 24.1 12.0 27 172-198 73-99 (121)
75 2pms_C Pneumococcal surface pr 49.2 91 0.0031 24.2 8.4 23 168-190 66-88 (125)
76 2zqm_A Prefoldin beta subunit 49.1 74 0.0025 23.2 12.9 84 77-160 8-102 (117)
77 4gkw_A Spindle assembly abnorm 47.8 1E+02 0.0035 24.4 18.9 19 73-91 16-34 (167)
78 2eqb_B RAB guanine nucleotide 46.4 88 0.003 23.2 12.2 25 204-228 68-92 (97)
79 3m9b_A Proteasome-associated A 46.4 30 0.001 30.1 5.4 40 193-232 56-95 (251)
80 3m91_A Proteasome-associated A 45.7 61 0.0021 21.2 6.2 33 155-187 15-47 (51)
81 3mq9_A Bone marrow stromal ant 45.7 1.7E+02 0.0058 26.3 12.5 27 95-121 396-422 (471)
82 3oja_A Leucine-rich immune mol 45.4 1.7E+02 0.006 26.4 15.4 40 186-225 430-469 (487)
83 1fxk_A Prefoldin; archaeal pro 44.9 83 0.0028 22.5 10.9 80 80-159 6-96 (107)
84 2akf_A Coronin-1A; coiled coil 44.3 47 0.0016 19.5 4.3 26 195-220 3-28 (32)
85 2yy0_A C-MYC-binding protein; 42.2 57 0.002 21.4 5.2 33 89-121 19-51 (53)
86 3oja_A Leucine-rich immune mol 42.0 2E+02 0.0068 26.0 14.8 23 178-200 450-472 (487)
87 3mq9_A Bone marrow stromal ant 41.7 2E+02 0.0067 25.9 14.6 24 97-120 444-467 (471)
88 3qh9_A Liprin-beta-2; coiled-c 40.4 1E+02 0.0035 22.2 8.4 19 167-185 58-76 (81)
89 1use_A VAsp, vasodilator-stimu 37.6 41 0.0014 21.6 3.7 27 5-31 2-29 (45)
90 1fxk_A Prefoldin; archaeal pro 36.8 1.1E+02 0.0039 21.8 10.7 12 80-91 20-31 (107)
91 3l4q_C Phosphatidylinositol 3- 35.8 1.8E+02 0.006 23.7 14.1 53 71-123 13-65 (170)
92 3a7p_A Autophagy protein 16; c 34.8 1.8E+02 0.006 23.3 11.0 19 132-150 72-90 (152)
93 2v66_B Nuclear distribution pr 34.6 1.5E+02 0.0051 22.5 15.2 52 95-146 9-60 (111)
94 2v66_B Nuclear distribution pr 33.8 1.5E+02 0.0053 22.4 14.0 25 127-151 76-100 (111)
95 2b9c_A Striated-muscle alpha t 33.8 1.7E+02 0.0059 23.0 11.0 29 162-190 86-114 (147)
96 3iox_A AGI/II, PA; alpha helix 32.4 3.3E+02 0.011 25.8 12.5 16 128-143 16-31 (497)
97 1l8d_A DNA double-strand break 29.4 1.6E+02 0.0055 21.2 12.6 31 85-115 13-43 (112)
98 4emc_A Monopolin complex subun 28.2 2.4E+02 0.0081 23.4 7.8 49 73-121 11-59 (190)
99 3w03_C DNA repair protein XRCC 28.0 1E+02 0.0035 25.4 5.6 34 140-173 150-183 (184)
100 4e61_A Protein BIM1; EB1-like 27.1 2E+02 0.0069 21.6 7.5 45 178-222 5-49 (106)
101 2yy0_A C-MYC-binding protein; 26.8 1.2E+02 0.0041 19.8 4.7 24 192-215 20-43 (53)
102 3iox_A AGI/II, PA; alpha helix 26.6 4.2E+02 0.014 25.1 15.4 53 103-155 9-61 (497)
103 1m1j_A Fibrinogen alpha subuni 25.2 4.4E+02 0.015 24.9 14.4 90 72-175 90-189 (491)
104 3iv1_A Tumor susceptibility ge 24.7 1.9E+02 0.0065 20.5 9.2 24 206-229 47-70 (78)
105 1x8y_A Lamin A/C; structural p 24.7 1.9E+02 0.0064 20.5 7.3 38 75-112 42-79 (86)
106 3fx0_A NF-kappa-B essential mo 24.5 47 0.0016 24.7 2.6 73 111-187 18-93 (96)
107 1jcd_A Major outer membrane li 24.3 1.6E+02 0.0053 19.3 7.2 6 175-180 37-42 (52)
108 1kd8_B GABH BLL, GCN4 acid bas 24.1 1.3E+02 0.0044 18.3 4.8 31 85-115 4-34 (36)
109 1kd8_A GABH AIV, GCN4 acid bas 24.0 1.3E+02 0.0044 18.3 4.3 31 85-115 4-34 (36)
110 3htk_A Structural maintenance 23.8 1.5E+02 0.0052 19.1 7.8 25 88-112 25-49 (60)
111 4h22_A Leucine-rich repeat fli 23.3 2.4E+02 0.0081 21.1 9.6 77 131-207 5-81 (103)
112 3q0x_A Centriole protein; cent 22.4 3E+02 0.01 23.3 7.7 49 126-174 169-217 (228)
113 2zdi_C Prefoldin subunit alpha 20.8 2.9E+02 0.0098 21.2 9.5 96 75-170 9-140 (151)
114 2pms_C Pneumococcal surface pr 20.5 3E+02 0.01 21.3 9.2 22 101-122 11-32 (125)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.57 E-value=0.00021 Score=59.51 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 197 KEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 197 ~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
...+......+..+...+..+...+..+..+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 243 ERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334434333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.50 E-value=0.00031 Score=58.46 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=16.2
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 186 LENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 186 le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
+......+..+...+..+...+..+...+..+...+..+...
T Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
T 1c1g_A 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444433333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.41 E-value=3.6e-07 Score=95.26 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 8 SEGALSSLEEAIGDKEKQMNQLREQRDRADQER 40 (237)
Q Consensus 8 Te~nL~RveDil~Evekql~~L~~Qa~kaery~ 40 (237)
++.+|.++++.+.+++..+..|+.+...+..+.
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998888877543
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.74 E-value=0.0001 Score=76.96 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 189 TQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 189 ~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
...++..++.++.........+...+.....++..++.+++
T Consensus 1065 le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le 1105 (1184)
T 1i84_S 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105 (1184)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.67 E-value=0.019 Score=49.94 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhHHHHHH--HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy8596 52 AEYKLKLHAYESEVEEL--ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAE 129 (237)
Q Consensus 52 ~~~~~~~~~l~~el~~l--e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~e 129 (237)
+.+...+..+......+ ++..+...+..+...+..+...+..+...+..++.++...+..+.++...++.. ....+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v--~~~kE 91 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI--KSERE 91 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSSSH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCHHH
Confidence 33334444444444444 555555555555555555555555555555555555555555555555555432 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
++.+....+.+..++..+...+..+-
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.61 E-value=0.015 Score=50.63 Aligned_cols=148 Identities=12% Similarity=0.177 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 77 LDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQA 156 (237)
Q Consensus 77 lek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~ 156 (237)
+..+.+.+.++.+.+..+..++..++.++..++..+..+...+... ...+..++.........+.+.+.++..+.+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~----~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~ 88 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLAL----KLQVSKNEQTLQDTNAKIASIQKKMSEIKS 88 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3344445555555555555555555555555555555554444433 233333333333333344444443333221
Q ss_pred --hhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 157 --DNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 157 --~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
+..-+..+++.+.........++-.+-..++..+..+..+...+...+..+.....++|....++++-...+
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122334444444444444445555555666666666666666666666666666666666555544443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.27 E-value=0.066 Score=45.08 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=59.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy8596 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERV 161 (237)
Q Consensus 82 ~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~ 161 (237)
.++..++.....++..+..+..++...+..+..+.+......+.++.++..+......+...|+.+...-..+-...--.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45555555555556666666666666666666665554444445555555555555555555544433322222211113
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHH
Q psy8596 162 RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMD 222 (237)
Q Consensus 162 ~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~ 222 (237)
++-++-+..++..+-...-=|..+|+ +-+.++..++||.-|...+..|+.
T Consensus 129 ~~SleD~e~kln~aiEr~alLE~El~-----------EKe~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 129 IMSLEDFEQRLNQAIERNAFLESELD-----------EKESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHCCC---------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666655555555553 122334455555554444444443
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.88 E-value=0.4 Score=54.89 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 144 LRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 144 Le~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
+..++.++..+++.+...+..+..+..+|...+.+...+-.+-+..+.+++..+.++++|..-+.-|-.|+..=...+..
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 33344444444444444444444444444444444444444444444555555555555555555555555554444444
Q ss_pred HHHHH
Q psy8596 224 SKEEL 228 (237)
Q Consensus 224 ~~e~l 228 (237)
++..+
T Consensus 2096 l~~~~ 2100 (3245)
T 3vkg_A 2096 FNTQM 2100 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.48 E-value=0.52 Score=54.00 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 169 QEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 169 q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
..+|..++.++....++|..++..+..+.+++...+......-.|......+++.+..+|+++.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444555555555555554
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.19 E-value=0.47 Score=39.88 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=52.4
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELE----NERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADL 144 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkE----le~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~EL 144 (237)
++.........+...+.++..+++..|..+.....+ +..++.++..+..... .+...+..|+...+-+....
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~----~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE----QLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHH
Confidence 445555555555555566666665555555444444 3333333332222222 33455555555555555555
Q ss_pred HHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHH
Q psy8596 145 RRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLL 211 (237)
Q Consensus 145 e~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~ 211 (237)
+....-+..+.+-+...-..+.=|.++|+ +.+..+...++|++++--....+.-++
T Consensus 126 R~~~~SleD~e~kln~aiEr~alLE~El~-----------EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 126 RATIMSLEDFEQRLNQAIERNAFLESELD-----------EKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHCCC------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555443333333333333 234445555566665554444444333
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.95 E-value=1.1 Score=46.40 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=6.4
Q ss_pred HHHHhHhHHHHHHH
Q psy8596 211 LSERDKAVLEMDKS 224 (237)
Q Consensus 211 ~~e~d~~~~e~~~~ 224 (237)
..+++....|+++.
T Consensus 1062 ~~~~~~~~~~~~~~ 1075 (1080)
T 2dfs_A 1062 VEETKQLELDLNDE 1075 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.78 E-value=0.3 Score=46.21 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q psy8596 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~ 212 (237)
..+++++..+.+..++...++..+..+..++.+...+-..+..+..
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444433
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.84 E-value=1.3 Score=41.84 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 170 EKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 170 ~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
.++...+..+..+..++++.+.+.+.+...++..+..+.++..|......++.++.+++
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444445555555666666666666666666666666666666666666555544
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.72 E-value=2.3 Score=34.51 Aligned_cols=9 Identities=0% Similarity=0.342 Sum_probs=3.2
Q ss_pred HHHhhhhhH
Q psy8596 185 KLENTQGEM 193 (237)
Q Consensus 185 ~le~~q~~~ 193 (237)
+|..+-.++
T Consensus 127 eLd~tl~el 135 (155)
T 2efr_A 127 EMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 15
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=92.59 E-value=2.8 Score=32.29 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 133 LQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 133 Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
+..+.+....++..+...+....+.+..
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~ 63 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEE 63 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 16
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.58 E-value=1.9 Score=30.87 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERS 231 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~ 231 (237)
.+.|.-+.+.+...+..+..++..+-......-.++.-.+--++.+..++|.+...|.....+|+.+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555556666666666665555555543
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.85 E-value=4.4 Score=32.87 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHH
Q psy8596 101 LELENERLKHELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQG 177 (237)
Q Consensus 101 lEkEle~~qeel~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~ 177 (237)
++.+|++.-..+..+.+.+..++. ...+.+..|+-...+....-.....+|+.+...+...-.-++----.+.+.+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544 33344555555555555555555555555544444322222233333344444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHH
Q psy8596 178 EVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDK 223 (237)
Q Consensus 178 ~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~ 223 (237)
.+.++-.+|.........+.++++.+-..+.-++...+-...++-.
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4555555555555555555566665555555555555555444443
No 18
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.26 E-value=3.5 Score=30.63 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTL 207 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~ 207 (237)
.+|..+......+..+|..+...-..+-+++..+..+..++-..=++--.+..-.+..+-..+-++.++..+|.-+++++
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444455555555666666666666666666
Q ss_pred HHHHH
Q psy8596 208 SRLLS 212 (237)
Q Consensus 208 ~~~~~ 212 (237)
.+|++
T Consensus 91 dkL~K 95 (96)
T 3q8t_A 91 DKLKK 95 (96)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 65543
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.06 E-value=4.4 Score=31.42 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhhcC
Q psy8596 191 GEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATLGE 237 (237)
Q Consensus 191 ~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~~~ 237 (237)
..+.-+.+.++.--.....|..+..++..++..++..++--..++.|
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l~K 129 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444455555556666677777777778888888887776666654
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.42 E-value=3 Score=33.04 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMD 222 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~ 222 (237)
.+.|...++.-..++|.++.+|-.++..++.+..++++.+..+..|+.+.-++.+++.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555566666666665555555555555555555555555554443
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.79 E-value=3.7 Score=39.40 Aligned_cols=94 Identities=7% Similarity=0.103 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH---HHHhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhhH
Q psy8596 15 LEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYK---LKLHAYESEVEELELGKSKAELDKAANEVGRSGADW 91 (237)
Q Consensus 15 veDil~Evekql~~L~~Qa~kaery~elk~e~~~lei~~~~---~~~~~l~~el~~le~~~lq~elek~q~E~~rleael 91 (237)
|...|.+++.+|..+..=.+-+..|.....++-+-.+.... +.|..+..+|.. .+.-++.+++..-..+..|+..|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRR-rIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRS-RIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888866667777776666665544444333 222222222211 55556666666556777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8596 92 EAARQRLSRLELENERLK 109 (237)
Q Consensus 92 e~~K~ei~qlEkEle~~q 109 (237)
+....+|.+||..|.-.-
T Consensus 141 edq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 141 RAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777665443
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.20 E-value=6.2 Score=30.27 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy8596 219 LEMDKSKEELE 229 (237)
Q Consensus 219 ~e~~~~~e~le 229 (237)
..++-++++|.
T Consensus 90 ~~iesL~eEl~ 100 (119)
T 3ol1_A 90 RKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 23
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.66 E-value=7.8 Score=28.54 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 190 QGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 190 q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
.+.+..++..++.+.....++..++|+...+++.+|.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 466778888888888888888888888888888887764
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.42 E-value=7.6 Score=28.18 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=26.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
++..++++++..+...+.+.|.-..-...+...+-.....+--.=.-+=.....++-+++++.+
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333332222222222222222233345556666666654
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.80 E-value=10 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 88 GADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQA 149 (237)
Q Consensus 88 eaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~ 149 (237)
..++..++-.+..++.++..++.....+...|...+......+..++.....+..++.++..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33344444444444444444444444444444444333334444444444444444443333
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.67 E-value=11 Score=29.13 Aligned_cols=40 Identities=20% Similarity=0.450 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 77 LDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQ 116 (237)
Q Consensus 77 lek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q 116 (237)
+..++..+.+-...+...+.++..+...+..++-++..+.
T Consensus 17 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 17 YEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555554444444444444444443
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.66 E-value=9.3 Score=28.44 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 71 GKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQ 116 (237)
Q Consensus 71 ~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q 116 (237)
..++.+.+.+...+..++..+..+..+....+.++..+++.+..+.
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555554444
No 28
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.25 E-value=1.1 Score=43.42 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 165 EKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 165 ~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
.++|...-.++..+-.+|..++-.++....++.++.++--....+++.++-.|+.-..+++++|-
T Consensus 393 ~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 393 MQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566666666666666666666666666666666666666666666666553
No 29
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=84.53 E-value=6.8 Score=34.40 Aligned_cols=38 Identities=8% Similarity=0.228 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHH
Q psy8596 190 QGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEE 227 (237)
Q Consensus 190 q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~ 227 (237)
+.+++..+..|..+++.+..++..+..+...+...+..
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~ 151 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETN 151 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 30
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.48 E-value=10 Score=28.02 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhh
Q psy8596 168 MQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATL 235 (237)
Q Consensus 168 ~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q~~~ 235 (237)
+-.+|.....+-..+..+++..+.+..++..+-++-.....-++...-.+..++.-+.-.+.-++++|
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443333333333333333444444444444444444443
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.46 E-value=12 Score=28.66 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=17.0
Q ss_pred HHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 151 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 151 le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
+..++++.+=+++|+..=.+.-|+.+|+..+|+.+++..|
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444333
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.24 E-value=12 Score=29.59 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy8596 204 QGTLSRLLSE 213 (237)
Q Consensus 204 q~~~~~~~~e 213 (237)
+..+.+|+++
T Consensus 123 ~~~~~~le~~ 132 (138)
T 3hnw_A 123 QKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.13 E-value=9.9 Score=29.42 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 84 VGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 84 ~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~ 150 (237)
+.....++..++-.+..++.++..++.....+...|...+......+..++.....+..++.++...
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555555544444445555555544444444444443
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.68 E-value=12 Score=27.91 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8596 131 DRLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 131 ~~Lqek~ekl~~ELe~~q~~ 150 (237)
..+.....+.-.++..++.+
T Consensus 33 k~~e~~~~~~E~Ei~sL~kk 52 (101)
T 3u1c_A 33 KAAEERSKQLEDDIVQLEKQ 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 33333333333333333333
No 35
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.59 E-value=11 Score=27.41 Aligned_cols=35 Identities=11% Similarity=0.352 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy8596 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~ 201 (237)
.|+.+++.+..+-.++..++.|++..++.++.+|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.51 E-value=14 Score=28.58 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy8596 131 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 187 (237)
Q Consensus 131 ~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le 187 (237)
....+...++...-..+...+..+...++..-..+..|...-.+.++++.-+...++
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555554544444444555555555555554444443
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.70 E-value=12 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=2.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH
Q psy8596 81 ANEVGRSGADWEAARQRLSRLELEN 105 (237)
Q Consensus 81 q~E~~rleaele~~K~ei~qlEkEl 105 (237)
+..+.+-...+...+.+|..+...+
T Consensus 23 ~~~~~~~~~~l~~~k~Ei~elrr~i 47 (131)
T 3tnu_A 23 NREVATNSELVQSGKSEISELRRTM 47 (131)
T ss_dssp ------------------CHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333333
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.14 E-value=13 Score=27.45 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHH
Q psy8596 178 EVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKS 224 (237)
Q Consensus 178 ~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~ 224 (237)
++.-++.++-..+.+++.+.+.+..++..+..--+-++.|.+++.-|
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444333
No 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.88 E-value=20 Score=29.37 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=11.6
Q ss_pred HHHhhhhhHHHHHHHHHHhHHHHHHHH
Q psy8596 185 KLENTQGEMESMKEEYERTQGTLSRLL 211 (237)
Q Consensus 185 ~le~~q~~~~~~~~~~~~~q~~~~~~~ 211 (237)
.....+.++++++..+.++.....+|+
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.97 E-value=16 Score=27.82 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=29.0
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHH----HHHHHhhhhh
Q psy8596 187 ENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSK----EELERSQATL 235 (237)
Q Consensus 187 e~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~----e~le~~q~~~ 235 (237)
..+-.++..++..++.+--.-..|....+....||.=+| +++...|+++
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456666666666655555556667777777776654 3555555443
No 41
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=80.19 E-value=18 Score=27.74 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8596 75 AELDKAANEVGRSGADWEAARQRLSRLELE 104 (237)
Q Consensus 75 ~elek~q~E~~rleaele~~K~ei~qlEkE 104 (237)
+++++++.+...+..++++.......++..
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=79.89 E-value=16 Score=27.13 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=14.7
Q ss_pred HHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 153 VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 153 ~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
.++++.+=++.|+..=.+.-|+..|+..+|+..+...|
T Consensus 44 vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 44 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333333433333333333333333333333333
No 43
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.26 E-value=1.3 Score=42.75 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=4.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHH
Q psy8596 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSR 209 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~ 209 (237)
.|..++...+..+.+|..+.+.--.+..+++.++..|+.....
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~ 451 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDE 451 (575)
T ss_dssp ---------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 44
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=77.25 E-value=7.9 Score=33.64 Aligned_cols=22 Identities=5% Similarity=0.199 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHH
Q psy8596 177 GEVYRLKAKLENTQGEMESMKE 198 (237)
Q Consensus 177 ~~~~~~~~~le~~q~~~~~~~~ 198 (237)
.++......+..++.++..++.
T Consensus 114 ~~~~~a~~~~~~~~a~l~~~~a 135 (341)
T 3fpp_A 114 QDLDNAATEMAVKQAQIGTIDA 135 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=75.85 E-value=18 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=11.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHH
Q psy8596 183 KAKLENTQGEMESMKEEYERTQGTLSRL 210 (237)
Q Consensus 183 ~~~le~~q~~~~~~~~~~~~~q~~~~~~ 210 (237)
.+-+|.++++-+.|.+.+..++..+.+|
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.38 E-value=21 Score=25.88 Aligned_cols=47 Identities=19% Similarity=0.420 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEK 174 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~ 174 (237)
-++..|.++...+..+...+......+..++.+++.+...-++.|..
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444344433333
No 47
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.15 E-value=14 Score=26.16 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQG 177 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~ 177 (237)
+..|+.-+.+.-.+|......++.+...++..-.++..|+.+|++-++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666666667777777777777666666667777777766543
No 48
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.80 E-value=18 Score=25.57 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=16.6
Q ss_pred HHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 151 LRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 151 le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
+..+-..|..+.+.+..++..|+.|++.-.++++++..+.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443333444444444444444444444444443
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.69 E-value=52 Score=31.61 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh---------
Q psy8596 93 AARQRLS-RLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR--------- 162 (237)
Q Consensus 93 ~~K~ei~-qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~--------- 162 (237)
....++. .|+..+.+++..+.... .+|+-|+..++.+..+|.+++..|...--.=.-.|
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQl-----------snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd 174 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKV-----------QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVD 174 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecc
Confidence 3344444 55555555555555443 55666666666667777776666543221111122
Q ss_pred -hHHHHHHHHHHhh
Q psy8596 163 -SEEKTMQEKVEKS 175 (237)
Q Consensus 163 -~~~~~~q~~le~~ 175 (237)
..++.+|.+|+..
T Consensus 175 ~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 175 LKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 3577888887754
No 50
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.84 E-value=36 Score=27.45 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 79 KAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 79 k~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
....++.++...+...+..-...+.....+..+++.+.+.+..=-|
T Consensus 55 ~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 100 (154)
T 2ocy_A 55 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 100 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777778888888888888888888776444
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.77 E-value=59 Score=29.94 Aligned_cols=21 Identities=14% Similarity=0.498 Sum_probs=15.5
Q ss_pred cChHhHHhh-------HHHHHHHHHHHHH
Q psy8596 6 CSSEGALSS-------LEEAIGDKEKQMN 27 (237)
Q Consensus 6 ~~Te~nL~R-------veDil~Evekql~ 27 (237)
|. +.|+.. |.++|.+.++.++
T Consensus 39 C~-DeDwG~kCPsGCrLqg~Ldk~er~~~ 66 (390)
T 1deq_A 39 CS-DEDWNTKCPSGCRMKGLIDEVDQDFT 66 (390)
T ss_pred Cc-hhhccCCCCccchHHHHHHHhhhhHH
Confidence 44 888887 8888888775543
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.54 E-value=25 Score=25.47 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Q psy8596 130 LDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESM 196 (237)
Q Consensus 130 L~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~ 196 (237)
++.|+.|...+-.-|.-++-+++.+.-.|..+..+.+.++..-+....+..+++.+.-+-|.-+..+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555554444444444444444445555555555444444433
No 53
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.73 E-value=28 Score=25.44 Aligned_cols=70 Identities=11% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEE 199 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~ 199 (237)
...++|+.....+..++......- .-..-.-..+++..|+..++.+..+-.++..++.+.+.+++.++.+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555554443321 1011111234566666666666666666666666666666666554
No 54
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.54 E-value=27 Score=25.10 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=7.1
Q ss_pred HHhHhHHHHHHHHHHH
Q psy8596 213 ERDKAVLEMDKSKEEL 228 (237)
Q Consensus 213 e~d~~~~e~~~~~e~l 228 (237)
-+|.-..||..++..|
T Consensus 56 ~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 56 LLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3444444444444443
No 55
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=70.45 E-value=25 Score=26.40 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNER 160 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~ 160 (237)
+.+..+..+.+.+..|-.++..++..+-+.+++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 56
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.81 E-value=37 Score=25.31 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=37.4
Q ss_pred HhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 69 e~~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
++..+..++.....++.++...+...+..-...+.....+..+++.+.+.+..=-|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666667777777777777777777777777777777777665433
No 57
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.56 E-value=14 Score=29.26 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~ 124 (237)
...++.++...+...+..-...|.....+..+++.+.+.+..=-|
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN 88 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 88 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555666666667777777777766665433
No 58
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.39 E-value=43 Score=25.10 Aligned_cols=64 Identities=28% Similarity=0.352 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 89 ADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-----------------STSAELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 89 aele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-----------------~~q~eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
..|..++.+|..++.+..++++....+...|+.... -...-.+......+++..|++++...+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888888877332 012233344566666666666665554
Q ss_pred H
Q psy8596 152 R 152 (237)
Q Consensus 152 e 152 (237)
.
T Consensus 92 ~ 92 (100)
T 1go4_E 92 R 92 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 59
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=64.32 E-value=38 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAELRVVQAD 157 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~ 157 (237)
+++|+....+...+..+++++..+++.++++
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555666666666666666666655543
No 60
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=63.70 E-value=44 Score=25.08 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHH
Q psy8596 170 EKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLE 220 (237)
Q Consensus 170 ~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e 220 (237)
.+++.....+..++.+|+....++..++..++.++..-..+-+.++..+.|
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555556666665555555555555444333
No 61
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=62.03 E-value=58 Score=25.83 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhH
Q psy8596 97 RLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 176 (237)
Q Consensus 97 ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q 176 (237)
.+..++..+..++.++.+.+ .+|+-...=+..-.+...+++.+-...|-++.+++.++..+|-.+++++
T Consensus 12 ~ia~L~~D~~s~~~eleEnq-----------eEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQ-----------EELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45667777777777777775 4444445555555666777777777778888888888888888888888
Q ss_pred HHHHH
Q psy8596 177 GEVYR 181 (237)
Q Consensus 177 ~~~~~ 181 (237)
+.+-|
T Consensus 81 ~~Lkr 85 (167)
T 4gkw_A 81 QLLKR 85 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 62
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=61.03 E-value=41 Score=23.74 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHH
Q psy8596 129 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTM 168 (237)
Q Consensus 129 eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~ 168 (237)
+|..+..+...+...+..++..++..+...++.+.++.++
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333333333333
No 63
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.57 E-value=64 Score=25.91 Aligned_cols=66 Identities=8% Similarity=0.150 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 87 SGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRV 153 (237)
Q Consensus 87 leaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~ 153 (237)
|...+-.+-.+...++-.|...+..+......++.++.. ..+++.+.........++.++...+..
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~-r~~~~~l~~~~~~~~~e~~~L~~~l~~ 69 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQL-KEDYNTLKRELSDRDDEVKRLREDIAK 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445556666677777888888888888777777776541 233443433333344444444433333
No 64
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=58.76 E-value=66 Score=25.45 Aligned_cols=69 Identities=13% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy8596 133 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201 (237)
Q Consensus 133 Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~ 201 (237)
|+.+...--..+..+..+++.+..-.+..-..++-..-+|.-..+++.|.-...+.+-+-...|.+++.
T Consensus 43 lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 43 IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444333322233333333333344444443344444443334443333
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.72 E-value=63 Score=24.91 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHH
Q psy8596 87 SGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEK 166 (237)
Q Consensus 87 leaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~ 166 (237)
++..+..+..-+...+.....+...+-.+...+..-.... +.+...+.+||..+..+|...-++.++++.+.+
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~-------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG-------QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3344444445555555555555555555554444432211 333444444444444444444444444444443
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.52 E-value=50 Score=23.67 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHH
Q psy8596 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKV 172 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~l 172 (237)
.+|..+..+...+...+..++..++..+...++.+.++.++.+.|
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333333
No 67
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=56.66 E-value=38 Score=22.27 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy8596 196 MKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230 (237)
Q Consensus 196 ~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~ 230 (237)
++..+..+-..+.+|-.-+..|..+|..+++++++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666667777777777777664
No 68
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.51 E-value=61 Score=24.39 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHhhHhh--hhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Q psy8596 151 LRVVQADNERV--RSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212 (237)
Q Consensus 151 le~~q~~~~~~--~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~ 212 (237)
+-.+|-||++. .++.+.|.-.|+-....+..++.++..--.++++++-.....+..+.-++.
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666663 377888888888888888888888888888888888777777776666553
No 69
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.01 E-value=64 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=9.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 167 TMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~le~~q 190 (237)
.++.+|+..-.++..++..++.++
T Consensus 58 ~lk~eL~~~~~el~~lq~~l~~~~ 81 (107)
T 2no2_A 58 SLKQELATSQRELQVLQGSLETSA 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 70
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.99 E-value=51 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHh
Q psy8596 134 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEK 174 (237)
Q Consensus 134 qek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~ 174 (237)
.+++.+..+..-..+.+++.+.+.|..+..+++++.++++.
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555444444444444443
No 71
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.34 E-value=1.4e+02 Score=27.39 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 129 ELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 129 eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
.|+.|+..++....+|.+++..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777776
No 72
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.02 E-value=57 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8596 15 LEEAIGDKEKQMNQLR 30 (237)
Q Consensus 15 veDil~Evekql~~L~ 30 (237)
+..||.||+-+++.+=
T Consensus 7 L~~il~eiRaQYE~ia 22 (77)
T 3trt_A 7 CTAAMRDVRQQYESVA 22 (77)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3468889998888763
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.65 E-value=53 Score=23.18 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 71 GKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 71 ~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~ 115 (237)
..++.-+.....++.....-+..+..++.+++.++..++.++.++
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555545444544555555554444444443
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.63 E-value=87 Score=24.12 Aligned_cols=27 Identities=33% Similarity=0.617 Sum_probs=10.9
Q ss_pred HHhhHHHHHHHHHHHHhhhhhHHHHHH
Q psy8596 172 VEKSQGEVYRLKAKLENTQGEMESMKE 198 (237)
Q Consensus 172 le~~q~~~~~~~~~le~~q~~~~~~~~ 198 (237)
+...+|++..|..+|.++-.++++++.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444433
No 75
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=49.23 E-value=91 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=10.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 168 MQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 168 ~q~~le~~q~~~~~~~~~le~~q 190 (237)
|+.+.+-.+-.+..+..++.++.
T Consensus 66 L~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.09 E-value=74 Score=23.15 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hhHHHHHHHHHHHHHHHHHHH
Q psy8596 77 LDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-----------STSAELDRLQEKYDKTCADLR 145 (237)
Q Consensus 77 lek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-----------~~q~eL~~Lqek~ekl~~ELe 145 (237)
.......+.++...+..+...+..++.++..+..-+.++..-=..... ....=+..+..+.+.+...+.
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~ 87 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLN 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544444443333333211000000 223444555555555555555
Q ss_pred HHHHHHHHHHHhhHh
Q psy8596 146 RAQAELRVVQADNER 160 (237)
Q Consensus 146 ~~q~~le~~q~~~~~ 160 (237)
.+..++..++.....
T Consensus 88 ~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 88 ALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444443
No 77
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.81 E-value=1e+02 Score=24.39 Aligned_cols=19 Identities=5% Similarity=0.169 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHhhhhhhH
Q psy8596 73 SKAELDKAANEVGRSGADW 91 (237)
Q Consensus 73 lq~elek~q~E~~rleael 91 (237)
++..++..+.++.....++
T Consensus 16 L~~D~~s~~~eleEnqeEL 34 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEEL 34 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333
No 78
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.39 E-value=88 Score=23.24 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHH
Q psy8596 204 QGTLSRLLSERDKAVLEMDKSKEEL 228 (237)
Q Consensus 204 q~~~~~~~~e~d~~~~e~~~~~e~l 228 (237)
-.-|.--..++..+.--..++++.|
T Consensus 68 N~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 68 NNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555555555555444
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.36 E-value=30 Score=30.08 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q psy8596 193 MESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232 (237)
Q Consensus 193 ~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~e~le~~q 232 (237)
+..++.++......+.+|...+..+..|+..+++++++-+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666666666667777777777777777776543
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=45.73 E-value=61 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.344 Sum_probs=14.1
Q ss_pred HHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy8596 155 QADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 187 (237)
Q Consensus 155 q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le 187 (237)
+.++..+...+..|.+-|..+-.++..|..+++
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444443
No 81
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.65 E-value=1.7e+02 Score=26.34 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGR 121 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~ 121 (237)
+.....+.+.|.++++-+..+.+.-..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 344444445555555555444444333
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.41 E-value=1.7e+02 Score=26.39 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHHHHH
Q psy8596 186 LENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSK 225 (237)
Q Consensus 186 le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~~~~ 225 (237)
++++-.+.+.++.+.++......|+.++.+.+.-.+...+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 3333333333333333333333444444444433333333
No 83
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=44.94 E-value=83 Score=22.52 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=36.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 80 AANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL-----------STSAELDRLQEKYDKTCADLRRAQ 148 (237)
Q Consensus 80 ~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~-----------~~q~eL~~Lqek~ekl~~ELe~~q 148 (237)
..+.+.++...+..+...+..++.++..+..-+.++..-=..... ....=...+..+.+.+..++..+.
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444444333333211011000 223444555555555555555555
Q ss_pred HHHHHHHHhhH
Q psy8596 149 AELRVVQADNE 159 (237)
Q Consensus 149 ~~le~~q~~~~ 159 (237)
.++..++....
T Consensus 86 ~~~~~~~~~l~ 96 (107)
T 1fxk_A 86 RQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444444
No 84
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=44.30 E-value=47 Score=19.49 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHhHHH
Q psy8596 195 SMKEEYERTQGTLSRLLSERDKAVLE 220 (237)
Q Consensus 195 ~~~~~~~~~q~~~~~~~~e~d~~~~e 220 (237)
++.+++-+.++.++.||+-.|....-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777765443
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.21 E-value=57 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8596 89 ADWEAARQRLSRLELENERLKHELERSQTTFGR 121 (237)
Q Consensus 89 aele~~K~ei~qlEkEle~~qeel~e~q~~i~~ 121 (237)
++++.++.++..+...+..+...+.++.+++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555655555556666666555555555543
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.99 E-value=2e+02 Score=26.03 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q psy8596 178 EVYRLKAKLENTQGEMESMKEEY 200 (237)
Q Consensus 178 ~~~~~~~~le~~q~~~~~~~~~~ 200 (237)
+..|++.+++.....+....+.|
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHH
Confidence 33344444444444333333333
No 87
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.69 E-value=2e+02 Score=25.92 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8596 97 RLSRLELENERLKHELERSQTTFG 120 (237)
Q Consensus 97 ei~qlEkEle~~qeel~e~q~~i~ 120 (237)
++.++|.++..+...+....+.+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 88
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=40.37 E-value=1e+02 Score=22.20 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=8.3
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q psy8596 167 TMQEKVEKSQGEVYRLKAK 185 (237)
Q Consensus 167 ~~q~~le~~q~~~~~~~~~ 185 (237)
.||..|+---+++.+|+.+
T Consensus 58 ~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 58 QLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4444444444444444433
No 89
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=37.62 E-value=41 Score=21.64 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=20.8
Q ss_pred ccChHhHHhhHH-HHHHHHHHHHHHHHH
Q psy8596 5 HCSSEGALSSLE-EAIGDKEKQMNQLRE 31 (237)
Q Consensus 5 ~~~Te~nL~Rve-Dil~Evekql~~L~~ 31 (237)
++.+..+|.+++ |||.|+++-+.-++.
T Consensus 2 ~~~~~~dle~~KqEIL~E~RkElqK~K~ 29 (45)
T 1use_A 2 SSSDYSDLQRVKQELLEEVKKELQKVKE 29 (45)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899985 899999998876654
No 90
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.80 E-value=1.1e+02 Score=21.76 Aligned_cols=12 Identities=0% Similarity=-0.177 Sum_probs=4.3
Q ss_pred HHHHHhhhhhhH
Q psy8596 80 AANEVGRSGADW 91 (237)
Q Consensus 80 ~q~E~~rleael 91 (237)
+..++..+..++
T Consensus 20 l~~q~~~l~~~~ 31 (107)
T 1fxk_A 20 ISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 91
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=35.81 E-value=1.8e+02 Score=23.67 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8596 71 GKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTT 123 (237)
Q Consensus 71 ~~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e 123 (237)
..+...+..++.++.....++..+...++....++.-.+..+..+...|.-++
T Consensus 13 e~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~Fe 65 (170)
T 3l4q_C 13 EAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFE 65 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666666666666666655555443
No 92
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.75 E-value=1.8e+02 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8596 132 RLQEKYDKTCADLRRAQAE 150 (237)
Q Consensus 132 ~Lqek~ekl~~ELe~~q~~ 150 (237)
.|+..+..+...+..+...
T Consensus 72 ~L~~El~~l~~ki~dLeee 90 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEV 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 93
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.59 E-value=1.5e+02 Score=22.46 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8596 95 RQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRR 146 (237)
Q Consensus 95 K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~ 146 (237)
+.....+..+++.++..+......-....+.++.++..+....+.+...|+.
T Consensus 9 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 9 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544444443333334444444444444444444433
No 94
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.82 E-value=1.5e+02 Score=22.39 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 127 SAELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 127 q~eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
...+..++.++..+-....-++.++
T Consensus 76 ~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 76 IVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 95
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=33.82 E-value=1.7e+02 Score=22.96 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q psy8596 162 RSEEKTMQEKVEKSQGEVYRLKAKLENTQ 190 (237)
Q Consensus 162 ~~~~~~~q~~le~~q~~~~~~~~~le~~q 190 (237)
.+++.+.-+.++.+.+.+..|..+|-.+-
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 96
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=32.43 E-value=3.3e+02 Score=25.81 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8596 128 AELDRLQEKYDKTCAD 143 (237)
Q Consensus 128 ~eL~~Lqek~ekl~~E 143 (237)
.++.+.+.....+.+.
T Consensus 16 ~elarvqkana~aka~ 31 (497)
T 3iox_A 16 TELARVQKANADAKAA 31 (497)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344333333333
No 97
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.43 E-value=1.6e+02 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e~ 115 (237)
..+...+..++.....+...+..+...+..+
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334334444444444444444444333
No 98
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.15 E-value=2.4e+02 Score=23.40 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8596 73 SKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGR 121 (237)
Q Consensus 73 lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~ 121 (237)
.+.++++.+.-|..+..+..-+...+..+..++..+++.+..+.+....
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666666666666666666666666666666666666666544433
No 99
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.03 E-value=1e+02 Score=25.40 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHH
Q psy8596 140 TCADLRRAQAELRVVQADNERVRSEEKTMQEKVE 173 (237)
Q Consensus 140 l~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le 173 (237)
+-..+..++.+...++.+|++++.|.....+++|
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444456655555555555544
No 100
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.11 E-value=2e+02 Score=21.61 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHhHhHHHHH
Q psy8596 178 EVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMD 222 (237)
Q Consensus 178 ~~~~~~~~le~~q~~~~~~~~~~~~~q~~~~~~~~e~d~~~~e~~ 222 (237)
-+.-++++|..++.++..+..++.-....+..+-+|||=-..-|.
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777888888888888888885554443
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.82 E-value=1.2e+02 Score=19.81 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHh
Q psy8596 192 EMESMKEEYERTQGTLSRLLSERD 215 (237)
Q Consensus 192 ~~~~~~~~~~~~q~~~~~~~~e~d 215 (237)
|.+.|+.+...++..+..|..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 102
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=26.63 E-value=4.2e+02 Score=25.12 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 103 LENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQ 155 (237)
Q Consensus 103 kEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q 155 (237)
..|..++.++.++++.=.......+.-+...+.+...+..|.+....+-...+
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ak 61 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAK 61 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333222223334444444445555555555554433333
No 103
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.20 E-value=4.4e+02 Score=24.87 Aligned_cols=90 Identities=9% Similarity=0.165 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 72 KSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAEL 151 (237)
Q Consensus 72 ~lq~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel~e~q~~i~~~e~~~q~eL~~Lqek~ekl~~ELe~~q~~l 151 (237)
.+.+-+...++++...+.-+ ..-...|+..+..++..++... .+|+-|+..++....+|.+++.-+
T Consensus 90 ~~~~~lk~~~~q~~dndn~~---~e~S~eLe~ri~yIK~kVd~qi-----------~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENY---GHVSTELRRRIVTLKQRVATQV-----------NRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHH---HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 2223344444444444444432 677777888888888888877766
Q ss_pred HHHHHhhHhhh----------hHHHHHHHHHHhh
Q psy8596 152 RVVQADNERVR----------SEEKTMQEKVEKS 175 (237)
Q Consensus 152 e~~q~~~~~~~----------~~~~~~q~~le~~ 175 (237)
...-.--.-.| ..++++|..|+..
T Consensus 156 ~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv 189 (491)
T 1m1j_A 156 DIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQA 189 (491)
T ss_dssp HHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHh
Confidence 43221111122 2477777777654
No 104
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=24.72 E-value=1.9e+02 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHH
Q psy8596 206 TLSRLLSERDKAVLEMDKSKEELE 229 (237)
Q Consensus 206 ~~~~~~~e~d~~~~e~~~~~e~le 229 (237)
-+.+++.|.+.....++.++.+.+
T Consensus 47 mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 47 MVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 105
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.65 E-value=1.9e+02 Score=20.47 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 75 AELDKAANEVGRSGADWEAARQRLSRLELENERLKHEL 112 (237)
Q Consensus 75 ~elek~q~E~~rleaele~~K~ei~qlEkEle~~qeel 112 (237)
.++..+..++.+.-.+++.+=+--..++.||.-|++-+
T Consensus 42 ~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 42 REMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333334444444444444444444555555555444
No 106
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=24.53 E-value=47 Score=24.73 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q psy8596 111 ELERSQTTFGRTTL---STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 187 (237)
Q Consensus 111 el~e~q~~i~~~e~---~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le 187 (237)
.+..+...+...+. ..+..++.+.+...+.... ...+..++++.+=+++|+..=.+.-|+..|+-.+|+..++
T Consensus 18 ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~----~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~ 93 (96)
T 3fx0_A 18 QLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV----METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLE 93 (96)
T ss_dssp --------CCSSTTTTTTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445555555554 4456666666654443322 2455566666666666666555555555555555444443
No 107
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.26 E-value=1.6e+02 Score=19.35 Aligned_cols=6 Identities=0% Similarity=0.185 Sum_probs=2.2
Q ss_pred hHHHHH
Q psy8596 175 SQGEVY 180 (237)
Q Consensus 175 ~q~~~~ 180 (237)
+++++.
T Consensus 37 ak~eA~ 42 (52)
T 1jcd_A 37 AKDDAA 42 (52)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 108
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.08 E-value=1.3e+02 Score=18.35 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=21.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e~ 115 (237)
..++...+++-.+...++.++.+++.-+...
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 4566667777777777777777777666543
No 109
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.02 E-value=1.3e+02 Score=18.34 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=19.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 85 GRSGADWEAARQRLSRLELENERLKHELERS 115 (237)
Q Consensus 85 ~rleaele~~K~ei~qlEkEle~~qeel~e~ 115 (237)
..++...+++=.+...++.++.+++.-+.+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 3455666666666666667777666666544
No 110
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.82 E-value=1.5e+02 Score=19.07 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8596 88 GADWEAARQRLSRLELENERLKHEL 112 (237)
Q Consensus 88 eaele~~K~ei~qlEkEle~~qeel 112 (237)
...++.++..+......+..++..+
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I 49 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEV 49 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 111
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.29 E-value=2.4e+02 Score=21.13 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q psy8596 131 DRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTL 207 (237)
Q Consensus 131 ~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~~q~~~~~~~~~le~~q~~~~~~~~~~~~~q~~~ 207 (237)
..++++..++---..++-++...+.++.+-+.+.++-+.+.+-.++-+......+++..--....++.++...++.+
T Consensus 5 ~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 5 AEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554445555555556666666666666666666666666666566666655555555555555554443
No 112
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.44 E-value=3e+02 Score=23.28 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHh
Q psy8596 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEK 174 (237)
Q Consensus 126 ~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~~le~ 174 (237)
+..++..+..++.-+...+.+.+.+.+..++++...+..+..+.+..++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555556666666666666555555555555544444
No 113
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.78 E-value=2.9e+02 Score=21.16 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh-hhhhh--------------------------
Q psy8596 75 AELDKAANEVGRSGADWEAARQRLSRL---ELENERLKHELERSQTTF-GRTTL-------------------------- 124 (237)
Q Consensus 75 ~elek~q~E~~rleaele~~K~ei~ql---EkEle~~qeel~e~q~~i-~~~e~-------------------------- 124 (237)
.++..+...+..+..+++.+...+..+ ...+..+..-++.+..-- .....
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~ 88 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGS 88 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence 344555555556666666666666666 555555555544432111 11111
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHH
Q psy8596 125 ------STSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQE 170 (237)
Q Consensus 125 ------~~q~eL~~Lqek~ekl~~ELe~~q~~le~~q~~~~~~~~~~~~~q~ 170 (237)
...+=+.++..+.+.+...+..+...+..++.....+...++.++.
T Consensus 89 g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 89 GYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2256667777777777777777777777777766655555555553
No 114
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.53 E-value=3e+02 Score=21.26 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy8596 101 LELENERLKHELERSQTTFGRT 122 (237)
Q Consensus 101 lEkEle~~qeel~e~q~~i~~~ 122 (237)
++..+......+..+...+...
T Consensus 11 l~~KvAElekkv~~lek~lk~~ 32 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEI 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555554444443
Done!